TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.608665 %AT, 3629493 nt, 23791 terms. Intergenic: 0.660884 %AT, H2T: 415303 nt, 3654 terms; T2T: 122677 nt, 2994 terms; H2H: 180235 nt, 2440 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|172087630|ref|NC_006840.2| Vibrio fischeri ES114 chromosome I, complete genome (length 2897536) mioC 747 - 313 - | flavodoxin TERM 1 775 - 792 + r 90 -11.3 -3.85878 | opp_overlap 775, overlap 790 TAAAAATATAAAAAA TGGGCCT ACAT AGGCCCA TTATTAATCTTATTA TERM 2 792 - 775 - R 100 -11.3 -5.69068 | opp_overlap 775 790 TAAAAATATAAAAAA TGGGCCT ACAT AGGCCCA TTATTAATCTTATTA TERM 3 790 - 814 + r 88 -7.3 -4.87803 | opp_overlap 775 809, overlap 775 TGGGCCTACATAGGC CCATTATTAAT CTT ATTAATATTGG TTTTATTTACCAATA trmE 2184 - 817 - | tRNA modification GTPase TrmE TERM 4 1661 - 1637 - G 72 -4.3 -4.73613 | opp_overlap 1637 CCATCAGCAAGAAAA TCGATTTCC TCTTCAG GGAAGTCGA TTGCTGCTTCAACGT TERM 5 2255 - 2239 - R 100 -11.5 -5.4833 | opp_overlap 2239 TCATTGAACAAAAAA GGCGACC AAT GGCCGCC TTTGTTTTACTTCAA TERM 6 2239 - 2255 + r 100 -9.3 -4.78077 | opp_overlap 2239 TCATTGAACAAAAAA GGCGACC AAT GGCCGCC TTTGTTTTACTTCAA yidC 3906 - 2281 - | putative inner membrane protein translocase component YidC TERM 7 2640 - 2664 + g 78 -3 -5.50774 | gap 2, opp_overlap 2638 2648, overlap 2647 2648 TTTGAAGAAGAATTG GTAAACAACCAC CTA GTGG--GTTTAC TTTTTCTTTCTTGTA rnpA 4486 - 4133 - | ribonuclease P rpmH 4636 - 4502 - | 50S ribosomal protein L34 yecC 5559 - 4822 - | cystine transport ATP-binding protein yecS 6227 - 5556 - | cystine transport system permease protein TERM 8 6303 - 6284 - R 78 -7.9 -4.10269 | opp_overlap 6283 6284 CAAAGAAAGATGAAA CCCACTA GTAATA TAGTGGG CTTATTTGATGAATG fliY 7104 - 6352 - | cystine-binding protein TERM 9 7130 - 7144 + H 79 -3.6 -5.42259 | CCTATTATTCATTCA GTATTA GGA TGATAC TTTTTTTGCGACTGA dnaA 7401 - 8810 + | chromosomal replication initiation protein TERM 10 9616 - 9606 - g 81 -6.8 -4.76123 | opp_overlap 9605 9607 AAAGTAGTAATAAAA CGCT TGA AGCG GATTGTGATGAACTG dnaN 8843 - 9943 + | DNA polymerase III subunit beta recF 9957 - 11036 + | recombination protein F TERM 11 11581 - 11593 + G 71 -4.9 -4.56969 | AAGTGAAGAAACATT TACTA ACG TAGTA TTTGTTTATGAAATT TERM 12 13198 - 13167 - g 76 -7.3 -4.30719 | opp_overlap 13157, overlap 13168 GTCTTCTAGAAGAAA GTGCTTACGCACA ACGTGG TGAGCGTAAGCAA CCAGTTTCTAGCTTT TERM 13 13197 - 13168 - g 79 -10.8 -3.1811 | opp_overlap 13157, overlap 13167 TCTTCTAGAAGAAAG TGCTTACGCACA ACGTGG TGAGCGTAAGCA ACCAGTTTCTAGCTT gyrB 11054 - 13471 + | DNA gyrase subunit B TERM 14 13610 - 13628 + F 100 -8.8 -6.02914 | opp_overlap 13610 TAGATATATGAGGAA GCACTGCT GTT GGCGGTGC TTTTTTTTATCTGAA ibpA 13895 - 14329 + | heat shock chaperone TERM 15 14360 - 14376 + T 100 -10.1 -5.82172 | opp_overlap 14360 ATTATTGAACATAAA GGCGCTG TAA TAGCGCC TTTTTTTGTGTTGAT TERM 16 14376 - 14360 - T 89 -9.4 -4.22009 | opp_overlap 14360 ATTATTGAACATAAA GGCGCT GTAAT AGCGCC TTTTTTTGTGTTGAT avtA 15786 - 14539 - | valine--pyruvate transaminase glyQ 16015 - 16935 + | glycyl-tRNA synthetase subunit alpha glyS 16938 - 19004 + | glycyl-tRNA synthetase subunit beta TERM 17 19046 - 19027 - f 78 -7.8 -4.10552 | opp_overlap 19027 CCTTATCAAATGAAA TACCTCGC TAAT GCGGGGTA TTTTTTTGTCTAAAT TERM 18 19027 - 19046 + F 100 -10 -5.72616 | opp_overlap 19027 CCTTATCAAATGAAA TACCTCGC TAAT GCGGGGTA TTTTTTTGTCTAAAT malS 19150 - 20790 + | alpha-amylase VF_0018 20925 - 21176 + | NADH dehydrogenase subunit II-related protein TERM 19 21190 - 21208 + T 100 -13.2 -5.30686 | opp_overlap 21190 AGTTTATAAGAGAAA GGCAACCA TTA TGGTTGCC TTTTTTGTACGTATT TERM 20 21208 - 21190 - T 100 -13.2 -4.27519 | opp_overlap 21190 AGTTTATAAGAGAAA GGCAACCA TTA TGGTTGCC TTTTTTGTACGTATT tusA 21473 - 21222 - | sulfur transfer protein TusA TERM 21 21578 - 21609 + H 74 -6 -4.49337 | opp_overlap 21573 21578 21581 21585 GTAGATTAAATTTAA CAACAAATTAACAT TGGA ACGTTAACTTGTTG TTTTATCCATTCTAA TERM 22 21609 - 21578 - H 83 -10.4 -3.32159 | opp_overlap 21578, overlap 21573 21581 21585 GTAGATTAAATTTAA CAACAAATTAACAT TGGA ACGTTAACTTGTTG TTTTATCCATTCTAA VF_0020 21659 - 21850 + | hypothetical protein VF_0021 21997 - 22938 + | LysR family transcriptional regulator yiaA 23063 - 23509 + | inner membrane protein TERM 23 23565 - 23582 + T 77 -9.1 -3.21962 | opp_overlap 23565 ATTGATATAAAAAAA GGCAGCG ATAA TGCTGCC TTGAATTACTGATGT TERM 24 23582 - 23565 - T 93 -8.4 -5.72616 | opp_overlap 23565 ATTGATATAAAAAAA GGCAGC GATAAT GCTGCC TTGAATTACTGATGT yhdH 24636 - 23656 - | oxidoreductase, Zn-dependent and NAD(P)-binding TERM 25 23988 - 24000 + g 77 -4.8 -4.95806 | CAGTATCGATAGCGC CAGC CCATA GCTG TTTTTCTAATGGTTT TERM 26 25186 - 25172 - R 82 -8.6 -4.07246 | opp_overlap 25172 25171 25169 TCAGGCTAAACGAAA GCATCA CTT TGATGC ATGTTTATACTTAAG TERM 27 25292 - 25276 - R 70 -3.7 -4.96848 | opp_overlap 25276 CTCGTGATACAAAAA CTACATT CAA AAAGTAG TCTGTTTATAGCACT TERM 28 25361 - 25330 - R 87 -6.6 -5.4433 | gap 1, opp_overlap 25330 AGATAGAAAGAAAAA GTCGCTTCAATGTTC ATA GAACAGAG-AGCGAC TTTTTTTGTTTTTAA TERM 29 25330 - 25361 + r 100 -6.6 -6.20267 | gap 1, opp_overlap 25330 AGATAGAAAGAAAAA GTCGCTTCAATGTTC ATA GAACAGAG-AGCGAC TTTTTTTGTTTTTAA fadA 26625 - 25396 - | 3-ketoacyl-CoA thiolase fadB 28750 - 26573 - | multifunctional fatty acid oxidation complex subunit alpha TERM 30 27406 - 27427 + gH 72 -5.9 -4.42667 | gap 1, overlap 27407 GATTGAAGAAGTGCA TGCCACAGAA ATT TTCTG-GGCG TTTTAATGATTTTGC yigZ 28993 - 29610 + | elongation factor TERM 31 29765 - 29780 + G 70 -5.4 -4.4846 | GTTTATATATCGTGA TGGTGC CGGT GTACCA TTTGTTATTACCTTC TERM 32 29906 - 29927 + G 78 -2.9 -5.45802 | overlap 29907 TTTTTGGATGGTAAT CGGTAGTGC AGGA GCATTGCCA TTTTTGTTTTCAGGC trkH 29667 - 31124 + | potassium transporter hemG 31157 - 31681 + | protoporphyrinogen oxidase TERM 33 31843 - 31827 - f 81 -10.9 -2.63631 | opp_overlap 31826 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 34 31888 - 31911 + F 100 -11.8 -4.84527 | opp_overlap 31888 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 35 31911 - 31888 - f 82 -9.6 -3.53722 | opp_overlap 31888 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 36 32037 - 32014 - f 82 -9.6 -3.53722 | opp_overlap 32014 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 37 32014 - 32037 + F 100 -11.8 -4.84527 | opp_overlap 32014 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 38 32163 - 32140 - f 100 -9.6 -4.45083 | opp_overlap 32140 GCCATATTTAGAAAA GGCTCATATC GAAA GGTATGAGCC TTTTTTCTGTCTGGG TERM 39 32140 - 32163 + F 100 -11.8 -5.4251 | opp_overlap 32140 GCCATATTTAGAAAA GGCTCATATC GAAA GGTATGAGCC TTTTTTCTGTCTGGG TERM 40 32417 - 32437 + G 74 -9.1 -3.58864 | overlap 32416 GGTCAGTGGTCAGCT TGATAATGG ATT CCGTTATCA TATTTATCCTGATCG pqqL 32310 - 35063 + | zinc protease VF_0030 35144 - 35338 + | hypothetical protein TERM 41 35363 - 35381 + F 100 -11 -5.64421 | opp_overlap 35363 35362 TGAATAGTTTGAAAG GGCATACC TAA GGTGTGCC TTTTTTATTTGCCAT VF_0031 35637 - 37016 + | chloride channel protein TERM 42 37774 - 37797 + G 77 -6 -4.57073 | TAGCTGACAGTTTAG TTGGTGGTAC CAAA GAATCACCAA TTTTTGAACCCAATG thiC 37617 - 39551 + | thiamine biosynthesis protein ThiC TERM 43 39560 - 39591 + F 82 -7.4 -4.52857 | opp_overlap 39561 39564, overlap 39561 39564 TGAATAGCGATGATA ATAAGGGATGTTTC ACGT GGAACATCTCTTAG TTTTGTATACGGAAT TERM 44 39561 - 39590 + F 86 -10.9 -3.31232 | opp_overlap 39561 39564, overlap 39560 39564 GAATAGCGATGATAA TAAGGGATGTTTC ACGT GGAACATCTCTTA GTTTTGTATACGGAA TERM 45 39564 - 39587 + F 75 -8.2 -3.79162 | opp_overlap 39561 39564, overlap 39561 39560 TAGCGATGATAATAA GGGATGTTTC ACGT GGAACATCTC TTAGTTTTGTATACG thiE 39622 - 40281 + | thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) thiF 40274 - 41107 + | thiamin (thiazole moiety) biosynthesis protein thiS 41100 - 41312 + | sulfur carrier protein ThiS thiG 41314 - 42084 + | thiazole synthase TERM 46 43076 - 43059 - g 71 -6.3 -4.18494 | CAGCGGCATCGAAAA CACAACC GGGT GGTTATG CAAATGATGACCAAG thiH 42095 - 43210 + | thiamine biosynthesis protein ThiH TERM 47 43303 - 43271 - T 95 -12.3 -3.81951 | opp_overlap 43272 43276, overlap 43272 43276 CCTGAGAGCAGTAAA TTAAAGTACTACTTA ACT TAAGTAGTACTTTAT TTAGTTTGTTGATTT TERM 48 43272 - 43302 + T 100 -15.8 -4.23652 | opp_overlap 43271 43272 43276, overlap 43276 CTGAGAGCAGTAAAT TAAAGTACTACTTA ACT TAAGTAGTACTTTA TTTAGTTTGTTGATT TERM 49 43302 - 43272 - T 100 -15.8 -2.88849 | opp_overlap 43272 43276, overlap 43271 43276 CTGAGAGCAGTAAAT TAAAGTACTACTTA ACT TAAGTAGTACTTTA TTTAGTTTGTTGATT TERM 50 43298 - 43276 - T 100 -12.2 -4.11623 | opp_overlap 43272 43276, overlap 43272 43271 GAGCAGTAAATTAAA GTACTACTTA ACT TAAGTAGTAC TTTATTTAGTTTGTT TERM 51 43276 - 43298 + T 100 -12.2 -4.66537 | opp_overlap 43276 43272 43271, overlap 43272 GAGCAGTAAATTAAA GTACTACTTA ACT TAAGTAGTAC TTTATTTAGTTTGTT VF_0037 45775 - 43328 - | beta-N-acetylhexosaminidase TERM 52 45984 - 46019 + r 100 -12.8 -3.99481 | opp_overlap 45976 45992, overlap 45987 45992 ACATATATTTTTTAC TAAAAAAATGCCACGT AAAT ACGTGGCATTTTATTG TTGTATTTTAATGAA TERM 53 45987 - 46016 + r 100 -12.3 -4.10559 | opp_overlap 45976 45992, overlap 45984 45992 TATATTTTTTACTAA AAAAATGCCACGT AAAT ACGTGGCATTTTA TTGTTGTATTTTAAT TERM 54 46011 - 45992 - R 100 -12.2 -5.52384 | opp_overlap 45992 45987 45984 TTTTTACTAAAAAAA TGCCACGT AAAT ACGTGGCA TTTTATTGTTGTATT TERM 55 45992 - 46011 + r 100 -12.2 -4.99312 | opp_overlap 45992, overlap 45987 45984 TTTTTACTAAAAAAA TGCCACGT AAAT ACGTGGCA TTTTATTGTTGTATT VF_0038 47828 - 46035 - | Xaa-Pro aminopeptidase TERM 56 47266 - 47276 + g 100 -6.8 -5.63517 | AGTTGTGTTAATAGC GCTG CGT CAGC TTTTTTCTTTGAGAC yidZ 48898 - 47933 - | LysR family transcriptional regulator mdtL 48996 - 50225 + | multidrug efflux system protein VF_0042 50347 - 50637 + | hypothetical protein TERM 57 50702 - 50675 - T 90 -11.4 -3.82321 | opp_overlap 50680, overlap 50680 TAGGTAATTAAAATA GAAAAGCAGCGT ATAT ACGCTGCTTTTT GTTTTTAGGTCAGTC TERM 58 50680 - 50697 + T 100 -11.3 -5.63236 | opp_overlap 50680 50675 AATTAAAATAGAAAA GCAGCGT ATAT ACGCTGC TTTTTGTTTTTAGGT TERM 59 50697 - 50680 - T 100 -11.3 -4.93333 | opp_overlap 50680, overlap 50675 AATTAAAATAGAAAA GCAGCGT ATAT ACGCTGC TTTTTGTTTTTAGGT VF_0043 51688 - 50759 - | drug/metabolite exporter family protein rmuC 51789 - 53309 + | recombination limiting protein ubiE 53367 - 54131 + | ubiquinone/menaquinone biosynthesis methyltransferase yigP 54143 - 54766 + | hypothetical protein TERM 60 54984 - 55003 + G 74 -5 -4.7871 | opp_overlap 54984 TAAGTTCGGTCAAAT GATGTCGA CTCG TCGAGATC TTTTTCCTCCTCATT TERM 61 55678 - 55668 - g 73 -5.4 -4.49939 | AGATAATCCAGAAAA TCCA CAA TGGA TCGGATTAGACTGTG ubiB 54763 - 56397 + | putative ubiquinone biosynthesis protein UbiB tatA 56449 - 56697 + | twin argininte translocase protein A tatB 56701 - 57081 + | sec-independent translocase tatC 57084 - 57839 + | TatABCE protein translocation system subunit TERM 62 57889 - 57870 - T 80 -6.4 -4.74706 | opp_overlap 57870 CTGAATATTGAAAAA GCGTTGAT GATT ATCAGCGC TTTTTTTATGCCTGC TERM 63 57870 - 57889 + T 95 -8.6 -5.64274 | opp_overlap 57870 CTGAATATTGAAAAA GCGTTGAT GATT ATCAGCGC TTTTTTTATGCCTGC TERM 64 58594 - 58563 - T 83 -11.6 -2.67803 | opp_overlap 58565, overlap 58559 58560 CTGCGAGTAAAGTTA TAGCCCCGCTAGAT GAAA ATCTAGTGGGGCTT TTCTTGTTTAGAGCA TERM 65 58565 - 58592 + T 100 -16.4 -5.00196 | opp_overlap 58563 58559 58560 GCGAGTAAAGTTATA GCCCCGCTAGAT GAAA ATCTAGTGGGGC TTTTCTTGTTTAGAG tatD 59991 - 59230 - | DNase, TatD family hemB 60143 - 61159 + | delta-aminolevulinic acid dehydratase TERM 66 61320 - 61357 + T 100 -11.6 -4.75372 | opp_overlap 61325, overlap 61325 TAATCCCAAAAAACA AAAAAGCATGATGATT AACTAA AATCATCATGCTTTTA TTTTTCCTGAATCCT TERM 67 61325 - 61352 + T 100 -11.5 -5.3104 | opp_overlap 61325, overlap 61320 CCAAAAAACAAAAAA GCATGATGATT AACTAA AATCATCATGC TTTTATTTTTCCTGA TERM 68 61352 - 61325 - T 100 -11.5 -6.04324 | opp_overlap 61320 61325 CCAAAAAACAAAAAA GCATGATGATT AACTAA AATCATCATGC TTTTATTTTTCCTGA gpp 62946 - 61453 - | guanosine pentaphosphate phosphohydrolase rhlB 64278 - 62980 - | ATP-dependent RNA helicase TERM 69 63876 - 63838 - G 75 -8.2 -4.07687 | overlap 63849 ACCTTGCTTGTAAAA GTCGATAATACGACCGGT TGT ACCGATCAAAATATCAAC ACCTTGCTCAATCAC TERM 70 64179 - 64197 + g 76 -7.4 -4.27316 | CCTTAGCTTGAATTG GGGTACAT TTG ATGAACCC TTTTGCATTCAAACC trxA 64391 - 64717 + | thioredoxin TERM 71 64740 - 64776 + F 100 -10.4 -4.54047 | opp_overlap 64745, overlap 64745 TGGTATTAAGTCAGA TAGAACCGCATATAAT GAAAA ATTATGTGCGGTTTTG TTTTATCTGAGCTAA TERM 72 64771 - 64745 - f 73 -8.1 -3.61983 | opp_overlap 64740 64745 TTAAGTCAGATAGAA CCGCATATAAT GAAAA ATTATGTGCGG TTTTGTTTTATCTGA TERM 73 64745 - 64771 + F 100 -10.3 -5.23292 | opp_overlap 64745, overlap 64740 TTAAGTCAGATAGAA CCGCATATAAT GAAAA ATTATGTGCGG TTTTGTTTTATCTGA TERM 74 64993 - 64980 - g 81 -6.7 -4.75174 | TACTGAACTTAAAAA CCGAT CTGT ATCGG ACCTTGTTGCTCTTG rho 64957 - 66216 + | transcription termination factor Rho TERM 75 66280 - 66262 - f 85 -8.8 -4.20834 | opp_overlap 66262 CCCAAAATAATGAAA CGCTACCA GTT TGGTGGCG TTTTTTGTTGATTAA TERM 76 66262 - 66280 + F 100 -11 -5.5604 | opp_overlap 66262 CCCAAAATAATGAAA CGCTACCA GTT TGGTGGCG TTTTTTGTTGATTAA TERM 77 67180 - 67215 + G 89 -5.4 -5.4505 | TGCTTTTGCTTCACT TGCTCAACTTCATCCG CTGC CGCAAGAGGTTCAGCA TTTTTTGTTAGCGAA VF_0059 66374 - 67369 + | hypothetical protein TERM 78 68049 - 68026 - g 77 -5.2 -4.96773 | opp_overlap 68046 CTAAGTAAAAACAAA GTGATCATGC GTTG GCTTGCTCAC CGTGGTGGTGCATTA ubiD 67471 - 69315 + | 3-octaprenyl-4-hydroxybenzoate decarboxylase VF_0061 69479 - 69742 + | phenol hydroxylase P5 protein fre 69839 - 70549 + | FMN reductase TERM 79 70609 - 70570 - T 89 -13.8 -2.80244 | opp_overlap 70579, overlap 70579 CTTTCTAACAAATAT CAATAAAAATGCCACTCA ATAA TGAGTGGCATTTTTTATG GATGTTATAAAAACG TERM 80 70579 - 70600 + T 100 -13.1 -5.30686 | opp_overlap 70570 70579 AAATATCAATAAAAA TGCCACTCA ATAA TGAGTGGCA TTTTTTATGGATGTT TERM 81 70600 - 70579 - T 100 -13.1 -5.20606 | opp_overlap 70579, overlap 70570 AAATATCAATAAAAA TGCCACTCA ATAA TGAGTGGCA TTTTTTATGGATGTT hemY 71811 - 70627 - | protoheme IX synthesis protein TERM 82 70677 - 70690 + g 71 -5.2 -4.53636 | GAGAAAGATCTGCCG CCGC TTGTTT GCGG TTTTGCTTATCTAAT hemX 72980 - 71808 - | uroporphyrinogen III methylase TERM 83 72290 - 72302 + g 70 -5.5 -4.45386 | opp_overlap 72284, overlap 72291 CTGGAAGAACGGCGC TTGCC AAT GGCAG TTTATTAATTTGTTG TERM 84 72729 - 72745 + g 71 -7.3 -3.95772 | TGCTGTTTTTAATTT TTGCTCA AGT TGAGCGA TTTGGATTTGTTGTT hemD 73738 - 72977 - | uroporphyrinogen III synthase TERM 85 73334 - 73357 + g 72 -3.2 -5.1287 | gap 1 AATCAGATCCCGTCC GCCATT-TCCT CGA AGAATAATGGC TTTTTTCCCTGTCGC hemC 74676 - 73741 - | porphobilinogen deaminase TERM 86 75168 - 75137 - g 85 -5.8 -5.30616 | opp_overlap 75136 75140, overlap 75140 TCATGCAAATAAAAA GCAGCGTGAGTGGA TGGC TCAACTTACGCTTC GTTATCCTTTATCTA TERM 87 75140 - 75165 + G 72 -8.3 -3.52809 | opp_overlap 75137 75140, overlap 75136 TGCAAATAAAAAGCA GCGTGAGTGGA TGGC TCAACTTACGC TTCGTTATCCTTTAT TERM 88 76356 - 76332 - g 85 -5.9 -5.252 | TACGTTTATAAAAAA CCATTAATT GCTAAAG AATTAATGG GCGCTAAATTTTTAG cyaA 75012 - 77459 + | adenylate cyclase TERM 89 77490 - 77470 - f 73 -3.9 -5.18355 | opp_overlap 77469 77472 TCTAAAAAGCAAAAA GAGATCCGA GAT TTGGGTCTC ACTTCATTTCAGTAT uvrD 77544 - 79745 + | DNA-dependent helicase II TERM 90 79804 - 79762 - T 93 -12.5 -3.33696 | gap 1, opp_overlap 79763 79775, overlap 79775 TTGGTTTTTAATCAA TAAAATAAAAAAAGAGAGCA AATA TGCTCTCTTTTTTTATCT-A TTATTTAGCCACATC TERM 91 79763 - 79804 + T 95 -11.9 -3.9122 | opp_overlap 79762 79775, overlap 79775 TGGTTTTTAATCAAT AAAATAAAAAAAGAGAGCA AATA TGCTCTCTTTTTTTATCTA TTATTTAGCCACATC TERM 92 79775 - 79792 + T 100 -9.9 -5.80248 | opp_overlap 79775 79762, overlap 79763 AATAAAATAAAAAAA GAGAGCA AATA TGCTCTC TTTTTTTATCTATTA TERM 93 79792 - 79775 - T 100 -9.9 -6.17669 | opp_overlap 79763 79775, overlap 79762 AATAAAATAAAAAAA GAGAGCA AATA TGCTCTC TTTTTTTATCTATTA TERM 94 79862 - 79847 - T 72 -4.8 -4.7329 | opp_overlap 79847 AAAAGGACTTAAAAA TTGTAA TTCA TTACAA TTGTGACATTTAAAT rarD 81279 - 80164 - | chloramphenical resistance permease TERM 95 81130 - 81107 - G 89 -4.6 -5.63645 | overlap 81109 GTAAAATAGAAAAAA GAGAATGTCA GGAG TGACACTCTA AAGATATTATTATTT TERM 96 81128 - 81109 - G 78 -7.2 -4.42512 | overlap 81107 AAAATAGAAAAAAGA GAATGTCA GGAG TGACACTC TAAAGATATTATTAT TERM 97 81707 - 81723 + G 70 -8.1 -3.6217 | GTGATTTTATGGATC GTTTAGA GTC TCTAAAC TTGTGTATGATCGCT recQ 81298 - 83133 + | ATP-dependent DNA helicase RecQ VF_0071 83137 - 83427 + | hypothetical protein TERM 98 83475 - 83446 - T 100 -12.3 -4.14392 | opp_overlap 83451, overlap 83451 GCTTAATTTTTAAAA GAAAACGGCTGTA AATA TACAGCCGTTTTT TTTGGATTAAGCCAT TERM 99 83451 - 83470 + T 100 -12.2 -5.86332 | opp_overlap 83446 83451 ATTTTTAAAAGAAAA CGGCTGTA AATA TACAGCCG TTTTTTTTGGATTAA TERM 100 83470 - 83451 - T 100 -12.2 -5.08255 | opp_overlap 83451, overlap 83446 ATTTTTAAAAGAAAA CGGCTGTA AATA TACAGCCG TTTTTTTTGGATTAA glpT 84846 - 83482 - | sn-glycerol-3-phosphate transporter yhhQ 85190 - 85861 + | hypothetical protein TERM 101 85909 - 85881 - f 76 -7.5 -3.99347 | opp_overlap 85886, overlap 85886 AAATGATCCAAAGAA GAAAAGGCTAACA TTA TGTTGGCCTTTTT TATTACCTATATTAT TERM 102 85904 - 85886 - f 88 -7.4 -5.011 | opp_overlap 85886, overlap 85881 ATCCAAAGAAGAAAA GGCTAACA TTA TGTTGGCC TTTTTTATTACCTAT TERM 103 85886 - 85904 + F 100 -9.6 -5.49234 | opp_overlap 85881 85886 ATCCAAAGAAGAAAA GGCTAACA TTA TGTTGGCC TTTTTTATTACCTAT TERM 104 86148 - 86174 + F 100 -10.2 -5.97575 | gap 1 TTCTCTTTTTGCTGA GCGGCG-CTTC ATTTAA GAAGACGCCGC TTTTTTTTGTCCGTT polA 86562 - 89360 + | DNA polymerase I TERM 105 89455 - 89472 + T 100 -9.1 -5.44119 | opp_overlap 89453 AAATTAAAACTATGA GCCAGCG CACG CGTTGGC TTTTTTTGGCCTAAA TERM 106 89668 - 89696 + T 100 -15.4 -5.72622 | opp_overlap 89666 TTGGCTAAATTCAGC CGCCTCAGTCAA CCTTT TTGACTGGGGCG TTTTTTCTTTCTGGC TERM 107 89780 - 89794 + T 70 -3.6 -4.91657 | AATTTTTATTACACG TTATCG AAT TGATAA TTTATTTTATTAATT TERM 108 89996 - 90018 + T 100 -16.4 -5.34381 | TTATCTCTCCCATTT CCCCACCTTA GCT TAAGGTGGGG TTTTTATTTGCCTTT yihA 90732 - 90085 - | GTPase EngB TERM 109 90791 - 90806 + H 76 -4 -5.252 | CCAAGTTGGATTATT GTAGTC AGCT GATTAC TTTTTTGTGAAAATG cycA 91021 - 91638 + | cytochrome c4 TERM 110 91682 - 91696 + F 93 -5.7 -6.09888 | opp_overlap 91682 91681 CTAAATTTAAAGAAG CAGCT CTTGT AGCTG TTTTTTTTATTAAAA TERM 111 92057 - 92067 + G 71 -6.8 -3.97444 | CTAGACTTTGGGTGT GGTC CTG GACC TTTACTTGCTCATAT VF_0077 91793 - 92434 + | 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase TERM 112 92466 - 92452 - g 70 -2.7 -5.14965 | overlap 92453 AGCCGTATTAAAAAA GCCCG TAAGC CGGGA ATGTCGAGCCAACCA TERM 113 92659 - 92647 - g 70 -2.7 -5.14965 | ATTGGTAGTAAAAAA CCAAT TCA ATTAG TTGTTGAAGCAAAAC yihI 92434 - 92979 + | hypothetical protein TERM 114 93103 - 93132 + G 71 -5 -4.61231 | opp_overlap 93105, overlap 93105 AAGAACAACATAGAA AATTGGCGATAC AGCAAC GTAACGCCAATA TTTTTGAGAATGTGG TERM 115 93105 - 93130 + G 71 -7.6 -3.91908 | opp_overlap 93105, overlap 93103 GAACAACATAGAAAA TTGGCGATAC AGCAAC GTAACGCCAA TATTTTTGAGAATGT TERM 116 93130 - 93105 - g 88 -8.3 -4.73633 | opp_overlap 93105 93103 GAACAACATAGAAAA TTGGCGATACA GCAA CGTAACGCCAA TATTTTTGAGAATGT VF_0079 92982 - 93473 + | putative coproporphyrinogen III oxidase hemN 93582 - 94955 + | coproporphyrinogen III oxidase TERM 117 95058 - 95035 - T 75 -8.1 -3.71649 | opp_overlap 95035 TTTGCAAATTTGAAA CCGTAGGTG TTAATG CACCTGCGG TTTTTTGTTTTTAAG TERM 118 95035 - 95058 + T 100 -11 -5.93252 | opp_overlap 95035 TTTGCAAATTTGAAA CCGTAGGTGT TAAT GCACCTGCGG TTTTTTGTTTTTAAG asnC 95606 - 95145 - | DNA-binding transcriptional regulator AsnC TERM 119 96015 - 96005 - g 76 -6.8 -4.41348 | opp_overlap 96004 GTGGGCTTAAACAAA GGTG CGA CACC GATTGTACTTGATGG TERM 120 96476 - 96461 - g 70 -3.2 -4.96646 | opp_overlap 96474 TTAGATAATCAAAAA CCATCG ATGG CGATTG AAACGAAAAAGAACC yhiQ 95747 - 96526 + | SAM-dependent methyltransferase uspA 96948 - 96523 - | universal stress global response regulator ftnA 97131 - 97658 + | ferritin iron storage protein (cytoplasmic) uspB 97739 - 98092 + | universal stress protein UspB yhiN 98141 - 99325 + | oxidoreductase TERM 121 99603 - 99631 + G 93 -13.9 -3.16191 | ACAGTGCTTATTTCC TCACGCTGAGATC GTT GGTCTCAGCGCGA TTCATACCAGTATAA VF_0087 99442 - 101937 + | sensory transduction protein kinase VF_0088 102526 - 101927 - | putative cytoplasmic protein TERM 122 102024 - 101993 - G 70 -8.8 -3.40611 | opp_overlap 101998, overlap 101998 TTGATCGTAATAACA TGAAAGAGCTTGAG CATT CTCAGGCTCTTTTA CCATCTCTAAGACTT TERM 123 101998 - 102019 + g 90 -10.9 -4.18401 | opp_overlap 101998 101993 CGTAATAACATGAAA GAGCTTGAG CATT CTCAGGCTC TTTTACCATCTCTAA TERM 124 102019 - 101998 - G 79 -8.7 -4.01135 | opp_overlap 101998, overlap 101993 CGTAATAACATGAAA GAGCTTGAG CATT CTCAGGCTC TTTTACCATCTCTAA VF_0089 103536 - 102526 - | hypothetical protein TERM 125 103236 - 103223 - G 71 -3.7 -4.83615 | TAGTCGCTAGAAAAA CCGCC TTTA GGTGG GGCTTCAAAATGACC eda 103693 - 104328 + | multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase VF_0091 106810 - 104345 - | GGDEF domain-containing protein VF_2580 106809 - 107000 + | hypothetical protein add 108133 - 107132 - | adenosine deaminase TERM 126 107614 - 107599 - G 74 -4.7 -4.88067 | AGTGATTTACAAAAA GGTCA CCTGGT TGACC TAACTCATCACCAGC TERM 127 108263 - 108287 + r 87 -13 -2.78906 | opp_overlap 108263, overlap 108255 108266 CAAATCGGTTAAAAA CAACGCAATC TGAAC GATTGCGTTG TGATGTTAACTTATT TERM 128 108287 - 108263 - R 100 -13 -4.60924 | opp_overlap 108255 108263 108266 CAAATCGGTTAAAAA CAACGCAATC TGAAC GATTGCGTTG TGATGTTAACTTATT TERM 129 108266 - 108284 + r 77 -8.9 -3.53189 | opp_overlap 108263, overlap 108263 108255 ATCGGTTAAAAACAA CGCAATC TGAAC GATTGCG TTGTGATGTTAACTT VF_0094 110856 - 108298 - | GGDEF domain-containing protein ntrC 112376 - 110973 - | fused DNA-binding response regulator in two-component regulatory system with NtrB: nitrogen regulatory response regulator/sigma54 interaction protein TERM 130 111978 - 111995 + g 100 -4.1 -6.22691 | overlap 111969 111967 ATGATGCTCCTTTTT CGGAGTA TTGA TGCTCTG TTTTTTTTGTTCTTG ntrB 113473 - 112415 - | nitrogen regulation protein NR(II) TERM 131 113510 - 113494 - R 100 -10.9 -4.41302 | opp_overlap 113491 TAGCAAATTAATAAA TGCACCA TCA TGGTGCA TCATACCTTGCTTTT VF_0097 114086 - 113550 - | hypothetical protein TERM 132 114288 - 114268 - R 100 -16.9 -5.47159 | opp_overlap 114263, overlap 114246 TGCCAATATAAAAAA GGCTCGCCT GTG AGGCGAGCC TAAAAATTAATCAAT glnA 115745 - 114336 - | glutamine synthetase TERM 133 116259 - 116238 - H 75 -8.7 -3.51232 | overlap 116234 CCGTTTTTAAACCAA GTAGTGCCA ATGG TGGCTCTAC ACGCTCTGAGTGAAT typA 116283 - 118115 + | GTP-binding protein TERM 134 118200 - 118165 - f 78 -10.6 -2.65376 | opp_overlap 118170, overlap 118163 118170 AAATCTAATAAAATT TAAAATCCCTTTGTAG GCAA CTACGAAGGGATTTTT TTTATCTGTTATGAT TERM 135 118195 - 118170 - f 100 -10.5 -4.4836 | opp_overlap 118170, overlap 118165 118163 TAATAAAATTTAAAA TCCCTTTGTAG GCAA CTACGAAGGGA TTTTTTTTATCTGTT TERM 136 118170 - 118195 + F 100 -12.7 -6.08563 | opp_overlap 118170 118165 118163 TAATAAAATTTAAAA TCCCTTTGTAG GCAA CTACGAAGGGA TTTTTTTTATCTGTT TERM 137 118282 - 118262 - f 71 -7.7 -3.63744 | opp_overlap 118262, overlap 118260 TTGCTTGTTAAAATA GCTTATAAC AGC GTTATAAAC TTTATAATTAGGCCC yihY 118412 - 119344 + | ribonuclease BN dtd 119316 - 119750 + | D-tyrosyl-tRNA deacylase yiiD 120268 - 121167 + | acetyltransferase trmH 122190 - 121501 - | tRNA guanosine-2'-O-methyltransferase TERM 138 122434 - 122407 - R 100 -17.8 -4.44548 | TAGATCTAACTAAAA GGACGAGGTCCG TACT CGAACCTCGTCC CTCGCATCTAGTTCT spoT 124565 - 122442 - | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 139 123909 - 123919 + g 74 -4 -5.11613 | AATACGACCTTCAAT TTCA GAG TGAA TTTTTTGGATCATCT TERM 140 124457 - 124469 + g 71 -6.2 -4.25256 | CACTTGAGCGAGTTT GCCC TTCAT GGGC TTCTTTTGCTACCAG TERM 141 124517 - 124499 - G 91 -13.2 -3.22894 | GATAAGATCGACGAA GAGCCTCA ATG TGAGGCTC TGGCAGGTAATCTTT rpoZ 124888 - 124616 - | DNA-directed RNA polymerase subunit omega gmk 125620 - 124997 - | guanylate kinase VF_0107 125849 - 126274 + | hypothetical protein TERM 142 126272 - 126285 + F 74 -2.4 -5.52023 | AAACATTATGATGAG TAGC CTTAAC GCTA TTTTTTATTGGTAAT TERM 143 126341 - 126303 - f 100 -19.1 -3.63515 | opp_overlap 126308, overlap 126307 TTTTATTGGTAATAA TAAAGCGCCCCTGTAGT GATTA ACTACAGGGGCGTTTTA ATAACGCATTGATGA TERM 144 126337 - 126307 - f 100 -15.5 -4.45068 | opp_overlap 126308, overlap 126303 ATTGGTAATAATAAA GCGCCCCTGTAGT GATTA ACTACAGGGGCGT TTTAATAACGCATTG TERM 145 126308 - 126336 + F 100 -19 -4.25848 | opp_overlap 126307 126303 TTGGTAATAATAAAG CGCCCCTGTAGT GATTA ACTACAGGGGCG TTTTAATAACGCATT VF_0108 126471 - 126851 + | hypothetical protein TERM 146 126891 - 126912 + F 80 -2.9 -5.67063 | overlap 126892 126894 126895 ACACCACAATTATAT CTATGCGTG AATA CACGCGTGC TTTTTTTGTCATGCA yedA 127083 - 128015 + | inner membrane protein TERM 147 128041 - 128071 + T 89 -11.3 -3.40082 | opp_overlap 128047, overlap 128047 GTTATTGATAGCGAT AAAAAAGCCCTGA TAAGT TCAGGGCTTTTTA TTAATCTATATTTAG TERM 148 128047 - 128065 + T 100 -10.3 -5.17744 | opp_overlap 128047, overlap 128041 GATAGCGATAAAAAA GCCCTGA TAAGT TCAGGGC TTTTTATTAATCTAT TERM 149 128065 - 128047 - T 100 -10.3 -5.29782 | opp_overlap 128047 128041 GATAGCGATAAAAAA GCCCTGA TAAGT TCAGGGC TTTTTATTAATCTAT yicC 128960 - 128097 - | hypothetical protein rph 129121 - 129837 + | ribonuclease PH TERM 150 129848 - 129868 + F 100 -10.5 -5.76633 | opp_overlap 129850 AATAATTGATTTTAA TAGCTCCTA ATT TAGGGGCTA TTTTTTTATGTATAA TERM 151 129908 - 129887 - f 77 -5.2 -4.87665 | gap 1, overlap 129889 129894 TTTTATGTATAAAAA GAGCAAAGC AGACG GCTTTGC-C TTGAGAGCGCTGCGC TERM 152 129907 - 129889 - f 82 -8.9 -4.06182 | overlap 129887 129894 TTATGTATAAAAAGA GCAAAGC AGACG GCTTTGC CTTGAGAGCGCTGCG pyrE 130080 - 130727 + | orotate phosphoribosyltransferase VF_0113 131518 - 130754 - | chromosome partitioning protein ParA TERM 153 130785 - 130807 + g 100 -9.2 -5.81032 | opp_overlap 130785 AAAATAGAAGAGTAA GTGGTTGATG TCG TATCAGCCAC TTTTTTTTGCGCTTC ompR 131703 - 132422 + | osmolarity response regulator envZ 132855 - 134159 + | osmolarity sensor protein TERM 154 134328 - 134354 + T 100 -15.2 -5.1971 | opp_overlap 134328 GTAAAAAATAAAAAA GACCGCAGATGA TAA TCACCTGCGGTC TTTTTCGTTTTTACT TERM 155 134354 - 134328 - T 100 -17.4 -6.04324 | opp_overlap 134328 GTAAAAAATAAAAAA GACCGCAGATGA TAA TCACCTGCGGTC TTTTTCGTTTTTACT yicE 135797 - 134406 - | transporter gntX 136880 - 136161 - | gluconate periplasmic binding protein bioH 136909 - 137682 + | carboxylesterase of pimeloyl-CoA synthesis VF_0119 137709 - 138188 + | hypothetical protein yhgF 140699 - 138384 - | transcriptional accessory protein TERM 156 139245 - 139262 + g 70 -2.7 -5.12617 | overlap 139248 GGCGTTTACACAGTC TTCGATG ACGG CATCTAA TTTTTTCGCTAGTTG TERM 157 140842 - 140803 - R 83 -10.2 -3.28712 | opp_overlap 140810 GCTTCGCTGGCAGAA TTCAGAGGTGATCGCT TTAATTTC AACGATCACTTCTGAA CTCTGCAAGGGAGCT greB 141400 - 140927 - | transcription elongation factor GreB htrB2 142357 - 141419 - | lipid A biosynthesis lauroyl acyltransferase slmA 142972 - 142382 - | division inhibitor dfp 144356 - 143127 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase yicR 144577 - 145251 + | DNA repair protein RadC rpmB 145447 - 145683 + | 50S ribosomal protein L28 TERM 158 145660 - 145678 + F 77 -8.8 -3.54129 | GTTCTTGCAGATATG CGTGCTCG TGG CGAGAACG TTTAAGAGGAATCTG rpmG 145698 - 145865 + | 50S ribosomal subunit protein L33 TERM 159 145877 - 145858 - f 71 -3 -5.05712 | gap 1, opp_overlap 145862, overlap 145862 ACAAAGAAGCAAAAA TCAAGTAAT TCG ATTACT-GA TTGCAACTTTGATAA TERM 160 145919 - 145902 - f 83 -8.4 -4.4595 | opp_overlap 145902, overlap 145897 TGATAAAATTGAAAA CCCAGC CTTGTT GCTGGG TTTTTTTTTGCGTGA TERM 161 145902 - 145919 + F 100 -8.4 -6.11644 | opp_overlap 145902 145897 TGATAAAATTGAAAA CCCAGC CTTGTT GCTGGG TTTTTTTTTGCGTGA VF_0129 146326 - 146781 + | hypothetical protein mutM 147021 - 147839 + | formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase VF_0131 147864 - 149843 + | phosphoglycerol transferase TERM 162 149874 - 149855 - T 84 -12.2 -2.79831 | opp_overlap 149855, overlap 149844 TTAATCGTTATCATA GGCCACTT ATTT AAGTGGCC TTTTTTAACGTATTA TERM 163 149855 - 149874 + T 100 -12.2 -5.09173 | opp_overlap 149855 149844 TTAATCGTTATCATA GGCCACTT ATTT AAGTGGCC TTTTTTAACGTATTA coaD 150375 - 149887 - | phosphopantetheine adenylyltransferase VF_0133 151396 - 150368 - | glycosyltransferase VF_0134 152184 - 151399 - | alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase VF_0135 153237 - 152194 - | ADP-heptose--LPS heptosyltransferase III TERM 164 153466 - 153456 - g 88 -4 -5.73978 | ATTAGAAACAAAAAA CAAA CCA TTTG GTATGACGATTCAAT wavC 153432 - 154136 + | 3-deoxy-D-manno-octulosonic-acid kinase TERM 165 154545 - 154576 + G 71 -9.6 -2.81173 | gap 1, opp_overlap 154552, overlap 154552 CAAGTCGTGAGCTTC CCATTAATCAC-GTG GTT CACCGTGATTGGTGG TGTACTAGCCTTAGT VF_0137 154245 - 156020 + | choline-sulfatase waaA 157444 - 156188 - | 3-deoxy-D-manno-octulosonic-acid transferase rfaF 158466 - 157441 - | ADP-heptose:LPS heptosyltransferase II VF_0140 158549 - 159739 + | UDP-N-acetylglucosamine 4,6-dehydratase VF_0141 159763 - 160908 + | UDP-bacillosamine synthetase TERM 166 160994 - 161009 + G 80 -4.7 -5.1925 | opp_overlap 160992 160994 TTCACAGGAACAAGA GCAGA GTATGG TCTGC TTTTTTGGCTTCTAA neuC 160943 - 162127 + | UDP-N-acetylglucosamine 2-epimerase TERM 167 162417 - 162445 + G 70 -2.6 -5.1675 | gap 1, overlap 162423 GGGATTGAGTTTCTA TCTACAGCTTTTG ATTC TGAAAGCT-TAGA TTTTTTAGTGAATGA neuB 162135 - 163208 + | N-acetylneuraminate synthase neuD 163201 - 163845 + | sialic acid biosynthesis protein NeuD TERM 168 164424 - 164396 - g 74 -6.1 -4.32579 | opp_overlap 164400 164403, overlap 164392 164397 ACATGCCAGAACAAA TTCAGAACCAT TTTGGTG ATGGTTCTGAG TTAGGAGTAAAGATC TERM 169 164423 - 164397 - g 73 -9.6 -3.18824 | opp_overlap 164400 164403, overlap 164396 164392 CATGCCAGAACAAAT TCAGAACCAT TTTGGTG ATGGTTCTGA GTTAGGAGTAAAGAT VF_0145 163861 - 164919 + | mannose-1-phosphate guanyltransferase TERM 170 165789 - 165776 - g 70 -3.1 -4.84359 | TGAGTGGGACAAAAA CCAAA TGTA TCTGG CAATGGTGACTGATT VF_0146 164925 - 165905 + | oxidoreductase neuA 165921 - 166610 + | acylneuraminate cytidylyltransferase TERM 171 166953 - 166969 + G 75 -3 -5.33405 | ATGAAAATCTATCAT TGCATT TAGGT AGTGCA TTTTTATTTACTCAG ptmA 166610 - 167380 + | flagellin modification protein A VF_0149 167389 - 168558 + | glycosyltransferase TERM 172 168536 - 168576 + T 89 -9.3 -4.26881 | opp_overlap 168546, overlap 168546 GGAAAGCGTTAATTG AAAATAAAAATGTCATTGT TTA GCAATGACATTTTTAGTTA TTTGATTTTATCAAA TERM 173 168566 - 168546 - T 93 -8.4 -5.49568 | opp_overlap 168546 168536 AATTGAAAATAAAAA TGTCATTG TTTAG CAATGACA TTTTTAGTTATTTGA TERM 174 168546 - 168566 + T 100 -9.1 -5.04356 | opp_overlap 168546, overlap 168536 AATTGAAAATAAAAA TGTCATTGT TTA GCAATGACA TTTTTAGTTATTTGA VF_0150 169551 - 168574 - | hypothetical protein waaL 170787 - 169555 - | O-antigen ligase TERM 175 170553 - 170541 - G 70 -3.5 -4.90778 | TTGATCTAAATAAAA TTATT ATA AATAA ACTAGTGATTAATAT rfaD 171756 - 170815 - | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 176 171619 - 171642 + g 74 -3.8 -5.10077 | opp_overlap 171624, overlap 171620 CATGTAATCAGTGAT ATCAAGATCC ACTA GGTTCTTGAA TTTTTTACCATCTTT rjg 172424 - 173896 + | right junction gene, LPS locus TERM 177 174190 - 174206 + G 71 -6.6 -4.07133 | CTCAAGGTTCTGCAG CTGAGT TAATC ACTCAG TTATTTATAGGGATA VF_0154 173982 - 174335 + | hypothetical protein TERM 178 174995 - 174981 - g 79 -8.6 -4.04174 | opp_overlap 174981 TGTCAGATAATGAAA TTACCG AAG CGGTAA TCTATCAAGGCATGT VF_0155 174458 - 175102 + | TetR family transcriptional regulator TERM 179 175237 - 175211 - T 71 -7.4 -3.67634 | opp_overlap 175209 175204 175211, overlap 175209 GAGGAGGTCAAAAGA CTAAGAGCAA TATACCC TTGCTCCTAG CTCTTGCTTCTAGTC wbfB 177545 - 175293 - | WbfB protein VF_0158 178310 - 177549 - | hypothetical protein TERM 180 177884 - 177872 - G 86 -7.7 -4.83615 | opp_overlap 177871 GAGGGTGCACAAAAA GCTGA TAA TCAGC ATTAAGTATAGGGTT wbfD 179027 - 178353 - | WbfD protein TERM 181 179132 - 179087 - R 81 -6.2 -4.9755 | gap 1 AGATATAAGTAAAAA GGGACGAAAG-TGAGAGCCTA GAATT TAGTTCCTCATCCCTCGTCCC CTGTATCTGAAACTA VF_0161 179399 - 179151 - | hypothetical protein TERM 182 179569 - 179594 + H 82 -3.3 -5.626 | TGAAGCATATTTTGT TGCTATTGATA GAAT TATCTATTGCA TTTTTTTGTAGCGTA TERM 183 180323 - 180303 - g 71 -6.2 -4.28432 | gap 1 AAGTGGAAGGCAAAA CCGTTCGTG AAAT CA-GAACGG AAATTGCTCAAAAAT gfcE 179873 - 181024 + | exopolysaccharide export protein VF_0163 181185 - 181535 + | hypothetical protein TERM 184 181588 - 181552 - f 95 -12.3 -3.61371 | overlap 181540 AAACGCTAGCTTAAA GGGACGAGTATAAGCAT TTT AAGCTCTTACTCGCCCC TTAAACCTAGTCCCT etp 181890 - 182330 + | phosphotyrosine-protein phosphatase wzc 182615 - 184777 + | protein-tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis TERM 185 185099 - 185078 - g 100 -13.1 -4.0162 | overlap 185095 TTTTCAGAGCACAAA CCAGATGCA GTAA TGCATCTGG CGGCAGAGTCTCATG TERM 186 185607 - 185583 - g 72 -10.1 -2.69319 | opp_overlap 185584, overlap 185582 185605 AAGTGGTGACAGAAG GTGTTGTAGGT GAA ACCTACAACAT TGGTGGACACAATGA TERM 187 185584 - 185606 + G 93 -13.6 -3.14344 | opp_overlap 185583 185582 185605 AGTGGTGACAGAAGG TGTTGTAGGT GAA ACCTACAACA TTGGTGGACACAATG rffG 184859 - 185953 + | dTDP-glucose 4,6-dehydratase rffH 185953 - 186852 + | glucose-1-phosphate thymidylyltransferase rfbC 186852 - 187409 + | dTDP-4-deoxyrhamnose-3,5-epimerase TERM 188 187700 - 187717 + G 72 -8.5 -3.51406 | opp_overlap 187699 187700 187702, overlap 187679 187696 TGAATCAAAATGAAT CATCTGA ATAT TCAGATG TTACTATTTGTAGTA rmlB 187411 - 188226 + | dTDP-glucose-4,6-dehydratase rfbX 188230 - 189483 + | polisoprenol-linked O-antigen transporter TERM 189 189469 - 189483 + F 76 -3.6 -5.21709 | opp_overlap 189480 GTTATAAAATTAAAA TTATTG AAG CAGTAA TTTTTTACTATGGAG VF_0171 189505 - 190824 + | hypothetical protein VF_0172 190805 - 191437 + | O-acetyltransferase VF_0173 191442 - 192389 + | hypothetical protein VF_2581 192382 - 193521 + | hypothetical protein VF_0174 193521 - 194513 + | beta-D-GlcNAc beta-1,3-galactosyltransferase VF_0175 194489 - 195304 + | glycosyltransferase VF_0176 195317 - 196114 + | 2-dehydro-3-deoxyphosphooctonate aldolase VF_0177 196117 - 196680 + | 3-deoxy-manno-octulosonate-8-phosphatase TERM 190 197142 - 197122 - g 76 -9.1 -3.68619 | CCTAATGTAGTTAAA GCCATTATA GGT TATAACGGC AGAGCACTTTATTTC VF_0178 196684 - 197436 + | 3-deoxy-manno-octulosonate cytidylyltransferase kpsF 197437 - 198369 + | arabinose-5-phosphate isomerase TERM 191 198550 - 198532 - f 73 -8.8 -3.29972 | opp_overlap 198532, overlap 198530 198528 ATGCGAGCAAATAGA CCACGTAG CAA CTGCGTGG TTTTATGCAATACCC TERM 192 198532 - 198550 + F 100 -11 -4.4009 | opp_overlap 198532 198530 198528 ATGCGAGCAAATAGA CCACGTAG CAA CTGCGTGG TTTTATGCAATACCC rfe 198615 - 199706 + | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase TERM 193 199777 - 199741 - f 79 -9.6 -3.22135 | opp_overlap 199746, overlap 199746 TAGATAATCAATACA CAAAAGCGGATATAAC TTAAG GTTGTATCCGCTTTTT TTGTCTTATACTCTC TERM 194 199746 - 199772 + F 100 -12.4 -5.84432 | opp_overlap 199741 199746 AATCAATACACAAAA GCGGATATAACT TAA GGTTGTATCCGC TTTTTTTGTCTTATA TERM 195 199772 - 199746 - f 100 -9.5 -4.70453 | opp_overlap 199746, overlap 199741 AATCAATACACAAAA GCGGATATAAC TTAAG GTTGTATCCGC TTTTTTTGTCTTATA ddhD 200281 - 201246 + | CDP-6-deoxy-delta-3,4-glucoseen reductase ddhA 201269 - 202042 + | glucose-1-phosphate cytidylyltransferase ddhB 202046 - 203128 + | CDP-glucose 4,6-dehydratase TERM 196 203438 - 203422 - g 72 -9.5 -3.06315 | opp_overlap 203420 TTAACAGCGTTAACA TCACCAA AAC TTGGTGA TCGTCAATTAAAACC ddhC 203128 - 204441 + | CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase TERM 197 205894 - 205872 - g 76 -9.3 -3.62275 | overlap 205875 AGTTATTATTTTAAA TAACCATTC ATTAG GAATGGTTA AGAATTTTCAAGATA VF_0185 204457 - 206157 + | acetolactate synthase, large subunit VF_0186 206135 - 207157 + | dTDP-glucose 4,6-dehydratase VF_0187 207231 - 208160 + | glycosyltransferase VF_0188 208195 - 209184 + | glycosyltransferase VF_0189 209171 - 210448 + | hypothetical protein TERM 198 210576 - 210590 + G 85 -2.9 -5.79526 | opp_overlap 210576 TATGCTAAAAATAAT CATAA CTTTA TTATG TTTTTTTTGGAGTCT VF_0190 210438 - 211541 + | hypothetical protein fnlA 211619 - 212656 + | UDP-N-acetylglucosamine 4,6-dehydratase TERM 199 212805 - 212843 + G 70 -9.7 -2.65354 | overlap 212801 212800 GTCGGCAGATTTTAT TTATCATTTAGCGGGTG TTAAT CGTCCGCAAAATGATGA TGAGTTTAAACTAGG fnlB 212656 - 213759 + | UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase rffE 213769 - 214899 + | UDP-N-acetyl glucosamine-2-epimerase wbjE 214868 - 216112 + | glycosyl transferases group 1-like protein VF_0195 216109 - 217020 + | UDP-N-acetyl-D-quinovosamine 4-epimerase VF_0196 217017 - 217565 + | undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase VF_0197 217580 - 219487 + | UDP-D-quinovosamine 4-dehydrogenase TERM 200 221057 - 221084 + F 100 -10.6 -5.95286 | opp_overlap 221055 221057 GACTTAAAAGCAAGA GCGGACATGACT AATC GGTTGTGTCCGC TTTTTTATTTTTGGT VF_0200 221197 - 222150 + | acetyltransferase VF_0201 222273 - 223280 + | UDP-glucose 4-epimerase TERM 201 223528 - 223504 - T 100 -16.5 -5.27779 | opp_overlap 223504 TCTAAGATCAAAAAA GCCCACAGGCT ATA AACCTGTGGGC TTTTTTATTTCATCG TERM 202 223504 - 223528 + T 100 -14.3 -5.68438 | opp_overlap 223504 TCTAAGATCAAAAAA GCCCACAGGCT ATA AACCTGTGGGC TTTTTTATTTCATCG gpmM 225140 - 223608 - | phosphoglyceromutase TERM 203 225462 - 225509 + r 77 -9.4 -3.22448 | gap 1, overlap 225473 GGGGGTGTTGGTGAT GAGCTAGGTTTCAGGGGGA CTTGCTTTTGA TCTTCCTGAAACCT-GCTC TTCCTAGCTCTTCGT VF_0203 227012 - 225513 - | Na(+) driven multidrug efflux pump groS 227164 - 227454 + | co-chaperonin GroES groL 227532 - 229178 + | chaperonin GroEL TERM 204 229228 - 229257 + T 77 -3 -5.42265 | gap 2 CGTTCAAATTGAGAG CCGAGGTTAACTTA TTCG TAAGT-G-CCTCGG TTTTTTATGCTTTGA TERM 205 229462 - 229439 - T 100 -7.4 -6.55664 | opp_overlap 229439 TAAAACAAAAAAAAA CCGCAGATGC TTTC ACATCCACGG TTTCAAATTATCCAC tpiA 230304 - 229534 - | triosephosphate isomerase TERM 206 230884 - 230846 - g 70 -8.2 -3.62046 | GTACTTGCTGAACAA GCCAGTCACATTGATAGC TTA ACTATCAACGTGCGTGAC ATGGAACATGAGAGT hpcD 230573 - 230917 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase VF_0208 231285 - 230932 - | hypothetical protein TERM 207 231937 - 231914 - R 100 -7.4 -6.34616 | opp_overlap 231914 TTAAAACAAAAAAAA CCGCAGATGC TTTC ACATCCACGG TTTCAAATTTATCGC glpX 233017 - 232010 - | fructose 1,6-bisphosphatase II TERM 208 232275 - 232286 + g 79 -5.8 -4.87592 | TTTAGTTCAGCTTCA CCGT GGAT ACGG TTTTCTTCTGTATCG VF_0210 233385 - 233627 + | transcriptional regulator TERM 209 233703 - 233726 + T 100 -11 -6.09196 | opp_overlap 233703 TGAATTATTTTGAAA CCGTAGGTGT GGAA GCACCTGCGG TTTTTTTATTTTAAG TERM 210 233726 - 233703 - T 73 -8.1 -3.59315 | opp_overlap 233703 TGAATTATTTTGAAA CCGTAGGTG TGGAAG CACCTGCGG TTTTTTTATTTTAAG rraA 234612 - 234115 - | ribonuclease activity regulator protein RraA menA 235645 - 234737 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 211 235659 - 235686 + r 74 -5.8 -4.56597 | gap 1, opp_overlap 235659 235666 ATAGCATCGCAAAAA TAGTGAATAG-AG TCT CTATTATTCACTA TTTTTGGAAGAACCC prkB 236597 - 235728 - | phosphoribulokinase VF_0215 236960 - 236700 - | hypothetical protein yheT 237956 - 236988 - | putative hydrolase TERM 212 237938 - 237928 - G 75 -8.2 -4.04206 | TGAGCGTTAGATAAA CCGG TAG CCGG TGTAAAGTTATCCAT VF_0217 238468 - 237962 - | hypothetical protein TERM 213 238052 - 238065 + g 72 -3.1 -5.1356 | CGTTAATAAACTTAT CTGAT TATT ATCGG TTTTTATTACTAAAG TERM 214 238435 - 238398 - G 79 -8.5 -4.1021 | opp_overlap 238397, overlap 238406 TGGGATAATGAGAAA CACCAAAAGGCTTCT TGGGTAAT AGAAGCCAATTGGTG CTCATTCAAAGGAAT TERM 215 238427 - 238406 - G 73 -5.9 -4.53036 | opp_overlap 238397, overlap 238398 TGAGAAACACCAAAA GGCTTCT TGGGTAAT AGAAGCC AATTGGTGCTCATTC yheS 240383 - 238452 - | ABC transporter ATP-binding protein TERM 216 238626 - 238644 + g 77 -10.4 -3.42621 | CTCTTCTTCTGCTTG GCTTAATG CTT CATTAAGC TTATCCATTCGAGTT TERM 217 239507 - 239519 + g 86 -7.7 -4.95854 | ATGGGTTATCTAATT GTGCT GGT AGCAC TTTTTCCATTTTTTC TERM 218 239607 - 239619 + g 72 -3.4 -5.00846 | GTCAATGTATGACTG CATG TGCGC CATG TTTTTCTGCTGTTTC kefG 240600 - 241142 + | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 219 241404 - 241394 - g 73 -6.8 -4.28049 | overlap 241398 TGGAAAATGCGAAAA CCGA TAA TCGG ATTAGGAGGAAGCCA kefB 241142 - 242932 + | potassium:proton antiporter VF_0222 242968 - 243162 + | hypothetical protein slyD 243219 - 243872 + | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) TERM 220 243884 - 243907 + T 100 -9.6 -6.20267 | opp_overlap 243884 GTAGAAATTAAAAAA CCGTAGGTGC TGAT GCATTTACGG TTTTTTTGTTTTTAG TERM 221 243907 - 243884 - T 84 -5.2 -5.42514 | opp_overlap 243884 GTAGAAATTAAAAAA CCGTAGGTGC TGAT GCATTTACGG TTTTTTTGTTTTTAG slyX 244215 - 243991 - | hypothetical protein VF_0225 245228 - 244215 - | vegetatible incompatibility protein HET-E-1 TERM 222 245433 - 245417 - H 88 -7.3 -4.91987 | opp_overlap 245416 AATTGAATAAGAAAA TTGAGGC AGG ACCTCAA ATAATCTGGAGTTTT TERM 223 245484 - 245496 + G 77 -6.3 -4.52897 | overlap 245486 AGTGTCGTTACTTGC TGCAA CTG TTGCA TTTGTTGTTGGTTGT fkpA 245452 - 246246 + | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) TERM 224 246297 - 246314 + F 100 -10.5 -5.83211 | opp_overlap 246296 AGATCACTGAATTAG CCCCGGC ACTT GCTGGGG TTTTTTATTTTCATG yheO 246417 - 247121 + | DNA-binding transcriptional regulator tusD 247118 - 247510 + | hypothetical protein tusC 247545 - 247901 + | sulfur transfer protein complex, TusC subunit tusB 247902 - 248192 + | sulfur transfer protein complex, TusB subunit rpsL 248356 - 248730 + | 30S ribosomal protein S12 rpsG 248825 - 249295 + | 30S ribosomal protein S7 TERM 225 249300 - 249329 + GF 100 -12.3 -4.6856 | gap 1, opp_overlap 249275 249303, overlap 249303 ACCGCTGGTAATACC G-AAGGTGCAGCAG TCC TTGCTGCACCTTAC TTTTTCCCCTATTTA TERM 226 249303 - 249325 + GF 100 -14.2 -3.81926 | opp_overlap 249303, overlap 249300 GCTGGTAATACCGAA GGTGCAGCAG TCC TTGCTGCACC TTACTTTTTCCCCTA TERM 227 249325 - 249303 - gf 93 -13.5 -3.1855 | opp_overlap 249303 249300 GCTGGTAATACCGAA GGTGCAGCA GTCCT TGCTGCACC TTACTTTTTCCCCTA VF_2583 249261 - 249449 + | hypothetical protein TERM 228 250991 - 251011 + G 83 -6.1 -5.06414 | opp_overlap 250996, overlap 250996 251007 TGAAAATCGAACCAT CAGAACCAG ATG CTGGTTTCG TTTTTGTTGACGAAA TERM 229 250996 - 251006 + G 76 -6.8 -4.43037 | opp_overlap 250996, overlap 250991 ATCGAACCATCAGAA CCAG ATG CTGG TTTCGTTTTTGTTGA fusA 249427 - 251523 + | elongation factor G tufB 251632 - 252816 + | elongation factor Tu TERM 230 252848 - 252877 + F 93 -13.1 -3.44146 | opp_overlap 252855, overlap 252855 GATATACCGCATGAC TAAAAAAGGAAGC TTCG GCTTCCTTTTTTG TTGCTTGTAAGAAAA TERM 231 252855 - 252870 + F 95 -9 -5.57396 | opp_overlap 252855, overlap 252848 CGCATGACTAAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTGCTTGT TERM 232 252870 - 252855 - f 95 -9 -5.1861 | opp_overlap 252855 252848 CGCATGACTAAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTGCTTGT TERM 233 253333 - 253314 - g 72 -10 -2.61322 | opp_overlap 253313 253314, overlap 253313 253311 253318 AGATCGTTGAAACAG CTAAGCGC ACTG GCGCTCAG GTTCGTGGTCCTATT rpsJ 253229 - 253540 + | 30S ribosomal protein S10 rplC 253553 - 254182 + | 50S ribosomal subunit protein L3 TERM 234 254505 - 254518 + G 71 -6.7 -4.11304 | overlap 254496 AAAAATGTACCGTGG TGCTC TTAA GAGCA TTCTTTCTGAGTTAG rplD 254200 - 254802 + | 50S ribosomal protein L4 rplW 254799 - 255101 + | 50S ribosomal protein L23 TERM 235 255377 - 255395 + G 73 -10.4 -2.79273 | opp_overlap 255363 255375 255374, overlap 255376 255379 ATACGATCCAAACCG TAGTGCAA ACA TTGCACTA GTTCTGTTCGCAGAC rplB 255117 - 255941 + | 50S ribosomal protein L2 rpsS 255961 - 256239 + | 30S ribosomal protein S19 rplV 256250 - 256582 + | 50S ribosomal protein L22 TERM 236 256875 - 256860 - g 83 -9 -4.08939 | overlap 256850 GAAGACGTAGAGAAA CTACGC GCAG GCGTAG CAAAAATCGCAGGTG rpsC 256602 - 257300 + | 30S ribosomal protein S3 rplP 257312 - 257722 + | 50S ribosomal protein L16 rpmC 257722 - 257913 + | 50S ribosomal protein L29 rpsQ 257913 - 258167 + | 30S ribosomal protein S17 TERM 237 258190 - 258222 + F 100 -11.4 -5.10497 | ATTCTATAGCGACTT TAAGCGGCTCCGAA TTTTT TTTGGGGCCGTTTA TTTTTTGACTACCTT TERM 238 258265 - 258249 - f 77 -5.1 -5.08824 | opp_overlap 258249 CCTTTATTTAAAAAA TGGTGAT ACA ATCCCCA TCCCTTTTAAAGAGG rplN 258332 - 258703 + | 50S ribosomal subunit protein L14 TERM 239 258876 - 258849 - g 83 -6.3 -5.01732 | overlap 258851 AACCTTGTTAAAAAA CACCAAAAGCC TGTTCC GGCTCTTGGTC AACAAGGCGGTATTG TERM 240 258874 - 258851 - g 83 -8.9 -4.13561 | overlap 258849 CCTTGTTAAAAAACA CCAAAAGCC TGTTCC GGCTCTTGG TCAACAAGGCGGTAT rplX 258717 - 259031 + | 50S ribosomal protein L24 rplE 259046 - 259582 + | 50S ribosomal protein L5 rpsN 259604 - 259909 + | 30S ribosomal protein S14 rpsH 259939 - 260331 + | 30S ribosomal protein S8 rplF 260344 - 260877 + | 50S ribosomal protein L6 rplR 260887 - 261240 + | 50S ribosomal protein L18 rpsE 261255 - 261755 + | 30S ribosomal subunit protein S5 rpmD 261761 - 261940 + | 50S ribosomal protein L30 rplO 261946 - 262380 + | 50S ribosomal subunit protein L15 TERM 241 262387 - 262370 - f 77 -9.9 -3.03124 | overlap 262381 262382 CTGCAGGCGGTAAGA TCGAGGA ATAA TCCTCGA AGGATGAGGTACAAT TERM 242 262823 - 262859 + G 77 -9.5 -3.58905 | opp_overlap 262822 262825 AACCGGTCTACCAAG CATGATTCCAGGGTTAG TTG CTAACCCTGACATGATG TTCTATCTGACAGCT secY 262401 - 263732 + | preprotein translocase subunit SecY rpmJ 263763 - 263876 + | 50S ribosomal protein L36 TERM 243 263934 - 263906 - f 87 -11.7 -3.32498 | opp_overlap 263906 263908 TACTTGATATATTAA GTTAGGCCGAGTA TTA TTCTCGGCCTACC TTTTGTGTGCAAAAG TERM 244 263906 - 263934 + F 100 -11.7 -4.52589 | opp_overlap 263906, overlap 263908 TACTTGATATATTAA GTTAGGCCGAGTA TTA TTCTCGGCCTACC TTTTGTGTGCAAAAG TERM 245 263908 - 263932 + F 87 -12.9 -2.58418 | opp_overlap 263906, overlap 263906 CTTGATATATTAAGT TAGGCCGAGTA TTA TTCTCGGCCTA CCTTTTGTGTGCAAA rpsM 264026 - 264382 + | 30S ribosomal protein S13 rpsK 264404 - 264793 + | 30S ribosomal protein S11 rpsD 264825 - 265445 + | 30S ribosomal protein S4 rpoA 265469 - 266458 + | DNA-directed RNA polymerase subunit alpha TERM 246 266540 - 266554 + G 79 -10 -3.54543 | opp_overlap 266538 266535 266549 AACCGCAACAGCAGC CATCGC AAA GCGATG TTTAGCAACATGGCT rplQ 266495 - 266875 + | 50S ribosomal protein L17 TERM 247 266889 - 266926 + T 100 -13.7 -3.62591 | opp_overlap 266899, overlap 266899 AATCAGAATAAGCTT TAAGAAAAAACCGAGTC TTAG GACTCGGTTTTTTTGTA TTTGGACATTATAAA TERM 248 266916 - 266899 - T 100 -11.3 -5.45652 | opp_overlap 266889 266899 AGCTTTAAGAAAAAA CCGAGTC TTAG GACTCGG TTTTTTTGTATTTGG TERM 249 266899 - 266916 + T 100 -11.3 -5.88197 | opp_overlap 266899, overlap 266889 AGCTTTAAGAAAAAA CCGAGTC TTAG GACTCGG TTTTTTTGTATTTGG fbp 267972 - 266962 - | fructose-1,6-bisphosphatase TERM 250 267642 - 267652 + g 72 -3.2 -5.08601 | GATCCATTAATACAA CGTA TTT TGCG TTTTTGTTGAGCTCC TERM 251 268020 - 268030 + H 77 -5.4 -4.98911 | CAACGCGAAGTCGGG TCAG GTA CTGA TTTATTTTTATAGTA mpl 268157 - 269536 + | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 252 270025 - 270038 + G 71 -3.8 -4.91109 | opp_overlap 270010 GGGGCGACAATTATG CCTG CTGCCC CAGG TTTTTATCATCAACC ubiX 269539 - 270156 + | aromatic acid decarboxylase thiB 270371 - 271387 + | thiamine transporter substrate binding subunit TERM 253 271400 - 271416 + F 75 -5.1 -4.90302 | opp_overlap 271400 TAATTGGTGTAATAA GGAGC CACTAGT GCTCC TTTATTTTATTCATG thiP 271429 - 273033 + | thiamine transporter membrane protein thiQ 273033 - 273737 + | thiamine ABC transporter, ATP-binding protein ThiQ/SfuC TERM 254 276048 - 276038 - g 73 -5.4 -4.54343 | ATAAAGCGAAAGAAA TTGC AGA GCAA ATTGCGGCAACCGAC hepA 273931 - 276789 + | ATP-dependent helicase HepA TERM 255 276886 - 276848 - f 83 -10.4 -3.30798 | opp_overlap 276847, overlap 276846 276849 276851 276881 276884 CATAATTAAGTAACA TCATGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCATGC CTATAGTGAGTATAA TERM 256 276885 - 276849 - f 89 -13.9 -2.57756 | opp_overlap 276847, overlap 276848 276846 276851 276881 276884 ATAATTAAGTAACAT CATGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCATG CCTATAGTGAGTATA TERM 257 276883 - 276851 - f 81 -10.7 -2.81814 | opp_overlap 276847, overlap 276849 276848 276846 276881 AATTAAGTAACATCA TGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCA TGCCTATAGTGAGTA TERM 258 277292 - 277270 - g 75 -10 -3.17622 | opp_overlap 277276, overlap 277268 277271 277276 GATTGGGAGAATAGA CCAAAACAGA AAG TCTGTTTTGA GCATGGCAAACCTTC TERM 259 277291 - 277271 - g 79 -11.3 -2.50252 | opp_overlap 277276, overlap 277270 277268 277276 ATTGGGAGAATAGAC CAAAACAGA AAG TCTGTTTTG AGCATGGCAAACCTT TERM 260 277286 - 277276 - g 70 -5.4 -4.44819 | opp_overlap 277276, overlap 277271 277270 277268 GAGAATAGACCAAAA CAGA AAG TCTG TTTTGAGCATGGCAA rluA 276904 - 277641 + | pseudouridine synthase for 23S rRNA and tRNAphe TERM 261 277647 - 277680 + T 82 -7.5 -4.52781 | opp_overlap 277650, overlap 277649 277650 ATCATCTTAATAAAA AAATCAGTTCGAGAT GAAT GTCTCGAACTGAATC TTTTCATTATGGTTA TERM 262 277649 - 277678 + T 83 -10.1 -3.85899 | opp_overlap 277650, overlap 277647 277650 CATCTTAATAAAAAA ATCAGTTCGAGAT GAAT GTCTCGAACTGAA TCTTTTCATTATGGT TERM 263 277677 - 277650 - T 100 -12.9 -5.80364 | opp_overlap 277649 277647 277650 ATCTTAATAAAAAAA TCAGTTCGAGA TGAATG TCTCGAACTGA ATCTTTTCATTATGG TERM 264 277650 - 277677 + T 89 -13.6 -2.90455 | opp_overlap 277650, overlap 277649 277647 ATCTTAATAAAAAAA TCAGTTCGAGAT GAAT GTCTCGAACTGA ATCTTTTCATTATGG VF_0272 278130 - 277693 - | universal stress protein TERM 265 278148 - 278167 + r 72 -9.3 -2.57192 | opp_overlap 278146 TTTTATTACCTAATT TGGGGAG ATGATA CTCCCCA TAGATTCCATTCAAT VF_0273 280761 - 278182 - | transporter TERM 266 280309 - 280291 - G 78 -7.4 -4.38927 | GGTGTATAGAAGAAA CACGGCTG CCA CAACCATG AGTGGTGGACCTAAT TERM 267 280553 - 280542 - G 86 -4.4 -5.47399 | TGAATGCTAAAAAAA TAGC AAAA GCTA AGTGTATAGATCGCG TERM 268 281039 - 281014 - R 90 -11.3 -3.71888 | opp_overlap 281019, overlap 281019 281031 AAGTAGAGCGAAGAA TAAAAGAGGCC ATAT GACCTCTTTTA TCTAAAGAAGTGTTT TERM 269 281034 - 281019 - R 83 -6.8 -4.91084 | opp_overlap 281019, overlap 281014 281031 GAGCGAAGAATAAAA GAGGCC ATAT GACCTC TTTTATCTAAAGAAG VF_0274 282029 - 281055 - | immunogenic protein TERM 270 282321 - 282345 + r 89 -11.6 -3.36096 | opp_overlap 282321, overlap 282316 TATAAATAGGAGGAA GCACTTTATG AGAAG CATAAAGTGC TTAAATTTATGTGAT TERM 271 282345 - 282321 - R 87 -11.6 -3.31691 | opp_overlap 282321 282316 TATAAATAGGAGGAA GCACTTTATG AGAAG CATAAAGTGC TTAAATTTATGTGAT argR 282830 - 282360 - | arginine repressor mdh 283104 - 284039 + | malate dehydrogenase TERM 272 284102 - 284068 - T 100 -23.2 -4.02051 | opp_overlap 284068 284072, overlap 284072 CATTAATTGAAAGAA TAAAGGGGCAGATAGT CTA ACTATCTGCCCCTTTA TTATGTTTGAAAGAA TERM 273 284068 - 284102 + T 100 -23.2 -3.81488 | opp_overlap 284068 284072, overlap 284072 CATTAATTGAAAGAA TAAAGGGGCAGATAGT CTA ACTATCTGCCCCTTTA TTATGTTTGAAAGAA TERM 274 284072 - 284098 + T 100 -19.6 -4.52143 | opp_overlap 284068 284072, overlap 284068 AATTGAAAGAATAAA GGGGCAGATAGT CTA ACTATCTGCCCC TTTATTATGTTTGAA TERM 275 284098 - 284072 - T 100 -19.6 -4.59489 | opp_overlap 284072 284068, overlap 284068 AATTGAAAGAATAAA GGGGCAGATAGT CTA ACTATCTGCCCC TTTATTATGTTTGAA ispB 285099 - 284128 - | octaprenyl diphosphate synthase rplU 285376 - 285687 + | 50S ribosomal protein L21 rpmA 285705 - 285962 + | 50S ribosomal protein L27 TERM 276 286005 - 285986 - f 86 -10.6 -3.67864 | opp_overlap 285986 TAAGTTAATTCTAAA GCCCTGCC AATT GGCGGGGC TTTTTATTTATGGAT TERM 277 285986 - 286005 + F 100 -12.8 -5.38958 | opp_overlap 285986 TAAGTTAATTCTAAA GCCCTGCC AATT GGCGGGGC TTTTTATTTATGGAT TERM 278 286369 - 286386 + G 71 -4.2 -4.84359 | opp_overlap 286369 CCTTAACACACTAAT CGATTA CCGTTT TAATCG TTTTTATAACGCTGA obgE 286199 - 287371 + | GTPase ObgE TERM 279 287401 - 287434 + F 81 -9.2 -3.71527 | gap 1, opp_overlap 287411, overlap 287411 ATTACAGATAATCAT TATAAAAAAACCGCA CTTGT TGCGGTTTTTTT-TA TTTAAATCATTAAAC TERM 280 287425 - 287411 - f 93 -7.1 -5.67967 | opp_overlap 287401 287411 ATCATTATAAAAAAA CCGCA CTTGT TGCGG TTTTTTTTATTTAAA TERM 281 287411 - 287425 + F 100 -7.1 -6.23545 | opp_overlap 287411, overlap 287401 ATCATTATAAAAAAA CCGCA CTTGT TGCGG TTTTTTTTATTTAAA yjjP 287505 - 288275 + | inner membrane protein VF_0283 288268 - 288759 + | hypothetical protein folA 288794 - 289261 + | dihydrofolate reductase apaH 290331 - 289516 - | diadenosine tetraphosphatase TERM 282 289669 - 289659 - G 75 -5.4 -4.81083 | CCCAATGACCAAAAA TCAC TTT GTGA GAAAGGGGAAGACGA TERM 283 290382 - 290365 - R 100 -11.3 -5.59879 | opp_overlap 290365 GATAAATATAAAAAA GGTGACC ATAA GGTCACC TCAATTGAAATCAGT TERM 284 290365 - 290382 + r 82 -11.3 -2.53995 | opp_overlap 290365 GATAAATATAAAAAA GGTGACC ATAA GGTCACC TCAATTGAAATCAGT ksgA 291222 - 290404 - | dimethyladenosine transferase pdxA 292223 - 291219 - | 4-hydroxythreonine-4-phosphate dehydrogenase surA 293514 - 292201 - | peptidyl-prolyl cis-trans isomerase (PPIase) imp 295942 - 293582 - | organic solvent tolerance protein TERM 285 294163 - 294187 + g 77 -10.1 -3.34398 | overlap 294162 CATCATTATTTTGCT CTGTACCTGAA CCA TTCAAGTACAG TATTTGACCAAAAGA djlA 296149 - 297000 + | Dna-J like membrane chaperone protein TERM 286 297043 - 297015 - T 71 -9 -3.00418 | overlap 297014 297018 GAGTCATCAAAGAAG TTATATGGGCAT GTATT ATGCCCATAGAA AGTACACTTATTTGA TERM 287 297040 - 297018 - T 81 -10.7 -2.72559 | overlap 297015 297014 TCATCAAAGAAGTTA TATGGGCAT GTATT ATGCCCATA GAAAGTACACTTATT VF_0291 297846 - 297067 - | hypothetical protein TERM 288 297939 - 297914 - R 100 -11.3 -5.4251 | TTTATAGACAAAAAA GAGGTTGATAC GTTC ATATCAACCTC TAACATTTCCTGAAT leuD 298571 - 297969 - | isopropylmalate isomerase small subunit leuC 299999 - 298584 - | isopropylmalate isomerase large subunit TERM 289 298659 - 298620 - G 82 -8.4 -4.29106 | overlap 298624 GCGGATATCAACAAA GTGACCTGCAATTGCAGC AGCG GCAGCCATCGCAGGGCTC ACTAGGTGAGTTCGA TERM 290 298655 - 298624 - G 77 -10.8 -2.77685 | overlap 298620 ATATCAACAAAGTGA CCTGCAATTGCAGC AGCG GCAGCCATCGCAGG GCTCACTAGGTGAGT TERM 291 299767 - 299788 + g 76 -7.3 -4.19177 | overlap 299772 ATTCGAGCCATTTCA CCAGAGGCA TTAA TGTCTTTGG TTTGTGTTGAAACGT leuB 301106 - 300015 - | 3-isopropylmalate dehydrogenase TERM 292 300512 - 300537 + g 72 -3.3 -5.10461 | TAGAGCTTTGTAGAA CGTTAGCTTTA TCAA TAGAGTAAACG TTTTTATTACGTAGA TERM 293 301143 - 301170 + r 75 -7 -4.2687 | opp_overlap 301146, overlap 301146 ATAATTTGGCAAATT AAAGCGGAGAAA GGTT TATCTCCGCTTA TTTATAATTTTTAGG TERM 294 301167 - 301146 - R 82 -8.7 -4.06055 | opp_overlap 301143 301146 ATTTGGCAAATTAAA GCGGAGAAA GGTT TATCTCCGC TTATTTATAATTTTT TERM 295 301146 - 301167 + r 85 -8.7 -4.22276 | opp_overlap 301146, overlap 301143 ATTTGGCAAATTAAA GCGGAGAAA GGTT TATCTCCGC TTATTTATAATTTTT leuA 302735 - 301188 - | 2-isopropylmalate synthase TERM 296 302808 - 302791 - R 100 -9.1 -5.65177 | opp_overlap 302791 ATATCCATAAAAAAA CCCGCCA TGGT TAGCGGG TTTTAAAATTTGGTT TERM 297 302791 - 302808 + r 75 -6.9 -4.25676 | opp_overlap 302791 ATATCCATAAAAAAA CCCGCCA TGGT TAGCGGG TTTTAAAATTTGGTT leuL 302909 - 302847 - | leu operon leader peptide TERM 298 303062 - 303074 + H 77 -4.7 -5.10004 | TTGGTGTTTATTTGT GCGTG TTG CTCGC TTTTTGATTCTTTTT VF_0296 303219 - 303863 + | TetR family transcriptional regulator VF_0297 303850 - 305169 + | acriflavin resistance periplasmic protein TERM 299 305994 - 305964 - g 72 -3.3 -5.1356 | gap 1, opp_overlap 305967 CTTGATGAACAAAAA GTACTGTTTGATGG TAAG CCATCAG-CGGTAC TTAAGATCAGTAAAA TERM 300 306231 - 306250 + G 72 -3.4 -5.09225 | TATTCTTTCTGGGTT GCTGCTGG TTTG CCCGTGGC TTTTTTAGGTGGACT VF_0298 305166 - 308270 + | acriflavin resistance plasma membrane protein VF_0300 309283 - 308282 - | putative salt-induced outer membrane protein TERM 301 309003 - 309037 + g 76 -6.6 -4.44915 | AGTTGACTAATGACA GGGTTAATACTTGG TTTTTTC TCAAGTGTTAACTC TTTTGTCCCTGCTTC TERM 302 310835 - 310847 + G 79 -9.1 -3.79747 | opp_overlap 310835 310832 TCGTTTTGATAATTA CGCAG GCC CTGCG TTTGATGATGAATAA dnaB 309465 - 310862 + | replicative DNA helicase alr 310875 - 311957 + | alanine racemase TERM 303 312008 - 311991 - g 71 -7 -4.07885 | opp_overlap 311991 CATTTTCTTTTAAAA GCGCTA CTGGTC TAGCGC TTTTTCTTATTTCCC TERM 304 311991 - 312008 + G 93 -7 -5.38549 | opp_overlap 311991 CATTTTCTTTTAAAA GCGCTA CTGGTC TAGCGC TTTTTCTTATTTCCC TERM 305 312620 - 312604 - g 73 -8.1 -3.80625 | overlap 312598 TTGGGATAATCGAAA TAGTGTT CGA AACACTA CGCATGGTTCTCGCA VF_0303 311957 - 313174 + | hypothetical protein TERM 306 313666 - 313654 - g 70 -2.7 -5.02074 | opp_overlap 313663, overlap 313663 TCAGTGGTGAAAAAA TCAAT AAA ACTGA AGGTCGTTCAGTGCT TERM 307 313677 - 313663 - g 74 -4.3 -4.95211 | opp_overlap 313663, overlap 313654 AAAAAATCAATAAAA CTGAA GGTCG TTCAG TGCTTCATACTGCAC TERM 308 313782 - 313771 - g 75 -3 -5.32882 | CAGTATTAGAAAAAA TGAA AGGC TTCA CAGAGCGTCTAATTT TERM 309 314069 - 314031 - g 79 -11.1 -3.23452 | opp_overlap 314030 314034 314035 314038 314041, overlap 314035 ACGTTCACAACTCAA GAAACAATGACGAACGC ACACA GCGCTCGTGATTGGTTC CTTGCTGAAGCTGGT TERM 310 314065 - 314035 - g 89 -10.5 -4.27467 | opp_overlap 314034 314030 314035 314038 314041, overlap 314031 TCACAACTCAAGAAA CAATGACGAACGC ACACA GCGCTCGTGATTG GTTCCTTGCTGAAGC pgi 313389 - 315041 + | glucose-6-phosphate isomerase TERM 311 315073 - 315092 + T 100 -10 -5.52909 | opp_overlap 315073 TTAACTAATTAAAAA GAGCTGAC TTCG GTCGGCTC TTTTTTTAGATATTA TERM 312 315092 - 315073 - T 88 -7.8 -4.93547 | opp_overlap 315073 TTAACTAATTAAAAA GAGCTGAC TTCG GTCGGCTC TTTTTTTAGATATTA TERM 313 315143 - 315122 - T 93 -8.1 -5.49234 | opp_overlap 315122 ACAGGCAATAAAAAA GGTTGATAC CTAA ATATCAACC TCTATCGTTCTAGTC cheX 315659 - 315198 - | chemotaxis CheY-phosphatase CheX zur 316136 - 315687 - | DNA-binding transcriptional repressor, Zn(II)-binding TERM 314 316180 - 316191 + H 74 -3 -5.26918 | opp_overlap 316180, overlap 316170 TTGAGGAGTTTAACA TAAC TCTC GTTA TTTTTTATCCACTAT VF_0307 316316 - 317302 + | tRNA-dihydrouridine synthase A VF_0308 317421 - 318122 + | hypothetical protein TERM 315 318164 - 318189 + F 100 -12.7 -6.09196 | opp_overlap 318166 GAATTATTTTTAAGG TAGCGATTCAG GTGA CTGAGTCGCTA TTTTTTTATTTTAAA VF_0309 318294 - 318524 + | hypothetical protein TERM 316 319424 - 319414 - g 72 -3.2 -5.12617 | TAACTAGCCAAAAAA TCAC AGG GCGA GATTCAGGTAAAGAT cysJ 318660 - 320474 + | sulfite reductase, alpha subunit, flavoprotein cysI 320474 - 322204 + | sulfite reductase subunit beta cysH 322197 - 322958 + | phosphoadenosine phosphosulfate reductase TERM 317 323016 - 322999 - T 100 -12.7 -4.28361 | opp_overlap 322999 TTAATTGGATTAAAA GGCAGCG ATAA CGCTGCC TTTATTTATCTTGAT TERM 318 322999 - 323016 + T 100 -12.7 -4.69415 | opp_overlap 322999 TTAATTGGATTAAAA GGCAGCG ATAA CGCTGCC TTTATTTATCTTGAT VF_0313 323510 - 323046 - | hypothetical protein TERM 319 323484 - 323500 + g 85 -3.7 -5.68023 | GAGTGAAAGTGCAAG CGTTGAT AAG ATTAGCG TTTTTTTCATTGTCA TERM 320 323579 - 323598 + r 88 -7.8 -5.15526 | opp_overlap 323579 ATGACACAAAAAAAA GCGATACC CATA GGCATCGC TTTTTAATTTTATAT TERM 321 323598 - 323579 - R 100 -10 -6.0427 | opp_overlap 323579 ATGACACAAAAAAAA GCGATACC CATA GGCATCGC TTTTTAATTTTATAT fklB 324254 - 323634 - | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) TERM 322 324010 - 324020 + g 73 -6.8 -4.1585 | overlap 324019 324019 AAAGCTTCGCCTTCA GCTG CAG CAGC TTTTGAAGCTTCTGC TERM 323 324781 - 324770 - g 74 -4.4 -4.89063 | overlap 324773 324774 CTATTGAAAAAGAAA CAAC GGCT GTTG AAGCCAAATGGCACG VF_0315 324394 - 325044 + | opacity associated protein OapA VF_0316 325923 - 325081 - | drug/metabolite exporter family protein elaA 326377 - 325925 - | acyltransferase VF_0318 327013 - 326444 - | Crp family transcriptional regulator TERM 324 327082 - 327105 + r 100 -14 -4.77173 | opp_overlap 327082 ATACAGATAAAAAAA TAGCATGGTG AAAT CACCATGCTA TTTGTTTTGTAAAAG TERM 325 327105 - 327082 - R 100 -14 -5.77988 | opp_overlap 327082 ATACAGATAAAAAAA TAGCATGGTG AAAT CACCATGCTA TTTGTTTTGTAAAAG cpdB 329112 - 327130 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 326 329388 - 329371 - H 84 -5.7 -5.52096 | AAATCGAATAAAAAA TGAAATT TTAG AATTTCA GGTAATAAAGTAACC cysD 329521 - 330429 + | sulfate adenylyltransferase subunit 2 cysN 330459 - 331895 + | sulfate adenylyltransferase subunit 1 TERM 327 331996 - 332008 + G 80 -7.7 -4.48176 | ACCAAGCGTCATATT TGCAG GCT CTGCA TTTATTGCTTTTATG TERM 328 333431 - 333447 + G 72 -4.3 -4.77567 | ATGGCATTGGGGTAT GGCGTTG ATC CCATGCC TTTTATTATGGCGGT yfbS 331907 - 333634 + | divalent anion:sodium symporter family protein cysC 333649 - 334263 + | adenylylsulfate kinase VF_0324 335282 - 334347 - | hypothetical protein TERM 329 335538 - 335490 - R 86 -10.8 -3.18264 | gap 1, opp_overlap 335484 GTGTTTATGCAGTAA CACTGGTTTAT-TTATCTAATTA TATT TAACTAAACAAAATAAACCAGTG TAAAATATTTGTTAA VF_0325 336039 - 335554 - | hypothetical protein VF_0326 337310 - 336051 - | permease VF_0327 337993 - 337307 - | ABC transporter ATP-binding protein TERM 330 338022 - 338001 - R 74 -6.5 -4.3467 | overlap 338002 ATGTTCATAGTAAAA CTGGCGATG TTAC CACCGCCAT ACCTAAGTTATAGAG TERM 331 338021 - 338002 - R 79 -10 -3.2032 | overlap 338001 TGTTCATAGTAAAAC TGGCGATG TTAC CACCGCCA TACCTAAGTTATAGA VF_0328 338674 - 338030 - | hypothetical protein TERM 332 338256 - 338288 + g 82 -10.7 -3.52652 | overlap 338257 338259 TGGTGGTCATGGTCA TGGTCATGGTCATGG TCA TCATGATCATGATCG TTATGATTAACTAGG TERM 333 338257 - 338287 + g 81 -12 -2.7127 | overlap 338256 338259 GGTGGTCATGGTCAT GGTCATGGTCATGG TCA TCATGATCATGATC GTTATGATTAACTAG TERM 334 338259 - 338285 + g 77 -11 -2.89714 | overlap 338257 338256 TGGTCATGGTCATGG TCATGGTCATGG TCA TCATGATCATGA TCGTTATGATTAACT VF_2585 338765 - 338875 + | hypothetical protein VF_2586 338868 - 338933 + | hypothetical protein ytfJ 339631 - 339080 - | transcriptional regulator TERM 335 339887 - 339901 + G 71 -7.2 -3.9281 | CCATTGCAAGTCGCT CGTTTT GTA AAAACG TTATTTAAGGGTAAT VF_0330 339845 - 340054 + | hypothetical protein TERM 336 340078 - 340099 + T 100 -10.9 -5.76237 | opp_overlap 340076 340078 TAATAGTTAATAAGA GGTGCTCGT GGTC ATGAGCACC TTTTTTGTTTATATA TERM 337 340099 - 340078 - T 75 -8.7 -3.44517 | opp_overlap 340078, overlap 340076 TAATAGTTAATAAGA GGTGCTCGT GGTC ATGAGCACC TTTTTTGTTTATATA msrA 340686 - 340108 - | peptide-methionine (S)-S-oxide reductase TERM 338 341051 - 341029 - g 83 -12.2 -3.21099 | overlap 341033 341036 CTTGGTTATTACCAA TCAACAACAA CCT TTGTTGTTGA AGGGGATACATCTGA TERM 339 341050 - 341033 - g 70 -8.5 -3.41693 | overlap 341029 341036 GTTATTACCAATCAA CAACAAC CTTT GTTGTTG AAGGGGATACATCTG ytfM 340801 - 342522 + | outer membrane protein and surface antigen TERM 340 342586 - 342573 - g 82 -3.8 -5.46657 | opp_overlap 342573 342574, overlap 342574 GAGTTGAAGAAAAAA CGAC GTTTTA GTCG TCATTGTCTTTGTTT TERM 341 343195 - 343185 - g 79 -3.2 -5.42862 | ACATCGTCAAAAAAA GATG ATG CACC TATCGTTTTACCTGA ytfN 342519 - 346319 + | hypothetical protein TERM 342 346567 - 346557 - T 82 -5.4 -5.22943 | ATTAAATTTAAAAAA GTGT TTG ACAC GAAAGTTTAATTAGC TERM 343 348355 - 348336 - T 72 -9.2 -2.65808 | opp_overlap 348342, overlap 348333 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 344 348745 - 348726 - T 73 -8.6 -3.23708 | overlap 348729 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGTTTA TERM 345 349273 - 349261 - T 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 346 350066 - 350050 - T 85 -9.4 -4.08546 | overlap 350062 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 347 351903 - 351932 + T 100 -13.7 -3.64822 | opp_overlap 351908, overlap 351908 AGGCTTGAATTTGAA TGAGAGCCCGTTC AGTT GAACGGGCTTTTA TTTCGCTCCCAGACT TERM 348 351927 - 351908 - T 89 -13.6 -2.92246 | opp_overlap 351903 351908 TGAATTTGAATGAGA GCCCGTTC AGTT GAACGGGC TTTTATTTCGCTCCC TERM 349 351908 - 351927 + T 100 -13.6 -4.90778 | opp_overlap 351908, overlap 351903 TGAATTTGAATGAGA GCCCGTTC AGTT GAACGGGC TTTTATTTCGCTCCC TERM 350 352057 - 352031 - T 90 -11.6 -3.57263 | ATCTTGACTTTCAAA TCAGACAGCGTA TTA TACGCAGCCTGA AACAACGAAGCGGAA TERM 351 353827 - 353808 - T 72 -9.2 -2.65808 | opp_overlap 353814, overlap 353805 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 352 353907 - 353895 - T 77 -4.9 -5.0538 | opp_overlap 353893 353895 GGTTAGGTTAAAAAA TTAAG AGA CTTAA TGTTGGGTCTGTAGC TERM 353 354331 - 354312 - T 73 -8.6 -3.23708 | overlap 354315 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGTTTA TERM 354 354859 - 354847 - T 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 355 355652 - 355636 - T 85 -9.4 -4.08546 | overlap 355648 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 356 357615 - 357594 - T 100 -13.1 -5.53991 | opp_overlap 357594 CACTTATTAAAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTTGCATCTGTA TERM 357 357594 - 357615 + T 100 -13.1 -5.14477 | opp_overlap 357594 CACTTATTAAAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTTGCATCTGTA TERM 358 357771 - 357792 + T 100 -13.1 -5.24449 | opp_overlap 357771 CCACTTATTTAAGAA GCCCTAATC GAAA GATTAGGGC TTTTTTACATTTGTA TERM 359 357792 - 357771 - T 95 -13.1 -3.68569 | opp_overlap 357771 CCACTTATTTAAGAA GCCCTAATC GAAA GATTAGGGC TTTTTTACATTTGTA TERM 360 358263 - 358280 + T 75 -8.4 -3.80094 | opp_overlap 358263, overlap 358254 TTTGAGCTAAAAAAA GAGGCG AACAAG CGCCTC TTCTATTAATTTCAA TERM 361 358280 - 358263 - T 93 -8.4 -5.47218 | opp_overlap 358254 358263 TTTGAGCTAAAAAAA GAGGCG AACAAG CGCCTC TTCTATTAATTTCAA yjcE 359576 - 358299 - | cation/proton antiporter TERM 362 359639 - 359654 + H 80 -4.8 -5.24291 | TCATTTTCCGCTCTA TTTGAT AAAT ATCAAA TTTTATTTTCATTTT metH 359759 - 363439 + | B12-dependent methionine synthase TERM 363 363467 - 363488 + T 100 -11.7 -5.07275 | opp_overlap 363467 CTTTTAAACTAAAAA TGCCCATTA AATG TAATGGGCA TTTTTGTATGTATCA TERM 364 363488 - 363467 - T 100 -11.7 -4.98531 | opp_overlap 363467 CTTTTAAACTAAAAA TGCCCATTA AATG TAATGGGCA TTTTTGTATGTATCA lysC 364857 - 363505 - | aspartate kinase III VF_0339 365309 - 366421 + | serine--pyruvate aminotransferase TERM 365 366456 - 366435 - T 88 -7.3 -5.00923 | opp_overlap 366435 AAATATTAAATAAAA CAGCCAC TAAATCCC GTGGCTG TTTATGCTAATAGTT TERM 366 366435 - 366456 + T 73 -7.3 -4.0044 | opp_overlap 366435 AAATATTAAATAAAA CAGCCAC TAAATCCC GTGGCTG TTTATGCTAATAGTT VF_0340 368233 - 366473 - | putative Lipid A core -- O-antigen ligase Wzy-like protein TERM 367 367278 - 367288 + g 72 -4.6 -4.83169 | opp_overlap 367278 TTACCATAACCATAA CCTG TGA CGGG TTTTTCTAAAAACAT TERM 368 368252 - 368287 + r 77 -9.2 -3.254 | opp_overlap 368257 368261, overlap 368257 368260 368261 CCAACTATTTCCTTA TATAATAAAGCCAACA AAAA TGTTGGCCTTATTCTA TCTTATCCATAGATG TERM 369 368257 - 368282 + r 81 -9.1 -3.7319 | opp_overlap 368257 368261, overlap 368252 368260 368261 TATTTCCTTATATAA TAAAGCCAACA AAAA TGTTGGCCTTA TTCTATCTTATCCAT TERM 370 368282 - 368257 - R 89 -11.3 -3.48593 | opp_overlap 368252 368257 368260 368261, overlap 368261 TATTTCCTTATATAA TAAAGCCAACA AAAA TGTTGGCCTTA TTCTATCTTATCCAT TERM 371 368261 - 368278 + r 77 -9.9 -2.98105 | opp_overlap 368261 368257, overlap 368260 368257 368252 TCCTTATATAATAAA GCCAACA AAAA TGTTGGC CTTATTCTATCTTAT TERM 372 368278 - 368261 - R 100 -9.9 -4.38927 | opp_overlap 368260 368257 368252 368261, overlap 368257 TCCTTATATAATAAA GCCAACA AAAA TGTTGGC CTTATTCTATCTTAT uvrA 371155 - 368330 - | excinuclease ABC subunit A TERM 373 370283 - 370273 - G 71 -6.8 -4.09685 | GCTTATCGTCTAAAA CGAC TCT GTCG GCATCAAAATATTGT TERM 374 371276 - 371305 + r 93 -9.3 -4.34285 | opp_overlap 371279, overlap 371274 371279 TAGAGAGGTAAAACA AAACGCCCCATGT CTAA ACATAGGGCGTTA TTATTTATTTAAGTG TERM 375 371279 - 371302 + r 100 -11 -4.26693 | opp_overlap 371279, overlap 371276 371274 AGAGGTAAAACAAAA CGCCCCATGT CTAA ACATAGGGCG TTATTATTTATTTAA TERM 376 371302 - 371279 - R 100 -13.2 -5.11836 | opp_overlap 371279 371276 371274 AGAGGTAAAACAAAA CGCCCCATGT CTAA ACATAGGGCG TTATTATTTATTTAA galU 372196 - 371327 - | glucose-1-phosphate uridylyltransferase TERM 377 371932 - 371950 + g 74 -6 -4.38748 | AATCAATCAGTTCGC GAACATCT TCA AGAAGTTC TTCTTTGTTTGTACC VF_0343 372781 - 372377 - | hypothetical protein VF_0344 373901 - 372768 - | glycosyltransferase VF_0345 375111 - 373906 - | lipopolysaccharide N-acetylglucosaminyltransferase TERM 378 374409 - 374430 + g 75 -5.9 -4.70169 | opp_overlap 374384 374382 374411 GACTTAAACGCCCAA GATAAAGGT AGTA ACCATTATC TTTTATTCCCTCTAA TERM 379 374708 - 374723 + g 74 -6.2 -4.371 | opp_overlap 374672 TTACGGTACATGGTG TAGCTT GGAC AAGCTA TTTTAGTATCGTGGG VF_0346 376106 - 375108 - | hypothetical protein TERM 380 375998 - 376017 + g 100 -6.4 -5.88471 | opp_overlap 375982 CAGCAACAATAATTT TATGAGGG TATA CCCCCATA TTTTTTTTGATGCTG VF_0347 377478 - 376099 - | hypothetical protein TERM 381 376200 - 376177 - G 74 -3.8 -5.12785 | opp_overlap 376177, overlap 376197 TAAGTAAAAAAGAAA TTGAAGCATG GGAA CAAGCATCAA TATTTGACTATATGG VF_0348 378686 - 377481 - | sensor protein UhpB TERM 382 377937 - 377927 - G 74 -4 -5.03715 | overlap 377913 ACCACTTTGAAAAAA TAGA GTT TCTA ACAGCATTACCAACA VF_0349 380871 - 378691 - | chain length regulator, exopolysaccharide biosynthesis protein TERM 383 380378 - 380358 - G 83 -12.7 -2.72049 | overlap 380347 380360 TATAGCTTTCAACGA CAGCATTAG CAA CTAATGCTG ACATATCGGAGTCTT TERM 384 380376 - 380360 - G 71 -9.5 -2.90392 | overlap 380347 380358 TAGCTTTCAACGACA GCATTAG CAA CTAATGC TGACATATCGGAGTC VF_0350 381462 - 380875 - | periplasmic protein involved in polysaccharide export VF_0351 382779 - 381463 - | TetR family transcriptional regulator TERM 385 382734 - 382709 - G 88 -10.6 -4.06611 | opp_overlap 382707 TAAGCATAACAAGAA CTGCTTACTA ATGAAG TAGTAAGCAG TATAAGTTTGTTGAA wcaJ 384175 - 382763 - | UDP-glucose lipid carrier transferase VF_2587 384215 - 384343 + | hypothetical protein TERM 386 384447 - 384467 + F 70 -8.3 -3.24747 | opp_overlap 384446, overlap 384446 ACTGTATATATAACC GGGTGAAAA CCG TTTTCCCCC TTAATAATCTGGAGC ssb 384488 - 385021 + | single-strand DNA-binding protein TERM 387 385076 - 385058 - T 100 -13.2 -5.80951 | opp_overlap 385058 ATTTAAAATAAAAAA GCCTCGAT AAT ATCGAGGC TTTTTTCTATCTGTT TERM 388 385058 - 385076 + T 100 -13.2 -5.46276 | opp_overlap 385058 ATTTAAAATAAAAAA GCCTCGAT AAT ATCGAGGC TTTTTTCTATCTGTT VF_0354 385762 - 385106 - | hypothetical protein TERM 389 385721 - 385711 - G 71 -6.8 -4.07535 | opp_overlap 385711 AATGCTCAGAAATAA TGGC AAA GCCA TTTGCGATAACAAGG csrD 386002 - 387981 + | regulatory protein CsrD TERM 390 389516 - 389500 - g 78 -3.7 -5.29846 | AACTTGAAATAAAAA CAGAC GATAAAG GTCTG GTGTCATTTATTTTA mshI 388101 - 389564 + | MSHA biogenesis protein MshI mshJ 389557 - 390195 + | MSHA biogenesis protein MshJ VF_0358 390197 - 390538 + | hypothetical protein TERM 391 390609 - 390623 + G 75 -10 -3.09492 | AACAGGTTGCTCAAT GGGTCA TCG TGACCC TGTTGAAATTAAACA mshL 390550 - 392190 + | MSHA biogenesis protein MshL TERM 392 392278 - 392296 + G 91 -13.2 -3.19003 | overlap 392269 CTGTTTCATGGCTTA TCGCCTCA TTA TGAGGCGA TTCATACCGTGTTGT mshM 392203 - 393051 + | MSHA biogenesis protein MshM mshN 393036 - 394181 + | MSHA biogenesis protein MshN mshE 394181 - 395905 + | MSHA biogenesis protein MshE mshG 395915 - 397141 + | MSHA biogenesis protein MshG VF_0364 397144 - 397599 + | hypothetical protein TERM 393 398048 - 398000 - g 72 -9 -3.29273 | overlap 397998 TGCACCACGAGAAGA TTTAGATGGTAATGATACGGGG AGCTA CCCAGCATCACTAACATCAAAA GAGTGTATTTTACTG mshB 397686 - 398249 + | MSHA pilin protein MshB TERM 394 398631 - 398614 - g 74 -6.3 -4.44046 | opp_overlap 398614 398620 TTGATGGTAAAGAAA CAGCTTC AACA GAAACTG ATGTTGATGGTATTG mshA 398415 - 398879 + | MSHA pilin protein MshA TERM 395 398922 - 398906 - f 100 -10.1 -4.65895 | opp_overlap 398906 CTCTTTAGTTAAAAA CCAGCGA TCT CCGCTGG TTTTTTTGTATCTAA TERM 396 398906 - 398922 + F 100 -9.4 -5.76633 | opp_overlap 398906 CTCTTTAGTTAAAAA CCAGCG ATCTC CGCTGG TTTTTTTGTATCTAA mshC 399006 - 399602 + | MSHA pilin protein MshC mshD 399599 - 400180 + | MshD protein mshO 400180 - 400905 + | MSHA pilus assembly protein MshO mshP 400937 - 401329 + | MSHA biogenesis protein MshP TERM 397 403376 - 403404 + G 100 -14.1 -3.93782 | opp_overlap 403384 TAAGTTTTGATGTGT TCCAGAATGATTA TTT TAATCGTTCTGGA TTTAATATTCCGTCA TERM 398 403772 - 403759 - g 76 -2.3 -5.40474 | opp_overlap 403759 ACTTGGTCAAAAAAA GAGGG GGCA CCTTC ATTTGGAAATCGTAC mshQ 401329 - 404436 + | MshQ protein TERM 399 404468 - 404451 - f 82 -5.6 -5.30199 | opp_overlap 404451 404458 AAAAATGAATAAAAA TCCTGA TTTGCT TCAGGA TTCTGTAGCAATACC TERM 400 404472 - 404510 + F 83 -9.6 -3.78351 | opp_overlap 404480 404482, overlap 404458 TTTGCTTCAGGATTC TGTAGCAATACCTTGCTG ATT CGGCTAGGCATTGGTACA TTTAATAAAATTTAT TERM 401 405501 - 405490 - g 70 -5.8 -4.46073 | TTCTAACAGAAGAAA CTGG TATT CCAG TAGTGGTTGCTGAAG mreB 404559 - 405602 + | cell wall structural complex MreBCD, actin-like component MreB mreC 405626 - 406477 + | cell wall structural complex MreBCD transmembrane component MreC mreD 406467 - 406958 + | rod shape-determining protein MreD TERM 402 407190 - 407218 + G 88 -11.1 -4.07568 | overlap 407193 CCCAGTCTTGGGCTC TGACACCATCGTT GTT ATCGATGGTGTTA TTTTAGAAAAACCAA TERM 403 407193 - 407215 + G 90 -10.6 -4.17048 | overlap 407190 AGTCTTGGGCTCTGA CACCATCGTT GTT ATCGATGGTG TTATTTTAGAAAAAC yhdE 406969 - 407544 + | Maf-like protein rng 407563 - 409032 + | ribonuclease G TERM 404 409090 - 409115 + G 87 -12.7 -3.27298 | GCTTGATGGGATTAT TGCTGCTGGTA TTTT TACTAGCAGCA TTAGTCATTACCAGC TERM 405 409775 - 409754 - g 74 -5.2 -4.74103 | overlap 409756 409761 TGTTGAAGCGAAAAA CATCCAAG TGACCC CTTGGATA ACTGAGTCTATACAA yhdP 409080 - 412913 + | membrane protein, transporter TERM 406 413715 - 413703 - g 79 -3.3 -5.4477 | opp_overlap 413707 AAATCCGCAAAAAAA TGCCC GTA GCGCA ACACGCTCGTTTAAT VF_0378 412928 - 413746 + | beta-ureidopropionase TERM 407 413789 - 413752 - f 73 -8.7 -3.26031 | opp_overlap 413757, overlap 413757 TCTACCTTAAATACA GAAAAGAGTGAGTTT AGCCTATA AAACTCACTCTTTTT TCTTCATAATTAAAC TERM 408 413784 - 413757 - f 93 -8.6 -4.74013 | opp_overlap 413757, overlap 413752 CTTAAATACAGAAAA GAGTGAGTTT AGCCTATA AAACTCACTC TTTTTTCTTCATAAT TERM 409 413757 - 413784 + F 95 -8.6 -5.52023 | opp_overlap 413757 413752 CTTAAATACAGAAAA GAGTGAGTTT AGCCTATA AAACTCACTC TTTTTTCTTCATAAT tldD 413840 - 415285 + | peptidase TERM 410 415346 - 415318 - T 93 -6 -5.9003 | opp_overlap 415320, overlap 415320 AAATGAATAAAAAAA GAGCCAAGGATC ATTAA GATGCTTGGCTT TTTTATTAACAAAAA TERM 411 415344 - 415320 - T 89 -8.6 -4.55661 | opp_overlap 415320, overlap 415318 ATGAATAAAAAAAGA GCCAAGGATC ATTAA GATGCTTGGC TTTTTTATTAACAAA TERM 412 415320 - 415344 + T 95 -8.6 -5.4505 | opp_overlap 415318 415320 ATGAATAAAAAAAGA GCCAAGGATC ATTAA GATGCTTGGC TTTTTTATTAACAAA yjgA 415917 - 415378 - | hypothetical protein TERM 413 415626 - 415656 + g 70 -8.4 -3.35867 | overlap 415628 GCTTGTTGCGAATTT TATCTAGAGCTAAT TGG ATTGGCTCTGGATC TTCATTACGCATTAG TERM 414 415628 - 415654 + g 79 -11 -3.24597 | overlap 415626 TTGTTGCGAATTTTA TCTAGAGCTAAT TGG ATTGGCTCTGGA TCTTCATTACGCATT pmbA 416027 - 417370 + | peptidase PmbA TERM 415 417464 - 417410 - T 84 -11.9 -2.72829 | gap 2, opp_overlap 417423, overlap 417423 TAGATTGGTGTAAAG CATAA-ATAAAAAA-GCGCGCAATCAT TAA ATGAGAGCGCGCTTTTTTTATGTTATG TAAAAATAAAAATTA TERM 416 417423 - 417449 + T 100 -10.8 -5.84432 | opp_overlap 417410 417423 AGCATAAATAAAAAA GCGCGCAATCAT TAA ATGAGAGCGCGC TTTTTTTATGTTATG TERM 417 417449 - 417423 - T 100 -10.8 -5.73978 | opp_overlap 417423, overlap 417410 AGCATAAATAAAAAA GCGCGCAATCAT TAA ATGAGAGCGCGC TTTTTTTATGTTATG VF_0382 418832 - 417477 - | magnesium transporter VF_0383 419261 - 418983 - | phosphocarrier protein HPr yhbJ 420134 - 419280 - | hypothetical protein ptsN 420601 - 420158 - | sugar-specific enzyme IIA component of PTS TERM 418 420247 - 420258 + g 72 -4.4 -4.66163 | opp_overlap 420247 420249 TGAGTTTTTCAGCAA CACT AGAA AGTG TTTTTAGATGAAGCT hpf 420890 - 420603 - | ribosome-associated, sigma 54 modulation protein rpoN 422379 - 420910 - | RNA polymerase factor sigma-54 TERM 419 422157 - 422168 + g 70 -3.6 -5.00267 | TTGGTGTTTCTTGCT CTGC TGAT GCGG TTTCTTTTTCTGATT TERM 420 422225 - 422248 + g 70 -8.2 -3.64822 | GGTGTGCTTAATGCT TCCTCTTCTA CATC TAGAAGTGGA TTTGAGTCGAGCGCT TERM 421 422450 - 422426 - R 91 -12.3 -3.23984 | opp_overlap 422425 422426 422432, overlap 422432 TAAATTGATCACCAA GATAAACACGT TTT ACGTGTTCATC ATTTAATACGTGTTC TERM 422 422426 - 422450 + r 76 -10.1 -2.87206 | opp_overlap 422426 422432, overlap 422425 422432 TAAATTGATCACCAA GATAAACACGT TTT ACGTGTTCATC ATTTAATACGTGTTC lptB 423128 - 422403 - | ABC transporter ATP-binding protein TERM 423 422444 - 422432 - G 77 -7.7 -4.24745 | opp_overlap 422426 422425 422432, overlap 422426 GATCACCAAGATAAA CACGT TTT ACGTG TTCATCATTTAATAC lptA 423628 - 423131 - | ABC transporter periplasmic-binding protein VF_0390 424172 - 423609 - | hypothetical protein kdsC 424729 - 424169 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase kdsD 425703 - 424729 - | D-arabinose 5-phosphate isomerase yrbG 426860 - 425889 - | calcium/sodium:proton antiporter TERM 424 427251 - 427231 - g 74 -9.1 -3.53761 | opp_overlap 427231 TAATTGGTGGGCAAA TACTTCCTG AAT CAGGAAATA TCCATTTTGAAGAGT yrbF 427047 - 427868 + | toluene ABC transporter ATP-binding protein yrbE 427861 - 428655 + | toluene ABC transporter membrane protein yrbD 428659 - 429153 + | organic solvent ABC transporter yrbC 429153 - 429794 + | organic solvent ABC transporter yrbB 429794 - 430114 + | NTP-binding protein TERM 425 430276 - 430256 - g 71 -3.9 -4.84182 | TGAAAAAACAACAAA CCATCTATG GAC CTTTGATGG AGCATATCTCAACGA yrbA 430114 - 430371 + | DNA-binding transcriptional regulator TERM 426 430888 - 430866 - g 75 -7.8 -3.97636 | opp_overlap 430864 430866 ATCGTAATGGACAAA GTAAGTGTTG GTG CAACAATTAC TGTTATGTGTGCAGC murA 430383 - 431651 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 427 431696 - 431715 + F 100 -9.3 -5.5604 | GTATTAAAGTGGAAG CCGGGTA TATTAC TACCCGG TTTTTTATTGGTTGG plsC 431766 - 432527 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 428 432518 - 432504 - f 74 -6.4 -4.38369 | GAATTAAATAAAGAA GTTGCA GAA CGCAAC CAAGCGTAATTAATC TERM 429 432553 - 432574 + F 95 -8.7 -5.75538 | opp_overlap 432535 432553 TTAAATTTTATCTAA GGCATACGG TCTT CTGTGTGCC TTTTTCTTTTTTAGA idi 432599 - 433144 + | isopentenyl-diphosphate delta-isomerase TERM 430 433166 - 433199 + T 84 -8.3 -4.61284 | opp_overlap 433171, overlap 433171 ATTCTTTTATTAGAT AAAAATAAGGCAGAA AAGA TTCTGCCTTATTTCG TTTTAATTTAGTGTT TERM 431 433171 - 433194 + T 100 -12.6 -4.29472 | opp_overlap 433171, overlap 433166 TTTATTAGATAAAAA TAAGGCAGAA AAGA TTCTGCCTTA TTTCGTTTTAATTTA TERM 432 433194 - 433171 - T 100 -12.6 -5.00895 | opp_overlap 433171 433166 TTTATTAGATAAAAA TAAGGCAGAA AAGA TTCTGCCTTA TTTCGTTTTAATTTA yjgF 433607 - 433218 - | ketoacid-binding protein TERM 433 433726 - 433704 - R 100 -11.3 -4.79657 | ATAACAGTAAGAAAA CAGCCCCGA GAATA TCGAGGCTG AGAAGAGAATCAAAT pyrI 434210 - 433746 - | aspartate carbamoyltransferase regulatory subunit pyrB 435153 - 434224 - | aspartate carbamoyltransferase catalytic subunit TERM 434 435214 - 435194 - R 100 -9 -6.02546 | opp_overlap 435194 TGAAATCAAAAAAAA GCCCCCTA ATAAA TAGGAGGC TTTAAAAATTGGGTT pyrL 435262 - 435173 - | pyr operon leader peptide argI 436403 - 435399 - | ornithine carbamoyltransferase sagP 437736 - 436516 - | arginine deiminase rraB 437890 - 438306 + | hypothetical protein TERM 435 438331 - 438359 + F 100 -12.5 -5.42259 | opp_overlap 438329 438331 ACTAAAGAACATAGA TGCCCTAGATGTG AAT CATGTCTGGGGCA TTTTTTTAAGGATGA TERM 436 438704 - 438731 + G 73 -7.8 -3.80746 | opp_overlap 438693 438703 GACATTAAAGAGTAT CTTCAAGTAGGT GGGA ACCGATTTGAAG TGTTGTTTTTACAAG VF_0410 438377 - 439219 + | hypothetical protein TERM 437 439292 - 439323 + T 100 -10.3 -4.4773 | opp_overlap 439297, overlap 439297 ACATTGATATAAATA AAAAAGGTCGATG CGTTAA CATCGACCTTTTA TTTTGCTTGCTCTAA TERM 438 439318 - 439297 - T 100 -10.9 -5.76237 | opp_overlap 439297 439292 GATATAAATAAAAAA GGTCGATGC GTTA ACATCGACC TTTTATTTTGCTTGC TERM 439 439297 - 439318 + T 100 -10.2 -5.18643 | opp_overlap 439297, overlap 439292 GATATAAATAAAAAA GGTCGATG CGTTAA CATCGACC TTTTATTTTGCTTGC valS 442213 - 439340 - | valyl-tRNA synthetase TERM 440 441892 - 441907 + g 85 -6.8 -5.13343 | TGTCGATGAAAGCAT CACGGC CGTA GTCGTG TTTTGTTTTGCCTTC TERM 441 442137 - 442150 + g 74 -3.8 -5.06816 | GAAGTGTCACCGTGT GGCT TAAAGT AGCC TTTTTCTTCCCAAGT holC 442767 - 442324 - | DNA polymerase III subunit chi TERM 442 442365 - 442379 + g 71 -7.2 -3.90729 | CTCGGCCTGCATTTC GGTATA TTT TATACC TTTCTCGAGCTTGTT TERM 443 442823 - 442806 - R 90 -8.4 -5.1675 | opp_overlap 442806 GTACGTATTAAAAAA GGGCCT CAATAT AGGCCC TTTATATCATAAAAC TERM 444 442806 - 442823 + r 81 -8.4 -4.08706 | opp_overlap 442806 GTACGTATTAAAAAA GGGCCT CAATAT AGGCCC TTTATATCATAAAAC pepA 444355 - 442847 - | leucyl aminopeptidase TERM 445 443581 - 443593 + g 77 -7.7 -4.22009 | TTGGTTTTGCAGCAG GGTCA GGG TGACC TTTGTATTCCATGAT TERM 446 445427 - 445437 + G 73 -6.8 -4.28361 | opp_overlap 445423 TCTGCCGTAAACCCT CGTC AGG GACG TTTTGCTAAGCTTGG yjgP 444623 - 445657 + | inner membrane protein yjgQ 445650 - 446726 + | inner membrane protein TERM 447 446784 - 446730 - T 78 -10.4 -2.64934 | opp_overlap 446730 446745, overlap 446727 446745 AGAAAATTATAATAT TTAATTAAATAAAAAGGAGATGCATT TAA AATGTATCTCCTTTTTTTGTATTTAA TTTTGGTACTTAATA TERM 448 446730 - 446784 + T 100 -12.6 -4.36411 | opp_overlap 446727 446730 446745, overlap 446745 AGAAAATTATAATAT TTAATTAAATAAAAAGGAGATGCATT TAA AATGTATCTCCTTTTTTTGTATTTAA TTTTGGTACTTAATA TERM 449 446769 - 446745 - T 100 -10.1 -5.38326 | opp_overlap 446730 446745, overlap 446730 TTAATTAAATAAAAA GGAGATGCATT TAA AATGTATCTCC TTTTTTTGTATTTAA TERM 450 446745 - 446769 + T 100 -12.3 -5.88197 | opp_overlap 446745 446730, overlap 446730 TTAATTAAATAAAAA GGAGATGCATT TAA AATGTATCTCC TTTTTTTGTATTTAA VF_0416 447276 - 446800 - | proline-rich antigen TERM 451 447312 - 447288 - R 77 -3.5 -5.42514 | CCATAAATTAAAAAA CTGACAGCAGT ATA ACGACTGTGAG GGAAAAAATGAAAAT TERM 452 447472 - 447486 + r 73 -8.6 -3.17392 | opp_overlap 447472 447469 AATTGGTATACACGA CGGATT CAA AATCCG TTGCCTTCGGGCGTG TERM 453 447537 - 447570 + r 87 -13.3 -2.87931 | opp_overlap 447544, overlap 447540 447544 GGTACCATATTTAAA CGATAAAGCCTCGAT GAAA ATCGGGGCTTTGTTG TATCTGGAGAATGGA TERM 454 447540 - 447567 + r 90 -11.4 -3.58905 | opp_overlap 447544, overlap 447537 447544 ACCATATTTAAACGA TAAAGCCTCGAT GAAA ATCGGGGCTTTG TTGTATCTGGAGAAT TERM 455 447544 - 447563 + r 100 -10 -4.42974 | opp_overlap 447544, overlap 447540 447537 TATTTAAACGATAAA GCCTCGAT GAAA ATCGGGGC TTTGTTGTATCTGGA TERM 456 447563 - 447544 - R 78 -7.8 -4.14725 | opp_overlap 447540 447537 447544 TATTTAAACGATAAA GCCTCGAT GAAA ATCGGGGC TTTGTTGTATCTGGA TERM 457 447633 - 447614 - R 70 -4.2 -4.7254 | ACTTCTTATTAAAAA GCCCCAAC CTAA ATCAGGGC TCTAGTACTAGTATT VF_0417 447920 - 447663 - | hypothetical protein dgkA 448340 - 447954 - | diacylglycerol kinase TERM 458 448422 - 448441 + r 100 -12.2 -4.81551 | opp_overlap 448422 ACAAGCATAAAAAAA GCCTCATC AGAT GATGAGGC TTTTTAATATGGCTC TERM 459 448441 - 448422 - R 100 -12.2 -5.73339 | opp_overlap 448422 ACAAGCATAAAAAAA GCCTCATC AGAT GATGAGGC TTTTTAATATGGCTC TERM 460 448566 - 448582 + r 72 -9.5 -2.62616 | opp_overlap 448568, overlap 448538 448568 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 461 448754 - 448738 - R 72 -5.9 -4.45544 | opp_overlap 448738, overlap 448732 CTTCAGTAACTAAAA CCTTGTT ATA AACAAAG CTTTAAAATGTGGCT TERM 462 449106 - 449122 + r 72 -9.5 -2.62616 | opp_overlap 449108, overlap 449078 449108 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 463 449311 - 449288 - R 81 -7.6 -4.29139 | gap 1, opp_overlap 449294 GTAAACTTAAAACAA CACCA-ACAAT CTT ATTGTATGGTG CCCGGAGGCGGAATC TERM 464 449340 - 449356 + r 72 -9.5 -2.62616 | opp_overlap 449342, overlap 449342 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA mltC 450627 - 449539 - | membrane-bound lytic murein transglycosylase C TERM 465 449804 - 449823 + g 86 -7.9 -4.89063 | opp_overlap 449803 449804 GGATTAAATAAATAC TCAGGAG TTGGAT CTCCTGA TTTGTTTTTAACTAA TERM 466 450724 - 450699 - R 100 -11.3 -4.55023 | opp_overlap 450704 CTTAATAGCATAAAA TTAAAGCAGCC AAAT GACTGCTTTAA TGTAAAAGTGATTAT yggX 451008 - 450736 - | hypothetical protein mutY 452063 - 451011 - | adenine DNA glycosylase TERM 467 451708 - 451697 - G 73 -5.8 -4.53707 | AAGAAAGCGATAAAA CAGC GCCG GCTG TTGAGCGACCAATAC trmB 452308 - 453024 + | tRNA (guanine-N(7))-methyltransferase TERM 468 453072 - 453055 - f 75 -7 -4.09827 | opp_overlap 453055 TACAATATAATTAAA GCCAAC CTGAGT GTTGGC TTTTTTGTCCTTGCT TERM 469 453055 - 453072 + F 89 -7 -5.38249 | opp_overlap 453055 TACAATATAATTAAA GCCAAC CTGAGT GTTGGC TTTTTTGTCCTTGCT yneH 453108 - 454028 + | glutaminase yggW 455292 - 454132 - | coproporphyrinogen III oxidase rdgB 455892 - 455296 - | putative deoxyribonucleotide triphosphate pyrophosphatase VF_0426 456334 - 455903 - | hypothetical protein TERM 470 456233 - 456254 + g 84 -2.3 -5.72622 | gap 1 GAATGTGGAGTTGAA TGCCG-AGTA GTG TACTTCGACA TTTTTTATTTGTACA TERM 471 456389 - 456372 - R 90 -8.4 -5.36441 | opp_overlap 456372 456371, overlap 456355 CTTCCATATAAAAAA GCCGAG GGTTAA CTCGGC ATTAATCGTTATTTT yggU 456691 - 456404 - | hypothetical protein yggT 457253 - 456699 - | inner membrane protein proC 458120 - 457302 - | pyrroline-5-carboxylate reductase TERM 472 457600 - 457581 - G 87 -5 -5.38054 | overlap 457588 TTCCATAAATAAAAA GAAATACG CAGG CGCACTTC CTGCCGCTGCAATTA yggS 458914 - 458204 - | hypothetical protein pilT 458938 - 459975 + | transporter pilU 459978 - 461078 + | pili retraction protein PilU TERM 473 461162 - 461128 - T 80 -10.3 -3.01125 | opp_overlap 461131, overlap 461125 461131 ACGCTCTAGAAACTA TAAGAGCAGTAAT ACGTAAATG ATTACTGCTCTTA ATATCTGCTTTTGAT TERM 474 461159 - 461131 - T 71 -7.6 -3.64915 | opp_overlap 461131, overlap 461128 461125 CTCTAGAAACTATAA GAGCAGTAAT ACGTAAATG ATTACTGCTC TTAATATCTGCTTTT yqgF 461643 - 461218 - | Holliday junction resolvase-like protein yqgE 462203 - 461640 - | hypothetical protein TERM 475 462301 - 462278 - R 83 -10.4 -3.16921 | ACCAATTGGTATTAA TATTGAGGAG TTGC CCCCTCAATA CAGTTAGAATGTGAT gshB 463263 - 462316 - | glutathione synthetase rsmE 464008 - 463277 - | hypothetical protein endA 464786 - 464082 - | DNA-specific endonuclease I yggI 465378 - 464878 - | hypothetical protein TERM 476 465520 - 465491 - R 87 -10.9 -3.35597 | opp_overlap 465498, overlap 465476 465498 TTCATGCTGTAAACA TAAAAAAGGAAGC CGAA GCTTCCTTTTTAA ATTCAGAAATAAGCA TERM 477 465513 - 465498 - R 95 -9 -5.56264 | opp_overlap 465498, overlap 465491 TGTAAACATAAAAAA GGAAGC CGAA GCTTCC TTTTTAAATTCAGAA TERM 478 465498 - 465513 + r 93 -9 -4.74103 | opp_overlap 465498 465491 TGTAAACATAAAAAA GGAAGC CGAA GCTTCC TTTTTAAATTCAGAA metK 466698 - 465544 - | S-adenosylmethionine synthetase TERM 479 468523 - 468551 + G 75 -10.3 -3.1544 | opp_overlap 468525 ACGTCTAACTCCTAA CATGAGCACATGG CGT CCATGTGATCAAG TTGAGTCTGCTGTAG TERM 480 468549 - 468525 - g 81 -11.5 -3.06261 | opp_overlap 468523 GTCTAACTCCTAACA TGAGCACATGG CGT CCATGTGATCA AGTTGAGTCTGCTGT tktA 467063 - 469057 + | transketolase TERM 481 469106 - 469131 + F 100 -9.1 -5.243 | opp_overlap 469104 469106 469126 AAAATAAGATGAAGA GCGAAGTTATT GAAA GGTAACTTCGC TTTTTTGATCCTTTA epd 469202 - 470221 + | erythrose 4-phosphate dehydrogenase pgk 470388 - 471551 + | phosphoglycerate kinase TERM 482 471562 - 471583 + F 100 -10.2 -4.86939 | opp_overlap 471560 471562 CATAATTATTTAAGA GCGGGAAT CTAATC ATTCCCGC TTTTTACGTTTGTTG TERM 483 471583 - 471562 - f 80 -10.2 -3.13309 | opp_overlap 471562, overlap 471560 CATAATTATTTAAGA GCGGGAAT CTAATC ATTCCCGC TTTTTACGTTTGTTG fbaA 471707 - 472783 + | fructose-bisphosphate aldolase TERM 484 472815 - 472845 + T 83 -10.7 -3.14745 | gap 1, opp_overlap 472815 472822, overlap 472822 CTCGAATTGAGTTAA TAAAAAA-CCCGCT GATT AGCGGGTTTTTTTA TGTCTGTTATAAGGG TERM 485 472844 - 472815 - T 87 -12.3 -3.09933 | opp_overlap 472815 472822, overlap 472822 CTCGAATTGAGTTAA TAAAAAACCCGCT GATT AGCGGGTTTTTTT ATGTCTGTTATAAGG TERM 486 472822 - 472837 + T 100 -10.4 -5.77988 | opp_overlap 472815 472822, overlap 472815 TGAGTTAATAAAAAA CCCGCT GATT AGCGGG TTTTTTTATGTCTGT TERM 487 472837 - 472822 - T 100 -10.4 -5.4833 | opp_overlap 472822 472815, overlap 472815 TGAGTTAATAAAAAA CCCGCT GATT AGCGGG TTTTTTTATGTCTGT TERM 488 472943 - 472973 + T 77 -9.8 -3.01422 | opp_overlap 472948, overlap 472948 AGTGACTTCTAAATA AAAAAGCAGCCTGT AAT ACAGACTGCTTTTA TCGTTTCTAGAGCTA TERM 489 472968 - 472948 - T 100 -11.9 -5.63517 | opp_overlap 472948 472943 CTTCTAAATAAAAAA GCAGCCTGT AAT ACAGACTGC TTTTATCGTTTCTAG TERM 490 472948 - 472968 + T 100 -9.7 -4.64846 | opp_overlap 472948, overlap 472943 CTTCTAAATAAAAAA GCAGCCTGT AAT ACAGACTGC TTTTATCGTTTCTAG srmB 474249 - 473008 - | ATP-dependent RNA helicase SrmB TERM 491 473515 - 473546 + g 80 -8.2 -4.38154 | AATTGAGCGTTCTGC TTGCTCTGTTAAGA TATT TTTTAACAGATCAA TTTTATGAGCCATGT yfiC 475042 - 474338 - | S-adenosyl-L-methionine-dependent methyltransferase brnQ 475331 - 476644 + | branched chain amino acid ABC transporter TERM 492 476681 - 476712 + T 84 -6.7 -5.20781 | gap 1, opp_overlap 476681 GACTAGAGATTACAA GAGCGAGTATAACT GTTTA AGTTC-ACTCGCTC TTTTCTTTTATAGTA TERM 493 476712 - 476681 - T 75 -8.9 -3.50492 | gap 1, opp_overlap 476681 GACTAGAGATTACAA GAGCGAGTATAACT GTTTA AGTT-CACTCGCTC TTTTCTTTTATAGTA fldB 477284 - 476766 - | flavodoxin FldB xerD 477430 - 478326 + | site-specific tyrosine recombinase XerD dsbC 478401 - 479177 + | protein disulfide isomerase II TERM 494 479201 - 479218 + F 100 -9.1 -5.7946 | AGCCATTCATTTTAA TCCCCGT ATAT GCGGGGA TTTTTTTATTGAAAA TERM 495 479363 - 479347 - g 71 -9.5 -2.82015 | opp_overlap 479342, overlap 479351 GCGAGAGGGATTACA TCAAGCT CGC AGCTTGA GCGTGGTGCAAAATT recJ 479248 - 480987 + | ssDNA exonuclease RecJ TERM 496 481055 - 481027 - f 77 -9.8 -3.06831 | opp_overlap 481022 481027 481030, overlap 481030 TTAATTTTCACTGAA CAACTCATTAAA AAAGA CTTAATGAGTTG TTATGTTTATGGTCT TERM 497 481027 - 481055 + F 85 -9.1 -3.92485 | opp_overlap 481027 481030, overlap 481022 481030 TTAATTTTCACTGAA CAACTCATTAA AAAAGAC TTAATGAGTTG TTATGTTTATGGTCT TERM 498 481063 - 481092 + F 70 -2.1 -5.27335 | overlap 481066 ATGAGTTGTTATGTT TATGGTCTAGTTG CAAA CAGATAGGCCTTA TTTTTCTTTGGGAAG TERM 499 481125 - 481146 + F 71 -5.2 -4.48877 | AAATAAAAAACGTTT TGGTGTGA TGTTTT TTACACCA TTTTCTCAATCTTTA prfB 481257 - 482355 + | peptide chain release factor RF-2 lysU 482369 - 483874 + | lysyl-tRNA synthetase TERM 500 483929 - 483890 - f 72 -5 -4.82212 | opp_overlap 483900, overlap 483892 483900 TAAAGAATAAATAAA GATGATGAAAGAGCGGCT AATT AGCCGCTCTTTTTTTATT TATCTTACTCAAAGC TERM 501 483927 - 483892 - f 76 -7.6 -3.98538 | opp_overlap 483900, overlap 483890 483900 AAGAATAAATAAAGA TGATGAAAGAGCGGCT AATT AGCCGCTCTTTTTTTA TTTATCTTACTCAAA TERM 502 483919 - 483900 - f 100 -13.6 -3.87438 | opp_overlap 483900, overlap 483892 483890 ATAAAGATGATGAAA GAGCGGCT AATT AGCCGCTC TTTTTTTATTTATCT TERM 503 483900 - 483919 + F 100 -13.6 -6.04953 | opp_overlap 483900 483892 483890 ATAAAGATGATGAAA GAGCGGCT AATT AGCCGCTC TTTTTTTATTTATCT TERM 504 485436 - 485426 - g 84 -6.8 -4.90778 | opp_overlap 485424 485426 CGCAGTGAAACAAAA CGCA GTT TGCG TGTTATCCGTGAAAA vpsR 484262 - 485599 + | sigma-54 dependent transcriptional regulator VpsR TERM 505 485646 - 485619 - T 77 -8.5 -3.67775 | opp_overlap 485619 ATCCTTATTGAAGAA TAGGCTTACCT TGAATT AGGTAGGCCTA TTTTTTTAGTTGAAG TERM 506 485619 - 485646 + T 100 -10.7 -5.63103 | opp_overlap 485619 ATCCTTATTGAAGAA TAGGCTTACCT TGAATT AGGTAGGCCTA TTTTTTTAGTTGAAG mutH 486320 - 485652 - | DNA mismatch repair protein TERM 507 487220 - 487206 - g 79 -5.8 -4.85599 | TGTATCGGACAAAAA CAAAAA TGG TTTTTG TTACGCTTAGAATGT nudH 486918 - 487430 + | dinucleoside polyphosphate hydrolase TERM 508 487877 - 487862 - g 72 -3.2 -5.17786 | overlap 487864 CAACAAAAGGAAAAA CGTCAG TTTA CTGAAG TTGAAGAATCCTTTT TERM 509 488178 - 488168 - g 72 -3.2 -5.08824 | CGCCGAGCTAAAAAA CGCT TTG AGCA AGAATTAAATACCGA ptsP 487469 - 489730 + | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain VF_0458 489730 - 490533 + | hypothetical protein lgt 490545 - 491378 + | prolipoprotein diacylglyceryl transferase TERM 510 491402 - 491424 + F 95 -8.5 -5.53288 | gap 1, opp_overlap 491401 AGTTTTATTATATAG TGGCCTC-TG AACT CATGAGGCCA TTTTTTTAAGTTAAA TERM 511 491623 - 491611 - g 71 -6.3 -4.1585 | TGACAACGCGTAAAA GCTTT TGG AAAGC GGCAGTAGCTGAAAT thyA 491451 - 492308 + | thymidylate synthase TERM 512 492357 - 492335 - T 100 -15.6 -5.62045 | opp_overlap 492335 AGATATAATAAAAAA GCCCCGAAGC ATA ACTTCGGGGC TTTTTTTATTCGTGT TERM 513 492335 - 492357 + T 100 -14.9 -5.85737 | opp_overlap 492335 AGATATAATAAAAAA GCCCCGAAG CATAA CTTCGGGGC TTTTTTTATTCGTGT VF_0461 493527 - 492382 - | sodium-dependent phosphate transporter nhaR 493943 - 494833 + | transcriptional activator NhaR hlyU 494897 - 495193 + | transcriptional activator HlyU TERM 514 495252 - 495279 + T 93 -10 -4.09117 | opp_overlap 495251 495259, overlap 495259 TCAAATTGCAGATAT AAAAAAACCGAC CTAA GTCGGTTTTTTC TTATTTCTAACTGAG TERM 515 495272 - 495259 - T 93 -8.1 -5.76633 | opp_overlap 495252 495259, overlap 495251 GCAGATATAAAAAAA CCGAC CTAA GTCGG TTTTTTCTTATTTCT TERM 516 495259 - 495272 + T 93 -8.1 -5.74288 | opp_overlap 495259 495251, overlap 495252 GCAGATATAAAAAAA CCGAC CTAA GTCGG TTTTTTCTTATTTCT rpsT 495490 - 495308 - | 30S ribosomal subunit protein S20 TERM 517 495402 - 495436 + g 84 -10.1 -3.86822 | overlap 495405 ATGCGGTCTAGAAGT GGAGTTGCAGTTGCT AGTGC AGCAGTTGCAGCTTC TTTATCGCCAGCTTC TERM 518 495405 - 495433 + g 75 -8.2 -4.06419 | overlap 495402 CGGTCTAGAAGTGGA GTTGCAGTTGCT AGTGC AGCAGTTGCAGC TTCTTTATCGCCAGC TERM 519 495438 - 495465 + g 93 -5.7 -5.58454 | gap 1, overlap 495439 GCAGTTGCAGCTTCT TTATCGCCAGCT TCGAT AGCTG-CGATAG TTTTTTTCATGTAAG TERM 520 495900 - 495911 + G 74 -4.4 -5.00196 | TTATGGGCGCAGGAG CATC GGCT GATG TTTTCTTCTTTGCAA yceN 495788 - 497347 + | inner membrane protein ribF 497438 - 498370 + | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 521 499495 - 499478 - g 79 -4.9 -5.02074 | overlap 499480 GTAGTTGGTAAAAAA TACGATT TAGA AATCGCA AACCCAGTAGGTTCA TERM 522 500154 - 500109 - g 76 -6.9 -4.33582 | gap 1, opp_overlap 500110 500111 500113, overlap 500106 500110 500111 500113 CTGAAGAAGAAAGAA CGCACAGTGCAGATCTTTACCT AGA AGGTTCAGATCAACACCGTG-G TTGGTTCCAATCGTC TERM 523 500153 - 500111 - g 76 -10.6 -2.50354 | opp_overlap 500111 500110 500113, overlap 500109 500110 500106 500113 GAAGAAGAAAGAACG CACAGTGCAGATCTTTACCT AGA AGGTTCAGATCAACACCGTG GTTGGTTCCAATCGT ileS 498407 - 501265 + | isoleucyl-tRNA synthetase TERM 524 501307 - 501336 + G 70 -9.9 -2.70946 | opp_overlap 501307, overlap 501306 501305 501309 CTGCTTAAAGAATCA GGACTCCGCTGGC TATG GCTAGCGGGGATC ATCTTTATGGCAGAC TERM 525 501653 - 501665 + G 72 -3.4 -5.08601 | overlap 501657 TTCATGGTTTCGTTG TCGA TTATC TCGA TTTTTATTGGGGTAA lspA 501265 - 501780 + | lipoprotein signal peptidase TERM 526 501828 - 501805 - f 75 -8.8 -3.48466 | opp_overlap 501805, overlap 501801 AGCATAATCAATGAA CGCTACCCGA GCAG TCGAGTGGCG TTTTTTTTCAAGGAA TERM 527 501805 - 501828 + F 95 -8.8 -5.75342 | opp_overlap 501805 501801 AGCATAATCAATGAA CGCTACCCGA GCAG TCGAGTGGCG TTTTTTTTCAAGGAA fkpB 501852 - 502280 + | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) ispH 502305 - 503249 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase dapB 503322 - 504131 + | dihydrodipicolinate reductase TERM 528 504142 - 504164 + F 100 -16.4 -5.81412 | opp_overlap 504142, overlap 504161 TTTAATTATTACTAA GCCCGAATCA ATG TGATTCGGGC TTTTTTTTAACTAAA TERM 529 504164 - 504142 - f 100 -16.4 -3.25015 | opp_overlap 504142 504161 TTTAATTATTACTAA GCCCGAATCA ATG TGATTCGGGC TTTTTTTTAACTAAA TERM 530 504477 - 504455 - f 84 -6.4 -5.07053 | opp_overlap 504458 AACCATTCTAAAAAA TGATTTTTTG ATG CAAAAACTCA TTAAGAGTAAAAAAG TERM 531 504636 - 504650 + F 86 -2.8 -5.79588 | overlap 504649 CAATTTGTCAAAAAT CGAGCT TGT AGTTTG TTTTTTTGGTTTTAA carA 504726 - 505883 + | carbamoyl phosphate synthase small subunit TERM 532 506859 - 506840 - g 72 -8.6 -3.53444 | opp_overlap 506826 GCACTTGCTTCTAAA GCAACAGG TTTC CCTATTGC AAAAATTGCAGCGAA carB 505901 - 509131 + | carbamoyl phosphate synthase large subunit TERM 533 509178 - 509203 + T 100 -12.7 -5.75822 | opp_overlap 509178 AAGTAATAATAAAAA TCCCGAAGAAT GAGA GTTCTTCGGGA TTTTTTTGGTTTATA TERM 534 509203 - 509178 - T 100 -12 -5.3321 | opp_overlap 509178 AAGTAATAATAAAAA TCCCGAAGAA TGAGAG TTCTTCGGGA TTTTTTTGGTTTATA dacB 510686 - 509280 - | D-alanyl-D-alanine carboxypeptidase/endopeptidase TERM 535 510801 - 510784 - R 100 -9.1 -5.72622 | opp_overlap 510784 510783 GTCACAAATAAAAAA CGCCCAC CGAG GTGAGCG CTTTATTTAAGTAAG ompU 511797 - 510829 - | Outer membrane protein U porin OmpU TERM 536 512533 - 512515 - g 74 -3.8 -5.10933 | overlap 512524 TGATTTAAAAGAAAA TGCTGAAT ATC ACGCAGCA CGTGAAGAGCAAGGT greA 512384 - 512857 + | transcription elongation factor GreA TERM 537 512884 - 512925 + T 84 -6.7 -5.13137 | gap 1, opp_overlap 512884 TGTATGAAACACAAA GGCCGCA-TAGTTAGCTCTA CTT TAAAGATAACTAATACGGCC TTTTTAATTTCTTTA TERM 538 512925 - 512884 - T 100 -11.1 -4.36903 | gap 1, opp_overlap 512884 TGTATGAAACACAAA GGCCGCA-TAGTTAGCTCTA CTT TAAAGATAACTAATACGGCC TTTTTAATTTCTTTA yhbY 513253 - 512957 - | RNA-binding protein TERM 539 513210 - 513230 + g 79 -8.3 -4.05091 | GGTTTTAGGTTGTGA GCAAGACCT TTA AGGTATTGC TTCTGTTTTGTGCTT TERM 540 513943 - 513931 - g 71 -4.1 -4.84363 | opp_overlap 513931 TCAAAGTAGTAAAAA TCAGA AAG CCTGA TTCATCACGTGCTCG rrmJ 513372 - 514001 + | 23S rRNA methyltransferase J hflB 514087 - 516060 + | ATP-dependent zinc-metalloprotease TERM 541 516048 - 516036 - f 80 -2.7 -5.68438 | overlap 516037 TGATGAAACAAAAAA CGATT CTG AATCA TCTGAAAAGTAAGAT TERM 542 516105 - 516077 - f 81 -7.4 -4.41237 | opp_overlap 516082, overlap 516082 ATGAAATAAGATAAA TGAAACCCCGAG TTATG CTCGGGGTTTTT GTATTTATTAAAGGT TERM 543 516082 - 516100 + F 100 -12.4 -5.28414 | opp_overlap 516077 516082 ATAAGATAAATGAAA CCCCGAGT TAT GCTCGGGG TTTTTGTATTTATTA TERM 544 516100 - 516082 - f 100 -11.7 -4.22226 | opp_overlap 516082, overlap 516077 ATAAGATAAATGAAA CCCCGAG TTATG CTCGGGG TTTTTGTATTTATTA folP 516129 - 516965 + | 7,8-dihydropteroate synthase glmM 517014 - 518351 + | phosphoglucosamine mutase secG 518503 - 518835 + | preprotein translocase subunit SecG TERM 545 519165 - 519150 - f 75 -8.2 -3.80573 | opp_overlap 519150 TCCAGCAGTATTAAA CCCCGC AATT ACGGGG TTTTTTGCTATCTGA TERM 546 519150 - 519165 + F 89 -7.5 -5.24989 | opp_overlap 519150 TCCAGCAGTATTAAA CCCCG CAATTA CGGGG TTTTTTGCTATCTGA TERM 547 519203 - 519215 + F 95 -6.2 -6.09196 | opp_overlap 519202 TGTTTTTTAAGAATT GGGC CTTGA GCCC TTTTTTTGTTTTCAG VF_0484 519240 - 519695 + | hypothetical protein TERM 548 519928 - 519913 - g 70 -5.4 -4.46212 | overlap 519922 GGTTGCAGTAGAAAA CGTTGA AAAT CCAACG CTTGAAATTTCTATT nusA 519713 - 521200 + | transcription elongation factor NusA TERM 549 521360 - 521350 - g 70 -5.4 -4.37198 | opp_overlap 521350 AACTGAAAGTGAAAA GCAA TCT TTGC TGGTTCACTTGAAGA TERM 550 521804 - 521774 - g 73 -2.4 -5.2166 | overlap 521777 521778 GAACAAGCGAAAAAA GAAGCTGAGGAGCT TAA AGCTCGTCAGGAAC TAGAAGCGACTCGTA TERM 551 521801 - 521777 - g 83 -7.1 -4.67173 | overlap 521774 521778 CAAGCGAAAAAAGAA GCTGAGGAGCT TAA AGCTCGTCAGG AACTAGAAGCGACTC TERM 552 521800 - 521778 - g 80 -10.6 -3.38677 | overlap 521777 521774 AAGCGAAAAAAGAAG CTGAGGAGCT TAA AGCTCGTCAG GAACTAGAAGCGACT TERM 553 521922 - 521912 - g 75 -5.4 -4.77698 | GAAGAGCAAAAGAAA TCAG CTG CTGA AAAAGACGCTGATTA TERM 554 522036 - 522026 - g 79 -3.2 -5.4505 | overlap 522032 522033 CGTCGTAAGAAAAAA GCAA AAC CTGC AGAAGCTGCTGCTCC TERM 555 522881 - 522893 + G 71 -6.3 -4.14392 | CTAGAAGCGATTCTT CTTCA GTC TGAAG TTTTAGAACTTACAG TERM 556 523272 - 523253 - g 75 -8 -4.01411 | overlap 523261 CAGCAAAAAGCGAAA TTAGAGAA CATG TTCTCTAA CATGACTGCTGGTGA TERM 557 523722 - 523741 + G 70 -9.4 -2.72511 | opp_overlap 523735, overlap 523721 523724 GCAACCCAATCCGTG TACTACGT GATA ACGTAGTA ATTTACGAAGGTGAG infB 521225 - 523906 + | translation initiation factor IF-2 TERM 558 523999 - 523965 - f 74 -9.3 -3.06696 | gap 1, opp_overlap 523966 523968, overlap 523968 CGGTTGTTGAATACA CCATGGGGGGC-TGGT AATT ACCAAGCCCCCCATCT TTCTAAGAGAGAAAA TERM 559 523966 - 523998 + F 95 -12.8 -3.85698 | gap 1, opp_overlap 523965 523968, overlap 523968 GGTTGTTGAATACAC CATGGGGGGC-TGGT AATT ACCAAGCCCCCCATC TTTCTAAGAGAGAAA TERM 560 523968 - 523996 + F 100 -15.4 -3.51934 | gap 1, opp_overlap 523965 523968, overlap 523966 TTGTTGAATACACCA TGGGGGGC-TGGT AATT ACCAAGCCCCCCA TCTTTCTAAGAGAGA TERM 561 523996 - 523968 - f 100 -15.4 -2.7535 | gap 1, opp_overlap 523968 523966, overlap 523965 TTGTTGAATACACCA TGGGGGGC-TGGT AATT ACCAAGCCCCCCA TCTTTCTAAGAGAGA rbfA 524018 - 524425 + | ribosome-binding factor A truB 524425 - 525375 + | tRNA pseudouridine synthase B TERM 562 525429 - 525405 - f 75 -7.2 -4.19947 | opp_overlap 525405 TAAAAGAATTAGAAA GAGCAAAAGC TGTTG GTTTTTGCTC TTTTTTTATTGCTTT TERM 563 525405 - 525429 + F 100 -10.1 -5.9003 | opp_overlap 525405 TAAAAGAATTAGAAA GAGCAAAAGCT GTT GGTTTTTGCTC TTTTTTTATTGCTTT rpsO 525539 - 525808 + | 30S ribosomal protein S15 TERM 564 525858 - 525842 - f 89 -9.4 -4.26344 | opp_overlap 525842 ACAGTTTGACGAAAA GGAGCG TTTAT CGCTCC TTTTTTTATGCGCTA TERM 565 525842 - 525858 + F 100 -9.4 -5.626 | opp_overlap 525842 ACAGTTTGACGAAAA GGAGCG TTTAT CGCTCC TTTTTTTATGCGCTA TERM 566 526010 - 526060 + F 100 -18.6 -3.28003 | overlap 526026 AAGTCGGCCACTAGG TCGCGGCTATTACAAATTGTCTTT AAT GAAGTCAATTTGTACTAGTCGCGA TTAGTAGTATGTTGA TERM 567 526133 - 526092 - f 74 -9.1 -3.04404 | gap 1, overlap 526091 TTATCAACTACAAAT TTCTTATTTTT-GATAGCAC AAC GTGCCATGTAAAAATAAGAA TAAAGGAAAAAAAAT TERM 568 528251 - 528223 - g 71 -6.7 -4.04927 | overlap 528228 528240 528241 528244 CTAAGTATTAAAGAA GCAAATGCTGAAC TAA ACCCAGCACCTGC TGCTGAAGCAAAAGA pnp 526147 - 528276 + | polynucleotide phosphorylase/polyadenylase TERM 569 528318 - 528335 + F 100 -11.3 -5.16132 | opp_overlap 528318, overlap 528334 AAAGCATGTTATAAA GGGAGCA GAAA TGCTCCC TTTTCTTTTAATATA TERM 570 528335 - 528318 - f 93 -11.3 -3.91434 | opp_overlap 528318 528334 AAAGCATGTTATAAA GGGAGCA GAAA TGCTCCC TTTTCTTTTAATATA nlpI 528397 - 529380 + | lipoprotein NlpI TERM 571 529427 - 529406 - T 93 -7.3 -5.58179 | opp_overlap 529406 TAGTATAATAAAAAA GCCTTATTC ATAT GGATAAGGC TTTTTTGTATTCAAA TERM 572 529406 - 529427 + T 100 -9.5 -5.47159 | opp_overlap 529406 TAGTATAATAAAAAA GCCTTATTC ATAT GGATAAGGC TTTTTTGTATTCAAA yhbV 530334 - 529456 - | collagenase-like protease YhbV yhbU 531345 - 530344 - | collagenase-like protease YhbU TERM 573 531197 - 531208 + g 72 -4.4 -4.70659 | TGAACATATTGCACG GCTT TCTC AAGC TTTTTACCTGTAAAG TERM 574 531287 - 531302 + g 72 -4.6 -4.72272 | opp_overlap 531276 TAAACAGCATCGGCG CCGCAA TCAA TAGCGG TTTTTAGTGCGGGCA gmr 533590 - 531563 - | modulator of RNase II stability TERM 575 532772 - 532761 - G 80 -4.4 -5.243 | opp_overlap 532761 TAAAGCATGAAAAAA GGAA TGTC TTCC TTAATCATCTTTTCT yhbT 533780 - 534316 + | lipid carrier protein TERM 576 534711 - 534724 + G 73 -5.9 -4.5442 | overlap 534722 CACTCTAAATGGGAA GTCCC TGAA GGGGC TTTTATGATTAAAGC yhbS 534306 - 534809 + | acyltransferase TERM 577 534818 - 534847 + T 90 -8 -5.08088 | opp_overlap 534820, overlap 534820 ATTGTAATAGACGAA AAGAATGCTCAT CTTGCT ATGAGCATTCTA TTTTTATTGGCAATT TERM 578 534845 - 534820 - T 100 -10.6 -4.43213 | opp_overlap 534818 534820 TGTAATAGACGAAAA GAATGCTCAT CTTGCT ATGAGCATTC TATTTTTATTGGCAA TERM 579 534820 - 534845 + T 100 -10.6 -4.16307 | opp_overlap 534820, overlap 534818 TGTAATAGACGAAAA GAATGCTCAT CTTGCT ATGAGCATTC TATTTTTATTGGCAA VF_0497 535332 - 534865 - | hypothetical protein TERM 580 535024 - 535037 + g 70 -3.1 -4.95957 | GCTCATCCCTTTTGT CAGTG TGCC CATTG TTTTTAATTGCTTTG holD 535542 - 535943 + | DNA polymerase III, psi subunit TERM 581 535962 - 535946 - g 73 -5.9 -4.51174 | opp_overlap 535946 535955 535957, overlap 535941 TTATGACAATTAAAA TTCAAAC AAC GTCTGAA TCTCATTTAGATGAT TERM 582 536234 - 536224 - g 85 -6.8 -5.10461 | TGTATGGAACAAAAA GCTG AAT CAGC ATGGCTCGAAGTTCG rimI 535933 - 536379 + | acetylase for 30S ribosomal subunit protein S18 prfC 536476 - 538056 + | peptide chain release factor 3 TERM 583 538079 - 538114 + F 80 -10.6 -2.96216 | opp_overlap 538081 538087, overlap 538087 GTTGCTTATCAAATA AATAAAAACGGAGTCT TAAC GGACTCCGTTTTTGTA TCTATAGTAATAGCA TERM 584 538112 - 538081 - f 100 -10.3 -4.49556 | opp_overlap 538079 538087, overlap 538087 TGCTTATCAAATAAA TAAAAACGGAGTC TTAACG GACTCCGTTTTTG TATCTATAGTAATAG TERM 585 538087 - 538106 + F 100 -10 -5.07275 | opp_overlap 538081 538087, overlap 538079 TCAAATAAATAAAAA CGGAGTCT TAAC GGACTCCG TTTTTGTATCTATAG TERM 586 538106 - 538087 - f 100 -9.3 -5.5454 | opp_overlap 538087 538079, overlap 538081 TCAAATAAATAAAAA CGGAGTC TTAACG GACTCCG TTTTTGTATCTATAG VF_2590 538202 - 538315 + | hypothetical protein yjjV 538315 - 539091 + | Dnase TERM 587 540382 - 540394 + G 74 -6.3 -4.38927 | TCATTCGCACTATGT GGTTT CGC AAACC TTTCTTCTGTAGCGA yeiM 539290 - 540546 + | nucleoside transporter TERM 588 540570 - 540606 + F 84 -11.7 -3.14693 | opp_overlap 540570 540580, overlap 540580 AGCAGAACAGATAAT CATTATAAAACCCGCAT TAT GTGCGGGTTTTTTTATG TCTGTTACTCATGAA TERM 589 540606 - 540570 - f 81 -11 -2.83593 | opp_overlap 540570 540580, overlap 540580 AGCAGAACAGATAAT CATTATAAAACCCGCA TTATG TGCGGGTTTTTTTATG TCTGTTACTCATGAA TERM 590 540580 - 540596 + F 100 -10.1 -5.77988 | opp_overlap 540570 540580, overlap 540570 ATAATCATTATAAAA CCCGCAT TAT GTGCGGG TTTTTTTATGTCTGT TERM 591 540596 - 540580 - f 93 -9.4 -4.51699 | opp_overlap 540580 540570, overlap 540570 ATAATCATTATAAAA CCCGCA TTATG TGCGGG TTTTTTTATGTCTGT TERM 592 540683 - 540669 - f 70 -4.3 -4.65895 | TTTTTTATGCAAAAA GTTTG AGATG CAAAC CGATTGCGTTACCAC VF_0503 540832 - 541002 + | hypothetical protein deoC 541279 - 542055 + | deoxyribose-phosphate aldolase TERM 593 542127 - 542090 - f 93 -8.5 -4.69214 | overlap 542092 TAGCTAAGAAATAAA TCGACTTAGGTGAGACA TACT CGTCTCACCTACCTCAA CCCTACCTATTTTAA deoA 542171 - 543502 + | thymidine phosphorylase TERM 594 543832 - 543843 + G 79 -5.8 -4.90778 | GCCACTGGGAAATTG CAGG TGTA CCTG TTTTATTTGACTGGG deoB 543513 - 544745 + | phosphopentomutase TERM 595 544781 - 544753 - f 81 -6 -4.96501 | opp_overlap 544756, overlap 544756 TCCTATAAAAATAAA TAAGCAGTAGGG CCCTT CTCTACTGCTTT TTTTCTATTTTAAGT TERM 596 544778 - 544756 - f 82 -7.7 -4.56117 | opp_overlap 544756, overlap 544753 TATAAAAATAAATAA GCAGTAGGG CCCTT CTCTACTGC TTTTTTTCTATTTTA TERM 597 544756 - 544778 + F 100 -9.9 -5.9362 | opp_overlap 544756 544753 TATAAAAATAAATAA GCAGTAGGG CCCTT CTCTACTGC TTTTTTTCTATTTTA deoD 544817 - 545533 + | purine nucleoside phosphorylase TERM 598 545562 - 545593 + T 95 -8.8 -5.04325 | opp_overlap 545566, overlap 545566 AACCGTTAGAAATAA AAAAGGCGATGAGG TTAA TTTCATCGCCTTTC TTTTTATGCTTTACC TERM 599 545589 - 545566 - T 93 -8.2 -5.72622 | opp_overlap 545562 545566 GTTAGAAATAAAAAA GGCGATGA GGTTAATT TCATCGCC TTTCTTTTTATGCTT TERM 600 545566 - 545589 + T 100 -9.6 -5.00267 | opp_overlap 545566, overlap 545562 GTTAGAAATAAAAAA GGCGATGAGG TTAA TTTCATCGCC TTTCTTTTTATGCTT VF_0508 546193 - 545597 - | SMP protein precursor TERM 601 546467 - 546479 + G 81 -2.7 -5.66684 | TATCACCTCGTCATT TTGAT GAT ATCGA TTTTTTTGTCGGTTA serB 546319 - 547296 + | phosphoserine phosphatase TERM 602 547350 - 547330 - f 100 -11.3 -4.21773 | opp_overlap 547330 GTTTAATATAAATAA TGAGCTTTA TTA TAAAGCTCA TTTTTTTGCGTTAAA TERM 603 547330 - 547350 + F 100 -11.3 -5.53288 | opp_overlap 547330 GTTTAATATAAATAA TGAGCTTTA TTA TAAAGCTCA TTTTTTTGCGTTAAA VF_0510 547556 - 547771 + | fimbrial protein precursor VF_0511 547783 - 548220 + | hypothetical protein flp1 548228 - 549040 + | CpaB family Flp pilus assembly protein VF_0513 549044 - 550354 + | general secretion pathway protein D TERM 604 550367 - 550383 + G 71 -3.7 -4.88388 | TGAAAAAACTATATG TAATAGC TGT GCTTTTA TTTTTATCGGGTTGT TERM 605 550716 - 550706 - g 74 -4 -5.1101 | opp_overlap 550706 TTATTACTCAAAAAA TTGA ATA TCAA ATTTGTGGTTATGAG VF_0514 550351 - 550821 + | putative lipoprotein VF_0515 550871 - 552109 + | ATPase involved in chromosome partitioning tadA1 552116 - 553405 + | putative type IV secretion NTPase TERM 606 554068 - 554078 + G 71 -6.8 -4.02719 | AGGGATGTTATTTCA CGGT TGA ACCG TTTGATGTTTGATGC tadB1 553405 - 554322 + | TadB-like protein involved in pilus formation and/or protein secretion tadC1 554322 - 555194 + | bipartite nuclear localization signal containing protein tadD1 555187 - 555927 + | TPR repeat-containing protein tadE1 555936 - 556421 + | TadE-like protein tadF1 556396 - 556944 + | ATP/GTP-binding motif-containing protein tadG1 556941 - 558338 + | TadG-like protein TERM 607 558585 - 558545 - g 73 -7.7 -3.93556 | overlap 558577 ATTTATGCAAGTAAA TACTGAATTATCGCCTGAT GTT ATTAAGCGAACATTCAGTA ATGCAATGCAACAAG VF_0523 558354 - 559013 + | outer membrane protein TERM 608 559026 - 559059 + T 89 -9 -4.50627 | gap 1, opp_overlap 559024 559026 TGATAGTTAAAGATA GGCGGTGTTACTAAC GAAAG GTTGG-AATACCGCC TTTGTTTGCTAAATA phoQ2 560030 - 559068 - | sensory histidine kinase in two-compoent regulatory system with PhoP TERM 609 559254 - 559266 + g 71 -6.3 -4.21462 | opp_overlap 559253 TTGTTCTTCAGGAAT TGATG GGC CATCA TTTTCAATGCTCAAT phoQ1 561380 - 560037 - | sensory histidine kinase in two-compoent regulatory system with PhoP phoP 562063 - 561383 - | DNA-binding response regulator in two-component regulatory system with PhoQ TERM 610 561627 - 561642 + g 72 -3.2 -5.15526 | AATTGTAGAAATTGA CCGTCT ACAT GGATGG TTTTTGCTTTTATGT TERM 611 562159 - 562128 - R 95 -13.3 -3.53224 | opp_overlap 562131 562135, overlap 562131 562135 CATTTTGTTTTTAAA TAATAAAGCCCAT GAATTG ATGGGCTTTATTA AATTTAATTCACCTC TERM 612 562131 - 562156 + r 83 -10.6 -3.33399 | opp_overlap 562128 562131 562135, overlap 562135 TTTGTTTTTAAATAA TAAAGCCCAT GAATTG ATGGGCTTTA TTAAATTTAATTCAC TERM 613 562156 - 562131 - R 93 -10.6 -3.90744 | opp_overlap 562131 562135, overlap 562128 562135 TTTGTTTTTAAATAA TAAAGCCCAT GAATTG ATGGGCTTTA TTAAATTTAATTCAC TERM 614 562152 - 562135 - R 80 -7 -4.56978 | opp_overlap 562135 562131, overlap 562131 562128 TTTTTAAATAATAAA GCCCAT GAATTG ATGGGC TTTATTAAATTTAAT TERM 615 562135 - 562152 + r 78 -7 -4.29929 | opp_overlap 562131 562128 562135, overlap 562131 TTTTTAAATAATAAA GCCCAT GAATTG ATGGGC TTTATTAAATTTAAT VF_0527 564522 - 562177 - | hypothetical protein TERM 616 562811 - 562835 + g 77 -8.7 -3.9226 | opp_overlap 562811 562816 TGCTGTATTAATCGA CTTAAGAAAGC CTT GCTTTTTTGAG TTTGTAAACTGTCTT radA 564644 - 566026 + | DNA repair protein RadA fusA2 566222 - 568309 + | elongation factor G TERM 617 568366 - 568341 - T 100 -17.7 -4.76041 | opp_overlap 568341 TATAGTTATTAAAAA GCCCCGTAAGT GCAA ACTTACGGGGC TTTTTTTATTATTGA TERM 618 568341 - 568366 + T 100 -17.7 -5.95946 | opp_overlap 568341 TATAGTTATTAAAAA GCCCCGTAAGT GCAA ACTTACGGGGC TTTTTTTATTATTGA VF_0530 568617 - 568375 - | hypothetical protein TERM 619 568671 - 568686 + r 87 -10.4 -3.8186 | opp_overlap 568671 AGTAACAATAAAAAA GGGAGC GATA GCTCCC TTATTACTTAAGATG TERM 620 568686 - 568671 - R 100 -10.4 -5.66229 | opp_overlap 568671 AGTAACAATAAAAAA GGGAGC GATA GCTCCC TTATTACTTAAGATG codA 569987 - 568710 - | cytosine deaminase TERM 621 569953 - 569964 + g 86 -4.4 -5.5112 | AAACCTTCTTGATCT CGTA GAGC TACG TTTTTTATTAATAAA codB 571240 - 569999 - | cytosine permease TERM 622 570565 - 570549 - G 71 -5.1 -4.57482 | TTACCGATAAAGAAA GCAATCA TTG TGATAGC AACTGCACCCATTGG TERM 623 571309 - 571335 + r 71 -3.2 -5.18409 | opp_overlap 571311, overlap 571311 CGAGAGTCTAAAGAA AATTATATTATT GTC AATAATGTAATC TTTGTTTTTGTTTTG TERM 624 571333 - 571311 - R 70 -3.6 -4.89521 | opp_overlap 571311 571309 AGAGTCTAAAGAAAA TTATATTATT GTC AATAATGTAA TCTTTGTTTTTGTTT TERM 625 571453 - 571484 + r 81 -6 -4.87665 | overlap 571454 TTTGTTTCTTATTTT GCAGGAAATAGATT GTTG GATCTATTTTCTGG TTTTTATAAATAAAA TERM 626 571454 - 571483 + r 79 -9.5 -3.52117 | overlap 571453 TTGTTTCTTATTTTG CAGGAAATAGATT GTTG GATCTATTTTCTG GTTTTTATAAATAAA TERM 627 571588 - 571627 + r 74 -3 -5.38326 | gap 1, opp_overlap 571572 571591 571597, overlap 571589 571591 571596 TATATCTTTTAGATA AAACAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTGTCG TTTTTATTTCATTAA TERM 628 571624 - 571591 - R 100 -11.3 -4.52857 | gap 1, opp_overlap 571589 571588 571591 571596, overlap 571597 ATCTTTTAGATAAAA CAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTG TCGTTTTTATTTCAT TERM 629 571591 - 571624 + r 79 -9.1 -3.46035 | gap 1, opp_overlap 571591 571597, overlap 571589 571588 571596 ATCTTTTAGATAAAA CAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTG TCGTTTTTATTTCAT TERM 630 571618 - 571597 - R 89 -6.7 -5.58522 | gap 1, opp_overlap 571596 571591 571589 571588, overlap 571591 TAGATAAAACAAAAA CCTC-AAAGT ATT ACTTTTGAGG CTTTTGTCGTTTTTA TERM 631 571950 - 571981 + r 81 -6 -4.87665 | overlap 571951 TTTGTTTCTTATTTT GCAGGAAATAGATT GTTG GATCTATTTTCTGG TTTTTATAAATAAAA TERM 632 571951 - 571980 + r 79 -9.5 -3.52117 | overlap 571950 TTGTTTCTTATTTTG CAGGAAATAGATT GTTG GATCTATTTTCTG GTTTTTATAAATAAA TERM 633 572085 - 572124 + r 74 -3 -5.38326 | gap 1, opp_overlap 572069 572088 572094, overlap 572086 572088 572093 TATATCTTTTAGATA AAACAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTGTCG TTTTTATTTCATTAA TERM 634 572088 - 572121 + r 79 -9.1 -3.46035 | gap 1, opp_overlap 572088 572094, overlap 572086 572085 572093 ATCTTTTAGATAAAA CAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTG TCGTTTTTATTTCAT TERM 635 572121 - 572088 - R 100 -11.3 -4.52857 | gap 1, opp_overlap 572086 572085 572088 572093, overlap 572094 ATCTTTTAGATAAAA CAAAAACCTC-AAAGT ATT ACTTTTGAGGCTTTTG TCGTTTTTATTTCAT TERM 636 572115 - 572094 - R 89 -6.7 -5.58522 | gap 1, opp_overlap 572093 572088 572086 572085, overlap 572088 TAGATAAAACAAAAA CCTC-AAAGT ATT ACTTTTGAGG CTTTTGTCGTTTTTA VF_0533 573855 - 572179 - | long-chain-fatty-acid--CoA ligase TERM 637 574024 - 574004 - R 85 -6.8 -5.29782 | opp_overlap 574004 GATAGGTATAAAAAA GCCTGCAT ATAAA AAGCAGGC TTATTTGAATAGAAT mutS 576629 - 574065 - | DNA mismatch repair protein cinA 576737 - 577234 + | CinA-related protein TERM 638 577301 - 577291 - f 93 -5.4 -6.04378 | AAATTAGAAAAAAAA TAGC AAA GCTA TAGACACTGTACAAA recA 577375 - 578421 + | recombinase A TERM 639 578452 - 578471 + F 93 -7.9 -5.4251 | opp_overlap 578452 TAATATTTTTTAAAA GCCAAAC CTTAGT GTTTGGC TTTTTTATATCTAGC TERM 640 578471 - 578452 - f 78 -7.9 -4.11371 | opp_overlap 578452 TAATATTTTTTAAAA GCCAAAC CTTAGT GTTTGGC TTTTTTATATCTAGC TERM 641 578631 - 578603 - f 77 -5.4 -5.00884 | gap 1, opp_overlap 578605 ATTCTGTCTAAAAAA CACTGCTTGTCCT AATG AGTACAAG-AGTG AGTTAAACTACGATT alaS 578664 - 581243 + | alanyl-tRNA synthetase TERM 642 581290 - 581319 + G 100 -14.5 -3.55071 | gap 1, opp_overlap 581292, overlap 581293 AGTATGGTGGTACAT CAG-TTGGATCCGT TGA ACGGATCCAATCTG TTTCCGAACGTATCA TERM 643 581316 - 581292 - g 79 -11.5 -2.62396 | opp_overlap 581290 581293 TATGGTGGTACATCA GTTGGATCCGT TGA ACGGATCCAAT CTGTTTCCGAACGTA TERM 644 581293 - 581315 + G 100 -15 -3.24411 | opp_overlap 581292, overlap 581290 ATGGTGGTACATCAG TTGGATCCGT TGA ACGGATCCAA TCTGTTTCCGAACGT TERM 645 581343 - 581373 + G 79 -9 -3.89346 | opp_overlap 581343 CGTATCATATCAACA CTGCAGCAAGGGCA TGA TGTCGTTGTTGCGG TTTCTGCCATGGCAG VF_0537 581256 - 582425 + | aspartate kinase csrA 582507 - 582704 + | carbon storage regulator TERM 646 582712 - 582743 + F 76 -3.8 -5.30339 | gap 1, opp_overlap 582718 582720, overlap 582716 582720 ACTTTTAATTTCGTA TGAATATAGGCTGGC ATT GTCAGCCT-TGTTTG TTTTTGTCTTTTACT TERM 647 582716 - 582739 + F 76 -4.6 -5.0707 | gap 1, opp_overlap 582718 582720, overlap 582712 582720 TTAATTTCGTATGAA TATAGGCTGGC ATT GTCAGCCT-TG TTTGTTTTTGTCTTT TERM 648 582720 - 582736 + F 100 -10.1 -4.56117 | opp_overlap 582720 582718, overlap 582716 582712 TTTCGTATGAATATA GGCTGGC ATT GTCAGCC TTGTTTGTTTTTGTC TERM 649 584601 - 584634 + F 100 -16.3 -2.87931 | opp_overlap 584609, overlap 584609 TGGCGCACCATTCTT TAAAAGAACCCGATC ATTT GATCGGGTTTTTTTA TGTCTGAAAGATAAA TERM 650 584609 - 584626 + F 100 -11.3 -5.76633 | opp_overlap 584609, overlap 584601 CATTCTTTAAAAGAA CCCGATC ATTT GATCGGG TTTTTTTATGTCTGA TERM 651 584626 - 584609 - f 100 -11.3 -4.17762 | opp_overlap 584601 584609 CATTCTTTAAAAGAA CCCGATC ATTT GATCGGG TTTTTTTATGTCTGA oadC 584919 - 585170 + | oxaloacetate decarboxylase, gamma subunit oadA 585207 - 586994 + | pyruvate carboxylase subunit B oadB 587010 - 588140 + | oxaloacetate decarboxylase beta subunit TERM 652 588166 - 588181 + F 100 -8.2 -5.86976 | opp_overlap 588166 588161 AACCTAACAATAAAA GGGTGC TGAT GCGCCC TTTTTTATTTTATGC TERM 653 588181 - 588166 - f 81 -6 -4.91987 | opp_overlap 588166, overlap 588161 AACCTAACAATAAAA GGGTGC TGAT GCGCCC TTTTTTATTTTATGC yqaA 588174 - 588668 + | inner membrane protein TERM 654 590933 - 590917 - g 73 -2.4 -5.243 | TAAACGAGCAAAAAA TTTATT TGATC AATAAA CCAAATGCACCTCAA TERM 655 591127 - 591138 + G 73 -2.2 -5.24129 | TGGGCAATAAAGAGA TCGG AATG TCGA TTTTTTATGCGCAAG VF_0542 588678 - 591530 + | M16 family peptidase TERM 656 591572 - 591544 - f 76 -7.5 -3.99444 | opp_overlap 591546, overlap 591546 AATAACACTTAGAAA GACGGCAATAAGT AGT ATTTATTGCCGTT TTTTCGTATCCAACT TERM 657 591570 - 591546 - f 82 -10.1 -3.57639 | opp_overlap 591546, overlap 591544 TAACACTTAGAAAGA CGGCAATAAGT AGT ATTTATTGCCG TTTTTTCGTATCCAA TERM 658 591546 - 591570 + F 100 -12.3 -5.21709 | opp_overlap 591546 591544 TAACACTTAGAAAGA CGGCAATAAGT AGT ATTTATTGCCG TTTTTTCGTATCCAA TERM 659 592843 - 592833 - g 79 -5.4 -4.93365 | GGTTAGAACTAAAAA TTGG TTG CCAA GGTGAACGATTAACT gshA 591662 - 593227 + | glutamate--cysteine ligase TERM 660 593248 - 593274 + F 100 -10.2 -5.75342 | ACGAAGAAATATCTA GCACTGTTATTC TAT GGGTAGCAGTGC TTTTTTTTGAGAAAA VF_0544 593294 - 593893 + | putative lipoprotein TERM 661 594368 - 594350 - g 71 -9.6 -2.84708 | overlap 594349 TGAAGCAAAAGCAAT CGCAAGCA CAG TGCTTGCA TCAGGTATCAGCGTA luxS 593925 - 594443 + | S-ribosylhomocysteinase TERM 662 594468 - 594484 + T 100 -10.8 -5.47821 | opp_overlap 594468 TAATTTGAAAAAAAA GCCCGC ATTTA GCGGGC TTTTTTTAGCTGAAT TERM 663 594484 - 594468 - T 100 -10.8 -5.81032 | opp_overlap 594468 TAATTTGAAAAAAAA GCCCGC ATTTA GCGGGC TTTTTTTAGCTGAAT TERM 664 594493 - 594505 + T 71 -7.7 -3.61764 | AGCGGGCTTTTTTTA GCTGA ATA TCAGC TTTAACCATTGATAG corB 595839 - 594535 - | magnesium and cobalt efflux protein CorB VF_0547 596737 - 595943 - | CcsA-related protein TERM 665 597134 - 597118 - g 71 -3.7 -4.94222 | overlap 597120 AAGAATTCATAAAAA TTGTTCA AGC TGAACTA GAAGCAGTTATGGGG ffh 596889 - 598262 + | Signal recognition particle (SRP) component with 4.5S RNA (ffs) TERM 666 598463 - 598473 + F 79 -4 -5.40474 | overlap 598460 598459 TTTTGGCACGAGGGC TCAA AAA TTGA TTTTTTTGGGCCAAT rpsP 598520 - 598768 + | 30S ribosomal protein S16 rimM 598796 - 599323 + | 16S rRNA-processing protein TERM 667 599388 - 599398 + G 73 -6.8 -4.14739 | CCTGAAATGTTCCGT TCGG TTA CCGA TTTTGGGGTAACTAG trmD 599346 - 600095 + | tRNA (guanine-N(1)-)-methyltransferase rplS 600137 - 600490 + | 50S ribosomal protein L19 TERM 668 600545 - 600524 - f 100 -15.9 -3.16055 | opp_overlap 600524 CAAATGTGCTATGAA GGTGCGCTG TTAT CAGCGCACC TTTTTTTATATCTAA TERM 669 600524 - 600545 + F 100 -15.9 -5.76633 | opp_overlap 600524 CAAATGTGCTATGAA GGTGCGCTG TTAT CAGCGCACC TTTTTTTATATCTAA aroF 600707 - 601780 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 670 601989 - 601979 - g 100 -8.2 -5.76949 | opp_overlap 601978 GAGGCTGAAAAAAAA GGCG TAC CGCC CTCATTAATTGAAGA TERM 671 602080 - 602047 - g 73 -6.9 -4.22652 | overlap 602050 TTATAGCAGTGAAAA TGATTCTGGTTTTAA GTGT TTAAAACCAGAGTTA AGGCCGATCGTTGTT TERM 672 602405 - 602417 + G 75 -7.7 -4.0847 | CCTGATGTTCCAAGC CTTGC AAA GCAAG TTATTGTTATGTGTG tyrA 601787 - 602920 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 673 602942 - 602978 + T 81 -9.6 -3.34522 | opp_overlap 602950, overlap 602950 TAAGAAGGCATAGAA TGTAAAAAGGGTGAGC CATGA GCTAACCCTTTTTGTA TTGATTAAACGGTGT TERM 674 602950 - 602970 + T 84 -6.8 -5.1485 | opp_overlap 602950, overlap 602942 CATAGAATGTAAAAA GGGTGAGC CATGA GCTAACCC TTTTTGTATTGATTA TERM 675 602970 - 602950 - T 83 -7.5 -4.79756 | opp_overlap 602950 602942 CATAGAATGTAAAAA GGGTGAGCC ATG AGCTAACCC TTTTTGTATTGATTA VF_0555 604007 - 602994 - | TagE-like protein VF_0556 604394 - 604032 - | hypothetical protein TERM 676 604478 - 604461 - R 100 -9.8 -5.07486 | opp_overlap 604461 604460 TATGTCCAATAAAAA GGCCGC TTGAGT GCGGCC CTTATGATAAACATC TERM 677 604461 - 604478 + r 75 -9.8 -2.64416 | opp_overlap 604461, overlap 604460 TATGTCCAATAAAAA GGCCGC TTGAGT GCGGCC CTTATGATAAACATC yjjK 606176 - 604509 - | putative ABC transporter ATP-binding protein slt 606364 - 608298 + | lytic murein transglycosylase, soluble TERM 678 608377 - 608342 - f 71 -5.5 -4.46233 | opp_overlap 608351, overlap 608344 608348 608351 TTAAGCTTAAATAAA TATAAAGTAGGGGAC TTAATT GTCCCCTTTTTTACA ATTGTATGAGGATAC TERM 679 608368 - 608351 - f 70 -8.4 -3.17739 | opp_overlap 608351, overlap 608348 608344 608342 AATAAATATAAAGTA GGGGAC TTAATT GTCCCC TTTTTTACAATTGTA TERM 680 608351 - 608368 + F 90 -8.4 -5.11033 | opp_overlap 608348 608344 608342 608351 AATAAATATAAAGTA GGGGAC TTAATT GTCCCC TTTTTTACAATTGTA TERM 681 608664 - 608638 - g 71 -3.8 -4.95957 | opp_overlap 608638 CAAATGAATTAAAAA GCCATACT GATGAAGAGAA AGTATGGC TTATGGATTTATTAG trpR 608394 - 608720 + | Trp operon repressor yjjX 609201 - 608689 - | NTPase pheA 610402 - 609224 - | fused chorismate mutase P/prephenate dehydratase TERM 682 610491 - 610472 - R 100 -13.6 -5.4505 | opp_overlap 610472 TGCGTCAAGAAAAAA CAGCGCTC AAAT GAGCGCTG TTCTTAAGAATCTTA TERM 683 610472 - 610491 + r 100 -13.6 -3.65201 | opp_overlap 610472 TGCGTCAAGAAAAAA CAGCGCTC AAAT GAGCGCTG TTCTTAAGAATCTTA raiA 610870 - 610517 - | stationary phase translation inhibitor and ribosome stability factor RaiA (YfiA) TERM 684 610950 - 610937 - R 77 -5.3 -4.89966 | opp_overlap 610937 AGAGTTAAAAATAAA GTGAT CAAG ATCAC TTTTTTGATGTGTTG TERM 685 610937 - 610950 + r 82 -5.3 -5.27399 | opp_overlap 610937 AGAGTTAAAAATAAA GTGAT CAAG ATCAC TTTTTTGATGTGTTG TERM 686 611212 - 611189 - R 100 -11.8 -5.4251 | gap 1, opp_overlap 611189 TCCAGACATAAAAAA GCAGTGCTCGA TTC TCG-GCACTGC TTTTTTGTTTTTATA TERM 687 611189 - 611212 + r 100 -11.8 -5.98675 | gap 1, opp_overlap 611189 TCCAGACATAAAAAA GCAGTGCTCGA TTC TCG-GCACTGC TTTTTTGTTTTTATA yfiO 612034 - 611309 - | lipoprotein component of outer membrane protein assembly complex rluD 612196 - 613170 + | 23S rRNA pseudouridine synthase D TERM 688 613333 - 613367 + G 81 -11.5 -3.07994 | opp_overlap 613330 613329 613333, overlap 613336 ATCGTGAAAAACTGA TTACGTTGGGGCAGT TACCT ACTGCACCAACGTGG TTAAATCAGATTCAC TERM 689 613336 - 613364 + G 90 -13.2 -2.7556 | opp_overlap 613333 613330 613329, overlap 613333 GTGAAAAACTGATTA CGTTGGGGCAGT TACCT ACTGCACCAACG TGGTTAAATCAGATT yfiH 613173 - 613907 + | hypothetical protein clpB 614013 - 616598 + | protein disaggregation chaperone TERM 690 618575 - 618556 - T 72 -9.2 -2.65808 | opp_overlap 618562, overlap 618553 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 691 618657 - 618690 + T 100 -12.1 -4.99134 | overlap 618644 618682 AGTTGAAGTTGTAGA GCTTTAATTAATAAT TCCG ATTATTGATTAAAGC TTTTTGCTTTAAGCT TERM 692 618874 - 618855 - T 73 -8.6 -3.23708 | overlap 618858 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGCTGT TERM 693 619435 - 619423 - T 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 694 620228 - 620212 - T 85 -9.4 -4.08546 | overlap 620224 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 695 622105 - 622093 - T 80 -6.3 -4.71234 | opp_overlap 622056 622093, overlap 622103 AAAGTGAAGACAAAA GTGTT ATG AACAC TTGTCAGCGACGACA TERM 696 622290 - 622274 - T 81 -10.9 -2.63631 | opp_overlap 622273 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 697 622334 - 622357 + T 100 -11.8 -4.81083 | opp_overlap 622334 TGCCATACTTAAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTACTTGCA TERM 698 622357 - 622334 - T 82 -9.6 -3.70773 | opp_overlap 622334 TGCCATACTTAAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTACTTGCA TERM 699 622455 - 622484 + T 100 -18.1 -4.00934 | opp_overlap 622455 622458, overlap 622458 CCCTGCCATACTTAA GAAGGCTCATATC GAAA GATATGAGCCTTC TTTAATATTTGCGGT TERM 700 622484 - 622455 - T 100 -18.1 -3.12351 | opp_overlap 622455 622458, overlap 622458 CCCTGCCATACTTAA GAAGGCTCATATC GAAA GATATGAGCCTTC TTTAATATTTGCGGT TERM 701 622458 - 622481 + T 100 -14 -4.12133 | opp_overlap 622458 622455, overlap 622455 TGCCATACTTAAGAA GGCTCATATC GAAA GATATGAGCC TTCTTTAATATTTGC TERM 702 622481 - 622458 - T 100 -14 -3.70773 | opp_overlap 622455 622458, overlap 622455 TGCCATACTTAAGAA GGCTCATATC GAAA GATATGAGCC TTCTTTAATATTTGC TERM 703 622583 - 622606 + T 100 -11.8 -4.96106 | opp_overlap 622583 GCCATATTTAGAAAA GGCTTGTATC GAAA GGTACAAGCC TTTTTGCTATTTGTG TERM 704 622606 - 622583 - T 100 -9.6 -4.45083 | opp_overlap 622583 GCCATATTTAGAAAA GGCTTGTATC GAAA GGTACAAGCC TTTTTGCTATTTGTG VF_0568 623114 - 622707 - | hypothetical protein VF_0569 624411 - 623104 - | hypothetical protein VF_0570 625055 - 624411 - | hypothetical protein TERM 705 624984 - 625001 + gr 74 -6.3 -4.40003 | overlap 624996 624997 AATAAGAAGCTCAAT CAGAGAG GCGC CTTTCTG TTTATATTTATGAAC VF_0571 625524 - 625009 - | type IV pilin, putative VF_0572 625622 - 626059 + | pili subunit PilA1 VF_0573 627259 - 626108 - | chromate transport protein TERM 706 627210 - 627194 - G 70 -9.4 -2.69596 | overlap 627193 TCTAAAGTAACCAAT GTGGGC AGCTG GCCCAC CAAAACTTACCCAGC VF_0574 627309 - 628301 + | LysR family transcriptional regulator VF_0575 628508 - 628320 - | hypothetical protein TERM 707 628560 - 628533 - R 100 -12.8 -5.5353 | TATATCAATAAAAAA TGGCCAGTAACA ATTA CGCTACTGGCCA TAAGATTACCTTGGT VF_0576 629656 - 628625 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 708 629398 - 629416 + g 71 -3.8 -4.84359 | CAACAAGAACTAATG GCTGTTTA GAT TGAACTGC TTTTTCTGCAAATGC TERM 709 629858 - 629827 - R 82 -8.9 -4.04318 | opp_overlap 629833, overlap 629833 TGTATAGAGTACAAA TAAAAATAGCAGC GATTAG GCTGCTATTTTGA AAGTATTTTTAGCAA TERM 710 629852 - 629833 - R 93 -7.9 -5.40464 | opp_overlap 629833, overlap 629827 GAGTACAAATAAAAA TAGCAGC GATTAG GCTGCTA TTTTGAAAGTATTTT TERM 711 629833 - 629852 + r 78 -7.9 -4.16146 | opp_overlap 629833 629827 GAGTACAAATAAAAA TAGCAGC GATTAG GCTGCTA TTTTGAAAGTATTTT VF_0577 630164 - 629874 - | hypothetical protein TERM 712 630341 - 630305 - H 70 -8.3 -3.16689 | opp_overlap 630314, overlap 630309 AAAAGTTGAGCAAGA TTAATTAAAGGTGTATT TTA AATGCAACTTTAATTAA AAAGGTGAACAGCAT aox 630355 - 630990 + | alternative oxidase 1 TERM 713 631004 - 631021 + T 100 -9.9 -5.10461 | opp_overlap 631007 AGATATTTGTTGAGA TGAGGCT AAAC AGCCTCA TTTTTGTTGAATAAA yeiE 631897 - 631019 - | DNA-binding transcriptional regulator TERM 714 632152 - 632128 - g 75 -7.9 -4.07568 | opp_overlap 632135, overlap 632129 TTGGTGCTGGGAAAA CGCATTACCAT TAA ATGGTTATGCA CAGTGGATCTCAGCG VF_0580 632033 - 633022 + | hypothetical protein TERM 715 634887 - 634905 + G 72 -3.1 -5.1615 | opp_overlap 634884, overlap 634884 AATGGCGAACCACCA TCAACCA ATTAA TGGATGA TTTTTTAGATGTTGA recC 633104 - 636523 + | exonuclease V subunit gamma TERM 716 637750 - 637738 - g 80 -4.7 -5.25735 | overlap 637739 TGAAAAAACCAAAAA GGGCG AAG CGCCA GAACACGCCGTATTT TERM 717 637749 - 637739 - g 70 -8.2 -3.73001 | overlap 637738 GAAAAAACCAAAAAG GGCG AAG CGCC AGAACACGCCGTATT TERM 718 638048 - 638058 + G 79 -6.8 -4.62622 | opp_overlap 638047 CTTTATCAAGATCAG CCAC AAT GTGG TTTATTTATGATTGG TERM 719 639842 - 639832 - g 72 -3.2 -5.05113 | overlap 639835 GCTAGAGAAAGAAAA CTAC GAT GCAG AATGGCTAGAGGTCG recB 636815 - 640441 + | exonuclease V (RecBCD complex), beta subunit recD 640434 - 642452 + | exonuclease V (RecBCD complex), alpha subunit emrE 642663 - 643016 + | DLP12 prophage; multidrug resistance protein TERM 720 643096 - 643065 - T 100 -10.8 -4.33417 | opp_overlap 643067, overlap 643067 TTCAGTCAGAACAAA TAGGCCGCAAAGGG ATTT CCTTCTGCGGCCTT TTTTATAATCCTTTT TERM 721 643094 - 643067 - T 100 -13.4 -3.76888 | opp_overlap 643067, overlap 643065 CAGTCAGAACAAATA GGCCGCAAAGGG ATTT CCTTCTGCGGCC TTTTTTATAATCCTT TERM 722 643067 - 643094 + T 100 -13.4 -5.33785 | opp_overlap 643067 643065 CAGTCAGAACAAATA GGCCGCAAAGGG ATTT CCTTCTGCGGCC TTTTTTATAATCCTT argA 644439 - 643099 - | N-acetylglutamate synthase VF_0586 644592 - 644975 + | hypothetical protein TERM 723 645009 - 645042 + F 72 -6.1 -4.28111 | overlap 645010 ATTTACCTGCTTATT TTCTATTCGAGATAG CCCT TTATCTCGAATAGCC TTTCTTCGTAATGTC TERM 724 645010 - 645041 + F 79 -9.6 -3.16144 | overlap 645009 TTTACCTGCTTATTT TCTATTCGAGATAG CCCT TTATCTCGAATAGC CTTTCTTCGTAATGT mltA 645166 - 646266 + | murein transglycosylase A TERM 725 646311 - 646331 + F 95 -2.5 -6.20267 | TGATCTTCTAAAAAA GAGTGCG TATAAAT CGTGCTC TTTTTTTGTTTTTGA ygdL 646360 - 647169 + | hypothetical protein csdE 647676 - 647251 - | Fe-S metabolism protein TERM 726 647283 - 647316 + g 85 -12.7 -3.17075 | gap 1, opp_overlap 647280 647315, overlap 647284 647289 TCGTTTCAATGATCG C-TTTAAGCCCATTAC CAC GTGATGGGCTTAAATG TTCAATTAACCCCAA TERM 727 647284 - 647314 + g 100 -16.4 -3.14878 | opp_overlap 647280, overlap 647283 647289 CGTTTCAATGATCGC TTTAAGCCCATTAC CAC GTGATGGGCTTAAA TGTTCAATTAACCCC TERM 728 647289 - 647309 + g 83 -11.9 -3.20236 | opp_overlap 647280, overlap 647284 647283 CAATGATCGCTTTAA GCCCATTAC CAC GTGATGGGC TTAAATGTTCAATTA csdA 648932 - 647700 - | cysteine sulfinate desulfinase TERM 729 649017 - 648999 - H 100 -10.3 -5.83822 | TACAGGCAAAAAAAA GCACCGT ATTAA ACGGTGC TAACTAATCTTTTTT TERM 730 649572 - 649558 - g 71 -7.1 -3.95036 | AAGTATTGGAAAGAA GTGCC AAAGG GGCAC TAACTATTAGTTTAC gcvA 649287 - 650195 + | DNA-binding transcriptional activator GcvA ygdD 650188 - 650574 + | inner membrane protein ygdE 650583 - 651662 + | putative RNA 2'-O-ribose methyltransferase TERM 731 651714 - 651742 + T 100 -16.1 -5.4659 | opp_overlap 651714 TTGAGAAATAAAAAA CGCCCGCTGAT GTTGATA ATCAGCGGGCG TTTTTATTTATCTTC TERM 732 651742 - 651714 - T 100 -16.1 -5.72622 | opp_overlap 651714 TTGAGAAATAAAAAA CGCCCGCTGAT GTTGATA ATCAGCGGGCG TTTTTATTTATCTTC xni 652703 - 651924 - | exonuclease IX TERM 733 652759 - 652739 - R 100 -11.9 -6.12458 | opp_overlap 652739 TAAAAAAAGAAAAAA GCCTACGCA TTC TGCATAGGC TTATTATTGTACGTT TERM 734 652739 - 652759 + r 87 -9.7 -4.04491 | opp_overlap 652739 TAAAAAAAGAAAAAA GCCTACGCA TTC TGCATAGGC TTATTATTGTACGTT ygdH 654156 - 652798 - | hypothetical protein TERM 735 654225 - 654209 - R 74 -9.5 -3.00617 | opp_overlap 654202, overlap 654202 654201 TAATAAACTTACACA GCAAAAG AGA CTTTTGC TAGGAAAATTGTAAA VF_0596 655870 - 654308 - | diguanylate cyclase/phosphodiesterase VF_0597 658292 - 656046 - | hypothetical protein TERM 736 657152 - 657167 + g 70 -2.6 -5.01811 | gap 1, overlap 657152 TAAGTTTTGCTTGTA G-AAGAG CCG CTCTTGC TTTTTGCTTTGGTAG TERM 737 658315 - 658349 + r 95 -14.6 -3.1637 | TATCGTTGTGAGGGG ATTTGTCTACAAAGAA ACG TTCTTTGTAGACAAAA TTAATCAAAATGTCT queF 659209 - 658364 - | 7-cyano-7-deazaguanine reductase TERM 738 658878 - 658900 + g 82 -6.4 -4.99947 | TTTACCAATGTCTCT TTTACTTCAT CCC ATGAGGTGAA TTTTGTTTGGTTAAA syd 659314 - 659865 + | SecY interacting protein Syd TERM 739 659890 - 659911 + F 100 -9.5 -5.61881 | opp_overlap 659890 659886 AAATGATTAAATCAA TTCCGGTGT AATT ACATCGGAA TTTTTATTTTTAAAG VF_0600 659947 - 660720 + | hypothetical protein TERM 740 660757 - 660738 - T 100 -9.3 -5.08601 | opp_overlap 660738 TCAGTTGAATAAAAA TGGGAGC CTAGAT GCTCCCA TTTTTTATATCTTGG TERM 741 660738 - 660757 + T 100 -9.3 -5.47431 | opp_overlap 660738 TCAGTTGAATAAAAA TGGGAGC CTAGAT GCTCCCA TTTTTTATATCTTGG yaiI 661211 - 660762 - | hypothetical protein VF_0602 661480 - 661211 - | hypothetical protein TERM 742 661639 - 661671 + H 83 -4.9 -5.55664 | opp_overlap 661632 CGGAATAGGCTTGTG CGAGATCTCTCAC GCAAGAG GTGAGAAATATCG TTTTTTTCATCATAA TERM 743 662206 - 662231 + H 100 -11.9 -5.69262 | opp_overlap 662206 CGAGTAGAGTTATAA CCCCATTAAGC GAGA GCTTGGTGGGG TTTTTCTTTTTCTAG TERM 744 662383 - 662409 + H 100 -13.9 -3.97947 | opp_overlap 662383 662388 TGCTCAATTATGATA TGTAACCGGTT ACTGA AACCGGTTACA TTTCTCCTCAGTGAA TERM 745 662409 - 662383 - H 89 -13.9 -2.86164 | opp_overlap 662383, overlap 662388 TGCTCAATTATGATA TGTAACCGGTT ACTGA AACCGGTTACA TTTCTCCTCAGTGAA TERM 746 662404 - 662388 - H 70 -8 -3.15212 | opp_overlap 662383, overlap 662383 AATTATGATATGTAA CCGGTT ACTGA AACCGG TTACATTTCTCCTCA VF_0603 662465 - 663820 + | PTS system, cellobiose-utilization IIC component TERM 747 664092 - 664078 - g 73 -5.7 -4.62669 | opp_overlap 664085 GAAGTAAATAAGAAA GTCGA AGTCA TCGAC ATGATGGATTACGGC VF_0604 663853 - 664158 + | PTS system, cellobiose-utilization IIB component TERM 748 665011 - 664999 - g 73 -7.7 -3.90843 | opp_overlap 664998, overlap 665007 AAGCAATTACAAGAA GAAGG TAA CCTTC CTGATTGGACGGATG bglA 664198 - 665607 + | 6-phospho-beta-glucosidase A VF_0606 665634 - 666569 + | glucokinase VF_0607 666581 - 666904 + | PTS system, cellobiose-utilization IIA component TERM 749 666915 - 666946 + F 79 -9 -3.8594 | opp_overlap 666910 666909 AATAATAAAGTGTAT TTAGCGTAATAA CTTAGCTA TTATTACGCTAA TTTCATCTACATATT ascG 666974 - 667978 + | LacI family DNA-binding transcriptional repressor TERM 750 667999 - 668016 + F 93 -4.1 -6.01725 | TTTATTTTTAATTAA GCATCGA TTAA TTGGTGC TTTTTTATTTTTATT TERM 751 668078 - 668065 - f 72 -2.5 -5.29885 | AAGCTAAAAATAAAA TATAT ATAA ATATA AAACGTGCGTGATCA VF_0609 668239 - 669516 + | outer membrane protein S TERM 752 669539 - 669581 + T 81 -10.8 -2.67423 | gap 1, overlap 669544 669545 GATATAAAATAAGGG GGGAATTGGGCTAGCAGCA ATACTA TG-TGCTAGCCCAGTTTTC ATTAGTATTCTTCAG TERM 753 669544 - 669576 + T 93 -9.3 -4.49337 | gap 1, overlap 669539 669545 AAAATAAGGGGGGAA TTGGGCTAGCAGCA ATACTA TG-TGCTAGCCCAG TTTTCATTAGTATTC TERM 754 669545 - 669575 + T 83 -10.6 -3.28518 | gap 1, overlap 669544 669539 AAATAAGGGGGGAAT TGGGCTAGCAGCA ATACTA TG-TGCTAGCCCA GTTTTCATTAGTATT VF_0610 669891 - 669583 - | hypothetical protein VF_0611 670932 - 669895 - | hypothetical protein VF_0612 671035 - 671349 + | hypothetical protein truC 671351 - 672130 + | tRNA pseudouridine synthase C TERM 755 672148 - 672172 + T 100 -14.4 -5.47821 | opp_overlap 672148 TTTTATTATAAAAAA GGGAAGACAG TTTAT CTGTCTTCCC TTTTTTTAAATCAAT TERM 756 672172 - 672148 - T 100 -14.4 -5.31275 | opp_overlap 672148 TTTTATTATAAAAAA GGGAAGACAG TTTAT CTGTCTTCCC TTTTTTTAAATCAAT suhB 672999 - 672196 - | inositol monophosphatase TERM 757 673733 - 673708 - g 71 -6.2 -4.13872 | opp_overlap 673708 AGTCAAGCATATAAA GGGGAATCAA AAGAAG TTGATTACCC TTTGAACCATGAACT trmJ 673207 - 673932 + | methyltransferase iscR 674040 - 674546 + | Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor TERM 758 675478 - 675488 + G 70 -5.4 -4.42851 | opp_overlap 675478 CGTGTACCAAGTAAC CTGA ATA TCAG TTTTGAATTTGTTGA iscS 674533 - 675792 + | sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent iscU 675827 - 676210 + | scaffold protein iscA 676335 - 676658 + | Fe-S cluster assembly protein IscA TERM 759 676696 - 676728 + G 85 -9.2 -4.22375 | gap 1, opp_overlap 676706, overlap 676719 ATTTTGAATTATTTG GGCTACCGAACCAGT TTGA ACTGGAT-GGTGGCC TTCTTTCTCTTCAAT hscB 676674 - 677189 + | co-chaperone HscB hscA 677228 - 679078 + | chaperone protein HscA fdx 679081 - 679419 + | ferredoxin, 2Fe-2S type, ISC system iscX 679542 - 679742 + | hypothetical protein pepB 679973 - 681259 + | aminopeptidase B TERM 760 681297 - 681260 - f 75 -7.1 -4.08651 | opp_overlap 681267, overlap 681266 681267 ATCTTAACTAAATAA TTAAAATGAAGATCGAG CTCG CTCGGTCTTCTTTTTTA ACAGCTAATTCCTAT TERM 761 681291 - 681266 - f 74 -6.1 -4.63107 | opp_overlap 681267, overlap 681260 681267 ACTAAATAATTAAAA TGAAGATCGAG CTCG CTCGGTCTTCT TTTTTAACAGCTAAT TERM 762 681267 - 681290 + F 100 -11.8 -5.02074 | opp_overlap 681267 681266 681260 CTAAATAATTAAAAT GAAGATCGAG CTCG CTCGGTCTTC TTTTTTAACAGCTAA TERM 763 681290 - 681267 - f 81 -9.6 -3.36237 | opp_overlap 681267, overlap 681266 681260 CTAAATAATTAAAAT GAAGATCGAG CTCG CTCGGTCTTC TTTTTTAACAGCTAA TERM 764 681425 - 681440 + F 82 -3.2 -5.69793 | overlap 681427 TTATCGAAAAATCCC GTCTTG TTCT CAAGTC TTTTTTCTTTGCTAT ndk 681548 - 681982 + | nucleoside diphosphate kinase TERM 765 682008 - 682036 + F 83 -7.5 -4.69053 | AGCCTAAAACGCTTG CAAGCTCCC TAAAGAATAAC GGGAGCTTG TTTTGTTGAATGCTA yfgB 682216 - 683334 + | hypothetical protein TERM 766 683493 - 683458 - g 79 -8.5 -4.06533 | gap 1, opp_overlap 683460, overlap 683460 683461 GAAATGACCAAAGAA GAG-GTAATTCGAGCT GCTGA AGCTCGAATTACACTT GGATTAAGCTACTTA TERM 767 683490 - 683460 - g 88 -11.3 -3.60925 | opp_overlap 683460, overlap 683458 683461 AATGACCAAAGAAGA GGTAATTCGAGCT GCTGA AGCTCGAATTACA CTTGGATTAAGCTAC TERM 768 683460 - 683491 + G 79 -11.1 -3.18452 | gap 1, opp_overlap 683460 683458 683461 AATGACCAAAGAAGA G-GTAATTCGAGCT GCTGA AGCTCGAATTACAC TTGGATTAAGCTACT TERM 769 683489 - 683461 - g 95 -14.8 -2.75471 | opp_overlap 683460, overlap 683460 683458 ATGACCAAAGAAGAG GTAATTCGAGCT GCTGA AGCTCGAATTAC ACTTGGATTAAGCTA VF_0627 683365 - 683997 + | type IV pilus biogenesis/stability protein TERM 770 684278 - 684306 + G 70 -9.7 -2.51173 | opp_overlap 684289 684291, overlap 684277 684280 684305 AGCAGATCAATTTGA CATGGGTAAAC TAGCCAC GTTTACCCGTG GTTACTACCGTTCAT yfgA 684117 - 685031 + | integral membrane protein ispG 685044 - 686162 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase hisS 686201 - 687469 + | histidyl-tRNA synthetase TERM 771 687646 - 687635 - g 70 -5.8 -4.42806 | TCACTGCGAAAGAAA CAGC TTCT GCTG CCTATGAAAGAGCGC yfgM 687481 - 688092 + | hypothetical protein yfgL 688103 - 689260 + | outer membrane protein assembly complex subunit YfgL TERM 772 689286 - 689313 + F 100 -9.8 -5.16681 | CTATAATTGTGAATT GGCTCCAAGTCC TTTT GGTTTTGGGGCC TTTTATTGTTTTTAG der 689442 - 690944 + | GTP-binding protein EngA TERM 773 691009 - 690979 - f 79 -8.3 -4.05208 | opp_overlap 690984, overlap 690984 ATGTATATTAAATAA TAAAACGCCCATC TAGTT GTTGGGCGTTTTT TTTAGGTAAAAATCA TERM 774 690984 - 691004 + F 100 -8.2 -5.81412 | opp_overlap 690979 690984 TATTAAATAATAAAA CGCCCATC TAGTT GTTGGGCG TTTTTTTTAGGTAAA TERM 775 691004 - 690984 - f 90 -8.2 -5.02606 | opp_overlap 690984, overlap 690979 TATTAAATAATAAAA CGCCCATC TAGTT GTTGGGCG TTTTTTTTAGGTAAA VF_0634 691024 - 691899 + | metal-dependent hydrolase TERM 776 691924 - 691909 - f 74 -3.3 -5.23016 | opp_overlap 691909 691916, overlap 691916 AAATAATCTAAAAAA TGGAA ATTACA TTCCA TGTATATTTCATTCT VF_0635 692217 - 692450 + | hypothetical protein xseA 693792 - 692443 - | exodeoxyribonuclease VII large subunit TERM 777 693124 - 693134 + g 70 -5.4 -4.3255 | ACTTGCAGCAATGGT TCGT GCA ACGA TTTCTTCGTTAAAAC guaB 694001 - 695464 + | inositol-5-monophosphate dehydrogenase guaA 695666 - 697219 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 778 697257 - 697270 + F 100 -9.5 -5.96894 | opp_overlap 697257 ATTTTGTTTATTAAA GCGCC GAAA GGCGC TTTTTTTGTTTCCAT TERM 779 697270 - 697257 - f 81 -9.5 -3.72695 | opp_overlap 697257 ATTTTGTTTATTAAA GCGCC GAAA GGCGC TTTTTTTGTTTCCAT VF_0639 697495 - 699054 + | aminobenzoyl-glutamate transport protein TERM 780 699075 - 699101 + T 100 -13.1 -5.61596 | opp_overlap 699075 ATTAGTAAAAATAAA GCCCTGAGAAT GTTGA GTTCTCAGGGC TTTTTTTATGAGAGT TERM 781 699101 - 699075 - T 100 -12.4 -4.92756 | opp_overlap 699075 ATTAGTAAAAATAAA GCCCTGAGAA TGTTGAG TTCTCAGGGC TTTTTTTATGAGAGT VF_0640 699764 - 699129 - | hypothetical protein TERM 782 699791 - 699817 + r 100 -12.5 -4.48987 | opp_overlap 699791 699788 699793 ATGTTGGTGAAATGA GATGTCACTTA ACGGG TAAGTGACATC TTTTCATTATGACGC TERM 783 699817 - 699791 - R 86 -12.5 -2.90615 | opp_overlap 699791, overlap 699788 699793 ATGTTGGTGAAATGA GATGTCACTTA ACGGG TAAGTGACATC TTTTCATTATGACGC TERM 784 699815 - 699793 - R 74 -9.3 -3.00525 | opp_overlap 699791, overlap 699791 699788 GTTGGTGAAATGAGA TGTCACTTA ACGGG TAAGTGACA TCTTTTCATTATGAC yhaM 701101 - 699824 - | hypothetical protein VF_0642 701507 - 701127 - | endoribonuclease L-PSP, putative TERM 785 701213 - 701227 + g 71 -5 -4.62002 | overlap 701204 AGCGAGCAGGGCAGT CTGTTT TGA AAACGG TTTTGTATACTTCGT TERM 786 702028 - 702038 + G 74 -4 -5.07486 | CCCAGCCATGTATTT GTTT CAA AAAC TTTTTATTAACACTC VF_0643 701804 - 703108 + | serine transporter TERM 787 703166 - 703129 - T 100 -13.8 -3.54755 | gap 1, opp_overlap 703129, overlap 703136 ATTTTCTAAATAACA TA-AAAAAGCCCAGAGA TATCC TCTCTGGGCTTTTTCTA TTTTTGTTGTTATTT TERM 788 703129 - 703166 + T 100 -13.8 -5.40014 | gap 1, opp_overlap 703129 703136 ATTTTCTAAATAACA TA-AAAAAGCCCAGAGA TATCC TCTCTGGGCTTTTTCTA TTTTTGTTGTTATTT TERM 789 703158 - 703136 - T 100 -13.5 -5.57729 | opp_overlap 703129, overlap 703129 AAATAACATAAAAAA GCCCAGAGA TATCC TCTCTGGGC TTTTTCTATTTTTGT yeiG 704018 - 703176 - | esterase TERM 790 704120 - 704108 - R 70 -4.1 -4.64861 | GTGCTTTAAAATAAA GAATG AAA CACTC AGTAAGATTATCTAT TERM 791 704227 - 704203 - R 81 -9.3 -3.71148 | opp_overlap 704200 704205, overlap 704197 704205 AGATCAAAAGTAGAA TAGGGGCTAGA GTA TCTAACCCCTT ACTTTTACTTATTTA TERM 792 704225 - 704205 - R 90 -11.9 -3.42359 | opp_overlap 704205 704200, overlap 704203 704197 ATCAAAAGTAGAATA GGGGCTAGA GTA TCTAACCCC TTACTTTTACTTATT TERM 793 704205 - 704225 + r 83 -9.7 -3.78229 | opp_overlap 704203 704197 704205, overlap 704200 ATCAAAAGTAGAATA GGGGCTAGA GTA TCTAACCCC TTACTTTTACTTATT frmA 705384 - 704236 - | alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase TERM 794 705417 - 705437 + H 80 -2.6 -5.73978 | overlap 705418 ATATTCGGATGAGCA GTCAACTA AAGCG TAGTTGAG TTTTTTATTTCTGCT VF_2594 705663 - 706037 + | hypothetical protein VF_0646 706098 - 706697 + | periplasmic protein disulfide isomerase, DsbA-like protein TERM 795 706728 - 706758 + T 74 -9.1 -3.08471 | opp_overlap 706734, overlap 706734 ACAAACTTGAGATAC AAAAAAGCCCTCG CAGAT TGAGGGCTTTTTA TTGCATGACATTATG TERM 796 706734 - 706752 + T 90 -8.1 -5.10461 | opp_overlap 706734, overlap 706728 TTGAGATACAAAAAA GCCCTCG CAGAT TGAGGGC TTTTTATTGCATGAC TERM 797 706752 - 706734 - T 93 -7.4 -5.4251 | opp_overlap 706728 706734 TTGAGATACAAAAAA GCCCTC GCAGATT GAGGGC TTTTTATTGCATGAC VF_0647 708046 - 706769 - | proton/sodium-glutamate symport protein TERM 798 708166 - 708134 - R 100 -11.5 -5.31877 | opp_overlap 708138, overlap 708138 ATGCAGTATAAAAAA TAAAGTCCGTTAAAT TAA ATCTAACGGACTTTG ATATTAAGTGAATTA TERM 799 708162 - 708138 - R 100 -12.3 -5.1471 | opp_overlap 708138, overlap 708134 AGTATAAAAAATAAA GTCCGTTAAAT TAA ATCTAACGGAC TTTGATATTAAGTGA TERM 800 708138 - 708162 + r 87 -10.1 -3.93782 | opp_overlap 708138 708134 AGTATAAAAAATAAA GTCCGTTAAAT TAA ATCTAACGGAC TTTGATATTAAGTGA VF_0648 709393 - 708245 - | glutathione-dependent formaldehyde dehydrogenase TERM 801 709426 - 709446 + H 80 -2.6 -5.73978 | overlap 709427 ATATTCGGATGAGCA GTCAACTA AAGCG TAGTTGAG TTTTTTATTTCTGCT TERM 802 710266 - 710277 + G 76 -4.4 -5.0916 | AGGGTTAGGTATTGT TCAG CTAC CTGA TTTTTATGTTCAAGA yafC 709568 - 710440 + | LysR family DNA-binding transcriptional regulator VF_0650 710441 - 710956 + | tRNA-specific adenosine deaminase TERM 803 710998 - 710977 - T 93 -8.7 -4.70266 | opp_overlap 710977 AATAGGATCTAAAAA GGCAAGCCA TTAT TGGTTTGCC TTTTTCTTTTGTATG TERM 804 710977 - 710998 + T 100 -10.9 -5.58522 | opp_overlap 710977 AATAGGATCTAAAAA GGCAAGCCA TTAT TGGTTTGCC TTTTTCTTTTGTATG TERM 805 711229 - 711202 - T 79 -4.2 -5.24551 | TTAAACGAATAAAAA GCGCGTTT ATTGTATTTGTA AAACGCGC ATAAAAATAGATGAT VF_0651 712805 - 711318 - | amino-acid ABC transporter binding protein TERM 806 715034 - 715024 - g 81 -6.8 -4.66163 | ACCGTGACGCAAAAA CGCT AAA AGCG AACAACCCAGCGATT purL 713169 - 717080 + | phosphoribosylformylglycinamidine synthase TERM 807 717251 - 717274 + F 100 -9.6 -5.80364 | opp_overlap 717246 717251 TCTTTTCAAATAAAA CCGTTGAAGT TTAG GCTTCAGCGG TTTTTTTGTTAGAAT TERM 808 717274 - 717251 - f 83 -6.7 -4.86731 | opp_overlap 717251, overlap 717246 TCTTTTCAAATAAAA CCGTTGAAG TTTAGG CTTCAGCGG TTTTTTTGTTAGAAT VF_0653 717321 - 717830 + | 23S rRNA methyltransferase VF_0654 717999 - 718319 + | hypothetical protein TERM 809 718329 - 718379 + T 89 -8.6 -4.39877 | gap 1, opp_overlap 718335 718339 718346, overlap 718335 718339 718346 GAGTAATCTTCACAA TAGAATGAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC-TACTA TTTATTGATTATTCA TERM 810 718374 - 718335 - T 81 -10.9 -2.84745 | opp_overlap 718329 718335 718339 718346, overlap 718339 718346 TCTTCACAATAGAAT GAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC TACTATTTATTGATT TERM 811 718335 - 718374 + T 88 -13.1 -2.96234 | opp_overlap 718335 718339 718346, overlap 718329 718339 718346 TCTTCACAATAGAAT GAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC TACTATTTATTGATT TERM 812 718370 - 718339 - T 100 -10.3 -4.09827 | opp_overlap 718335 718329 718339 718346, overlap 718335 718346 CACAATAGAATGAAA TAAAAAAGGCGCT AATTAA AGCGCCTTTTTTG TGTCTACTATTTATT TERM 813 718339 - 718370 + T 87 -12.5 -3.05294 | opp_overlap 718339 718335 718346, overlap 718335 718329 718346 CACAATAGAATGAAA TAAAAAAGGCGCT AATTAA AGCGCCTTTTTTG TGTCTACTATTTATT TERM 814 718346 - 718363 + T 93 -8.4 -5.43414 | opp_overlap 718346 718339 718335, overlap 718339 718335 718329 GAATGAAATAAAAAA GGCGCT AATTAA AGCGCC TTTTTTGTGTCTACT TERM 815 718363 - 718346 - T 93 -8.4 -5.72053 | opp_overlap 718339 718335 718329 718346, overlap 718339 718335 GAATGAAATAAAAAA GGCGCT AATTAA AGCGCC TTTTTTGTGTCTACT chiA 720921 - 718381 - | endochitinase VF_0656 721174 - 721659 + | transcription elongation factor TERM 816 721678 - 721693 + T 85 -9 -4.25676 | opp_overlap 721678 TTTGGATCAAAAAAA GAGAGG CGAA CCTCTC TTTTAAAATTTCATT TERM 817 721693 - 721678 - T 95 -9 -5.52384 | opp_overlap 721678 TTTGGATCAAAAAAA GAGAGG CGAA CCTCTC TTTTAAAATTTCATT VF_0657 722815 - 721721 - | succinylglutamate desuccinylase/aspartoacylase family protein TERM 818 722060 - 722074 + gT 73 -5.7 -4.56093 | opp_overlap 722059 722060, overlap 722067 TGATTTAGCTATAAC CGCTT CAGGT AAGCG TTTTCTGCTTGCCTT TERM 819 722517 - 722536 + gT 74 -5 -4.67942 | opp_overlap 722515 722517 AAGACGTTCACAATA GGCACA GCAATCAG TGTGCC TTTTAGTTTCTTCGG TERM 820 722635 - 722650 + gT 77 -10.4 -2.54634 | opp_overlap 722634, overlap 722634 TTACCATCAGGATAG GGCCAG CATG CTGGCC ATTAATGATCTCAAC TERM 821 722757 - 722768 + gT 89 -3 -5.82388 | opp_overlap 722757 GAGTGCGTTAATAAT TCAA ACGC TTGA TTTTTTTTAGCCTTT rimK 723680 - 722775 - | ribosomal protein S6 modification protein TERM 822 723282 - 723270 - GR 72 -9.1 -2.64416 | overlap 723269 GAGCTTGATCACAAC TGGCG CAC CGCCA ACCATGTCTAATAAA rimK2 724120 - 723680 - | ribosomal protein S6 modification protein VF_0660 724612 - 725955 + | sodium-dependent transporter TERM 823 726030 - 726008 - T 100 -9.2 -5.9362 | opp_overlap 726008 TAAAATATAAAAAAA GCCAGCAT GTTAATT ATGCTGGC TTTTTACTTTTGATT TERM 824 726008 - 726030 + T 100 -9.9 -5.13016 | opp_overlap 726008 TAAAATATAAAAAAA GCCAGCATG TTAAT TATGCTGGC TTTTTACTTTTGATT VF_0661 726243 - 726055 - | hypothetical protein VF_0662 726461 - 726243 - | hypothetical protein TERM 825 726521 - 726550 + r 73 -8 -3.53224 | opp_overlap 726521 CATAGATCAAAAAAA GCTGAAAAACCT AGGGGG AAGTTTTTCAGC TTTAGAGCAAAGATA TERM 826 726550 - 726521 - R 100 -10.2 -5.60864 | opp_overlap 726521 CATAGATCAAAAAAA GCTGAAAAACCT AGGGGG AAGTTTTTCAGC TTTAGAGCAAAGATA nanA 727469 - 726576 - | N-acetylneuraminate lyase TERM 827 726884 - 726841 - G 71 -9.6 -2.85712 | overlap 726838 GCATAGTTATAAGTA CTACCTACCGCACTTTTTGC GCCA ACAGCAAGTGCGCCAGGTAG GTGCTCATCAACACC TERM 828 727928 - 727949 + G 71 -3.7 -4.84761 | CACAGATTGTAAATG CGGGTGATG CAAC CATTATTCG TTTTTGTCGAACTCT rpiR 727762 - 728640 + | DNA-binding transcriptional repressor TERM 829 728697 - 728659 - T 78 -6.9 -4.4009 | gap 1, opp_overlap 728663 728665, overlap 728665 TTTGACTGTATAAAA TTATAAGGCCGTGAATAT ACAC ATATTCACGGCCT-ATTT TTTATTTCTGATAAA TERM 830 728663 - 728694 + T 100 -14.6 -5.73978 | opp_overlap 728659 728665, overlap 728665 ACTGTATAAAATTAT AAGGCCGTGAATAT ACAC ATATTCACGGCCTA TTTTTTATTTCTGAT TERM 831 728665 - 728692 + T 100 -17.2 -4.49311 | opp_overlap 728659 728665, overlap 728663 TGTATAAAATTATAA GGCCGTGAATAT ACAC ATATTCACGGCC TATTTTTTATTTCTG TERM 832 728692 - 728665 - T 100 -17.2 -3.72405 | opp_overlap 728665 728663, overlap 728659 TGTATAAAATTATAA GGCCGTGAATAT ACAC ATATTCACGGCC TATTTTTTATTTCTG nagA2 729859 - 728699 - | N-acetylglucosamine-6-phosphate deacetylase nanE 730087 - 730824 + | N-acetylmannosamine-6-phosphate 2-epimerase nanK 730821 - 731696 + | N-acetylmannosamine kinase TERM 833 732588 - 732572 - g 73 -2.3 -5.23316 | opp_overlap 732579 GATGAGACTAAAAAA GCATT GATCACT AATGC GAAATTAGTGGCTTG nanT 731756 - 733273 + | N-acetylneuraminate transporter, sodium-glucose/galactose cotransporter TERM 834 733289 - 733312 + F 93 -10.4 -4.08394 | overlap 733296 TTGATAATTGAGTTT GAGCCTTTGT TTTT ATAAAGGCTC TTTTAAGGACAGTGT yhcH 733329 - 733799 + | hypothetical protein TERM 835 733816 - 733857 + T 100 -11.2 -4.45253 | opp_overlap 733816 TAATTGAAAATAAAA GCCCTGATACGTACTTA-GT TATG GCATAAGTA-GTATCAGGGC TTTGTCTTATTTTAG TERM 836 733857 - 733816 - T 100 -11.2 -5.13343 | gap 1, opp_overlap 733816 TAATTGAAAATAAAA GCCCTGATACGTACTTA GTTATGGCA TAAGTA-GTATCAGGGC TTTGTCTTATTTTAG ureG 734538 - 733918 - | urease accessory protein UreG ureF 735213 - 734548 - | urease accessory protein UreF ureE 735716 - 735225 - | urease accessory protein UreE ureC 737481 - 735778 - | urease subunit alpha ureB 737837 - 737481 - | urea amidohydrolase, beta subunit ureA 738150 - 737848 - | urea amidohydrolase, gamma subunit TERM 837 738109 - 738126 + g 74 -4.1 -5.13344 | TATCATGCCAGCAGA GGCAAGC AGCA GTTTGTC TTTTTCTCTTGGTGT ureD 739030 - 738167 - | urease accessory protein UreD TERM 838 738449 - 738463 + g 70 -3.5 -4.9448 | CATGGGATAGTGCCT CATGC CTGCT GCGTG TTTTATTTCATCAAT TERM 839 738632 - 738642 + g 79 -5.4 -4.86621 | opp_overlap 738631 CGCATTCTTATGAAG CTCA ACT TGAG TTTTTAATTGAGCCT VF_0677 740038 - 739400 - | putative dipeptide ABC transporter VF_0678 740741 - 739989 - | oligopeptide transport ATP-binding protein OppD VF_0679 741495 - 740731 - | oligopeptide transport system permease protein OppC VF_0680 742509 - 741514 - | oligopeptide transport system permease protein OppB VF_0681 744158 - 742488 - | oligopeptide-binding protein OppA TERM 840 744489 - 744468 - R 100 -11.7 -5.4492 | opp_overlap 744468 TATAGATATAAAAAA GGCTAAGTA AATT TACTTAGCC TTTGGTATTTAATAC TERM 841 744468 - 744489 + r 93 -11.7 -4.02719 | opp_overlap 744468 TATAGATATAAAAAA GGCTAAGTA AATT TACTTAGCC TTTGGTATTTAATAC proS 746241 - 744514 - | prolyl-tRNA synthetase TERM 842 745387 - 745400 + g 72 -3.1 -5.08824 | opp_overlap 745387 745375 AGACGCTTTAACAAA CAGTG TTTT TACTG TTTTTTCAATCGCAA TERM 843 745812 - 745793 - G 76 -7.2 -4.15565 | gap 1, opp_overlap 745804 CGCATTACGCCAAAA CGTGGACGA CGT TCGTC-ACG GAATTTAGTTTGAAT yaeB 747091 - 746378 - | hypothetical protein TERM 844 747118 - 747139 + r 100 -10.2 -4.40358 | opp_overlap 747118 TCAGGCATTAAAAAA GGTTGACG CTCTCA CGTCAACC TTTTGTGGAATAACT TERM 845 747139 - 747118 - R 100 -10.9 -5.1675 | opp_overlap 747118 TCAGGCATTAAAAAA GGTTGACGC TCTC ACGTCAACC TTTTGTGGAATAACT metQ 747980 - 747171 - | DL-methionine transporter substrate-binding subunit metI 748696 - 748019 - | DL-methionine transporter subunit TERM 846 748243 - 748264 + g 73 -5.9 -4.52703 | AGTTTAAAATAGTTG GTAGTGCTT CTGG AAGCAGTAC TTTTGTAATGATTTG metN 749789 - 748686 - | DL-methionine transporter ATP-binding subunit TERM 847 749775 - 749788 + g 80 -2.4 -5.63645 | opp_overlap 749775 AAAGGTTACAAAACC TGAG CAATCT CTCA TTTTTTATGTTTTAC gmhB 749943 - 750494 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 848 750525 - 750548 + F 100 -9.6 -5.80248 | opp_overlap 750525 AGAATATAAATGAAA CGCCTATAGA GAAA TCTGTGGGCG TTTTTTTATGTGTTA VF_2595 750710 - 750877 + | hypothetical protein yejB 751172 - 752200 + | oligopeptide transporter subunit TERM 849 752608 - 752624 + G 71 -9.5 -2.77113 | opp_overlap 752605, overlap 752607 ACCGATACCATAGGT CGAGATA TTG TATCTCG CTTGGTTTATGGCTT yejE 752203 - 753255 + | oligopeptide transporter subunit TERM 850 754313 - 754294 - g 83 -6.4 -5.07275 | overlap 754308 GGATACATACAAAAA GCTTGGGT ATAT AACCAAGC TGCGGTTGGTGCAGG VF_0690 753361 - 755202 + | oligopeptide-binding protein OppA TERM 851 755259 - 755236 - f 93 -9.6 -4.26202 | opp_overlap 755241, overlap 755238 ATAGCCAGTAATAAA GACTAGGCGA GGGA TCGCCTAGTG TAAATAATAATAAAA TERM 852 755257 - 755238 - f 91 -12.2 -3.72775 | opp_overlap 755241, overlap 755236 AGCCAGTAATAAAGA CTAGGCGA GGGA TCGCCTAG TGTAAATAATAATAA TERM 853 755911 - 755899 - g 75 -2.7 -5.28481 | overlap 755891 755900 GAGTTAATGAAAAAA CTTCA AGA TGAAA CGGGTATGTCGATCA VF_0691 755290 - 756294 + | oligopeptide transport ATP-binding protein OppD VF_0692 756291 - 757259 + | oligopeptide transport ATP-binding protein OppF VF_0693 757337 - 757666 + | putative lipoprotein TERM 854 757720 - 757745 + T 76 -7.6 -4.04188 | opp_overlap 757720 TAGATTAGATAAAAA TGCCCATACA TTCATT TGCATGGGCA TTATTGTATTTAGCT TERM 855 757745 - 757720 - T 100 -9.8 -5.02502 | opp_overlap 757720 TAGATTAGATAAAAA TGCCCATACA TTCATT TGCATGGGCA TTATTGTATTTAGCT VF_0694 758368 - 757760 - | hypothetical protein glyA 758768 - 760018 + | serine hydroxymethyltransferase TERM 856 760066 - 760044 - f 87 -10.6 -3.77484 | opp_overlap 760044, overlap 760037 TATTAAAATGTTAAA GGCTAGCC TGTAATG GGCTAGCC TTTTTTATTGATAGT TERM 857 760044 - 760066 + F 100 -12 -5.52023 | opp_overlap 760044 760037 TATTAAAATGTTAAA GGCTAGCCTG TAA TGGGCTAGCC TTTTTTATTGATAGT TERM 858 760078 - 760089 + F 71 -3 -5.13354 | AGCCTTTTTTATTGA TAGT TTTA ACTA TTTCTTTTTTATACG TERM 859 760416 - 760398 - g 77 -6 -4.52349 | opp_overlap 760397 AGAAATAAATATAAA TGGAAATG GCA CAGTTCCA GATATTGGTGGTGAT TERM 860 762661 - 762692 + G 71 -9.5 -2.77523 | overlap 762659 TATGTTCTTGAAGGC TTAGCGTTCGAAG CAAATA CTACGGACGCTAA TGGTATTCCTGAAAA acfD 760321 - 765030 + | accessory colonization factor AcfD-like protein, inner membrane lipoprotein TERM 861 765079 - 765043 - T 100 -15.9 -4.43877 | opp_overlap 765048, overlap 765016 765048 TAATGTTTAAATAAA CTAAAGCCCCCGAACCA TCA CGGTTCGGGGGCTTTTT ATTGTCAGCTATTTA TERM 862 765074 - 765048 - T 100 -20.2 -4.27211 | opp_overlap 765048, overlap 765043 TTTAAATAAACTAAA GCCCCCGAACCA TCA CGGTTCGGGGGC TTTTTATTGTCAGCT TERM 863 765048 - 765074 + T 100 -19.5 -5.19328 | opp_overlap 765048 765043 TTTAAATAAACTAAA GCCCCCGAACC ATCAC GGTTCGGGGGC TTTTTATTGTCAGCT VF_0697 765448 - 765122 - | putative lipoprotein TERM 864 765223 - 765249 + g 91 -6.1 -5.37865 | gap 1, opp_overlap 765223, overlap 765227 CAGTACAGTAATCAA CATT-GATATCA CGCA TGATATCTAATG TTTTTTCATTATTCA VF_0698 767521 - 765533 - | methyl-accepting chemotaxis protein TERM 865 767639 - 767650 + H 77 -5.8 -4.78237 | opp_overlap 767638 AATGAAGGGACATAG GCAG GCAT CTGC TTTTCTTGTACACTA nrdR 767690 - 768139 + | transcriptional regulator NrdR ribD 768141 - 769259 + | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase ribE 769263 - 769919 + | riboflavin synthase subunit alpha TERM 866 770316 - 770304 - g 84 -7.7 -4.68593 | opp_overlap 770303 GGCAGTAGCTAAAAA TGCAG TTG CTGCA GATTTAGTTCAACCA ribB 769960 - 771069 + | 3,4-dihydroxy-2-butanone-4-phosphate synthase TERM 867 771112 - 771079 - f 72 -6.1 -4.27846 | gap 1, opp_overlap 771078 771079, overlap 771073 771081 771083 771084 AAATAAAAGCATAAA TATAT-GGCCCTATTC GAT GAGTAGGGCCTAAATA ATTAGATATTTGTCA TERM 868 771108 - 771081 - f 71 -7.8 -3.70401 | gap 1, opp_overlap 771079 771078, overlap 771073 771079 771083 771084 ATAAAAGCATAAATA TATGGCCCTATTC GAT GAGTAGGGCC-TA AATAATTAGATATTT TERM 869 771107 - 771083 - f 75 -8.5 -3.40925 | opp_overlap 771079 771078, overlap 771073 771081 771079 771084 AAAAGCATAAATATA TGGCCCTATTC GAT GAGTAGGGCCT AAATAATTAGATATT TERM 870 771106 - 771084 - f 84 -12 -2.62928 | opp_overlap 771079 771078, overlap 771083 771081 771079 AAAGCATAAATATAT GGCCCTATTC GAT GAGTAGGGCC TAAATAATTAGATAT TERM 871 771472 - 771488 + G 71 -6.5 -4.27259 | overlap 771473 TTGGGCTCTGTTATT CGTGGTG GCA CACCACA TTTTGACTATGTATG TERM 872 771473 - 771487 + G 75 -10 -3.15632 | overlap 771472 TGGGCTCTGTTATTC GTGGTG GCA CACCAC ATTTTGACTATGTAT ribH 771223 - 771693 + | riboflavin synthase subunit beta nusB 771693 - 772160 + | transcription antitermination protein NusB TERM 873 772192 - 772211 + F 89 -7.1 -5.28176 | opp_overlap 772192 TAATTAAATCGTAAA GGTCAGC CTCGTT GCTGGCC TTTTTTATAACTAAA thiL 772245 - 773243 + | thiamin-monophosphate kinase pgpA 773240 - 773743 + | phosphatidylglycerophosphatase A luxP 773743 - 774861 + | periplasmic AI-2 binding protein LuxP TERM 874 775320 - 775289 - g 90 -4 -5.88471 | gap 1, overlap 775290 775319 TATCATTAAAAAAAA CCTTAATATAAACAC TTG GTAT-TATATTAAGA TGAAAGAGCCTTTAT TERM 875 775335 - 775345 + G 85 -5.4 -5.26875 | opp_overlap 775319 ATGAAAGAGCCTTTA TCAG AAG CTGA TTTTTTAATTAGAAA TERM 876 775472 - 775460 - g 70 -3.4 -4.86939 | GAATAAACTTAAAAA GCTA ACGAA TAGC CAAGATGTATTTATT TERM 877 775843 - 775823 - g 74 -4 -5.15634 | TACGGTATCAAAAAA TGAAACTC GAAGT GAGTATCA AGGTTGTGGTATTTT TERM 878 775945 - 775935 - g 71 -6.8 -3.97602 | GAAGACAGTTATAAA GCTC AAA GAGC GGCAGAAAAATTGGC TERM 879 776118 - 776079 - g 72 -4.4 -4.79826 | AGAGAGCAGCAAAAA CAAGTAAATATTCTCC ATCAAGGG GGAGAGCATTTGCTTG CGGTCTTAAATGATA TERM 880 776633 - 776597 - g 74 -5.1 -4.68451 | opp_overlap 776602, overlap 776599 776602 AAAAATAACAATAAA CAGTACGCTAGGTGTAG GTT CTACATTTAGCGTTCTT ATTCCTGTCTTGATT TERM 881 776631 - 776599 - g 73 -7.7 -3.90009 | opp_overlap 776602, overlap 776597 776602 AAATAACAATAAACA GTACGCTAGGTGTAG GTT CTACATTTAGCGTTC TTATTCCTGTCTTGA TERM 882 776602 - 776628 + G 93 -12.4 -4.02163 | opp_overlap 776599 776597 776602 TAACAATAAACAGTA CGCTAGGTGTAG GTT CTACATTTAGCG TTCTTATTCCTGTCT luxQ 774864 - 777098 + | membrane-bound sensor histidine kinase LuxQ VF_0709 777377 - 777099 - | hypothetical protein VF_0710 777450 - 777800 + | antibiotic biosynthesis monooxygenase domain-containing protein TERM 883 777812 - 777835 + T 100 -9.6 -4.38712 | opp_overlap 777815, overlap 777815 ATAAAATATAAATAA AAATGCCACC AAAC GGTGGCATTG TTTTATGAAACTAAG TERM 884 777832 - 777815 - T 100 -11.3 -5.48623 | opp_overlap 777812 777815 AAATATAAATAAAAA TGCCACC AAAC GGTGGCA TTGTTTTATGAAACT TERM 885 777815 - 777832 + T 100 -11.3 -4.31397 | opp_overlap 777815, overlap 777812 AAATATAAATAAAAA TGCCACC AAAC GGTGGCA TTGTTTTATGAAACT dxs 779746 - 777863 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 886 778878 - 778888 + g 71 -6.8 -4.06778 | GGATCTTTCTCAGCA GGCT CAT AGCC TTTACCTTTTTTCGT ispA 780673 - 779768 - | geranyltranstransferase TERM 887 780555 - 780539 - G 70 -8.1 -3.67597 | opp_overlap 780538 780542, overlap 780542 TTTGCCACCTAACAA CAATGAA TAT TTCATTG CTTCAGTTAGTGGTT xseB 780899 - 780657 - | exodeoxyribonuclease VII small subunit motA1 781178 - 781942 + | flagellar motor protein PomA TERM 888 782446 - 782435 - g 76 -3.6 -5.20216 | GATACGATTAAAAAA GCAC TAGA GCGC GAGATTAGTGAAGGG TERM 889 782679 - 782693 + G 84 -10 -3.80858 | CTAATTGGGACTTAT CTGCTC AAC GAGCAG TTTCCGTTGCTCTTG motB1 781958 - 782887 + | flagellar motor protein MotB TERM 890 782930 - 782953 + F 100 -12.5 -5.83822 | opp_overlap 782930 AAGATAATAATGAAA GGCGAGTTG AATTAG CAACTCGCC TTTTTTTTCGGTATA TERM 891 782953 - 782930 - f 100 -12.5 -4.14175 | opp_overlap 782930 AAGATAATAATGAAA GGCGAGTTG AATTAG CAACTCGCC TTTTTTTTCGGTATA thiI 783047 - 784495 + | thiamine biosynthesis protein ThiI TERM 892 784542 - 784521 - T 100 -14.5 -4.74706 | opp_overlap 784521 TGTAATATTTAAAAA GGGCGTTGA TTAT TCAACGCCC TTTTTTTGTCTATCA TERM 893 784521 - 784542 + T 100 -14.5 -5.76633 | opp_overlap 784521 TGTAATATTTAAAAA GGGCGTTGA TTAT TCAACGCCC TTTTTTTGTCTATCA yajL 785158 - 784568 - | hypothetical protein panE 786060 - 785155 - | 2-dehydropantoate 2-reductase TERM 894 786132 - 786106 - R 100 -15.2 -5.24129 | opp_overlap 786110 GTTTGCTACAAAAAA CAAAGGCGCTCA TAG TGAGCGCCTTAG TAAAATAGGTATTCT TERM 895 786110 - 786128 + r 95 -14.6 -3.16881 | opp_overlap 786106 GCTACAAAAAACAAA GGCGCTCA TAG TGAGCGCC TTAGTAAAATAGGTA yfeN 786929 - 786156 - | hypothetical protein TERM 896 787180 - 787160 - R 100 -9.7 -5.4659 | opp_overlap 787161, overlap 787161 GAACAGAAACAAAAA GGCCTCCTA GAT TAGGAGGCT TTGGTAGCACAGTTG TERM 897 787179 - 787161 - R 95 -13.2 -3.85514 | opp_overlap 787161, overlap 787160 AACAGAAACAAAAAG GCCTCCTA GAT TAGGAGGC TTTGGTAGCACAGTT TERM 898 787161 - 787179 + r 95 -13.2 -3.73072 | opp_overlap 787161 787160 AACAGAAACAAAAAG GCCTCCTA GAT TAGGAGGC TTTGGTAGCACAGTT ampG 788554 - 787211 - | muropeptide transporter AmpG TERM 899 788614 - 788599 - R 84 -6.8 -5.1104 | opp_overlap 788599 788611, overlap 788603 AAATAGATAGAAAAA GCAGCC CGAA AGCTGC TTTAGAGTAGTGCTA VF_0721 789201 - 788641 - | peptidyl-prolyl cis-trans isomerase TERM 900 788931 - 788944 + g 76 -2.3 -5.38321 | CTTCATTTTTGATAG GCCCA TAGC TTGGC TTTTTTATCATATTT VF_0722 789770 - 789201 - | putative lipoprotein rlmG 790933 - 789785 - | methyltransferase small subunit TERM 901 791070 - 791056 - g 74 -4.2 -5.16151 | opp_overlap 791062, overlap 791059 CAAATTGAACAAAAA TTACGC GAA GCGTTA GCGCCTTCTTATCTT bolA 791029 - 791343 + | regulator of penicillin binding proteins and beta lactamase transcription (morphogene) TERM 902 792362 - 792351 - g 78 -3 -5.40072 | opp_overlap 792351 TTCTTCTCAAAAAAA TGTT GAAG AACA TGTATTTGATGGCCC nqrA 791680 - 793077 + | Na(+)-translocating NADH-quinone reductase subunit A nqrB 793081 - 794325 + | Na(+)-translocating NADH-quinone reductase subunit B nqrC 794315 - 795082 + | Na(+)-translocating NADH-quinone reductase subunit C nqrD 795082 - 795714 + | Na(+)-translocating NADH-quinone reductase subunit D nqrE 795722 - 796318 + | sodium-translocating NADH:quinone oxidoreductase, subunit E nqrF 796348 - 797574 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 903 797623 - 797592 - f 72 -5.8 -4.33621 | opp_overlap 797596, overlap 797594 797595 TATCGAAGTAAGAAA TATTGGCTGACTCA GTAC TGAGTCAGCCTTTT TTCGTATTTATGGTC TERM 904 797621 - 797594 - f 75 -8.4 -3.7642 | opp_overlap 797596, overlap 797592 797595 TCGAAGTAAGAAATA TTGGCTGACTCA GTAC TGAGTCAGCCTT TTTTCGTATTTATGG TERM 905 797620 - 797595 - f 84 -11.9 -2.85129 | opp_overlap 797596, overlap 797594 797592 CGAAGTAAGAAATAT TGGCTGACTCA GTAC TGAGTCAGCCT TTTTTCGTATTTATG TERM 906 797596 - 797619 + F 100 -15.4 -5.34055 | opp_overlap 797595 797594 797592 GAAGTAAGAAATATT GGCTGACTCA GTAC TGAGTCAGCC TTTTTTCGTATTTAT apbE 797732 - 798766 + | thiamine biosynthesis lipoprotein VF_0733 798778 - 799011 + | putative periplasmic protein TERM 907 799059 - 799039 - f 82 -9.7 -3.5764 | opp_overlap 799039 AATTCCATTTTTAAA CAGCACCTA TTA TTGGTGCTG TTTTTATTTGAATAA TERM 908 799039 - 799059 + F 100 -9.7 -5.30616 | opp_overlap 799039 AATTCCATTTTTAAA CAGCACCTA TTA TTGGTGCTG TTTTTATTTGAATAA TERM 909 799084 - 799103 + F 70 -3.6 -4.87786 | opp_overlap 799088, overlap 799095 GAATAAAAAATGGTT CAAAGTTA TCAT TAACTGTG TTTTTATACAGTTAA TERM 910 799095 - 799118 + F 88 -7.6 -4.89852 | opp_overlap 799088, overlap 799084 GGTTCAAAGTTATCA TTAACTGTGT TTTT ATACAGTTAA TTTTTATGAGTATCG TERM 911 800064 - 800044 - g 76 -9.1 -3.72073 | AGGGATTAAAATTAA GTTTGCTGA CTT TCAACAAAC GACAATTGAACATGT dinB 799124 - 800221 + | DNA polymerase IV VF_0735 800411 - 801622 + | alanine racemase TERM 912 801682 - 801725 + T 100 -15.6 -3.08738 | opp_overlap 801687 801694, overlap 801687 801694 TTAAATTATAATTGC GTAAATAAAAAACGGTCAGC ATGT GCTGACCGTTTATTATTTAG TTAGATAGCATTATT TERM 913 801687 - 801720 + T 100 -15.5 -3.93288 | opp_overlap 801687 801694, overlap 801682 801694 TTATAATTGCGTAAA TAAAAAACGGTCAGC ATGT GCTGACCGTTTATTA TTTAGTTAGATAGCA TERM 914 801720 - 801687 - T 100 -15.5 -3.58533 | opp_overlap 801687 801682 801694, overlap 801694 TTATAATTGCGTAAA TAAAAAACGGTCAGC ATGT GCTGACCGTTTATTA TTTAGTTAGATAGCA TERM 915 801713 - 801694 - T 100 -13.6 -5.63517 | opp_overlap 801687 801682 801694, overlap 801687 TGCGTAAATAAAAAA CGGTCAGC ATGT GCTGACCG TTTATTATTTAGTTA TERM 916 801694 - 801713 + T 100 -13.6 -4.62669 | opp_overlap 801694 801687, overlap 801687 801682 TGCGTAAATAAAAAA CGGTCAGC ATGT GCTGACCG TTTATTATTTAGTTA pepD 803190 - 801736 - | aminoacyl-histidine dipeptidase (peptidase D) TERM 917 803760 - 803786 + H 100 -14.6 -6.02914 | GGGCAGTTAATTCTC CGCCATTCAAAA CTA TTTTGGATGGCG TTTTTTTTATCTAAA TERM 918 805038 - 805063 + G 74 -6.1 -4.42974 | overlap 805060 CCATTAGCGGGTATG GTTCCGGCC TACGCAAC GGCTGGAGC TTTGTTCTATGTCGC yieG 804021 - 805313 + | inner membrane protein gpt 805351 - 805809 + | xanthine-guanine phosphoribosyltransferase TERM 919 805834 - 805852 + F 93 -5.3 -6.09888 | opp_overlap 805834 AATATTTTAATAAAA TGACTCT TTTAT AGGGTCA TTTTTTTTATTCAAA TERM 920 806770 - 806782 + G 76 -4.7 -5.04249 | overlap 806765 CGATTTGGCGGTAAT GTCGC ATT GCGTC TTTCTTTTTTAGAGC frsA 805954 - 807192 + | fermentation/respiration switch protein proB 807361 - 808470 + | gamma-glutamyl kinase proA 808500 - 809741 + | gamma-glutamyl phosphate reductase TERM 921 809719 - 809734 + T 73 -7.6 -3.82604 | opp_overlap 809719 809718 AATGGGTAGGTAAAG CGGATT ATCT AATCCG TTCTTAATTCAATAC TERM 922 809774 - 809795 + T 100 -10.2 -5.64873 | opp_overlap 809774 CCTATAAACAAAAAA GGTTGACG CCAAAA CGTCAACC TTTTTTATTATTCAG TERM 923 809795 - 809774 - T 100 -10.9 -5.72622 | opp_overlap 809774 CCTATAAACAAAAAA GGTTGACGC CAAA ACGTCAACC TTTTTTATTATTCAG lipA 810835 - 809870 - | lipoyl synthase TERM 924 810166 - 810176 + g 75 -5.4 -4.67755 | GAACGTTCGGGTGCT GTTC TTT GAAC TTTTTAAGTAGATCT lipB 811505 - 810828 - | lipoyltransferase TERM 925 811600 - 811634 + r 93 -9.5 -4.63218 | opp_overlap 811601 811603, overlap 811601 ATCAAAAGATCAAAA AGGTAGGCAATATTA TCAAC TAATATTGCCTATCA TTTTATTACAGAACC TERM 926 811633 - 811601 - R 100 -10.8 -4.98616 | opp_overlap 811601 811600, overlap 811603 TCAAAAGATCAAAAA GGTAGGCAATATTA TCAAC TAATATTGCCTATC ATTTTATTACAGAAC TERM 927 811601 - 811633 + r 93 -13 -3.3761 | opp_overlap 811601 811603, overlap 811600 TCAAAAGATCAAAAA GGTAGGCAATATTA TCAAC TAATATTGCCTATC ATTTTATTACAGAAC TERM 928 811631 - 811603 - R 84 -12 -2.72899 | opp_overlap 811601 811600, overlap 811601 AAAAGATCAAAAAGG TAGGCAATATTA TCAAC TAATATTGCCTA TCATTTTATTACAGA ybeD 811909 - 811640 - | hypothetical protein TERM 929 812016 - 812001 - R 87 -6.8 -5.40004 | opp_overlap 812001 811996 CAGTAAATTAAAAAA GGCAAC CGAA GCTGCC TTTTATGTGTTTTAA TERM 930 812001 - 812016 + r 70 -4.6 -4.78933 | opp_overlap 812001, overlap 811996 CAGTAAATTAAAAAA GGCAAC CGAA GCTGCC TTTTATGTGTTTTAA dacA 813220 - 812045 - | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) TERM 931 812207 - 812217 + g 76 -3.2 -5.31275 | opp_overlap 812191 ACCTTTGTAGATAGG TGCT TCA AGCG TTTTTTCTAATACAA TERM 932 812487 - 812455 - G 83 -9.9 -3.7941 | opp_overlap 812461 812476 812477, overlap 812438 TAGTTCCCATAACAA CGGCAACTAAACGCA TTT TGCCTTCAGTTGCTG AACTTACTAGGTTAA TERM 933 813517 - 813546 + r 70 -2.2 -5.28481 | TATTTCTTCAATTCT TGGATGATAAAC GCTGAA GTATATTGTCCA TTTTTTGCTTCGATC rlpA 814310 - 813501 - | minor lipoprotein TERM 934 814062 - 814076 + g 80 -10 -3.71378 | TATCCCTTCTTGAGT GAACCC TTT GGGTTC TTTCACTATCGGGTA mrdB 815431 - 814310 - | cell wall shape-determining protein mrdA 817311 - 815431 - | transpeptidase (penicillin-binding protein 2) TERM 935 815599 - 815588 - G 70 -5.8 -4.4448 | AAACCGGTAAATAAA GCGT GGTC ACGC AAATGCTCTGCAATT ybeA 817785 - 817315 - | SPOUT methyltransferase superfamily protein ybeB 818113 - 817790 - | hypothetical protein holA 819195 - 818161 - | DNA polymerase III subunit delta rlpB 819755 - 819198 - | lipoprotein component of outer membrane LPS assembly complex TERM 936 819929 - 819906 - R 100 -13.2 -3.95674 | opp_overlap 819906 AAAATGGTTAAATAA GCACAAGCGG ATAG CCGCTTATGC TTTAGTAGAAAAGTA TERM 937 819906 - 819929 + r 90 -11 -3.72893 | opp_overlap 819906 AAAATGGTTAAATAA GCACAAGCGG ATAG CCGCTTATGC TTTAGTAGAAAAGTA leuS 822559 - 819983 - | leucyl-tRNA synthetase TERM 938 820990 - 821006 + g 91 -10.9 -4.38116 | CACCAATGTATTGGT CTACTGG TAA CCAGTAG TTTGCTTTTTCTGGA TERM 939 822756 - 822742 - g 73 -2.1 -5.26875 | gap 1, opp_overlap 822742 TGTCTAAGCAAAAAA CGG-GT TATA ACGCCG TCTTTGAACGAGTAA ybeL 822726 - 823208 + | hypothetical protein lnt 824785 - 823271 - | apolipoprotein N-acyltransferase TERM 940 824121 - 824134 + g 71 -6.7 -4.1347 | opp_overlap 824120 TTTCCTTGGATCAAC GCAAC TTTA GTTGC TTTATCTGGTTGAGG TERM 941 824877 - 824848 - R 89 -9.3 -4.10179 | opp_overlap 824850, overlap 824849 TATAATTTAGATAAA GTTCAGCCACTGA AATA TCAGTGGCTGATT TTGTTATTCTTCTTC TERM 942 824876 - 824849 - R 87 -12.8 -3.05384 | opp_overlap 824850, overlap 824848 ATAATTTAGATAAAG TTCAGCCACTGA AATA TCAGTGGCTGAT TTTGTTATTCTTCTT TERM 943 824850 - 824875 + r 100 -16.3 -5.01823 | opp_overlap 824849 824848 TAATTTAGATAAAGT TCAGCCACTGA AATA TCAGTGGCTGA TTTTGTTATTCTTCT ybeX 825759 - 824881 - | predicteed ion transport ybeY 826288 - 825827 - | putative metalloprotease VF_0758 827489 - 826305 - | PhoH-like protein TERM 944 827490 - 827467 - G 100 -10.4 -5.86976 | opp_overlap 827467 CTATAAAAGAAAAAA GATGACTGAG TAAC CTCAATCATC TTTATTTGTCTTTGA TERM 945 827467 - 827490 + g 84 -8.2 -4.73432 | opp_overlap 827467 CTATAAAAGAAAAAA GATGACTGAG TAAC CTCAATCATC TTTATTTGTCTTTGA miaB 828949 - 827525 - | isopentenyl-adenosine A37 tRNA methylthiolase TERM 946 828714 - 828730 + g 81 -3 -5.63645 | gap 1, opp_overlap 828714, overlap 828714 828716 ACACAACCACCAACA CC-GATC ACTA GATCTGG TTTTTTATCTTTTAG ubiF 829164 - 830321 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 947 830370 - 830390 + T 84 -5.4 -5.43414 | opp_overlap 830370 ACTGGAAACGCAGAA GGTGAGCA TTAAT TGGTCACC TTTTTTGTATCTGAT TERM 948 830487 - 830466 - T 95 -6.6 -5.92337 | opp_overlap 830466 ACAGACGAAAAAAAA GCCCATCA AATTAA TGATGAGC TTTTTAAAAGTGGCT TERM 949 832544 - 832525 - T 100 -13.6 -5.20534 | opp_overlap 832525 AGCAAGTAATAAAAA GGCCAGCA AATT TGCTGGCC TTATTTAATTATACG TERM 950 832525 - 832544 + T 100 -13.6 -4.12296 | opp_overlap 832525 AGCAAGTAATAAAAA GGCCAGCA AATT TGCTGGCC TTATTTAATTATACG ychF 833644 - 832553 - | GTP-binding protein TERM 951 832945 - 832955 + g 85 -5.4 -5.35224 | opp_overlap 832945 CAGCACAAACAGGAA CAAC TAC GTTG TTTTCTTTTTCTGCG pth 834134 - 833664 - | peptidyl-tRNA hydrolase TERM 952 834413 - 834394 - R 100 -12.8 -5.19879 | opp_overlap 834394 TTCCAAATACAAAAA CGCCCCGC AAAG GCAGGGCG TTTGAATAGATTTCT TERM 953 834394 - 834413 + r 86 -10.6 -3.70478 | opp_overlap 834394 TTCCAAATACAAAAA CGCCCCGC AAAG GCAGGGCG TTTGAATAGATTTCT prs 835433 - 834435 - | ribose-phosphate pyrophosphokinase ispE 836287 - 835421 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase lolB 836910 - 836284 - | outer membrane lipoprotein LolB hemA 837080 - 838336 + | glutamyl-tRNA reductase prfA 838376 - 839464 + | peptide chain release factor 1 TERM 954 839515 - 839539 + G 82 -11.5 -3.24902 | ATTCAATCTCTGACG CTTGAGGGGAG TGA TTCTCCTCAAG TTGATGCTGCTGTTC prmC 839464 - 840318 + | N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 TERM 955 840635 - 840625 - g 79 -5.4 -4.88293 | opp_overlap 840625 AATGGTAAAAACAAA GTCT TTA AGAC CTTTGCATTTTTAGG VF_0770 840334 - 840717 + | transcriptional regulator ychA 840720 - 841532 + | transcriptional regulator kdsA 841544 - 842398 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 956 842462 - 842411 - T 91 -12.1 -3.58269 | gap 2, opp_overlap 842425 842451, overlap 842425 TAATCGAGTTTTAAA GAATAAATAAAAAAGCCCAAGAGAG AATA CTTTCTTGGGCTTTTTTATT-AT-C TGAATGGTAAAAAAT TERM 957 842425 - 842450 + T 100 -14.1 -5.60689 | opp_overlap 842411 842425 AGAATAAATAAAAAA GCCCAAGAGAG AATA CTTTCTTGGGC TTTTTTATTATCTGA TERM 958 842450 - 842425 - T 100 -11.9 -5.82036 | opp_overlap 842425, overlap 842411 AGAATAAATAAAAAA GCCCAAGAGAG AATA CTTTCTTGGGC TTTTTTATTATCTGA cobA 843253 - 842477 - | uroporphyrin-III C-methyltransferase TERM 959 843311 - 843337 + r 71 -6.7 -4.26903 | opp_overlap 843311 AGTCGATAAAAAAAA TCACCCTTAAT CAATT ATTAAGAGTGA TTTTAATCGCATGAG TERM 960 843337 - 843311 - R 100 -8.9 -5.94713 | opp_overlap 843311 AGTCGATAAAAAAAA TCACCCTTAAT CAATT ATTAAGAGTGA TTTTAATCGCATGAG VF_0774 844191 - 843382 - | nitrite transporter nirD 844630 - 844301 - | nitrite reductase small subunit nirB 847209 - 844633 - | nitrite reductase, large subunit, NAD(P)H-binding TERM 961 847319 - 847331 + r 79 -4.1 -5.30348 | AGGGGTAGCTCTAAG GTGGT AAT ATCAC TTTTTGTTATTAAAT TERM 962 847478 - 847453 - R 100 -10.5 -6.06723 | opp_overlap 847453 TTTCTGAAAAAAAAA GACAGAATGTG AATT CACGTTCTGTC TTTAATTTAGGGATA TERM 963 847453 - 847478 + r 100 -12.7 -4.06502 | opp_overlap 847453 TTTCTGAAAAAAAAA GACAGAATGTG AATT CACGTTCTGTC TTTAATTTAGGGATA VF_0777 849380 - 847506 - | methyl-accepting chemotaxis protein TERM 964 849845 - 849831 - g 77 -6.4 -4.56597 | GTCTTTCTCTAAAAA CAGCTA TTG CAGCTG CATTGGTAACAACTT ushA 849809 - 851467 + | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 965 851493 - 851512 + T 100 -10 -5.626 | opp_overlap 851493 ACTGGTTAATAAAAA GCCTCCAG ATAT TTGGAGGC TTTTTTTATGCACTG TERM 966 851512 - 851493 - T 100 -9.3 -5.06816 | opp_overlap 851493 ACTGGTTAATAAAAA GCCTCCA GATATT TGGAGGC TTTTTTTATGCACTG ydaL 852102 - 851518 - | hypothetical protein TERM 967 852401 - 852422 + r 100 -14.5 -5.24449 | opp_overlap 852401 ACCACTTTTAAAAAA GCCGCATCA GAAA TGATGCGGC TTTTTTACGTTTGTC TERM 968 852422 - 852401 - R 100 -14.5 -5.03715 | opp_overlap 852401 ACCACTTTTAAAAAA GCCGCATCA GAAA TGATGCGGC TTTTTTACGTTTGTC TERM 969 852681 - 852658 - R 77 -5.3 -4.99035 | TGATTGATATAAAAA CGGCATTGA TATCAC TCAACACCG TTTATTATTTCCCTA copG 853166 - 852729 - | CopG protein copA 855950 - 853269 - | copper transporter TERM 970 855381 - 855396 + g 82 -4 -5.45802 | gap 1, opp_overlap 855381 TTCAGCAAGATTAAC CGT-CAC AGA GTGTACG TTTTTATTTTGCGCA cueR 856036 - 856437 + | DNA-binding transcriptional activator of copper-responsive regulon genes ybbN 857328 - 856474 - | thioredoxin domain-containing protein TERM 971 857405 - 857441 + r 90 -11.2 -3.53091 | gap 1, opp_overlap 857405, overlap 857412 CAAGGAGACAAAAAA CAAGAAAGCCACGATAT TAAA ATATTGTGGCTTT-TTG TTTGCAAGCAAAGGT TERM 972 857441 - 857405 - R 95 -9 -5.42131 | gap 1, opp_overlap 857405 857412 CAAGGAGACAAAAAA CAAGAAAGCCACGATAT TAAA ATATTGTGGCTTT-TTG TTTGCAAGCAAAGGT TERM 973 857412 - 857435 + r 100 -10.4 -5.27335 | opp_overlap 857405, overlap 857405 ACAAAAAACAAGAAA GCCACGATAT TAAA ATATTGTGGC TTTTTGTTTGCAAGC ybbO 858484 - 857657 - | short chain dehydrogenase TERM 974 858628 - 858645 + r 95 -8.5 -5.04385 | opp_overlap 858628 TATAAAACAAAAAAA GCCAATA ATGC TATTGGC TTTTTTGGGAGTATG TERM 975 858645 - 858628 - R 100 -8.5 -6.14618 | opp_overlap 858628 TATAAAACAAAAAAA GCCAATA ATGC TATTGGC TTTTTTGGGAGTATG proX 859676 - 858669 - | glycine betaine transporter periplasmic subunit TERM 976 858758 - 858768 + g 81 -6.8 -4.82855 | opp_overlap 858757 CGTGAGATTCAATAT CAGC AGT GCTG TTTTTACCTTTACTC proW 860761 - 859679 - | glycine betaine transporter subunit proV 861952 - 860765 - | glycine betaine transporter subunit TERM 977 862271 - 862319 + r 100 -10.8 -4.13767 | gap 2, opp_overlap 862289, overlap 862275 GCTAATGATCAGTTC TATC-TTCACTTCGA-TAAACAAT GAC ATTGTCTACTCGAAGTGAATGATA TTTTAAAGTGGAAGG TERM 978 862275 - 862314 + r 84 -11.8 -2.94337 | gap 1, opp_overlap 862289, overlap 862271 ATGATCAGTTCTATC TTCACTTCGA-TAAACAAT GAC ATTGTCTACTCGAAGTGAA TGATATTTTAAAGTG yfcH 863247 - 862342 - | hypothetical protein TERM 979 862934 - 862919 - G 70 -3.3 -5.0065 | GATCCAGAAATAAAA CAACT AGGTGG AGTTG AAGAGGCAAGACAAA TERM 980 863746 - 863732 - g 74 -4.2 -5.1101 | overlap 863733 CCACCATTGAAAAAA GGCGAT ATT ATCGCT CATGGTCATACGCAT TERM 981 863745 - 863733 - g 70 -7.7 -3.65883 | overlap 863732 CACCATTGAAAAAAG GCGAT ATT ATCGC TCATGGTCATACGCA yfcE 863375 - 863926 + | phosphodiesterase TERM 982 863944 - 863976 + T 71 -7.9 -3.53298 | opp_overlap 863932 863943 863951, overlap 863951 ATATTTTTTAGATAT AAAAAAAGAAGCG TAATAAT CGCTTCTTTTTTA TTAGTTTGAAATCAT TERM 983 863951 - 863969 + T 88 -6 -5.59655 | opp_overlap 863951 863943, overlap 863944 TTAGATATAAAAAAA GAAGCG TAATAAT CGCTTC TTTTTTATTAGTTTG TERM 984 863969 - 863951 - T 88 -6 -5.76633 | opp_overlap 863944 863951, overlap 863943 TTAGATATAAAAAAA GAAGCG TAATAAT CGCTTC TTTTTTATTAGTTTG toxS 864539 - 863994 - | regulatory protein ToxS toxR 865411 - 864530 - | transcriptional activator ToxR htpG 865643 - 867538 + | heat shock protein 90 TERM 985 867593 - 867561 - f 100 -11.5 -4.86731 | opp_overlap 867561 TTGTGCTAAATAAAA TGAGACCTTAGTA AAGATAA CACTAAGGTCTCA TTGTCTTTAATGACG TERM 986 867561 - 867593 + F 90 -10.8 -3.86252 | opp_overlap 867561 TTGTGCTAAATAAAA TGAGACCTTAGT AAAGATAAC ACTAAGGTCTCA TTGTCTTTAATGACG adk 867800 - 868444 + | adenylate kinase TERM 987 868479 - 868497 + F 93 -8.1 -5.60993 | opp_overlap 868479 TATTGCTATATTGAA GCGGCCT TTTAT AGGTCGC TTTTTTTATGGAAAA hemH 868530 - 869498 + | ferrochelatase TERM 988 869763 - 869784 + F 76 -4.3 -5.18371 | opp_overlap 869776 CTATTTTTATAGTCC CGTGACACA AGGA TGCGACACG TTTTGTTTTGTCGCA tig 869840 - 871138 + | trigger factor TERM 989 871193 - 871220 + F 100 -17.2 -4.77173 | opp_overlap 871193 AAGATCTGCTAATAA TGGTCCGAATGA AGCG TCATTCGGACCA TTTATTTTATAAGGG TERM 990 871220 - 871193 - f 100 -17.2 -3.63341 | opp_overlap 871193 AAGATCTGCTAATAA TGGTCCGAATGA AGCG TCATTCGGACCA TTTATTTTATAAGGG clpP 871244 - 871867 + | ATP-dependent Clp protease proteolytic subunit TERM 991 871895 - 871879 - f 80 -5.1 -5.31456 | CTAATTCATAAAAAA GCAGTAA CGT TTACAGC AAAGAAGGTAAGTTA clpX 871954 - 873240 + | ATP-dependent protease ATP-binding subunit TERM 992 873233 - 873223 - f 71 -3.2 -5.08878 | overlap 873228 AACACAGAAACAAAA GCAA TTT CTGC TGAATAGCAAAAGAC TERM 993 873267 - 873282 + F 100 -10.4 -6.04324 | opp_overlap 873267 TTAGTTGAATAAAAA GGAGGC ATTG GCCTCC TTTTTTATTTTTTAA TERM 994 873282 - 873267 - f 100 -10.4 -5.08601 | opp_overlap 873267 TTAGTTGAATAAAAA GGAGGC ATTG GCCTCC TTTTTTATTTTTTAA TERM 995 875364 - 875352 - g 84 -7.7 -4.72986 | GATTTCTACGAAAAA CGTGA TAT TCACG TACACGTACCAGAAG lon 873372 - 875726 + | DNA-binding ATP-dependent protease Lon (La) TERM 996 875755 - 875783 + F 73 -8.9 -3.17186 | opp_overlap 875754 875752 875755, overlap 875752 875750 875764 ACGTTGATATAACAG GGCTGACAAGTCG AAA TGACTTGTCACTC TATATTGATATCGTT hupB 875875 - 876171 + | HU, DNA-binding transcriptional regulator, beta subunit TERM 997 876214 - 876200 - f 75 -10 -2.72109 | overlap 876199 876189 AAAACTCTACACAAG CTAGCG TAA CGCTAG TAGACTAGAGATATG TERM 998 876238 - 876255 + F 100 -11.3 -5.64873 | AGATATGAGTCATAG GCGCATC CAAT GATGCGC TTTTTTATTGTTAAA ppiD 876376 - 878232 + | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 999 878260 - 878290 + F 100 -15.4 -4.59773 | opp_overlap 878263, overlap 878262 878263 878265 TAACTGATAAATATA AAAGACGGGCCCCT ATA AGGGGCCCGTCGTG TTTTTAAAGATAGAA TERM 1000 878262 - 878288 + F 100 -18 -3.91506 | opp_overlap 878263, overlap 878260 878263 878265 ACTGATAAATATAAA AGACGGGCCCCT ATA AGGGGCCCGTCG TGTTTTTAAAGATAG TERM 1001 878263 - 878287 + F 100 -21.5 -2.94422 | opp_overlap 878263, overlap 878262 878260 878265 CTGATAAATATAAAA GACGGGCCCCT ATA AGGGGCCCGTC GTGTTTTTAAAGATA TERM 1002 878287 - 878263 - f 100 -21.5 -4.84918 | opp_overlap 878263 878262 878260 878265 CTGATAAATATAAAA GACGGGCCCCT ATA AGGGGCCCGTC GTGTTTTTAAAGATA TERM 1003 878265 - 878285 + F 100 -18.3 -3.01831 | opp_overlap 878263, overlap 878263 878262 878260 GATAAATATAAAAGA CGGGCCCCT ATA AGGGGCCCG TCGTGTTTTTAAAGA TERM 1004 878377 - 878393 + F 74 -2.3 -5.46698 | ATAGGTGTTGTTTTC TGATG TATCAAT CATCA TTTTTTCATTTTAAA comE 878420 - 878722 + | ComE-related protein TERM 1005 878794 - 878776 - T 83 -5.9 -5.18726 | opp_overlap 878777, overlap 878777 TTGGTACAATAAAAA GGCAGCC ATGAA GGCTGCT TTTTTGTGCTAAATC TERM 1006 878777 - 878793 + T 100 -9.4 -5.31877 | opp_overlap 878776 878777 TGGTACAATAAAAAG GCAGCC ATGAA GGCTGC TTTTTTGTGCTAAAT TERM 1007 878793 - 878777 - T 80 -9.4 -3.70512 | opp_overlap 878777, overlap 878776 TGGTACAATAAAAAG GCAGCC ATGAA GGCTGC TTTTTTGTGCTAAAT TERM 1008 878815 - 878833 + T 77 -9 -3.66356 | overlap 878811 GTGCTAAATCGTATT CTGAATAT TTG ATATTCAG TTTGGAATTACCGAT VF_0802 880203 - 878848 - | di-/tripeptide transporter TERM 1009 879257 - 879267 + g 71 -6.8 -4.0896 | GCAAATTTAACTGGT GAGC TTG GCTC TTTTGGACCGAGTTT TERM 1010 880508 - 880527 + H 74 -2.2 -5.49729 | overlap 880525 TGTGCGTGCAACTAT TGATTTTT ACTA GGAAATCA TTTTTTTGAATGATT rfaH 880586 - 881080 + | transcriptional activator RfaH TERM 1011 881123 - 881077 - T 85 -11.8 -3.14125 | opp_overlap 881086 881093, overlap 881093 CTCAGATATCGAATA TTGATGCATAAAAAAAGCGCCT ATA AGGCGCTTTTTTATTACATTAA AATGGTGCTAGTGCA TERM 1012 881086 - 881114 + T 91 -13.3 -3.18452 | opp_overlap 881077 881093, overlap 881093 CGAATATTGATGCAT AAAAAAAGCGCCT ATA AGGCGCTTTTTTA TTACATTAAAATGGT TERM 1013 881107 - 881093 - T 100 -11.4 -5.64274 | opp_overlap 881086 881093, overlap 881077 TGATGCATAAAAAAA GCGCCT ATA AGGCGC TTTTTTATTACATTA TERM 1014 881093 - 881107 + T 100 -11.4 -5.5074 | opp_overlap 881093 881077, overlap 881086 TGATGCATAAAAAAA GCGCCT ATA AGGCGC TTTTTTATTACATTA asnB 882806 - 881139 - | asparagine synthetase B TERM 1015 883034 - 883062 + r 91 -11.8 -3.62723 | opp_overlap 883034, overlap 883030 AAGAGATAAAAAAAA GAGAGCACAACA AATGA TGCTGTGCTCTC TTCATTATTTGAATG TERM 1016 883062 - 883034 - R 100 -14 -6.08563 | opp_overlap 883034 883030 AAGAGATAAAAAAAA GAGAGCACAACA AATGA TGCTGTGCTCTC TTCATTATTTGAATG VF_0805 884700 - 883096 - | glutathione-regulated potassium-efflux system protein KefC TERM 1017 884637 - 884624 - G 82 -3.7 -5.4833 | opp_overlap 884624 CCAGCTAATAAAAAA CCGAC AAGA GGCGG TAGGTTAATTTTTAA TERM 1018 884751 - 884733 - R 100 -11 -5.53288 | GGTAATCGAAAAAAA GGGCTGCT AAT AGCAACCC TTAGAATAATAACAC nagC 885999 - 884785 - | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine nagA1 887137 - 886001 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1019 887278 - 887299 + H 74 -5.3 -4.74215 | gap 1, opp_overlap 887273 887278, overlap 887273 TCAGTAATGACAAAA TTTGGT-CAT AAT ATGCACCAAA TTTTATTCCTGATGT TERM 1020 887299 - 887278 - H 71 -5.3 -4.56607 | gap 1, opp_overlap 887278 887273, overlap 887273 TCAGTAATGACAAAA TTTGGT-CAT AAT ATGCACCAAA TTTTATTCCTGATGT nagE 887540 - 889033 + | fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components TERM 1021 889089 - 889056 - f 74 -6.7 -4.32201 | opp_overlap 889063, overlap 889063 GTAATTAACTCAAAA TCAACAAGCCGCTCT CTTT AGAGCGGCTTTTTTT ATATAAATAACCAAA TERM 1022 889063 - 889082 + F 100 -13.6 -5.72616 | opp_overlap 889056 889063 ACTCAAAATCAACAA GCCGCTCT CTTT AGAGCGGC TTTTTTTATATAAAT TERM 1023 889082 - 889063 - f 100 -13.6 -3.97102 | opp_overlap 889063, overlap 889056 ACTCAAAATCAACAA GCCGCTCT CTTT AGAGCGGC TTTTTTTATATAAAT glnS 889209 - 890867 + | glutaminyl-tRNA synthetase TERM 1024 890893 - 890910 + T 100 -9.9 -5.71712 | opp_overlap 890893 CTAGCTAATAAAAAA CCAGCAT GAAA ATGCTGG TTTTTTTATATGAGC TERM 1025 890910 - 890893 - T 100 -9.9 -5.4833 | opp_overlap 890893 CTAGCTAATAAAAAA CCAGCAT GAAA ATGCTGG TTTTTTTATATGAGC fur 891389 - 890946 - | ferric uptake regulator TERM 1026 891942 - 891924 - g 77 -6 -4.62561 | opp_overlap 891923, overlap 891926 CAAGAAACAAAAGAA GGGGAAAA GCA TTTTCCGC AATTTGAAGTATATA VF_0811 891570 - 892034 + | hypothetical protein fldA 892615 - 892088 - | flavodoxin FldA VF_0813 892896 - 892675 - | hypothetical protein ybfF 893760 - 892984 - | putative esterase/lipase YbfF TERM 1027 894114 - 894125 + G 75 -5.8 -4.74453 | opp_overlap 894114 TCAGCATTAGATAAA GCGA TCGA TCGC TTTTTAACTGTATTA seqA 893856 - 894398 + | replication initiation regulator SeqA TERM 1028 894458 - 894490 + G 72 -8.4 -3.56643 | opp_overlap 894458 TCAAATGGCTATACA TCCTCGTGCTGGGC AGAAA GCTCAGCAAGAAGA TTTACACAATATCCC pgm 894447 - 896093 + | phosphoglucomutase TERM 1029 896116 - 896132 + F 100 -9.4 -5.86061 | opp_overlap 896112 896116 AGTAATACAAATTAA GCAGCG CATGT CGCTGC TTTTTTTTGATAAGA TERM 1030 896132 - 896116 - f 80 -9.4 -3.69943 | opp_overlap 896116, overlap 896112 AGTAATACAAATTAA GCAGCG CATGT CGCTGC TTTTTTTTGATAAGA ybgI 896158 - 896913 + | metal-binding protein TERM 1031 896971 - 896950 - T 100 -11.7 -5.71712 | opp_overlap 896950 GGTGATATAAAAAAA GGTTGATGT ATTT ACATCAACC TTTTTGTTCATAGGC TERM 1032 896950 - 896971 + T 100 -11.7 -5.1356 | opp_overlap 896950 GGTGATATAAAAAAA GGTTGATGT ATTT ACATCAACC TTTTTGTTCATAGGC gltA 898295 - 897006 - | type II citrate synthase TERM 1033 898008 - 898020 + g 74 -9.1 -3.55071 | ATATTCTTCTCTGTT TGGCG CTT CGCCA TTTAGAAGGATATAA sdhC 898683 - 899084 + | succinate dehydrogenase cytochrome b556 large membrane subunit sdhD 899078 - 899425 + | succinate dehydrogenase, membrane subunit, binds cytochrome b556 TERM 1034 900856 - 900837 - g 77 -7.8 -4.21812 | GTGTATGCAAAATAA CTTCTCGG TATT CCGTGAAG GTGATGCAATGGCAA sdhA 899425 - 901194 + | succinate dehydrogenase flavoprotein subunit sdhB 901207 - 901920 + | succinate dehydrogenase iron-sulfur subunit TERM 1035 901929 - 901956 + F 90 -11.4 -3.78934 | overlap 901930 GGTATAATTTACTTT TCCTCAACCTAT GTTG ATAGGTTGAGGC TTATTATAAGCCCGG TERM 1036 901930 - 901955 + F 95 -14.9 -2.87146 | overlap 901929 GTATAATTTACTTTT CCTCAACCTAT GTTG ATAGGTTGAGG CTTATTATAAGCCCG TERM 1037 902580 - 902564 - g 71 -3.7 -4.87037 | overlap 902565 AATACAGAGGAAAAA CGTTG GATTCAA CAACG TCTAGAATCTGTAGC TERM 1038 904672 - 904660 - g 77 -7.7 -4.24726 | opp_overlap 904660, overlap 904665 AGAAGAACCTCAAAA CCAAG GTG CTTGG TATTCAAGCCAACAT sucA 902018 - 904834 + | alpha-ketoglutarate decarboxylase sucB 904854 - 906065 + | dihydrolipoamide acetyltransferase TERM 1039 906088 - 906113 + F 71 -7.5 -3.69338 | opp_overlap 906090, overlap 906090 GTTTAGTGACAAACA AAGGCTGCCAT GCTC ACGGCAGCCTC TTATTCAACTTCATT TERM 1040 906090 - 906111 + F 81 -10.1 -3.42069 | opp_overlap 906090, overlap 906088 TTAGTGACAAACAAA GGCTGCCAT GCTC ACGGCAGCC TCTTATTCAACTTCA TERM 1041 906111 - 906090 - f 100 -12.3 -4.57482 | opp_overlap 906090 906088 TTAGTGACAAACAAA GGCTGCCAT GCTC ACGGCAGCC TCTTATTCAACTTCA TERM 1042 906194 - 906179 - f 72 -4.7 -4.82667 | TTAGGACATTAAAAA TTCCC ATAAAA GGGAA TAACATAAAATGGAT sucC 906218 - 907384 + | succinyl-CoA synthetase subunit beta TERM 1043 908220 - 908210 - g 79 -5.4 -4.87807 | TTAAGACAGTAAAAA GTCT TGC AGAC ATCGGTAAAGCACTA sucD 907384 - 908256 + | succinyl-CoA synthetase subunit alpha TERM 1044 908288 - 908311 + F 95 -9 -5.24989 | opp_overlap 908288 ATGAATAACTCAGAA GCCATTTATA GAAA TATGAATGGC TTTTTTAATATGTGA VF_0827 908444 - 910099 + | methyl-accepting chemotaxis protein TERM 1045 910132 - 910109 - T 100 -15.4 -5.69262 | opp_overlap 910109 TTATAAAAATAAAAA GAGCAAGACG AAAT CGTCTTGCTC TTTTTGTATGGTTTC TERM 1046 910109 - 910132 + T 100 -15.4 -5.06585 | opp_overlap 910109 TTATAAAAATAAAAA GAGCAAGACG AAAT CGTCTTGCTC TTTTTGTATGGTTTC znuB 910979 - 910194 - | zinc ABC transporter membrane protein TERM 1047 910739 - 910751 + g 70 -3.4 -4.95155 | ATAGGGTATCGGTAG CAAC AAGAC GTTG TTTTTGTAATGTCAC znuC 911746 - 910976 - | zinc ABC transporter ATP-binding protein TERM 1048 912397 - 912407 + G 71 -4 -4.92756 | opp_overlap 912397 TAGCCCCAGTGAAAA GTAA AGG TTAC TTTGTTTTTCATGAT znuA 911835 - 912728 + | zinc ABC transporter periplasmic substrate-binding protein yebA 912725 - 914065 + | peptidase TERM 1049 914119 - 914093 - f 100 -10.3 -4.16259 | gap 1, opp_overlap 914093 ACATAATTATATAAA GCCCTG-CATAT ATTA ATATGACAGGGC TTTTTTATATCCTTT TERM 1050 914093 - 914119 + F 100 -10.3 -5.43487 | gap 1, opp_overlap 914093 ACATAATTATATAAA GCCCTG-CATAT ATTA ATATGACAGGGC TTTTTTATATCCTTT TERM 1051 914230 - 914244 + G 89 -5.8 -5.38398 | opp_overlap 914230 TGCTTTTCTTCAGAA TACTTA TTT TAAGTA TTTTTCTCTTTTTCT TERM 1052 917511 - 917521 + G 73 -6.8 -4.20106 | overlap 917518 TCTGGTCAGAAAGTT GCAG ATG CTGC TTTTGAATCAGGTTT VF_0832 914214 - 917621 + | hypothetical protein TERM 1053 917799 - 917765 - f 100 -8.5 -6.28967 | opp_overlap 917797, overlap 917767 917768 CATAAAGAAAAAAAA GATCGTGACGTAGCC GGGGG GACTACGCCACGGGC GCCAAAGACGCCTTC TERM 1054 917797 - 917767 - f 100 -9.7 -4.74858 | overlap 917765 917768 TAAAGAAAAAAAAGA TCGTGACGTAGCC GGGGG GACTACGCCACGG GCGCCAAAGACGCCT TERM 1055 917796 - 917768 - f 93 -13.2 -3.41254 | overlap 917767 917765 AAAGAAAAAAAAGAT CGTGACGTAGCC GGGGG GACTACGCCACG GGCGCCAAAGACGCC TERM 1056 917825 - 917852 + F 93 -14.4 -3.05963 | opp_overlap 917832, overlap 917825 917828 CCTTCGCTTGCTGCC GAAGTAACAAGA TACT TCTTGTTACTTC TATTAGAATAAAAGT TERM 1057 917828 - 917849 + F 86 -10.3 -3.67611 | opp_overlap 917832, overlap 917825 917825 TCGCTTGCTGCCGAA GTAACAAGA TACT TCTTGTTAC TTCTATTAGAATAAA feoA 918246 - 918473 + | ferrous ion transport protein A feoB 918475 - 920751 + | fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein VF_0835 920748 - 920990 + | hypothetical protein TERM 1058 921024 - 921043 + T 100 -10 -5.60993 | opp_overlap 921024 AGTGATAAATAAAAA CGAGAGCC AATT GGTTCTCG TTTTTTTATGGGGGA TERM 1059 921043 - 921024 - T 89 -7.8 -5.38958 | opp_overlap 921024 AGTGATAAATAAAAA CGAGAGCC AATT GGTTCTCG TTTTTTTATGGGGGA TERM 1060 921356 - 921333 - T 100 -9.6 -5.73339 | opp_overlap 921333 921330 921327 ATAAGCACAAAAAAA GACACGCAAC TTTC ATCGCGTGTC TTCTTATTTTCATTA TERM 1061 921333 - 921356 + T 71 -6.7 -4.26559 | opp_overlap 921333, overlap 921330 921327 ATAAGCACAAAAAAA GACACGCAA CTTTCA TCGCGTGTC TTCTTATTTTCATTA pta 923564 - 921399 - | phosphate acetyltransferase TERM 1062 923632 - 923651 + r 78 -7.8 -4.11371 | opp_overlap 923632 CATAGAAAGAAAAAA GGCTAACC TAAT GGCTAGCC TTTTAGGAGATATTA TERM 1063 923651 - 923632 - R 100 -10 -5.76237 | opp_overlap 923632 CATAGAAAGAAAAAA GGCTAACC TAAT GGCTAGCC TTTTAGGAGATATTA TERM 1064 923669 - 923690 + r 70 -8.1 -3.33492 | gap 1, opp_overlap 923669 923671, overlap 923672 TTAGGAGATATTACA GAC-CAGCTA GTT TAGCTGTGTC TTCTGCGATAACTAG TERM 1065 923672 - 923686 + r 73 -8.6 -3.18118 | opp_overlap 923671 923669, overlap 923669 GGAGATATTACAGAC CAGCTA GTT TAGCTG TGTCTTCTGCGATAA ackA 924860 - 923664 - | acetate kinase yfbV 925178 - 925627 + | hypothetical protein TERM 1066 925661 - 925678 + T 100 -9.9 -5.32699 | opp_overlap 925661 ATAGATAATAAAAAA GGAGCTA ATTT TAGCTCC TTTTTTGATCTTTAG TERM 1067 925678 - 925661 - T 100 -9.9 -5.62045 | opp_overlap 925661 ATAGATAATAAAAAA GGAGCTA ATTT TAGCTCC TTTTTTGATCTTTAG TERM 1068 925724 - 925701 - T 87 -11.2 -3.18383 | opp_overlap 925704, overlap 925704 ATCTTTAGTTATCAA CAATCTGAAT GAGT ATTCAGATTG TTAAAATAGGAATTA TERM 1069 925721 - 925704 - T 70 -7.1 -3.73647 | opp_overlap 925704, overlap 925701 TTTAGTTATCAACAA TCTGAAT GAGT ATTCAGA TTGTTAAAATAGGAA argS 927470 - 925737 - | arginyl-tRNA synthetase TERM 1070 926192 - 926209 + g 78 -4.1 -5.24003 | opp_overlap 926183, overlap 926183 926184 926206 ACTTAACTGCTGCCA TTGCAAC GGTT GTAGCAA TTTTTGCTTTTTCTT TERM 1071 926206 - 926216 + g 81 -5.4 -5.06414 | overlap 926184 926192 ATTGCAACGGTTGTA GCAA TTT TTGC TTTTTCTTCAGCAGA TERM 1072 927562 - 927576 + H 79 -3.6 -5.45652 | AAAACAGGGGATATT TAATAG TTT CTGTTA TTTTTTATTGCAACT yecM 927678 - 928274 + | hypothetical protein TERM 1073 928301 - 928326 + T 88 -7 -5.19328 | gap 1, opp_overlap 928296 928301 TTTAAGAACATAAAA GGCATCCA-AT CTAGA ATCTGGATGCC TTTTTATTATGGAGT TERM 1074 928326 - 928301 - T 83 -7.7 -4.79752 | gap 1, opp_overlap 928301, overlap 928296 TTTAAGAACATAAAA GGCATCCA-ATC TAG AATCTGGATGCC TTTTTATTATGGAGT VF_0841 929580 - 928348 - | dehydrogenase TERM 1075 929402 - 929372 - G 71 -6.2 -4.27316 | opp_overlap 929390 929395, overlap 929397 TCTTTGAATTGAAAA CAAGCATCTTCAAC AGC GTTTAACATGCCTG CATGTTTAATGGATT TERM 1076 929636 - 929602 - R 100 -11.6 -4.60797 | opp_overlap 929600, overlap 929603 TCCTTAGAGACAAAA GCACCACTTTAGGT ATCAGTA ACCTAAAGTGGTGA GGATATTATTATATT TERM 1077 929635 - 929603 - R 100 -15.1 -3.35996 | opp_overlap 929600, overlap 929602 CCTTAGAGACAAAAG CACCACTTTAGGT ATCAGTA ACCTAAAGTGGTG AGGATATTATTATAT VF_0842 930747 - 929680 - | putative O-methyltransferase TERM 1078 930788 - 930778 - R 70 -4 -4.90381 | TTGAAGATAATAAAA TGAT CAT ATCA GTGGTATTGAGTGAA VF_0843 931426 - 930851 - | putative lipoprotein VF_0844 931556 - 932284 + | hypothetical protein VF_0845 932289 - 933086 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase VF_0846 933055 - 933351 + | acyl carrier protein VF_0847 933363 - 933620 + | acyl carrier protein TERM 1079 933661 - 933612 - f 75 -7.1 -4.11216 | opp_overlap 933620, overlap 933621 GCTGCACTGTTAAAA GGCGAATAATGCGTTGGCTGACA GCGC TGTCAGCCATTGCACTCTTAGCA TATCCGCTAGCGGTC TERM 1080 933620 - 933653 + F 80 -10.3 -3.07962 | opp_overlap 933612 933621 GTTAAAAGGCGAATA ATGCGTTGGCTGACA GCGC TGTCAGCCATTGCAC TCTTAGCATATCCGC TERM 1081 933652 - 933621 - gf 90 -11.6 -3.73106 | opp_overlap 933620, overlap 933612 TTAAAAGGCGAATAA TGCGTTGGCTGACA GCGC TGTCAGCCATTGCA CTCTTAGCATATCCG VF_0848 933620 - 934180 + | DNA gyrase subunit B TERM 1082 934752 - 934794 + GF 76 -7.8 -4.03234 | TTTATTATTTAGAGT GTTGTGGCCATTAACGGC TGGTCGT GCCTTTAGTCGCCATAAC TTTATCTACCCAGAG TERM 1083 935334 - 935317 - gf 75 -2.6 -5.30348 | overlap 935318 ATGGAAGAAGAAAAA CGCACC GTATTG GGCGCA GTGATTGTTCTATCA VF_0849 934141 - 935544 + | AMP-(fatty)acid ligase VF_0850 935558 - 935932 + | AMP-(fatty)acid ligase VF_0851 935935 - 937626 + | acyltransferase VF_0852 937616 - 939151 + | phenylalanine and histidine ammonia-lyase TERM 1084 939333 - 939317 - g 74 -3.7 -5.03747 | AAATGCTTGAAAAAA TCGGT TATAGCT ACCGA GATATGATGGCGTCA VF_0853 939163 - 939609 + | esterase VF_0854 939602 - 940222 + | hypothetical protein VF_0855 940744 - 942639 + | transporter VF_0856 942629 - 943255 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1085 943731 - 943759 + G 74 -5.2 -4.77165 | overlap 943726 943733 943736 ACCAACGTATGCGAT CTCAACCGCTTG TTCCT CAAGTGGTCGTG TTTTCTTATCAGCAA VF_0857 943261 - 944448 + | 3-oxoacyl-(acyl carrier protein) synthase I VF_0858 944439 - 944909 + | 3-hydroxylacyl-(acyl carrier protein) dehydratase TERM 1086 945470 - 945455 - g 72 -3.2 -5.1166 | overlap 945456 TAGCAAAACGAAAAA TCACAG TAAA CTGTGT TGCACCTGGCTTAAT VF_0859 944929 - 945654 + | 3-ketoacyl-(acyl-carrier-protein) reductase VF_0860 945651 - 946886 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1087 946934 - 946915 - T 100 -12.2 -5.74288 | opp_overlap 946915 ACAAATAATAAAAAA CCGGTGAA GAAA TTCACCGG TTTTTTTGTGTCTTT TERM 1088 946915 - 946934 + T 100 -12.2 -5.82281 | opp_overlap 946915 ACAAATAATAAAAAA CCGGTGAA GAAA TTCACCGG TTTTTTTGTGTCTTT hslJ 947409 - 946966 - | heat shock protein HslJ TERM 1089 947236 - 947246 + g 70 -5.4 -4.32177 | GCCGATTTCAAGACG TGGA GCT TCCA TTTCTTCTGGAGTAG TERM 1090 947658 - 947624 - R 100 -16 -3.04558 | opp_overlap 947616 947629, overlap 947629 AAAGTACCAGATAGA TTAAAGCCCCGATACT GGT AATATCAGGGCTTTAA AGGGTTTGTTATTTC TERM 1091 947653 - 947629 - R 93 -11.5 -3.91597 | opp_overlap 947616 947629, overlap 947624 ACCAGATAGATTAAA GCCCCGATACT GGT AATATCAGGGC TTTAAAGGGTTTGTT rplY 948003 - 947725 - | 50S ribosomal protein L25 TERM 1092 947767 - 947789 + g 71 -9.8 -2.79492 | opp_overlap 947767, overlap 947766 AACTTTAGGCTTAAA CGCGTGACGT TGA ACGTCTTGCG GTTTAACCTTAACAG TERM 1093 948185 - 948150 - H 100 -20.8 -3.724 | opp_overlap 948140 948139 948153, overlap 948172 AATTTACTAAGAGAA TTTGCTAATCTGGCTT TTAA AAGCCAGATTAGCAAA TCAAATGGAGTTGAT TERM 1094 948468 - 948457 - g 75 -3 -5.31855 | opp_overlap 948457, overlap 948459 GAGCAAGAACAAAAA TTTG GCAA CAAA AGCCAGAGTTTGAAG VF_0863 948201 - 948626 + | hypothetical protein yejH 950368 - 948644 - | ATP-dependet helicase TERM 1095 951872 - 951862 - g 79 -3.2 -5.46698 | TTGAAAATCAAAAAA TCGC AGA GCAA CTCACTCAAGATATT ymdC 950505 - 952052 + | hydrolase VF_0866 952808 - 952134 - | hypothetical protein VF_0867 953482 - 952859 - | putative lipoprotein TERM 1096 953865 - 953851 - H 70 -2.1 -5.31519 | ATAGTTAAAGAAAAA CATCG ATAAA CGATA CAATAGGTGAGTTGC VF_0868 953932 - 954435 + | hypothetical protein TERM 1097 954496 - 954464 - T 100 -15.8 -3.29782 | opp_overlap 954464 954465, overlap 954465 954470 ACATAATATTAGCAA CTCAAATGGTGCGA TACTG TCGCACCATTTGAA TTTGTAGTCTTTCAT TERM 1098 954464 - 954496 + T 100 -14.3 -4.11033 | opp_overlap 954464 954465 954470, overlap 954465 ACATAATATTAGCAA CTCAAATGGTGCGAT ACT GTCGCACCATTTGAA TTTGTAGTCTTTCAT TERM 1099 954495 - 954465 - T 100 -17.1 -2.57146 | opp_overlap 954464 954465, overlap 954464 954470 CATAATATTAGCAAC TCAAATGGTGCGA TACTG TCGCACCATTTGA ATTTGTAGTCTTTCA TERM 1100 954465 - 954495 + T 100 -17.8 -3.05535 | opp_overlap 954465 954464 954470, overlap 954464 CATAATATTAGCAAC TCAAATGGTGCGAT ACT GTCGCACCATTTGA ATTTGTAGTCTTTCA TERM 1101 954490 - 954470 - T 90 -11.2 -3.79043 | opp_overlap 954465 954464, overlap 954465 954464 TATTAGCAACTCAAA TGGTGCGA TACTG TCGCACCA TTTGAATTTGTAGTC VF_0869 954873 - 954580 - | hypothetical protein TERM 1102 954888 - 954918 + r 73 -4.1 -4.86001 | gap 1, overlap 954889 954890 TTGTTGATTTTGAAA TTGTGTTT-GTTCC ACTT GGAGCCAAACACGG TTTTTATACAATGCT VF_0870 955537 - 954965 - | acetyltransferase TERM 1103 955486 - 955511 + g 84 -6.9 -4.93696 | TTATTCTCAAAATTG CCAAATAAACC GACT GGTTGGTTTGG TTTTTGGTGTTTAAA TERM 1104 955551 - 955530 - G 90 -8.8 -5.00616 | opp_overlap 955530 955527 TTGGTGTTTAAAAAA TCACGCAT ATATTG ATGCGTGA TAGGTTTTATTGACA VF_0871 956100 - 955558 - | TetR family transcriptional regulator TERM 1105 956266 - 956294 + r 74 -5.4 -4.77036 | overlap 956267 ATTTGAATAGCTGGG TTATTCGCATCA CGAAA TGATGTGAATAC TTTTTAGTGGTGGGA TERM 1106 956267 - 956293 + r 75 -8.9 -3.4574 | overlap 956266 TTTGAATAGCTGGGT TATTCGCATCA CGAAA TGATGTGAATA CTTTTTAGTGGTGGG VF_0872 957447 - 956359 - | methyl-accepting chemotaxis protein TERM 1107 956774 - 956818 + g 76 -7.3 -4.28548 | gap 1 TCATTTACGATGGTT CCAA-TTTGTGCTGAAGAGG CTGATA CTTCTTCTGCACAGGCTTGG TTTTCATCGATAGAT VF_0873 957779 - 958165 + | hypothetical protein TERM 1108 958241 - 958251 + T 70 -4 -4.92777 | AAAATTCTTCATCAT TACT TAT AGTA TTTTTAGTTAATATT TERM 1109 958411 - 958388 - T 100 -9.6 -5.28778 | AGCACCCACAAAAAA GGGATCTAGC CTAA ACCAGATCCC CCAACATCAAGCCGC TERM 1110 958422 - 958438 + T 100 -9.4 -4.86133 | opp_overlap 958422 ATCCCCCAACATCAA GCCGCA TTCCC TGCGGC TTTTTACTATCTATC TERM 1111 958438 - 958422 - T 79 -9.4 -3.36452 | opp_overlap 958422 ATCCCCCAACATCAA GCCGCA TTCCC TGCGGC TTTTTACTATCTATC secF2 959365 - 958466 - | preprotein translocase subunit SecF secD2 961192 - 959369 - | preprotein translocase subunit SecD TERM 1112 960482 - 960510 + g 80 -4.7 -5.31545 | gap 1 CATGGTTTGAAGGTT TTGCTGTACTGT TAGGTT AC-GTACGGCAA TTTTTTCATCTTCTT TERM 1113 961032 - 961048 + g 73 -6.6 -4.30833 | opp_overlap 961031 961034, overlap 961044 TGTAGTGATACAATC GATGGA ATGTG TCCATC TTTGTTGGTGATTTG VF_0876 961859 - 961323 - | hypothetical protein VF_0877 962851 - 961946 - | LysR family transcriptional regulator emrK 962985 - 964025 + | EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component emrB 964028 - 965629 + | multidrug efflux system protein TERM 1114 965835 - 965807 - g 72 -3.1 -5.07652 | opp_overlap 965813, overlap 965811 965833 GGCGTGAAAACAAAA GTAACATCTGTAA AAG TAACAGATGATTC AACAGTTGAATGGGA rsuA 965702 - 966406 + | 16S rRNA pseudouridylate 516 synthase TERM 1115 966438 - 966461 + F 100 -10.2 -5.72616 | opp_overlap 966438 ATCCAATATTAAAAA CGGCGTGGCA TTTA TGTCTCGCCG TTTTTTTGTGTAAAT TERM 1116 966461 - 966438 - f 90 -8 -4.88228 | opp_overlap 966438 ATCCAATATTAAAAA CGGCGTGGCA TTTA TGTCTCGCCG TTTTTTTGTGTAAAT bcr 966621 - 967826 + | bicyclomycin/multidrug efflux system VF_0882 967827 - 968507 + | hypothetical protein TERM 1117 968518 - 968508 - T 71 -5.4 -4.63993 | AACGTGAAAAAATAA TCGA TTA TCGA GATTGGATGGGCTCT TERM 1118 968526 - 968545 + T 100 -12.2 -5.66229 | ATTATCGAGATTGGA TGGGCTCT TAGT AGAGCCCA TTTTTTATTCTTCCT ybjT 970016 - 968574 - | hypothetical protein TERM 1119 968662 - 968639 - G 74 -3.8 -5.0916 | CTTTGAAGATAAAAA GGTGTGCG GGAAACAT CGCAAACC AATACATTAATCCCC TERM 1120 968821 - 968802 - G 79 -5 -5.09685 | opp_overlap 968802, overlap 968804 TAATAGAGATAAAAA TTCGTTGT TTTC ACAACGGA TCACTTTCCAAGAAT TERM 1121 969811 - 969835 + g 72 -4.3 -4.66746 | opp_overlap 969811 969814 AAATAACCAATATCA CAATCAAACAA GAG TGGTTCGATTG TTGTTTTATTTTCTA VF_0884 970322 - 970993 + | ABC transporter ATP-binding protein TERM 1122 971467 - 971453 - g 76 -4.3 -5.09895 | TATTGAGTTAAAAAA CCAAT CCAAT ATTGG CCCTGTTATTGTTGA VF_0885 970974 - 973427 + | ABC transporter permease protein VF_0886 973427 - 974548 + | hypothetical protein TERM 1123 975431 - 975418 - g 73 -6.7 -4.29326 | CTTAAAGGCAATAAA GGTGA GCGT TCACC ACTAAAACACATGGA nhaA 974713 - 975861 + | pH-dependent sodium/proton antiporter TERM 1124 975892 - 975912 + F 95 -9 -5.40072 | opp_overlap 975892 ATAAGTTTTGATAAA TACCTCGC AAATA GCGGGGTA TTTTTTTGGACAAAA TERM 1125 975955 - 975932 - f 91 -5.2 -5.93809 | TTTGGACAAAAAAAA GCCCAAACAA TAAA TTGAATGGGC AAAAGGAATATAAGG TERM 1126 976674 - 976661 - g 82 -3.8 -5.4251 | opp_overlap 976661 GGTACAGAGAAAAAA CCAG GTACAG CTGG TTGGTATAACTCTGC VF_0888 976415 - 977617 + | trans-2-enoyl-CoA reductase TERM 1127 977836 - 977801 - T 100 -12 -5.00136 | opp_overlap 977806 977835, overlap 977806 AAACAAAAGAGAAAA GAAAACCCCAGAGTGA ATGT TCATTCTGGGGTTTTT TATTGGTTCCAATAA TERM 1128 977831 - 977806 - T 100 -11.9 -5.2894 | opp_overlap 977806, overlap 977801 AAAGAGAAAAGAAAA CCCCAGAGTGA ATGT TCATTCTGGGG TTTTTTATTGGTTCC TERM 1129 977806 - 977831 + T 100 -14.1 -5.5604 | opp_overlap 977801 977806 AAAGAGAAAAGAAAA CCCCAGAGTGA ATGT TCATTCTGGGG TTTTTTATTGGTTCC ybjL 979545 - 977863 - | hypothetical protein TERM 1130 978593 - 978605 + g 77 -7.7 -4.19258 | overlap 978584 GACAGGCGTTTACCA GCGAT ATT ATCGC TTTTAACTACGATCT TERM 1131 979644 - 979663 + r 89 -8.6 -4.27483 | opp_overlap 979644, overlap 979639 AAAATCAAAAAAAAA TCACCGTT TGGG AGCGGTGA TTTAATTTTATAAAT TERM 1132 979663 - 979644 - R 100 -6.4 -6.31682 | opp_overlap 979639 979644 AAAATCAAAAAAAAA TCACCGTT TGGG AGCGGTGA TTTAATTTTATAAAT grxA 979955 - 979692 - | glutaredoxin 1 yebK 980924 - 980067 - | DNA-binding transcriptional regulator HexR TERM 1133 980778 - 980797 + g 71 -6.4 -4.1899 | opp_overlap 980789 AAAACGGTTTACCGT TGGCTCAC TAAC GTCAGCCA TTTTAGCTAAAGTGG TERM 1134 980952 - 981000 + r 79 -9.1 -3.41836 | opp_overlap 980957 980958, overlap 980954 980957 980958 ACATTTTTAATTTGA TATAACCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGATTATC TATTTGAATAAGTAT TERM 1135 980954 - 980998 + r 87 -11.7 -3.27676 | opp_overlap 980957 980958, overlap 980952 980957 980958 ATTTTTAATTTGATA TAACCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGATTA TCTATTTGAATAAGT TERM 1136 980957 - 980995 + r 79 -9 -3.77303 | opp_overlap 980957 980958, overlap 980954 980952 980958 TTTAATTTGATATAA CCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGA TTATCTATTTGAATA TERM 1137 980958 - 980994 + r 86 -12.5 -2.85659 | opp_overlap 980958 980957, overlap 980957 980954 980952 TTAATTTGATATAAC CTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAG ATTATCTATTTGAAT TERM 1138 981115 - 981096 - R 76 -6.5 -4.61633 | opp_overlap 981095 981096 ACAGATCTCTAAAAA CACTTTC AATTTA GAAAGTG ATTTTTCGGTGTAAA TERM 1139 981237 - 981204 - R 100 -9.1 -5.38249 | opp_overlap 981208, overlap 981206 ATGAATTACAAAAAA GATAGGTTGTTTTAC ATTC ATAAAACAACCTATA TGAGGGGATTAGTGA TERM 1140 981235 - 981206 - R 100 -11.7 -4.31563 | opp_overlap 981208, overlap 981204 GAATTACAAAAAAGA TAGGTTGTTTTAC ATTC ATAAAACAACCTA TATGAGGGGATTAGT TERM 1141 981208 - 981233 + r 73 -9.2 -2.87881 | opp_overlap 981206 981204 ATTACAAAAAAGATA GGTTGTTTTA CATTCA TAAAACAACC TATATGAGGGGATTA VF_0892 982889 - 981246 - | glutamate decarboxylase TERM 1142 981872 - 981845 - G 74 -6.3 -4.41633 | opp_overlap 981842 981845 981848, overlap 981842 GATCTTTAAAAATAA CCATACCTGCC CCCATT GGCACGTATAG TTGCTTGTGTGCATC VF_0893 983576 - 983064 - | hypothetical protein ybjE 984612 - 983713 - | transporter TERM 1143 983760 - 983748 - G 73 -7.7 -3.96447 | GCATCAAAAAAGGAA CTGAG AGA CTCAG TATAAAACCACTGAC VF_0895 985626 - 984703 - | hypothetical protein TERM 1144 985245 - 985263 + g 73 -5.4 -4.56736 | ACGCGTTACACTCGC TATTTAAG TCA CTTGAATA TTTTAATTGTTCGAT TERM 1145 985805 - 985788 - H 70 -7.1 -3.89822 | TATTGACGTCATAAA TGAATCT TGTG AGATTCA TCAATGTAATGAGGT tfoX1 986000 - 986629 + | DNA transformation protein TfoX1 (Sxy) TERM 1146 986651 - 986691 + T 100 -6.9 -5.88197 | opp_overlap 986651 TATTTCATAAAAAAA CCTCGTTATACCGAAAC AAATAAA GTTAAGGGATAACGAGG TTTTTTTGTATTTAA TERM 1147 986691 - 986651 - T 93 -6.9 -5.626 | opp_overlap 986651 TATTTCATAAAAAAA CCTCGTTATACCGAAAC AAATAAA GTTAAGGGATAACGAGG TTTTTTTGTATTTAA VF_0897 987269 - 986721 - | hypothetical protein VF_0898 987545 - 988846 + | putative lipoprotein TERM 1148 988867 - 988886 + F 95 -8.6 -5.65513 | opp_overlap 988867 TTATATTTATACAAA TAGCTCAC TTTG GTGGGCTA TTTTTTTAATTAATA TERM 1149 989444 - 989431 - g 72 -3.1 -5.0538 | gap 1, opp_overlap 989431 GTTGATGGTAAAAAA GC-GGT TCA ACCTGC TTCTGAGTGGGCATT serC 989044 - 990126 + | phosphoserine aminotransferase TERM 1150 990156 - 990181 + T 100 -12 -5.55695 | opp_overlap 990156 AACTGATACGAAAAA GCCGATATGA TGATGC TCATATCGGC TTTTTTATATTCTTA TERM 1151 990181 - 990156 - T 100 -12 -4.82154 | opp_overlap 990156 AACTGATACGAAAAA GCCGATATGA TGATGC TCATATCGGC TTTTTTATATTCTTA cydC 991937 - 990216 - | cysteine/glutathione ABC transporter membrane/ATP-binding component cydD 993702 - 991930 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 1152 993814 - 993833 + r 80 -9.3 -3.66654 | opp_overlap 993814 GATGAGCAAAAGAAA CCCGAAG CATTAA CTTCGGG TTTAACGTTAACATA TERM 1153 993833 - 993814 - R 100 -10 -4.73614 | opp_overlap 993814 GATGAGCAAAAGAAA CCCGAAGC ATTA ACTTCGGG TTTAACGTTAACATA trxB 994820 - 993855 - | thioredoxin reductase, FAD/NAD(P)-binding ald 996086 - 994968 - | alanine dehydrogenase lrp 996243 - 996734 + | leucine-responsive transcriptional regulator TERM 1154 996839 - 996870 + F 93 -8 -5.54907 | gap 1, opp_overlap 996842 996845, overlap 996843 996845 GTGATTACTATTAAG TAATGACGAGCGGCG TAG TGCCGCTCGAC-TTG TTTTTATTTTATAGA TERM 1155 996868 - 996842 - f 79 -9.3 -3.41961 | opp_overlap 996839 996843 996845, overlap 996845 ATTACTATTAAGTAA TGACGAGCGGC GTAGT GCCGCTCGACT TGTTTTTATTTTATA TERM 1156 996843 - 996867 + F 100 -13.5 -4.82111 | opp_overlap 996842 996845, overlap 996839 996845 TTACTATTAAGTAAT GACGAGCGGCG TAG TGCCGCTCGAC TTGTTTTTATTTTAT TERM 1157 996865 - 996845 - f 93 -14 -2.86164 | opp_overlap 996843 996839 996845, overlap 996842 ACTATTAAGTAATGA CGAGCGGC GTAGT GCCGCTCG ACTTGTTTTTATTTT TERM 1158 996845 - 996865 + F 95 -14.7 -2.64923 | opp_overlap 996845 996842, overlap 996843 996839 ACTATTAAGTAATGA CGAGCGGCG TAG TGCCGCTCG ACTTGTTTTTATTTT TERM 1159 997563 - 997597 + G 70 -2.8 -5.07652 | overlap 997564 997566 997567 ACTTTATTTACTGGT GTATCTTGGTTAACGA TAG TCGATAACCTAGGTGG TTTTGTTTTAGAAGC TERM 1160 998913 - 998889 - g 78 -7.1 -4.33165 | opp_overlap 998898 CCAAATTTACCAAAA CCAACATCACC AAT GCCGACGTTGG ATTTGCTTTACTCAC ftsK 996957 - 1000391 + | DNA-binding membrane protein required for chromosome resolution and partitioning TERM 1161 1000832 - 1000822 - g 73 -6.8 -4.25283 | ACGGTTTCACCAAAA GCAG ATT CTGC TGTAAAAAGTGAATT lolA 1000417 - 1001013 + | outer-membrane lipoprotein carrier protein TERM 1162 1001077 - 1001095 + G 100 -14.6 -3.21747 | TTAGATTTTTCAGCA GGGGACGA TTA TCGTCCCC TTGCTGCTAGAATGC rarA 1001047 - 1002393 + | recombination factor protein RarA serS 1002515 - 1003822 + | seryl-tRNA synthetase TERM 1163 1003860 - 1003887 + T 100 -14.3 -5.42975 | opp_overlap 1003860 AATAAATAGTAAAAA GCCCCTTTATG CAGAGT CATAAAGGGGC TTTTTGTTTGTCTGC TERM 1164 1003887 - 1003860 - T 100 -14.3 -4.97461 | opp_overlap 1003860 AATAAATAGTAAAAA GCCCCTTTATG CAGAGT CATAAAGGGGC TTTTTGTTTGTCTGC trxC 1004345 - 1003911 - | thioredoxin 2 TERM 1165 1004497 - 1004466 - R 82 -8.9 -4.05926 | opp_overlap 1004473, overlap 1004473 CAATAAATTCAGAAA TAAAAAAGGAGCA AATGAA TGCTCCTTTTTAA CAATATGGTAGGGAT TERM 1166 1004490 - 1004473 - R 93 -7 -5.72622 | opp_overlap 1004473, overlap 1004466 TTCAGAAATAAAAAA GGAGCA AATGAA TGCTCC TTTTTAACAATATGG TERM 1167 1004473 - 1004490 + r 80 -7 -4.61231 | opp_overlap 1004473 1004466 TTCAGAAATAAAAAA GGAGCA AATGAA TGCTCC TTTTTAACAATATGG yciU 1004840 - 1004517 - | dsDNA-mimic protein TERM 1168 1004755 - 1004775 + g 73 -10.5 -2.91593 | overlap 1004754 AAAGCAACATCTGCA GGTTCAAGA TTG TCTTGAGCC ATTTCTAGGAAGATA gsk 1005023 - 1006327 + | inosine/guanosine kinase TERM 1169 1006380 - 1006360 - T 100 -12.6 -5.72254 | opp_overlap 1006360 CCAAACAATAAAAAA CGGAAGCC TCAGT GGCTTCCG TTTTTGTTTAGGTAA TERM 1170 1006360 - 1006380 + T 100 -12.6 -5.30616 | opp_overlap 1006360 CCAAACAATAAAAAA CGGAAGCC TCAGT GGCTTCCG TTTTTGTTTAGGTAA yeaD 1007295 - 1006420 - | hypothetical protein TERM 1171 1007175 - 1007163 - G 86 -7.7 -4.89567 | GCGTAAAAGATAAAA CATGG CCA CCATG AAGAGAAATGGCTGC TERM 1172 1007348 - 1007358 + r 70 -4 -4.88407 | TATTTAATATTCAGA GAAA TAG TTTC TTTTTGATTGAATAG TERM 1173 1007426 - 1007409 - R 90 -8.4 -5.29782 | opp_overlap 1007409 TACAGGTATAAAAAA GGCGAC AATTAA GTCGCC TTTCATTCTTAAAAG TERM 1174 1007409 - 1007426 + r 79 -8.4 -4.07618 | opp_overlap 1007409 TACAGGTATAAAAAA GGCGAC AATTAA GTCGCC TTTCATTCTTAAAAG gapA 1008485 - 1007490 - | glyceraldehyde-3-phosphate dehydrogenase A msrB 1008822 - 1009229 + | methionine sulfoxide reductase B TERM 1175 1009242 - 1009273 + T 86 -10.4 -3.66999 | opp_overlap 1009235 1009249, overlap 1009249 1009270 TAAATCCATATAAAA TAAAAAAGGAGC ACATTTCG GCTCCTTTTTTA TTTACATCAGTAAAT TERM 1176 1009249 - 1009266 + T 85 -4.1 -5.65927 | opp_overlap 1009249 1009235, overlap 1009242 ATATAAAATAAAAAA GGAGC ACATTTCG GCTCC TTTTTTATTTACATC TERM 1177 1009266 - 1009249 - T 91 -4.1 -5.8901 | gap 1, opp_overlap 1009242 1009249, overlap 1009235 ATATAAAATAAAAAA GGAGCACA TTT CG-GCTCC TTTTTTATTTACATC VF_0915 1010130 - 1009288 - | TPR repeat-containing protein TERM 1178 1009753 - 1009733 - G 88 -11.3 -3.51825 | opp_overlap 1009732 1009731 1009737, overlap 1009737 GTACTCCAACGATAA TAAAGAACC TTG GGTTCTTTA GATTCTTTCAATTCG TERM 1179 1009749 - 1009737 - G 80 -7.7 -4.3953 | opp_overlap 1009732 1009731 1009737, overlap 1009733 TCCAACGATAATAAA GAACC TTG GGTTC TTTAGATTCTTTCAA TERM 1180 1009737 - 1009749 + g 73 -7.7 -3.89435 | opp_overlap 1009737 1009733, overlap 1009732 1009731 TCCAACGATAATAAA GAACC TTG GGTTC TTTAGATTCTTTCAA VF_0916 1010251 - 1010538 + | general negative regulator of transcription subunit 1 TERM 1181 1010658 - 1010622 - f 74 -6.7 -4.37658 | opp_overlap 1010617 1010614 1010622 AAGTGGCTTATAAAA TTGTCGATAACCTAACA GTC TAGTAGATTATCGCCAA TTTCATAAATTATAG VF_2596 1010685 - 1010834 + | hypothetical protein VF_0917 1011716 - 1010856 - | cation transporter, voltage-gated ion channel cation transporter TERM 1182 1011952 - 1011966 + H 77 -5.8 -4.74012 | TTTTTGCCGCGTTTA TGTAAT TTT ATTACA TTTTGATTTTCTGCT TERM 1183 1012040 - 1012053 + H 74 -5.3 -4.7173 | opp_overlap 1012051 TTTTATATTAAGTAT GTGAT ATAA ATCAC TTTTTAAATGTGCTA adhE 1012473 - 1014974 + | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase TERM 1184 1015051 - 1015032 - T 100 -12.2 -4.63048 | opp_overlap 1015032 GTGATAAATAAGAAA GCCACCTA ATAT TAGGTGGC TTTTTTGCATCTAGA TERM 1185 1015032 - 1015051 + T 100 -12.2 -5.1287 | opp_overlap 1015032 GTGATAAATAAGAAA GCCACCTA ATAT TAGGTGGC TTTTTTGCATCTAGA VF_0919 1015834 - 1015163 - | short chain dehydrogenase VF_0920 1016563 - 1016057 - | hypothetical protein TERM 1186 1016329 - 1016343 + g 71 -7.2 -3.92373 | GAGAATAACTTTCTT CATTAC TAC GTAATG TTTGTGCATCAGCTA TERM 1187 1016374 - 1016392 + g 91 -6 -5.38249 | ACTGAAAGCGTTGAC GTAACAGA TCT TCAGTTAC TTTTTTCTCGTTAAT TERM 1188 1016720 - 1016701 - R 84 -5.7 -5.5074 | opp_overlap 1016701 GAAGGTAATAAAAAA GGCCAGT ATAAAA ACTGACC TTTGAAGTGTTTAGC TERM 1189 1016732 - 1016750 + r 76 -7.4 -4.05446 | GACCTTTGAAGTGTT TAGCCGCA AGA TGCGTCTA TTTATAATTCGAAAA sodB 1017350 - 1016766 - | superoxide dismutase, Fe grxD 1017585 - 1017920 + | glutaredoxin 4 TERM 1190 1017956 - 1017937 - T 100 -12.2 -5.30189 | opp_overlap 1017937 CAGAATATTAAAAAA GCCACGTT ATTT AACGTGGC TTTTTTTTATCTTTA TERM 1191 1017937 - 1017956 + T 100 -12.2 -6.15717 | opp_overlap 1017937 CAGAATATTAAAAAA GCCACGTT ATTT AACGTGGC TTTTTTTTATCTTTA VF_0923 1019288 - 1017969 - | response regulator receiver domain-containing protein TERM 1192 1019393 - 1019426 + r 87 -6.7 -5.47218 | opp_overlap 1019401, overlap 1019401 TTTTTGATCTTTATG CAAAAAAACGGCAGA AACA TCTGCCGTTTTAACG TTTTTTTAAATAAAA TERM 1193 1019401 - 1019418 + r 100 -11.3 -4.35095 | opp_overlap 1019401, overlap 1019393 CTTTATGCAAAAAAA CGGCAGA AACA TCTGCCG TTTTAACGTTTTTTT TERM 1194 1019418 - 1019401 - R 100 -11.3 -5.47218 | opp_overlap 1019401 1019393 CTTTATGCAAAAAAA CGGCAGA AACA TCTGCCG TTTTAACGTTTTTTT VF_0924 1020786 - 1019458 - | transport protein rnt 1021501 - 1020833 - | ribonuclease T TERM 1195 1020907 - 1020929 + g 71 -4.8 -4.62984 | opp_overlap 1020907 1020909, overlap 1020909 TCCATTTATTCACAA TACGACAGAA TAG TTCTGCCGTC TTTTCTGTATCATAA TERM 1196 1020927 - 1020909 - G 73 -9.6 -3.254 | opp_overlap 1020907 1020909, overlap 1020907 CATTTATTCACAATA CGACAGAA TAG TTCTGCCG TCTTTTCTGTATCAT TERM 1197 1020909 - 1020927 + g 71 -7.4 -3.92276 | opp_overlap 1020909 1020907, overlap 1020907 CATTTATTCACAATA CGACAGAA TAG TTCTGCCG TCTTTTCTGTATCAT motY 1021688 - 1022566 + | flagellar motor protein MotY TERM 1198 1022613 - 1022594 - T 100 -9.3 -4.93898 | opp_overlap 1022594 ACATCATCATAAAAA GACGCCT CATAGT AGGCGTC TTTTTTATTGTAATT TERM 1199 1022594 - 1022613 + T 100 -9.3 -5.59534 | opp_overlap 1022594 ACATCATCATAAAAA GACGCCT CATAGT AGGCGTC TTTTTTATTGTAATT VF_0927 1023052 - 1022618 - | hypothetical protein TERM 1200 1023144 - 1023160 + r 80 -5.1 -5.21709 | opp_overlap 1023136 1023144 TAATGTATAAAAAAA CCTGC CTAGATC GCAGG TTTTTTACTGTAAAG TERM 1201 1023160 - 1023144 - R 86 -5.1 -5.66684 | opp_overlap 1023144, overlap 1023136 TAATGTATAAAAAAA CCTGC CTAGATC GCAGG TTTTTTACTGTAAAG gloA 1023610 - 1023194 - | glyoxalase I, Ni-dependent nth 1024259 - 1023624 - | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) rnfE 1025013 - 1024330 - | SoxR-reducing system protein RsxE TERM 1202 1025036 - 1025054 + r 72 -8.2 -3.38966 | overlap 1025039 TCTCACAATTTAATG GAAGAGTT TGC AGCTCTTC TTGATGTGTCTTATA rnfG 1025645 - 1025013 - | electron transport complex protein RnfG rnfD 1026645 - 1025650 - | inner membrane oxidoreductase (Rnf/Rsx reducing system) rnfC 1029191 - 1026708 - | electron transport complex protein RnfC TERM 1203 1026769 - 1026782 + g 93 -8.1 -5.47218 | opp_overlap 1026766 GCACGAGCAATAGCG GCAGC GACG GCTGC TTTTTTTGGATCAGC TERM 1204 1026898 - 1026911 + g 81 -5.9 -5.0538 | opp_overlap 1026895 GCACGAGCAATAGCG GCGGC GACG GCTGC TTTTTTCGGATCAGC TERM 1205 1027027 - 1027040 + g 81 -5.9 -5.0538 | opp_overlap 1027024 GCACGAGCAATAGCG GCGGC GACG GCTGC TTTTTTCGGATCAGC TERM 1206 1027156 - 1027169 + g 88 -8.1 -5.0538 | GCACGAGCGATAGCG GCAGC GACG GCTGC TTTTTTCGGATCAGC TERM 1207 1027285 - 1027298 + g 81 -5.9 -5.0538 | opp_overlap 1027282 GCACGAGCAATAGCG GCGGC GACG GCTGC TTTTTTCGGATCAGC TERM 1208 1027471 - 1027481 + g 81 -5.4 -5.10033 | overlap 1027458 GCTGTGGTTTCTTCC GCAA GTT TTGC TTTTCTTTCTCTTGC TERM 1209 1028164 - 1028193 + g 72 -9.3 -3.41126 | opp_overlap 1028164 1028168, overlap 1028168 GTAAAGCCCATTAAT GAACCGCCCATGA TGAT TCGTGGGTGTTTC TTATCAGCTTTATAG TERM 1210 1028168 - 1028189 + g 85 -8.7 -4.33851 | opp_overlap 1028164 1028168, overlap 1028164 AGCCCATTAATGAAC CGCCCATGA TGAT TCGTGGGTG TTTCTTATCAGCTTT rnfB 1029779 - 1029195 - | electron transport complex protein RnfB TERM 1211 1029736 - 1029711 - G 73 -8.4 -3.68619 | TTTAATTGATGCAAA CCCCAGTATT AAGCCA AATACTAGGG CAAGAGCAGCAATAG rnfA 1030363 - 1029782 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 1212 1030488 - 1030469 - H 100 -10 -6.23209 | opp_overlap 1030469 TTAAGTAAAAAAAAA GCCTCGTC GTTA GACAAGGC TTTTAAAAGTGGCTC TERM 1213 1030469 - 1030488 + H 78 -7.8 -4.11692 | opp_overlap 1030469 TTAAGTAAAAAAAAA GCCTCGTC GTTA GACAAGGC TTTTAAAAGTGGCTC TERM 1214 1030862 - 1030890 + H 83 -10.5 -3.17608 | overlap 1030860 GATAAGGGTTGTGGG TAGTTATCCAC TAAAACT GTGGATAACTA TGTTAATGGATCTTT uvrB 1031186 - 1033216 + | excinuclease ABC subunit B TERM 1215 1033271 - 1033242 - f 93 -7.9 -5.69473 | opp_overlap 1033245, overlap 1033245 TATAGCAGAAAAAAA GAAGCCAACCG CAATATCC CGGTTGGCTTT ATTGTTCATGTGAAA TERM 1216 1033245 - 1033268 + F 100 -9.6 -4.5032 | opp_overlap 1033242 1033245 AGCAGAAAAAAAGAA GCCAACCG CAATATCC CGGTTGGC TTTATTGTTCATGTG TERM 1217 1033268 - 1033245 - f 100 -9.6 -4.9041 | opp_overlap 1033245, overlap 1033242 AGCAGAAAAAAAGAA GCCAACCG CAATATCC CGGTTGGC TTTATTGTTCATGTG TERM 1218 1034510 - 1034529 + G 77 -7.9 -4.29929 | TCCTTGGGCATTTTT CTCACGA GGAAGG TCGTGAG TTTATTACATTTAGT luxO 1033510 - 1034940 + | autoinducer repressor protein LuxO luxU 1034930 - 1035286 + | autoinducer phosphorelay protein LuxU ybhK 1036153 - 1035275 - | transferase TERM 1219 1036593 - 1036610 + G 73 -8.5 -3.7456 | TACTTACGATTATCA GTTACAG ATGT CTGTAAC TTTAAATGTACTTAT moaA 1036536 - 1037525 + | molybdenum cofactor biosynthesis protein A TERM 1220 1037576 - 1037561 - g 72 -9 -3.2794 | TTTTACTCATATTAA TGCCTC TGGT GAGGCA AACATGGTTGATGTT TERM 1221 1037761 - 1037743 - g 82 -3.8 -5.41746 | opp_overlap 1037744 1037745, overlap 1037745 AAGCGGCCAAAAAAA CATGGGAT TTA ATCCCACT TTGTCATCCTTTATT TERM 1222 1037759 - 1037745 - g 85 -8.6 -4.34482 | opp_overlap 1037745 1037744, overlap 1037743 GCGGCCAAAAAAACA TGGGAT TTA ATCCCA CTTTGTCATCCTTTA moaC 1037538 - 1038017 + | molybdenum cofactor biosynthesis protein C moaD 1038014 - 1038259 + | molybdopterin synthase small subunit moaE 1038261 - 1038707 + | molybdopterin synthase, large subunit TERM 1223 1038745 - 1038770 + T 100 -11.9 -5.30189 | opp_overlap 1038745 CGGTATAAAGAAAAA GGGAAGATAGC ATAA GCTCTCTTCCC TTTTTTAATGTTATA TERM 1224 1038770 - 1038745 - T 100 -11.9 -5.38054 | opp_overlap 1038745 CGGTATAAAGAAAAA GGGAAGATAGC ATAA GCTCTCTTCCC TTTTTTAATGTTATA TERM 1225 1038782 - 1038810 + T 70 -6.9 -3.73122 | gap 1, opp_overlap 1038788, overlap 1038776 1038788 TCCCTTTTTTAATGT TATAGACCCTAC AAACAA GTAGGG-CTATA TATTATTTGTTATAA VF_0944 1039778 - 1038813 - | glutathione synthase/ribosomal protein S6 modification glutaminyl transferase VF_0945 1041290 - 1039782 - | hypothetical protein TERM 1226 1041343 - 1041382 + r 76 -7.4 -3.9392 | gap 1, opp_overlap 1041342 ATAATTGTAATTCAT GCGGTAATTTATGCTACTA AGA TA-TTGAATAAATTACCGC TTATTTGAGGTAGGA VF_0946 1042169 - 1041399 - | ATP-dependent Zn protease TERM 1227 1042237 - 1042219 - R 83 -8.1 -4.4204 | AATAACGATAATAAA TGGGAGC GAATA GCCCCCA AATGTTAAAGTTTAG cmoB 1043223 - 1042249 - | S-adenosyl-L-methionine-dependent methyltransferase TERM 1228 1043068 - 1043078 + g 93 -6.8 -5.41746 | GATATTATCAGCGCA TCCC TCT GGGA TTTTTTTCAACGCTT VF_0948 1043988 - 1043260 - | methyltransferase TERM 1229 1044335 - 1044313 - H 72 -4.9 -4.8269 | opp_overlap 1044313 TAGAATTATGAAAAA TGCAGCA CTCCTTTTT TGCTGCA TTTACTATTGAACAT TERM 1230 1046025 - 1046015 - g 73 -5.4 -4.52589 | opp_overlap 1046015 1046019 TTGTGGTACAGAAAA CATC CGT GATG TTATCGCGTTCCCTA aspS 1044375 - 1046150 + | aspartyl-tRNA synthetase TERM 1231 1046169 - 1046203 + F 80 -10.3 -2.99545 | gap 1, opp_overlap 1046176, overlap 1046176 GCGTTTAACTCTTTG TA-AAAAATGCCCGTA TTTA TGCGGGCATTTTTGTA TCTATACTATGTAAA TERM 1232 1046176 - 1046195 + F 100 -10 -5.07275 | opp_overlap 1046176, overlap 1046169 ACTCTTTGTAAAAAA TGCCCGTA TTTA TGCGGGCA TTTTTGTATCTATAC TERM 1233 1046195 - 1046176 - f 88 -7.8 -5.00884 | opp_overlap 1046176 1046169 ACTCTTTGTAAAAAA TGCCCGTA TTTA TGCGGGCA TTTTTGTATCTATAC TERM 1234 1046536 - 1046524 - g 88 -7.7 -5.05782 | ATTTATGTCAAAAAA TGCTG ACT CAGCA TTAAAGCTTGGTCAA ruvC 1046303 - 1046824 + | Holliday junction resolvase TERM 1235 1046866 - 1046881 + F 78 -7.6 -4.2602 | TTCTCATTTCTTTTA CTGGAT ATCT ATCCAG TTCTTTATTACTATC ruvA 1046930 - 1047553 + | Holliday junction DNA helicase motor protein ruvB 1047581 - 1048594 + | Holliday junction DNA helicase B TERM 1236 1048679 - 1048658 - f 70 -7.3 -3.76952 | opp_overlap 1048659, overlap 1048659 CTGAGTTAATTGAAA GCGAGTGAT CAAA ATCACTCGT TTTTTCGTATATGGA TERM 1237 1048659 - 1048678 + F 100 -10.8 -5.24989 | opp_overlap 1048658 1048659 TGAGTTAATTGAAAG CGAGTGAT CAAA ATCACTCG TTTTTTCGTATATGG TERM 1238 1048678 - 1048659 - f 81 -10.8 -2.8585 | opp_overlap 1048659, overlap 1048658 TGAGTTAATTGAAAG CGAGTGAT CAAA ATCACTCG TTTTTTCGTATATGG cydA 1048973 - 1050562 + | cytochrome d terminal oxidase, subunit I TERM 1239 1051444 - 1051478 + G 70 -8.7 -3.43553 | gap 1, overlap 1051447 GCAAATATTGGCGGT CTTGCGTTC-TTAAGC TCAA GCTTAACGAACGCTGG TGTTATCTTAACTTC TERM 1240 1051447 - 1051475 + G 80 -11.2 -2.85947 | gap 1, overlap 1051444 AATATTGGCGGTCTT GCGTTC-TTAAGC TCAA GCTTAACGAACGC TGGTGTTATCTTAAC cydB 1050580 - 1051716 + | cytochrome d terminal oxidase, subunit II ybgT 1051729 - 1051836 + | cyd operon protein YbgT VF_0956 1051829 - 1052131 + | hypothetical protein TERM 1241 1052173 - 1052202 + F 100 -13.1 -6.10489 | AAACATAATATTGAG TGGTTTGTTACTT ATTT AAGTGACAAACCA TTTTTTTTTACGATT TERM 1242 1052676 - 1052686 + G 75 -5.4 -4.77173 | opp_overlap 1052670 TTATGAAACCAACGG CGAT CCC ATCG TTTATTTTATCGGAG ybgC 1052309 - 1052719 + | acyl-CoA thioesterase tolQ 1052709 - 1053395 + | membrane spanning protein in TolA-TolQ-TolR complex tolR 1053395 - 1053841 + | membrane spanning protein in TolA-TolQ-TolR complex TERM 1243 1054195 - 1054179 - g 86 -4.3 -5.47159 | overlap 1054180 GTTCAAGAGAAAAAA GCCGCTC GTC AAGCGGA AGAAGAACGCAAAAA TERM 1244 1054194 - 1054180 - g 73 -7.8 -3.87211 | overlap 1054179 TTCAAGAGAAAAAAG CCGCTC GTC AAGCGG AAGAAGAACGCAAAA TERM 1245 1054357 - 1054341 - g 87 -5.1 -5.38054 | GCGGATAAAGAAAAA GCAGC GAAAGAG GCTGC TAAGAAAGCGCAATT tolA 1053858 - 1054898 + | membrane anchored protein in TolA-TolQ-TolR complex tolB 1054909 - 1056261 + | translocation protein TolB pal 1056297 - 1056863 + | peptidoglycan-associated outer membrane lipoprotein ybgF 1056889 - 1057647 + | hypothetical protein TERM 1246 1057682 - 1057696 + F 100 -11.4 -5.64421 | opp_overlap 1057682 TTTTTAAAACATAAA GGAGCC TAA GGCTCC TTTTTTATTTCCCCT TERM 1247 1057696 - 1057682 - f 100 -11.4 -4.45168 | opp_overlap 1057682 TTTTTAAAACATAAA GGAGCC TAA GGCTCC TTTTTTATTTCCCCT nadA 1057779 - 1058828 + | quinolinate synthetase TERM 1248 1058844 - 1058882 + T 100 -14.1 -5.27023 | opp_overlap 1058853, overlap 1058845 TGCGATAAATGTTTT ATATAAAAATGGCGACC AGTGC GGTCGCCATTTTTGTAA TTTTATTTTTGGACT TERM 1249 1058845 - 1058881 + T 100 -17.6 -3.74587 | opp_overlap 1058853, overlap 1058844 GCGATAAATGTTTTA TATAAAAATGGCGACC AGTGC GGTCGCCATTTTTGTA ATTTTATTTTTGGAC TERM 1250 1058873 - 1058853 - T 100 -13.3 -4.96848 | opp_overlap 1058845 1058844 TGTTTTATATAAAAA TGGCGACCA GTG CGGTCGCCA TTTTTGTAATTTTAT VF_0966 1059492 - 1058902 - | hypothetical protein TERM 1251 1059312 - 1059335 + g 73 -6.8 -4.15044 | opp_overlap 1059328 CATAAGCTTCTAGAT CTTCTGCATT AGTA AATGGAGAAG TTTCTTCACCACCCC ygaW 1059803 - 1060255 + | inner membrane protein TERM 1252 1060282 - 1060303 + F 100 -9.5 -5.72622 | opp_overlap 1060282 TATGTTATAGATAAA GCCAGCATA TAAT TATGTTGGC TTTTTTGTTTATAAC TERM 1253 1060303 - 1060282 - f 75 -7.3 -4.13246 | opp_overlap 1060282 TATGTTATAGATAAA GCCAGCATA TAAT TATGTTGGC TTTTTTGTTTATAAC TERM 1254 1060530 - 1060551 + F 100 -12.3 -4.86133 | ACCGCCACATTTTAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATCTATA VF_0968 1061178 - 1062233 + | beta-lactamase family protein TERM 1255 1062392 - 1062404 + F 71 -7.7 -3.68341 | overlap 1062385 1062385 1062402 TTTGATTTGCGGCCG TAGGC GGC GCCTA TTGTTCAATAGCATT VF_0969 1062688 - 1063074 + | potential redox protein VF_0970 1063106 - 1063816 + | C factor cell-cell signaling protein VF_0971 1064022 - 1065380 + | GTP-binding protein HflX TERM 1256 1065421 - 1065442 + F 88 -7.3 -4.96106 | opp_overlap 1065421 GCCTATTTAAGTTAA GCCTTAGCA GAAA TGTTGAGGC TTTTTCGTATTTATA rpoE2 1065557 - 1066102 + | RNA polymerase sigma factor SigZ TERM 1257 1066128 - 1066152 + F 100 -10.2 -4.15143 | TTTTTTTCAACTGGA CGGTAAATAA ACGCA TTATTTACCG TTTGTCTAATTACTT gshA2 1066259 - 1067857 + | glutamate--cysteine ligase TERM 1258 1067922 - 1067947 + G 85 -9.1 -4.29929 | gap 1 CGCCAGTACATTATC GCCATCA-TTGC ATT GCAAGTGGTGGC TTTATTAAGTTTGGT TERM 1259 1068349 - 1068362 + G 71 -6.7 -4.02315 | GTGAGCTTACTGCAG TGGCA TTAT TGCCA TTTCCATTTTTGGTT mdlA 1067862 - 1069661 + | multidrug ABC transporter ATP-binding protein mdlB 1069654 - 1071471 + | multidrug ABC transporter ATP-binding protein VF_0976 1071496 - 1072956 + | glutathione synthetase TERM 1260 1073030 - 1073006 - f 70 -2.2 -5.26918 | gap 1, overlap 1073008 1073009 ATAGCTCACAAAAAA TACGAGTCTCA ATTG TG-GACTCACA CTCAGTTTATGCATT VF_2598 1073086 - 1073319 + | hypothetical protein TERM 1261 1073445 - 1073455 + G 72 -3.2 -5.06414 | AGAAATCCGTTCTAT TCGA GAT TCGG TTTTTATTCAAGAGC VF_0977 1073386 - 1073808 + | acetyltransferase TERM 1262 1073822 - 1073848 + T 85 -8.9 -4.21141 | opp_overlap 1073822 AGTCAATTGTTTAAA GGTTCTTATTA AAAAG TGATAAGAACC TTTCCTTTATTAACC qor 1074810 - 1073830 - | quinone oxidoreductase, NADPH-dependent TERM 1263 1074897 - 1074918 + r 88 -7.3 -4.87626 | opp_overlap 1074897 ATATCTATTAAAAAA GCACAACAT ACTT ATGCTGTGC TTTTTAGTATTCAAG TERM 1264 1074918 - 1074897 - R 100 -9.5 -5.17353 | opp_overlap 1074897 ATATCTATTAAAAAA GCACAACAT ACTT ATGCTGTGC TTTTTAGTATTCAAG VF_0979 1075259 - 1074942 - | hypothetical protein ycaD 1076483 - 1075323 - | transporter TERM 1265 1075616 - 1075597 - G 71 -6.4 -4.14945 | CCAAGAAGAACTAAA GCTACTGC TAGT ACAGCAGC GTGATCACTCAATGC TERM 1266 1076988 - 1077005 + G 70 -3.5 -4.91109 | gap 1 TTTTTATTCAAAGTG GTAAGACG CAA CGT-TTAC TTTTTCTAATGGGAA VF_0981 1076762 - 1077358 + | hypothetical protein TERM 1267 1077367 - 1077394 + T 100 -12.2 -5.25803 | opp_overlap 1077365 AGCTTGATAAGGATT GAGCAGTATTTA AATA TGAATACTGCTC TTTTTTATACAGATT yigM 1078265 - 1077408 - | inner membrane protein TERM 1268 1078194 - 1078179 - G 73 -5.4 -4.58424 | CATTAGCACAGAAAA CCAAGC ATCA ACTTGG CCAGCTAAATATACG TERM 1269 1078359 - 1078344 - R 100 -9 -5.7827 | opp_overlap 1078340 1078337 1078344 AAGACAAATAAAAAA GGCTGA AGAG TCAGCC TTAATTATTTCTAGA TERM 1270 1078344 - 1078359 + r 77 -9 -3.65699 | opp_overlap 1078344, overlap 1078340 1078337 AAGACAAATAAAAAA GGCTGA AGAG TCAGCC TTAATTATTTCTAGA VF_0983 1078748 - 1078386 - | putative lipoprotein VF_0984 1079165 - 1078776 - | putative lipoprotein TERM 1271 1079509 - 1079529 + G 72 -3.3 -5.05577 | overlap 1079511 CTTTTATTTCGTTAA TGCCGATTG CTT TAATTGGTA TTTTTACTTTGGTTT TERM 1272 1081779 - 1081757 - g 70 -9.3 -3.18582 | CAGTTTATTTACCAA TGATCAAAG TGAAT CTTTGATCA AAGCGATTATTGCTA VF_0985 1079463 - 1081946 + | GGDEF domain-containing protein TERM 1273 1082006 - 1081974 - T 95 -8.5 -5.30189 | opp_overlap 1081978, overlap 1081978 TAGAATATTAAAAAA GAAAGAGCAGTGATA ATA CATCGCTGCTCTTTT TTATTAAGTGTAATT TERM 1274 1082002 - 1081978 - T 100 -9.3 -5.10526 | opp_overlap 1081978, overlap 1081974 ATATTAAAAAAGAAA GAGCAGTGATA ATA CATCGCTGCTC TTTTTTATTAAGTGT TERM 1275 1081978 - 1082002 + T 100 -10.8 -5.49234 | opp_overlap 1081978 1081974 ATATTAAAAAAGAAA GAGCAGTGAT AATAC ATCGCTGCTC TTTTTTATTAAGTGT VF_0986 1085192 - 1082031 - | chitodextrinase TERM 1276 1082593 - 1082603 + g 70 -5.4 -4.32201 | TGACCTGTGTTGTTT GTGA AAG TCAC TTTTGGATTAATTGG TERM 1277 1085282 - 1085271 - H 93 -3 -6.0427 | opp_overlap 1085271 AGGATATAAAAAAAA TTCT GCTA AGAA TGATTTATAAATTAC TERM 1278 1085449 - 1085472 + H 77 -3.2 -5.48623 | overlap 1085447 TAAATTTTATATTCA CCATTAAGGT GTTG AATTTAATGG TTTTTCTTTGTGTTT TERM 1279 1085522 - 1085564 + H 70 -3.9 -4.86731 | gap 1, opp_overlap 1085528 1085531, overlap 1085527 1085528 1085531 AGATATACGCTTTAG CTATAA-TAATTTAGATAAT TTTC ATTATTTAAATTAATTATCG TTTTATTTAAAGAGC TERM 1280 1086078 - 1086100 + G 74 -6.4 -4.33165 | opp_overlap 1086077 1086078 1086080, overlap 1086082 CGTCAGGATCTAAAT GATTTAGAAA GAA TTTCTCAATC TTTTGATGAATTTCA VF_0987 1085721 - 1087673 + | methyl-accepting chemotaxis protein TERM 1281 1087700 - 1087727 + F 100 -10 -5.7946 | opp_overlap 1087699 1087700 CATCATAAAACTAAG TGGGTGAGAAAT AATT ATTTCTTGCCCA TTTTTTTATTAAGAA VF_0988 1088147 - 1088896 + | hypothetical protein TERM 1282 1089129 - 1089143 + G 100 -10 -5.93252 | opp_overlap 1089129 TTACATTTATATTAA TCGGAG CTA CTCCGA TTTTTTATTTTTGGA TERM 1283 1089143 - 1089129 - g 77 -10 -3.28912 | opp_overlap 1089129 TTACATTTATATTAA TCGGAG CTA CTCCGA TTTTTTATTTTTGGA mifA 1089083 - 1090978 + | diguanylate cyclase (GGDEF), inhibitor of flagellar motility VF_0990 1091938 - 1090979 - | serine/threonine protein kinase VF_0991 1092606 - 1091935 - | protein phosphatase 2C TERM 1284 1092281 - 1092260 - G 72 -8.7 -3.45634 | AAATAACATCGAGAA TCACCTGCC CATA GACAGGCGA TATGACCATTATGAG icmF 1096124 - 1092603 - | secretion protein IcmF TERM 1285 1093091 - 1093104 + g 71 -3.8 -4.96468 | opp_overlap 1093091 ATAGCCCTAATGAAC GTCC GTGTAA GGAC TTTTGTTTGAATTTC TERM 1286 1094559 - 1094573 + g 71 -6.4 -4.19704 | opp_overlap 1094550, overlap 1094557 CGCAAACTCATCTGT GAGGGT TTC ACTCTC TTTTGAATACACTTG TERM 1287 1095780 - 1095806 + g 73 -2.3 -5.27023 | gap 1 ATATAGCCCAGCACG CTTGATTGTTGC AATT GCAGCT-TCAAG TTTTGTTTTTAGAAT VF_0994 1096968 - 1096135 - | OmpA family protein VF_0995 1098292 - 1096970 - | hypothetical protein TERM 1288 1098313 - 1098334 + r 73 -4.4 -4.855 | TATCCTCTAAATTCG CGCATTAC TGCTTT GTGGTGCG TTCTTTTTCTTTTTC VF_0996 1098795 - 1098304 - | lipoprotein VF_0997 1100142 - 1098832 - | phospho-specific protein-protein interaction motif-containing protein VF_2600 1100274 - 1100146 - | hypothetical protein VF_0998 1101845 - 1100277 - | transcriptional regulator VF_0999 1104433 - 1101851 - | ATP-dependent protease subunit VF_1000 1105470 - 1104430 - | quinoprotein dehydrogenase TERM 1289 1105266 - 1105256 - GR 70 -5.4 -4.32034 | TCACGAGGAGCAAAA CCTT GTG AAGG ATTCGCTACAAATTG VF_1001 1107185 - 1105434 - | hypothetical protein TERM 1290 1106388 - 1106431 + gr 76 -9.8 -2.89564 | gap 1, opp_overlap 1106397, overlap 1106383 1106381 1106397 GACATATTTACACCC TTGACTAAACTGAGCTGGCCA AAC TGGTAA-CTCAGTTAAGTCAA TGTAGTAATATTTTT TERM 1291 1106617 - 1106607 - GR 73 -5.4 -4.62168 | ATCCAAAGCACAAAA CTCA GCT TGAG TAGTGGAAGAGCATA VF_1002 1107607 - 1107182 - | hypothetical protein VF_1003 1109172 - 1107697 - | hypothetical protein VF_1004 1109676 - 1109176 - | putative cytoplasmic protein VF_1005 1111242 - 1109692 - | hypothetical protein VF_1006 1111671 - 1111465 - | hypothetical protein VF_1007 1112215 - 1111664 - | primosomal replication protein N' TERM 1292 1111725 - 1111735 + g 72 -3.2 -5.1244 | overlap 1111718 ATTGCTTCTTTACAG CGTT GTA AGCG TTTTTCTGTTGCTAG TERM 1293 1111741 - 1111753 + g 78 -4.1 -5.20333 | GTTGTAAGCGTTTTT CTGTT GCT AGCAG TTTTTGTTGTAGATC yfcA 1112996 - 1112226 - | inner membrane protein dinG 1115149 - 1113065 - | ATP-dependent DNA helicase DinG VF_1010 1115586 - 1116692 + | hypothetical protein TERM 1294 1116742 - 1116723 - f 89 -12.2 -3.30554 | opp_overlap 1116723 TCAAGTAATTATTAA GCCAGTCA TATT TGACTGGC TTTTTTTGTTTTTAT TERM 1295 1116723 - 1116742 + F 100 -12.2 -6.23317 | opp_overlap 1116723 TCAAGTAATTATTAA GCCAGTCA TATT TGACTGGC TTTTTTTGTTTTTAT VF_1011 1117330 - 1118388 + | hypothetical protein TERM 1296 1118420 - 1118437 + F 100 -11.3 -5.83822 | opp_overlap 1118420, overlap 1118436 AGAATAGATTATTAA GCCAGTC ATTT GACTGGC TTTTTTTTGCCTGTA TERM 1297 1118437 - 1118420 - f 87 -11.3 -3.28405 | opp_overlap 1118420 1118436 AGAATAGATTATTAA GCCAGTC ATTT GACTGGC TTTTTTTTGCCTGTA hisL 1118585 - 1118632 + | his operon leader peptide TERM 1298 1118700 - 1118725 + F 100 -11.2 -5.48054 | opp_overlap 1118695 1118696 GAATAAAAATTCTAA CCCTCGGAAG GTCAAA CTTCTGAGGG TTTTTTCGTTTTAGT hisG 1118853 - 1119749 + | ATP phosphoribosyltransferase hisD 1119755 - 1121074 + | histidinol dehydrogenase hisC 1121084 - 1122124 + | histidinol-phosphate aminotransferase TERM 1299 1122293 - 1122319 + F 77 -10.3 -2.57931 | gap 1, overlap 1122292 ATTGGTATATGTTAT CCCCAAG-CTTA GGAA TAAGGCTTGGGG CTTATCAAGAATAAA hisB 1122362 - 1123435 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 1123444 - 1124058 + | imidazole glycerol phosphate synthase subunit HisH TERM 1300 1124264 - 1124274 + G 73 -6.8 -4.18042 | AATACAAAGTTGATC CTGC CGA GCAG TTTAATTTGTATCAC hisA 1124173 - 1124910 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisF 1124892 - 1125665 + | imidazole glycerol phosphate synthase subunit HisF hisI 1125662 - 1126282 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 1301 1126291 - 1126262 - f 78 -7.9 -4.25056 | GATGTGATTAATAAA TTGAAAGAGCGTC ATAA GTAGCTCTTTCAA TTGAACAGTAACAAA TERM 1302 1126333 - 1126308 - f 100 -11.9 -4.78753 | opp_overlap 1126311, overlap 1126311 TGAACAGTAACAAAA TAACGCCGATC ACCT GATCGGCGTTT TTATTGGAATTGAGT TERM 1303 1126311 - 1126330 + F 100 -13.6 -5.10208 | opp_overlap 1126308 1126311 ACAGTAACAAAATAA CGCCGATC ACCT GATCGGCG TTTTTATTGGAATTG TERM 1304 1126330 - 1126311 - f 100 -13.6 -4.47491 | opp_overlap 1126311, overlap 1126308 ACAGTAACAAAATAA CGCCGATC ACCT GATCGGCG TTTTTATTGGAATTG VF_1020 1126391 - 1127077 + | 23S rRNA and tRNA pseudouridine synthase (RluA-like) VF_1021 1127074 - 1128024 + | methyltransferase TERM 1305 1128047 - 1128075 + T 100 -14.7 -5.68438 | opp_overlap 1128047 AGTTTGATACAAAAA GCCCTTCTCATCA TGT TGATGAAAAGGGC TTTTTTGTTTGGTGA TERM 1306 1128075 - 1128047 - T 100 -16.9 -4.9725 | opp_overlap 1128047 AGTTTGATACAAAAA GCCCTTCTCATCA TGT TGATGAAAAGGGC TTTTTTGTTTGGTGA VF_1022 1128496 - 1128098 - | hypothetical protein yciI 1128824 - 1128522 - | YciI-like protein TERM 1307 1128896 - 1128876 - R 84 -3.9 -5.67063 | TTCATCATAAAAAAA GCCCCAGTC ATA AACCAGAGC TTTTTGAAAAATAAT yciA 1129360 - 1128929 - | hydrolase TERM 1308 1129395 - 1129413 + r 83 -10.3 -3.33605 | opp_overlap 1129395, overlap 1129388 TTACCACATAAAAAA GCCGTGT TGTAT ACACGGC TTAATCATTATCTTT TERM 1309 1129413 - 1129395 - R 100 -10.3 -5.39721 | opp_overlap 1129395 1129388 TTACCACATAAAAAA GCCGTGT TGTAT ACACGGC TTAATCATTATCTTT yciB 1129978 - 1129433 - | intracellular septation protein A TERM 1310 1130109 - 1130088 - R 86 -5.9 -5.55664 | opp_overlap 1130088 CGATGATCAAAAAAA GGCCAAT GTGAAATA ATTGGCC TTGTTGATTTAAATT gltP 1131404 - 1130148 - | glutamate/aspartate:proton symporter TERM 1311 1130612 - 1130624 + g 91 -7.7 -5.26875 | overlap 1130599 ATGCTGTTGAAAGTG CCACA GCT TGTGG TTTTTTCATTGCAAC TERM 1312 1131643 - 1131660 + r 70 -7 -3.82031 | opp_overlap 1131643 ATCGAGGAAAAAAAA GAGGCT TAATTT AGCCTC TTTAATCATGATTAA TERM 1313 1131660 - 1131643 - R 100 -7 -5.86965 | opp_overlap 1131643 ATCGAGGAAAAAAAA GAGGCT TAATTT AGCCTC TTTAATCATGATTAA trpA 1132491 - 1131685 - | tryptophan synthase subunit alpha trpB 1133681 - 1132491 - | tryptophan synthase subunit beta TERM 1314 1133261 - 1133273 + g 70 -7.7 -3.66378 | ATACATTTGGGCTTT GACGT TCT ACGTC TTTAGCTCCCATATA trpC 1135104 - 1133692 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpG 1136116 - 1135109 - | anthranilate phosphoribosyltransferase trpD 1136729 - 1136127 - | anthranilate synthase component II trpE 1137604 - 1136729 - | component I of anthranilate synthase trpE2 1138370 - 1137447 - | component I of anthranilate synthase TERM 1315 1138532 - 1138517 - R 93 -7.5 -5.71712 | TCGGACATAAAAAAA CCCGC TTAGTT GCGGG TAGTGGATTTATGTC TERM 1316 1138584 - 1138568 - R 80 -7.3 -4.52703 | TAAATTAGCACAAAA CACTACC CAA AGTAGTG CCACCATCGTGAGCT trpL 1138647 - 1138570 - | trp operon leader peptide TERM 1317 1139037 - 1139025 - g 71 -4.1 -4.88407 | TGAGCTAATTAAAAA TCAAG AAG CTCGA AGAGATGCTCGTGCA trpH 1138741 - 1139580 + | hypothetical protein yciO 1139654 - 1140274 + | hypothetical protein TERM 1318 1140292 - 1140314 + T 93 -7.8 -5.65177 | opp_overlap 1140291 1140294 AATAAATTATCGAAG TAGCCAGA CAGTTGT TCTGGCTA TTTTTTTATCGGTGT ainR 1142788 - 1140329 - | putative autoinducer regulatory protein AinR TERM 1319 1140548 - 1140535 - G 71 -3.9 -4.8667 | opp_overlap 1140535 GAGAGTCCATAAAAA TAAGA TCGA TCTTA TTATTGGTTGCCATC ainS 1143942 - 1142800 - | C8-HSL autoinducer synthesis protein AinS TERM 1320 1144847 - 1144875 + G 71 -6.7 -3.99374 | opp_overlap 1144841, overlap 1144851 1144855 TGTAATGTACGCCGG CGGTGAAGGTATG AAC CATACTTTCTACG TTGTTATTAATGAAG TERM 1321 1145317 - 1145307 - g 89 -6.8 -5.22039 | TCTAAAGGTAAAAAA CCAG CAG CTGG TCAAAAACCAGTAAG rluB 1144323 - 1145387 + | 23S rRNA pseudouridylate synthase TERM 1322 1145407 - 1145462 + T 89 -10.9 -3.671 | opp_overlap 1145418 1145423, overlap 1145409 1145423 ATCGTTAAAAACACT TAGATGAATAATAAAAGGGTTG-TACC GTAA GGTAGCAACCCTTTT-TTGTTCGTCTC TTTAAAAATTTATTT TERM 1323 1145409 - 1145460 + T 95 -13.5 -3.40173 | opp_overlap 1145418 1145423, overlap 1145407 1145423 CGTTAAAAACACTTA GATGAATAATAAAAGGGTTG-TACC GTAA GGTAGCAACCCTTTT-TTGTTCGTC TCTTTAAAAATTTAT TERM 1324 1145452 - 1145418 - T 81 -9.5 -3.78034 | gap 1, opp_overlap 1145409 1145407 1145423, overlap 1145423 CACTTAGATGAATAA TAAAAGGGTTG-TACC GTAA GGTAGCAACCCTTTTT TGTTCGTCTCTTTAA TERM 1325 1145423 - 1145447 + T 100 -9.4 -5.5353 | gap 1, opp_overlap 1145423 1145418, overlap 1145409 1145407 AGATGAATAATAAAA GGGTTG-TACC GTAA GGTAGCAACCC TTTTTTGTTCGTCTC TERM 1326 1145447 - 1145423 - T 100 -9.4 -4.93661 | gap 1, opp_overlap 1145409 1145407 1145423, overlap 1145418 AGATGAATAATAAAA GGGTTG-TACC GTAA GGTAGCAACCC TTTTTTGTTCGTCTC yciK 1146212 - 1145472 - | short chain dehydrogenase TERM 1327 1146748 - 1146736 - g 73 -7.7 -3.94188 | ATCGATGCGAAAGAA GTAGC AGC GCTAC GTGAGGAAGTATCAG TERM 1328 1147143 - 1147126 - g 71 -4.9 -4.652 | AAAGCACGTGAAAAA TTCCAAC TAGA ATTGGAA GAAACTCATGTTTTA sohB 1146376 - 1147437 + | putative periplasmic protease TERM 1329 1147526 - 1147511 - f 74 -3.2 -5.35459 | opp_overlap 1147501 1147511, overlap 1147504 1147513 AGATATGACAAAAAA GGCTGA GATT TCAGTC TTATTTGAGATTTTA TERM 1330 1147632 - 1147610 - f 81 -8.4 -4.24342 | opp_overlap 1147610 TCTGTTAGGAATAAA GCCGTACATA TAG CATGTGCGGC TTTTTTATAGATGAT TERM 1331 1147610 - 1147632 + F 100 -9.9 -5.28778 | opp_overlap 1147610 TCTGTTAGGAATAAA GCCGTACAT ATAGC ATGTGCGGC TTTTTTATAGATGAT TERM 1332 1148007 - 1148026 + G 71 -5 -4.64763 | opp_overlap 1148007 1148006 1148011 TAATTATGAAATAAG CAAAGCAA CTGG TCGCTTTG TTGTTTTTTGCATAA VF_1041 1147804 - 1148220 + | hypothetical protein VF_1042 1148311 - 1149291 + | hypothetical protein TERM 1333 1149329 - 1149354 + F 78 -7.5 -4.208 | opp_overlap 1149331, overlap 1149349 CAATACGATTTATTA CACTCGGCATC CCAA GTTGTCGGGTG TTTCTCGTTTTAAGG TERM 1334 1150232 - 1150212 - g 70 -9.9 -2.72461 | opp_overlap 1150215, overlap 1150211 GAATGTTTGGTAAAG CAATTTTAC AAA GTAAAATTG ATGCAATGGTTAGAG VF_1043 1149458 - 1150618 + | hypothetical protein TERM 1335 1150643 - 1150669 + F 100 -10.8 -4.208 | opp_overlap 1150645, overlap 1150664 CAACACGATTTACTA CACTCGGCATCC TCA GGTTGTCGGGTG TTTCTCGTTTTAGGG TERM 1336 1151712 - 1151692 - g 86 -9.9 -4.07568 | CTGTGTCTTCTAAAA TATCAAACT TTC AGTTTGATA TGACTATTGAGCATA TERM 1337 1152038 - 1152058 + G 72 -8.3 -3.58533 | opp_overlap 1152036 ATTATTAAAAATCCT TCCTCTTCC ATC GGAAAAGGA TTTAAAACGTTGTAA rrt 1151061 - 1152248 + | reverse transcriptase VF_1045 1152238 - 1152963 + | hypothetical protein VF_1046 1153074 - 1153664 + | hypothetical protein VF_1047 1153797 - 1154267 + | hypothetical protein TERM 1338 1154473 - 1154446 - T 83 -11.4 -2.93382 | overlap 1154449 TCGTATAGTTAGATA TAAGGGCAGCTA ATTT CAACTGCCCTTA AGAACCTAAAATGTT TERM 1339 1154470 - 1154449 - T 77 -8.7 -3.61239 | overlap 1154446 TATAGTTAGATATAA GGGCAGCTA ATTT CAACTGCCC TTAAGAACCTAAAAT VF_2604 1154638 - 1154489 - | hypothetical protein TERM 1340 1154532 - 1154554 + g 100 -4.8 -5.71712 | GTGATTTTGTTGTGT GAATCTACCC AAT GAGTTGATTC TTTTTTTGTATCGAA TERM 1341 1155635 - 1155645 + G 70 -5.4 -4.46757 | AGATTTATCGCAATT GTTG TTT CAAC TTTTGTAGCTATCTT VF_1048 1155572 - 1156090 + | hypothetical protein TERM 1342 1156127 - 1156152 + T 100 -11.9 -5.40004 | AATAACGATTTGCTA CACTCGGCATA TTAG TCTGCCGAGTG TTTTTTCATTTAATA VF_1049 1157025 - 1156168 - | putative DNA methylase TERM 1343 1157419 - 1157447 + r 100 -11.9 -4.49337 | opp_overlap 1157419 1157424 1157426, overlap 1157426 TGATTTGTAAGGTAA TAAAATAGGCTGA AAT TCAGCCTTTTTTA TTTTCTACATTGTAC TERM 1344 1157447 - 1157419 - R 89 -11.9 -3.17723 | opp_overlap 1157419 1157426, overlap 1157424 1157426 TGATTTGTAAGGTAA TAAAATAGGCTGA AAT TCAGCCTTTTTTA TTTTCTACATTGTAC TERM 1345 1157442 - 1157424 - R 83 -7.4 -4.72029 | opp_overlap 1157419 1157426, overlap 1157419 1157426 TGTAAGGTAATAAAA TAGGCTGA AAT TCAGCCTT TTTTATTTTCTACAT TERM 1346 1157426 - 1157440 + r 100 -10 -5.86976 | opp_overlap 1157424 1157419 1157426, overlap 1157419 TAAGGTAATAAAATA GGCTGA AAT TCAGCC TTTTTTATTTTCTAC TERM 1347 1157440 - 1157426 - R 87 -10 -3.9716 | opp_overlap 1157426 1157419, overlap 1157424 1157419 TAAGGTAATAAAATA GGCTGA AAT TCAGCC TTTTTTATTTTCTAC VF_1050 1157722 - 1157477 - | hypothetical protein TERM 1348 1158396 - 1158383 - g 81 -6.7 -4.79174 | ACCTAATTAATAAAA TGGGT ATTG ACCCA TACAATGATTGGGCA TERM 1349 1160418 - 1160400 - g 83 -9.6 -3.96449 | TAAGATCTTAAAGAA TGGTGAAG TTG CTCCACCA AAAGAAGATCCTGTA TERM 1350 1160545 - 1160531 - g 72 -10 -2.72144 | overlap 1160530 1160533 GCACTTTCCCTAAAT CACGTG AAA CACGTG CACCATTAGTGGAAG topA 1158157 - 1160787 + | DNA topoisomerase I TERM 1351 1160812 - 1160831 + F 100 -10 -5.48825 | opp_overlap 1160812 AGATATCAAATGAAA GAGCTGCA GAAA TGCGGCTC TTTTTTTACGTAATA TERM 1352 1160831 - 1160812 - f 78 -7.8 -4.13341 | opp_overlap 1160812 AGATATCAAATGAAA GAGCTGCA GAAA TGCGGCTC TTTTTTTACGTAATA TERM 1353 1161936 - 1161922 - g 78 -7.2 -4.39652 | opp_overlap 1161924, overlap 1161919 ATCATAAACAAAGAA GATCTT AAG AAGATC TCATGGGATGTGTTA VF_1052 1160935 - 1162395 + | divalent anion:sodium symporter family protein TERM 1354 1162575 - 1162563 - g 70 -3.3 -4.92757 | TTATCAAGAAGAAAA TAGCG AAG CGCAA GTCAAAGTGTTCAGT VF_1053 1162399 - 1163739 + | sensory transduction protein kinase VF_1054 1163726 - 1164199 + | ScrF protein TERM 1355 1164245 - 1164208 - T 79 -9.4 -3.3941 | gap 1, opp_overlap 1164208 1164204 1164213, overlap 1164209 ACGATAGGTAAGTAA GTTAAGCATCTCACTAC AGTGA GTAG-GAGATGCTTAAG TCAGTTAATTGGTAA TERM 1356 1164208 - 1164245 + T 72 -9.4 -2.61216 | gap 1, opp_overlap 1164208 1164209, overlap 1164204 1164213 ACGATAGGTAAGTAA GTTAAGCATCTCACTAC AGTGA GTAG-GAGATGCTTAAG TCAGTTAATTGGTAA TERM 1357 1164244 - 1164209 - T 87 -12.9 -2.63164 | gap 1, opp_overlap 1164208 1164204 1164213, overlap 1164208 CGATAGGTAAGTAAG TTAAGCATCTCACTAC AGTGA GTAG-GAGATGCTTAA GTCAGTTAATTGGTA TERM 1358 1164213 - 1164240 + T 74 -9.3 -3.10677 | gap 1, opp_overlap 1164209 1164208, overlap 1164208 1164204 AGGTAAGTAAGTTAA GCATCTCACTAC AGTGA GTAG-GAGATGC TTAAGTCAGTTAATT ldhA 1165245 - 1164250 - | fermentative D-lactate dehydrogenase, NAD-dependent TERM 1359 1166352 - 1166374 + G 77 -10.6 -2.82156 | opp_overlap 1166355, overlap 1166349 1166347 ATGGACATGGTGGAA GCATTAGCCG CTT CTGCTAATGC TGATATTGCTTGTGC VF_1056 1165494 - 1167203 + | phosphoglucomutase TERM 1360 1167222 - 1167243 + T 100 -13 -5.626 | opp_overlap 1167222 GAGATGAAATAAAAA CGGCGAGG ATAGAA CCTCGCCG TTTTTTTATGCGGTG TERM 1361 1167243 - 1167222 - T 100 -13 -5.35815 | opp_overlap 1167222 GAGATGAAATAAAAA CGGCGAGG ATAGAA CCTCGCCG TTTTTTTATGCGGTG VF_1057 1167884 - 1167249 - | lysine exporter protein ycgM 1168668 - 1168054 - | isomerase/hydrolase TERM 1362 1169050 - 1169034 - g 88 -10.9 -3.97812 | opp_overlap 1169030 ATAACCAAGAGCAAA GCTACCA AGC TGGTAGC CAAGTATCATTTAAT VF_1059 1168949 - 1170616 + | basic endochitinase TERM 1363 1170636 - 1170661 + F 100 -12.7 -5.93252 | opp_overlap 1170636 TTAAATAAAGATAAA CACCTTCCAGA TGAT TTTGGAAGGTG TTTTTTATTTTTGCA TERM 1364 1170661 - 1170636 - f 100 -10.5 -4.50993 | opp_overlap 1170636 TTAAATAAAGATAAA CACCTTCCAGA TGAT TTTGGAAGGTG TTTTTTATTTTTGCA VF_1060 1170782 - 1172011 + | peptidase T TERM 1365 1173131 - 1173144 + G 77 -8.1 -4.26953 | TGGGGTCGGGGAATG CGCCA TTCT TGGCG TTTGTTGAATTAATT VF_1061 1172014 - 1173381 + | anaerobic C4-dicarboxylate transporter TERM 1366 1173454 - 1173416 - T 82 -5.5 -5.22006 | gap 1, opp_overlap 1173416 CTATCATAATAAAAA GCCACAC-TACCTA AAATTCCCAAAA TAGGTATGTGTGGC TTTATTAGTTTATTA VF_1062 1174728 - 1173472 - | adenylosuccinate synthetase TERM 1367 1174662 - 1174640 - G 75 -9.8 -3.41359 | overlap 1174638 CCTTGAAAACGAATA CTTGCAGCCG CTT CAGCAGCAAG AAAATCAACGATGCG TERM 1368 1175638 - 1175626 - g 70 -2.7 -5.09259 | GATCTTAAAACAAAA GTAAC GCC ATTAC CTGAATTCCCGACAA VF_1063 1174858 - 1175754 + | transcriptional regulator TERM 1369 1176153 - 1176138 - g 71 -7.6 -3.94877 | ATGCCTGAACAAGAA CATGAC CCAC GTCATG CCTACCAAGTCATTC gadA 1176030 - 1177424 + | glutamate decarboxylase A, PLP-dependent TERM 1370 1177460 - 1177485 + F 72 -8.4 -3.44284 | overlap 1177458 1177458 1177476 ACATTTTGCTTTTTA GATCCTCTAT TGTTCT GTAGAGGATC TCTTCTTCCTAAAAA TERM 1371 1177690 - 1177706 + G 77 -5.2 -4.87892 | TCTTTTCTTATATTG CACAAA ATCCG TTTGTG TTTCTTTTCTTAAGC VF_1065 1177515 - 1179392 + | integral membrane protein VF_1066 1180305 - 1179403 - | LysR family transcriptional regulator TERM 1372 1180765 - 1180780 + G 76 -3.2 -5.2112 | opp_overlap 1180766, overlap 1180766 GCTTTATGAAAAATA TCGCCT TAGC AGGTGG TTTTTTAGTGATATT yqjF 1180458 - 1180850 + | quinol oxidase subunit VF_1068 1180860 - 1181726 + | pirin VF_1069 1181954 - 1181757 - | hypothetical protein TERM 1373 1182053 - 1182083 + r 73 -6.9 -4.01703 | opp_overlap 1182055, overlap 1182055 ATTTTGTTGATAAAA AAGCCTTCTAGTT TTAGT AACCAGAAGGCTG TTATTTAAATATTAT TERM 1374 1182081 - 1182055 - R 100 -11.7 -5.24129 | opp_overlap 1182053 1182055 TTTGTTGATAAAAAA GCCTTCTAGTT TTAGT AACCAGAAGGC TGTTATTTAAATATT TERM 1375 1182055 - 1182081 + r 80 -9.5 -3.58859 | opp_overlap 1182055, overlap 1182053 TTTGTTGATAAAAAA GCCTTCTAGTT TTAGT AACCAGAAGGC TGTTATTTAAATATT VF_1070 1183580 - 1182102 - | CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase VF_1071 1185203 - 1183605 - | CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase TERM 1376 1184626 - 1184640 + g 78 -4.2 -5.27938 | TTATCTGCTAGCTGT GCGTAA TCT TCACGC TTTTTATTTGGCGGT VF_1072 1185368 - 1186306 + | LysR family transcriptional regulator VF_1073 1187234 - 1186281 - | hypothetical protein VF_1074 1188145 - 1187324 - | AraC family transcriptional regulator VF_1075 1188750 - 1188148 - | amino acid transporter LysE TERM 1377 1188730 - 1188718 - G 74 -9.1 -3.46081 | overlap 1188726 GAGTGAAGTAACCAA GGCGA ACA TCGCC ATAGCAAGAAATAAA VF_1076 1189401 - 1188760 - | sulfite-dehydrogenase VF_1077 1190173 - 1189415 - | NirV precursor TERM 1378 1189867 - 1189854 - G 81 -6.7 -4.71426 | TCTTTACCAACAAAA CAAGC AAAA GCTTG AGCTTCATACCAACT TERM 1379 1189887 - 1189897 + g 73 -2.4 -5.25803 | TCATACCAACTGATC CCTG TGA CTGG TTTTTTATCCCCATT VF_1078 1190574 - 1190170 - | hypothetical protein VF_1079 1191206 - 1190547 - | hypothetical protein VF_1080 1191391 - 1191864 + | hypothetical protein TERM 1380 1191901 - 1191933 + T 80 -9.4 -3.61517 | gap 1 TCTGTGCTGATATTT TACT-ATCCGAGCAT TTAT ATGTTCGGATAAGTA TTGTTCCACACAAGT VF_1081 1192542 - 1191958 - | TetR family transcriptional regulator TERM 1381 1192590 - 1192607 + H 71 -8.5 -3.03821 | opp_overlap 1192589, overlap 1192575 TTGTTCAAATATTAT CTTGAAC GATC GTTCAAG TCTAGTTATATTGTT TERM 1382 1193077 - 1193089 + G 77 -7.7 -4.18018 | opp_overlap 1193076 TTATCTGAAGCACAG CGTCA CTA TGACG TTTTGGATAAACACC yfcG 1192687 - 1193379 + | glutathione S-transferase VF_1083 1193424 - 1194284 + | putative glutathione S-transferase YghU TERM 1383 1194339 - 1194305 - f 95 -14.5 -3.14468 | opp_overlap 1194305, overlap 1194310 GGTTACTATAGTTAA GCCAAGGATTTGATG TGAGG CATTAAATCCTTGGC TTTTTAGATTTAATA TERM 1384 1194305 - 1194339 + F 100 -17.4 -4.82855 | opp_overlap 1194305 1194310 GGTTACTATAGTTAA GCCAAGGATTTGATGT GAG GCATTAAATCCTTGGC TTTTTAGATTTAATA TERM 1385 1194609 - 1194587 - f 79 -10.5 -2.80195 | overlap 1194584 AGTGATTATTAACTA GGCTGGCGG CACTT CCGTCAGCC GGGCTGACGGAGAAT TERM 1386 1194700 - 1194677 - f 74 -5.3 -4.77165 | CGGTCCATAATAAAA GCTACTAGG GTATAG CCCAATAGC AAAAGAGGACTTGTA VF_1084 1194718 - 1196043 + | branched-chain amino acid transport system II carrier protein TERM 1387 1196064 - 1196094 + TF 90 -13.4 -3.11292 | opp_overlap 1196052 1196069, overlap 1196069 AATCTTTTTTTAATA AAAAACGGGTAGCT TTT GGCTACCCGTTTTG ATTTGTATTCGCAAT TERM 1388 1196069 - 1196089 + TF 100 -13.3 -4.67563 | opp_overlap 1196052 1196069, overlap 1196064 TTTTTTAATAAAAAA CGGGTAGCT TTT GGCTACCCG TTTTGATTTGTATTC TERM 1389 1196089 - 1196069 - Tf 100 -12.6 -5.4505 | opp_overlap 1196069 1196064, overlap 1196052 TTTTTTAATAAAAAA CGGGTAGC TTTTG GCTACCCG TTTTGATTTGTATTC VF_1085 1196734 - 1196120 - | outer membrane protein VF_2605 1196733 - 1196885 + | hypothetical protein VF_1086 1197071 - 1197928 + | transcriptional regulatory protein VF_1087 1197919 - 1198398 + | hypothetical protein TERM 1390 1198409 - 1198451 + F 85 -8.9 -4.22226 | gap 1, opp_overlap 1198416, overlap 1198442 TATAAAGTAACAATT CACTAAATTTGGTTATTT GTTAAATA AAATAACCAAATT-AGTG TTTGATTTGTATTCT VF_1088 1198671 - 1199984 + | anaerobic C4-dicarboxylate transporter TERM 1391 1200045 - 1200025 - f 100 -14 -4.3953 | opp_overlap 1200025 TTTAATTAGAACAAA GGCGAGCC TTAAT GGCTCGCC TTTTTTTGTTTGATT TERM 1392 1200025 - 1200045 + F 100 -14 -6.01187 | opp_overlap 1200025 TTTAATTAGAACAAA GGCGAGCC TTAAT GGCTCGCC TTTTTTTGTTTGATT VF_1089 1200227 - 1201159 + | immunogenic protein TERM 1393 1201187 - 1201213 + F 81 -7.4 -4.35693 | overlap 1201191 ACTCAATATTAAATG GAAGGGTAAG AGTTCTG CTTACCTTTC TTCTTTTCTGACTTT TERM 1394 1201191 - 1201209 + F 70 -4.6 -4.72617 | overlap 1201187 AATATTAAATGGAAG GGTAAG AGTTCTG CTTACC TTTCTTCTTTTCTGA TERM 1395 1202192 - 1202203 + G 74 -4.4 -4.95487 | TCATGCTTGCATCTA TTGC TCCT GCAA TTTTGTATTTCTTTT VF_1090 1201246 - 1203156 + | transporter TERM 1396 1203183 - 1203208 + T 100 -11.3 -5.30616 | gap 1, opp_overlap 1203183 GTTTCAGATATTAAA GCCCTTAGAGAT AAG ATC-CTAAGGGC TTTTTATTTAAGTAC TERM 1397 1203208 - 1203183 - T 90 -11.3 -3.88498 | gap 1, opp_overlap 1203183 GTTTCAGATATTAAA GCCCTTAGAGAT AAG ATC-CTAAGGGC TTTTTATTTAAGTAC VF_1091 1204804 - 1203230 - | methyl-accepting chemotaxis protein TERM 1398 1203741 - 1203759 + g 71 -5.3 -4.65895 | ACTGCAGTTACTTCC CCAATGT CCATT GCATTGG TTTTTAGCTCAGCAA VF_1092 1207136 - 1205130 - | methyl-accepting chemotaxis protein TERM 1399 1206764 - 1206802 + g 78 -2.7 -5.38951 | gap 1 ATTGATTTAATTGCG TAAATATTGTC-TGCATA TCGT TATACACGGCAATATTTG TTTTTTGTATCGATT TERM 1400 1207581 - 1207593 + G 79 -4.9 -5.10004 | GTGATACGTTTATTC TCAAT TCT ATTGA TTTTTAGTTCTTTTT TERM 1401 1207959 - 1207948 - g 72 -4.4 -4.73613 | opp_overlap 1207948 TTATTACTAATAAAA CCTT ATGG AAGG CTATTTGTCTCTTCT VF_1093 1207527 - 1208627 + | glutamate-gated potassium channel VF_1094 1208716 - 1209417 + | SAM-dependent methyltransferase VF_1095 1209479 - 1210414 + | LysR family transcriptional regulator VF_1096 1210685 - 1211890 + | nucleoside permease NupC TERM 1402 1211916 - 1211947 + T 90 -8.1 -5.31877 | opp_overlap 1211920, overlap 1211920 TAATTTCAAATAAAG AAAAGGTTGCGAT CAAAAA GTCGCAACCTTTA TTTTTTCTAGTCCCT TERM 1403 1211943 - 1211920 - T 90 -8.2 -5.18866 | opp_overlap 1211916 1211920 TTCAAATAAAGAAAA GGTTGCGA TCAAAAAG TCGCAACC TTTATTTTTTCTAGT TERM 1404 1211920 - 1211943 + T 95 -8.9 -5.1471 | opp_overlap 1211920, overlap 1211916 TTCAAATAAAGAAAA GGTTGCGAT CAAAAA GTCGCAACC TTTATTTTTTCTAGT VF_1097 1212939 - 1212031 - | BAX protein TERM 1405 1213036 - 1213055 + r 100 -10 -5.86976 | opp_overlap 1213036 AGGGGCGATCGAAAA CGGTGCTG TAAT TAGCACCG TTTTTTGTTTTATCG TERM 1406 1213055 - 1213036 - R 89 -9.3 -4.18197 | opp_overlap 1213036 AGGGGCGATCGAAAA CGGTGCT GTAATT AGCACCG TTTTTTGTTTTATCG VF_1098 1213624 - 1213085 - | peptidyl-prolyl cis-trans isomerase VF_1099 1214444 - 1213593 - | beta-lactamase VF_1100 1215283 - 1214495 - | D-cysteine desulfhydrase-like protein TERM 1407 1214701 - 1214713 + g 82 -4.1 -5.37043 | TTTCTCGATATAGTT TACCA AAA TGGTG TTTTTTCTCTGGGGT TERM 1408 1215436 - 1215464 + r 79 -5.5 -5.03201 | gap 1, opp_overlap 1215425 1215436 1215438, overlap 1215425 1215438 ACTAGCCAAATTTAA TA-TGGCCTTTA TTTAAT TAAAGGCCATTA TTTTTAATTATTATT TERM 1409 1215461 - 1215438 - R 79 -9.7 -3.21063 | opp_overlap 1215425 1215438 1215436, overlap 1215425 1215436 TAGCCAAATTTAATA TGGCCTTTA TTTAAT TAAAGGCCA TTATTTTTAATTATT TERM 1410 1215438 - 1215461 + r 100 -9.7 -4.57543 | opp_overlap 1215425 1215436 1215438, overlap 1215425 1215436 TAGCCAAATTTAATA TGGCCTTTA TTTAAT TAAAGGCCA TTATTTTTAATTATT yajD 1215819 - 1215475 - | hypothetical protein TERM 1411 1215892 - 1215878 - H 72 -5.8 -4.29369 | TAAAAAATAACTAAA TGTATA ACC TATACA CATCTAAACATAGAA VF_1102 1216045 - 1216416 + | hypothetical protein VF_1103 1216528 - 1216995 + | hypothetical protein TERM 1412 1217664 - 1217652 - g 72 -3.4 -5.07567 | opp_overlap 1217630 1217658 1217659 1217659 GGATATCTCAAAAAA CGTT TATTC AACG TAAGGTTGAGTCTTA VF_1104 1217108 - 1217884 + | hypothetical protein TERM 1413 1218468 - 1218446 - g 74 -4.9 -4.70169 | TTATATGTAATAAAA GGCATTG TTCACTTTC CAATGCC AGATCTAAATAACCA TERM 1414 1218545 - 1218567 + G 79 -3.4 -5.47159 | GAGAATCAAGTAACG TCATGGGTGT TGC ATACACGTGA TTTTTCTTTGTTACC VF_1105 1217900 - 1219129 + | transporter TERM 1415 1219172 - 1219162 - g 73 -5.4 -4.63218 | TGTGGCGCAATAAAA TGAG AAC CTCA ATCATGCTGGGCGCT TERM 1416 1219502 - 1219492 - g 85 -4 -5.68039 | AAATGGAGAAAAAAA TAAC CCC GTTA TCGGCACATATCATT TERM 1417 1219583 - 1219573 - g 80 -4.6 -5.32882 | TAGTATCACAAAAAA CCGC AGA GCGA TTAAAACTGCGCGTG VF_1106 1219119 - 1220336 + | ABC transporter permease VF_1107 1220346 - 1221029 + | ABC transporter ATP-binding protein TERM 1418 1221123 - 1221100 - f 82 -7.5 -4.49556 | opp_overlap 1221100 TTTTTATTAAAGAAA GACGTAAGA GTTTGT TCTTACGCC TGATTCTATTCATTG VF_1108 1221152 - 1222057 + | chaperone protein DnaJ-like protein VF_1109 1222096 - 1223280 + | hypothetical protein VF_1110 1223585 - 1223328 - | hypothetical protein VF_1111 1223822 - 1224559 + | LysR family transcriptional regulator TERM 1419 1224588 - 1224557 - T 84 -11.8 -2.75183 | opp_overlap 1224557 1224561, overlap 1224562 AGCGTGATGGAACGA TAAAATCCAAGTGC GTTA ACACTTGGACTTTA TTATTGAAATGTGAA TERM 1420 1224557 - 1224588 + T 77 -8.9 -3.66844 | opp_overlap 1224557 1224562, overlap 1224561 AGCGTGATGGAACGA TAAAATCCAAGTG CGTTAA CACTTGGACTTTA TTATTGAAATGTGAA TERM 1421 1224583 - 1224562 - T 93 -9.5 -4.55491 | opp_overlap 1224561 1224557, overlap 1224557 GATGGAACGATAAAA TCCAAGTGC GTTA ACACTTGGA CTTTATTATTGAAAT VF_1112 1225591 - 1224608 - | nonspecific acid phosphatase precursor yfeT 1226556 - 1225705 - | DNA-binding transcriptional regulator murQ 1226817 - 1227719 + | N-acetylmuramic acid-6-phosphate etherase murP 1227806 - 1229260 + | N-acetylmuramic acid phosphotransfer permease TERM 1422 1229321 - 1229346 + F 100 -12.6 -5.59655 | CTATAAGTACGCTAA GGCCTCACAG GTACCA CTGTGGGGCC TTTTTTCTTGATTTA VF_2606 1229603 - 1229725 + | hypothetical protein TERM 1423 1230685 - 1230671 - g 76 -4.4 -5.09204 | opp_overlap 1230676, overlap 1230676 1230678 AGATTTTAAGAAAAA TAAAAT ATC ATTTTA TGATGATAATTTAAA TERM 1424 1230693 - 1230676 - g 78 -2.8 -5.42605 | opp_overlap 1230676, overlap 1230671 1230678 TTAAGAAAAATAAAA TATCAT TTTATG ATGATA ATTTAAAAGGTGATT TERM 1425 1231131 - 1231108 - g 82 -8.2 -4.60977 | opp_overlap 1231107 1231110 AATATAATTATAAAA CATATGAAGC TCTT GCTGCATATG AGTTATCCATTGGTA VF_1116 1230054 - 1231334 + | transcriptional regulatory protein TERM 1426 1232424 - 1232444 + G 76 -9.1 -3.68988 | overlap 1232427 ATAATGTTTCAGCGG CAACAGAAG AAG TTTCTGTTG TTATGTTAGATACCG VF_1117 1231418 - 1233232 + | methyl-accepting chemotaxis protein TERM 1427 1233289 - 1233264 - f 100 -14.8 -3.95022 | opp_overlap 1233264 GTTATCAATATCAAA GGCCTCACAG GTAGCA CTGTGAGGCC TTTTTTTATGAAAAA TERM 1428 1233264 - 1233289 + F 100 -14.8 -5.60993 | opp_overlap 1233264 GTTATCAATATCAAA GGCCTCACAG GTAGCA CTGTGAGGCC TTTTTTTATGAAAAA yaeQ 1233342 - 1233914 + | hypothetical protein TERM 1429 1233972 - 1234002 + F 89 -7.6 -5.24129 | opp_overlap 1233972 AAATCTGGTTCATAA TGCCTTCTGTTTAG CCT TTATTCAGAAGGCA TTTTTTATGGAGCCG TERM 1430 1234438 - 1234460 + G 78 -10.6 -2.96444 | overlap 1234438 TTCGGTACCAGTTCA GGCATTGGAG GCC CTCCAATGGC CTTGTTATTACAGCA TERM 1431 1234438 - 1234461 + G 84 -10.4 -3.94877 | gap 1, overlap 1234438 TTCGGTACCAGTTCA GG-CATTGGAG GCC CTCCAATGGCC TTGTTATTACAGCAT VF_1119 1234024 - 1234737 + | permease VF_1120 1234819 - 1235421 + | acetyltransferase TERM 1432 1235448 - 1235485 + T 81 -9.3 -3.72765 | opp_overlap 1235458, overlap 1235458 AATTAGTTATATTGA CATAAAAAAACCGCTGG AAGT TCAGCGGTTTTTTCATA TTTAGCATTTGAGTT TERM 1433 1235458 - 1235475 + T 100 -9.1 -5.32699 | opp_overlap 1235458, overlap 1235448 ATTGACATAAAAAAA CCGCTGG AAGT TCAGCGG TTTTTTCATATTTAG TERM 1434 1235475 - 1235458 - T 93 -8.4 -5.72616 | opp_overlap 1235448 1235458 ATTGACATAAAAAAA CCGCTG GAAGTT CAGCGG TTTTTTCATATTTAG yeaV 1237462 - 1235510 - | transporter VF_1122 1237914 - 1239950 + | prolyl endopeptidase TERM 1435 1240017 - 1240040 + F 100 -9.6 -4.74989 | opp_overlap 1240015 TATCAATAATGTAGA GCCACATGCA GAAT TGTGTGTGGC TTTTATGTGTTATTT TERM 1436 1241104 - 1241094 - g 79 -5.4 -5.00616 | CTTGGTTCGAAAAAA GCAA GCA TTGC AGAGTTAGCAGGGAA VF_1123 1240260 - 1242803 + | putative lipoprotein TERM 1437 1242839 - 1242857 + T 100 -13.2 -5.72254 | opp_overlap 1242839 ATATTTAACGTTAAA CGCTCCTA ATT TAGGAGCG TTTTTTATTATTTGC TERM 1438 1242857 - 1242839 - T 95 -13.2 -3.67417 | opp_overlap 1242839 ATATTTAACGTTAAA CGCTCCTA ATT TAGGAGCG TTTTTTATTATTTGC yhiP 1244377 - 1242890 - | transporter TERM 1439 1243010 - 1242999 - G 74 -4.4 -4.84642 | overlap 1242994 GCTAAAGTAACAAAA CCAA TGTT TTGG AATAGCTCAGTATAA VF_1125 1244759 - 1244956 + | hypothetical protein VF_1126 1245777 - 1247513 + | hypothetical protein VF_1127 1247510 - 1249264 + | hypothetical protein TERM 1440 1249323 - 1249299 - g 74 -3.7 -5.09895 | opp_overlap 1249299 1249306, overlap 1249300 1249301 1249306 GATCCAGCTAAAAAA CTTTAAATCTT TTG AAGATTTAACA ATTTCACCTAATAAC TERM 1441 1250073 - 1250045 - g 79 -11.3 -2.70946 | opp_overlap 1250032 1250051, overlap 1250044 1250047 1250051 1250063 GTTTTTTACAAATAG TAGAAATTCTATC AAC AATAGAATTTCTA GATGCTCCTTTAAAA TERM 1442 1250071 - 1250047 - g 71 -9.5 -2.89797 | opp_overlap 1250032 1250051, overlap 1250045 1250044 1250051 1250063 TTTTTACAAATAGTA GAAATTCTATC AAC AATAGAATTTC TAGATGCTCCTTTAA TERM 1443 1251051 - 1251063 + G 74 -4.8 -4.70266 | TTCAAAGCTTTTTCT CGCA TATAT TGCG TTTTTAAATGATATT VF_1128 1249264 - 1251153 + | hypothetical protein TERM 1444 1251380 - 1251397 + T 73 -8.4 -3.64703 | opp_overlap 1251380 ACCTCCACACAAAAA GGTCGC TCCCAT GCGACC TTTCCCTACAAAACC TERM 1445 1251397 - 1251380 - T 90 -8.4 -4.9725 | opp_overlap 1251380 ACCTCCACACAAAAA GGTCGC TCCCAT GCGACC TTTCCCTACAAAACC VF_1129 1252362 - 1251403 - | hypothetical protein VF_1130 1252855 - 1252397 - | 23S rRNA methyltransferase TERM 1446 1252511 - 1252525 + g 70 -2.8 -5.03314 | AATCGTTTCACGGCA GAAATC GGT GATCTC TTTTTTCAGCGTACC VF_1131 1252944 - 1253423 + | hypothetical protein VF_1132 1253587 - 1254969 + | alpha-amylase TERM 1447 1255020 - 1255002 - T 100 -11.8 -5.4756 | opp_overlap 1255002 AAGCGTAATAAAAAA GGTGGATA ATT TATCCACC TTTTTTGTTTGTGAC TERM 1448 1255002 - 1255020 + T 100 -11.8 -5.72622 | opp_overlap 1255002 AAGCGTAATAAAAAA GGTGGATA ATT TATCCACC TTTTTTGTTTGTGAC VF_1133 1257063 - 1255054 - | methyl-accepting chemotaxis protein hinT 1257351 - 1257701 + | purine nucleoside phosphoramidase VF_1135 1257769 - 1259166 + | TPR repeat-containing protein VF_1136 1259166 - 1259555 + | hypothetical protein VF_1137 1259672 - 1260262 + | putative lipoprotein TERM 1449 1260286 - 1260321 + T 100 -12.8 -4.69326 | gap 1, opp_overlap 1260291, overlap 1260291 TTACTTAGAATCATA AAAAAGCCCTTCATCTC GTT GAG-TGAAGGGCTTTTA TTTTGTGTTGAATAT TERM 1450 1260316 - 1260291 - T 100 -12.7 -5.39755 | gap 1, opp_overlap 1260286 1260291 TAGAATCATAAAAAA GCCCTTCATCTC GTT GAG-TGAAGGGC TTTTATTTTGTGTTG TERM 1451 1260291 - 1260316 + T 100 -12.7 -5.26907 | gap 1, opp_overlap 1260291, overlap 1260286 TAGAATCATAAAAAA GCCCTTCATCTC GTT GAG-TGAAGGGC TTTTATTTTGTGTTG tcpI 1262204 - 1260342 - | methyl-accepting chemotaxis protein, TcpI-related TERM 1452 1262090 - 1262100 + g 73 -5.4 -4.60302 | overlap 1262087 GTGCAATCTTACTGG CATG CGT CATG TTGTTTTCTTTGTAT VF_1139 1262526 - 1262948 + | hypothetical protein TERM 1453 1263004 - 1262972 - T 77 -8.7 -3.68962 | gap 1, opp_overlap 1262980, overlap 1262980 CTCAATAAATCAGAA TAAAAAAATCCGCC GATAAT GGCGGA-TTTTTTA TGAGTGCTATTTTTT TERM 1454 1262997 - 1262980 - T 100 -8.4 -5.89921 | opp_overlap 1262980, overlap 1262972 ATCAGAATAAAAAAA TCCGCC GATAAT GGCGGA TTTTTTATGAGTGCT TERM 1455 1262980 - 1262997 + T 100 -9.1 -5.28778 | opp_overlap 1262972 1262980 ATCAGAATAAAAAAA TCCGCCG ATAA TGGCGGA TTTTTTATGAGTGCT VF_1140 1263754 - 1263011 - | methyltransferase thiK 1264037 - 1264873 + | thiamine kinase ycfP 1265000 - 1265551 + | hypothetical protein TERM 1456 1265589 - 1265606 + F 74 -3.4 -5.21709 | opp_overlap 1265583 1265591 GAAACATAATAAAAA CTTCAC ATTATC GTGAGG TTTTTTGATCTAAAC ndh 1265915 - 1267204 + | respiratory NADH dehydrogenase 2/cupric reductase TERM 1457 1267258 - 1267235 - f 83 -8.2 -4.29981 | opp_overlap 1267235 TAAATAGATTTAAAA GCAGAAATAC TCCG GTGTTTCTGC TTTTTTTGTACCTAA TERM 1458 1267235 - 1267258 + F 100 -10.4 -5.64274 | opp_overlap 1267235 TAAATAGATTTAAAA GCAGAAATAC TCCG GTGTTTCTGC TTTTTTTGTACCTAA VF_1144 1267371 - 1268666 + | DNA and RNA helicase VF_1145 1268676 - 1269122 + | hypothetical protein TERM 1459 1269147 - 1269170 + F 89 -6.7 -5.76633 | opp_overlap 1269147 TAGCACTAAACGAAA GGTTGAACG CGAAAT CGTTCGGCC TTTTTTTATATCTAA TERM 1460 1269442 - 1269428 - f 71 -8.6 -3.10878 | overlap 1269427 ATGATTCGAAGAAAG TTGCAC GGA GTGCAA TGGTCAATAATCGAG VF_1146 1269512 - 1271881 + | chitodextrinase precursor TERM 1461 1271964 - 1271989 + T 100 -13.5 -5.67283 | opp_overlap 1271964 ACTAATATACAAAAA TCCCCATTAAT AATG ATTAATGGGGA TTTTTTATTTAACTT TERM 1462 1271989 - 1271964 - T 100 -13.5 -5.10968 | opp_overlap 1271964 ACTAATATACAAAAA TCCCCATTAAT AATG ATTAATGGGGA TTTTTTATTTAACTT cstA 1273476 - 1272010 - | peptide transporter induced by carbon starvation TERM 1463 1273566 - 1273536 - R 79 -9.8 -3.21395 | overlap 1273534 1273537 ATGCTGCGTATAATA CTGTTGGGCGTAAA GAG TTCACGCCCAAAAA AGGTGAGTGGTTGTG TERM 1464 1273565 - 1273537 - R 80 -11.1 -2.52623 | overlap 1273536 1273534 TGCTGCGTATAATAC TGTTGGGCGTAAA GAG TTCACGCCCAAAA AAGGTGAGTGGTTGT yehT 1274353 - 1273637 - | putative two-component response-regulatory protein YehT yehU 1276028 - 1274346 - | sensory kinase in two-component system with YehT TERM 1465 1276394 - 1276376 - g 70 -8.2 -3.72576 | opp_overlap 1276375 TTTCTTCCCATTAAA CACAGCTA TTT TAGCTATG GGTATCTTCTATGGT yaaH 1276275 - 1276862 + | inner membrane protein associated with acetate transport TERM 1466 1276875 - 1276914 + T 100 -16.7 -2.88579 | opp_overlap 1276884, overlap 1276884 TAAGTTTTAAGTTTC CATGAAAAAGGCAGCTC ATAAAA GAGCTGCCTTTTTTGTG TCTGTAAGAAATTGC TERM 1467 1276905 - 1276884 - T 100 -11.6 -4.7254 | opp_overlap 1276875 1276884 AGTTTCCATGAAAAA GGCAGCTC ATAAAA GAGCTGCC TTTTTTGTGTCTGTA TERM 1468 1276884 - 1276905 + T 100 -11.6 -5.4492 | opp_overlap 1276884, overlap 1276875 AGTTTCCATGAAAAA GGCAGCTC ATAAAA GAGCTGCC TTTTTTGTGTCTGTA VF_1151 1277091 - 1276930 - | hypothetical protein TERM 1469 1277884 - 1277898 + G 74 -5 -4.76233 | opp_overlap 1277884 ATGACGTTAATGCAA GGTGTT GTG AATACC TTTGTTATTTTCTTA htpX 1277404 - 1278279 + | heat shock protein HtpX TERM 1470 1278323 - 1278295 - f 85 -10.4 -3.46068 | opp_overlap 1278301, overlap 1278301 TCTTTAATTTAAAGA TAAAAACCCGAG GCTTT CTCGGGTTTTTT TATATGTATAGATCA TERM 1471 1278317 - 1278301 - f 100 -9.4 -5.20783 | opp_overlap 1278301, overlap 1278295 ATTTAAAGATAAAAA CCCGAG GCTTT CTCGGG TTTTTTTATATGTAT TERM 1472 1278301 - 1278317 + F 100 -10.1 -5.77988 | opp_overlap 1278295 1278301 ATTTAAAGATAAAAA CCCGAGG CTT TCTCGGG TTTTTTTATATGTAT yehS 1278473 - 1278892 + | hypothetical protein TERM 1473 1278934 - 1278951 + T 100 -9.9 -5.63504 | opp_overlap 1278934 GAATGAATAAAAAAA CCACTGA ATAA TCAGTGG TTTTTTTGTAGAGTT TERM 1474 1278951 - 1278934 - T 100 -9.9 -5.87996 | opp_overlap 1278934 GAATGAATAAAAAAA CCACTGA ATAA TCAGTGG TTTTTTTGTAGAGTT VF_1154 1279477 - 1278965 - | hypothetical protein TERM 1475 1279538 - 1279560 + r 78 -10.6 -2.73554 | opp_overlap 1279538, overlap 1279537 GTTCATAAATAAAAA GGGAGAGC CGTGATT GCTCTCCC ATTATCGTTACTTAA TERM 1476 1279560 - 1279538 - R 100 -10.6 -5.38054 | opp_overlap 1279538 1279537 GTTCATAAATAAAAA GGGAGAGC CGTGATT GCTCTCCC ATTATCGTTACTTAA VF_1155 1280874 - 1279591 - | proton glutamate symport protein TERM 1477 1280559 - 1280537 - G 82 -10.6 -3.53091 | opp_overlap 1280537 ATCGTTCCTGCTAAA TTTGCGTCAG CGC CTGGCGCAAA TATCATACCTACTGT TERM 1478 1280537 - 1280559 + g 83 -12.8 -2.81642 | opp_overlap 1280537 ATCGTTCCTGCTAAA TTTGCGTCAG CGC CTGGCGCAAA TATCATACCTACTGT TERM 1479 1281541 - 1281527 - g 82 -8.6 -4.20932 | opp_overlap 1281521 AATATTCAGCGAAAA CCACAT TAG ATGTGG ATGGCGATATTGTAC VF_1156 1281304 - 1282713 + | chlorohydrolase/deaminase family protein TERM 1480 1282761 - 1282741 - f 90 -11.2 -3.5394 | opp_overlap 1282741 AAACGTTTGTTTAAA GCCAGTTG TTATT CAACTGGC TTTTTTGCTATTTGC TERM 1481 1282741 - 1282761 + F 100 -11.2 -5.32699 | opp_overlap 1282741 AAACGTTTGTTTAAA GCCAGTTG TTATT CAACTGGC TTTTTTGCTATTTGC ycbB 1282826 - 1284373 + | carboxypeptidase ycbK 1284538 - 1285089 + | hypothetical protein TERM 1482 1285129 - 1285109 - T 100 -15.5 -5.09895 | opp_overlap 1285109 TACTTATTGAAAAAA TGGCGACCA ATG TGGTCGCCA TTTTTGTATTCATTA TERM 1483 1285109 - 1285129 + T 100 -15.5 -5.1485 | opp_overlap 1285109 TACTTATTGAAAAAA TGGCGACCA ATG TGGTCGCCA TTTTTGTATTCATTA asnS 1286582 - 1285182 - | asparaginyl-tRNA synthetase TERM 1484 1286752 - 1286740 - H 93 -7.7 -5.40474 | ATTCGTCGAAAAAAA CACCA ATA TGGTG AGGTTATATATACTT TERM 1485 1287189 - 1287177 - g 71 -4.8 -4.62772 | opp_overlap 1287177 TCGAAATTAAAGAAA CCTG TACAG CAGG TTGTACTTACCGCGG sscR 1286849 - 1287211 + | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) TERM 1486 1287255 - 1287236 - f 100 -13.6 -5.04601 | opp_overlap 1287236 CTGAGAAATTAAAAA GGCGCCTA CAAT TAGGCGCC TTTTTTTATATTCAC TERM 1487 1287236 - 1287255 + F 100 -13.6 -5.80817 | opp_overlap 1287236 CTGAGAAATTAAAAA GGCGCCTA CAAT TAGGCGCC TTTTTTTATATTCAC TERM 1488 1288125 - 1288111 - g 90 -4.2 -5.90981 | GTACAGCAAAAAAAA CAGAAC CTA GATCTG ATCCTTAGTGGCGAG TERM 1489 1288337 - 1288363 + G 73 -6.7 -4.16279 | opp_overlap 1288340, overlap 1288340 1288359 ACGATGCGTCTCGAT TAACCGTTG GAACTCCAG CAACGGTTA TTTTAGCCTCGTATC VF_1161 1287634 - 1288791 + | periplasmic component of efflux system VF_1162 1288784 - 1290064 + | outer membrane protein TolC VF_1163 1290061 - 1291278 + | export ABC transporter permease protein TERM 1490 1292351 - 1292363 + G 75 -2.7 -5.2112 | overlap 1292349 GCGGGGGGATGGGGT TAGGT TTA ACTTA TTTTTTAATGCTATT VF_1164 1291282 - 1292565 + | export ABC transporter permease protein TERM 1491 1292862 - 1292878 + G 73 -6.6 -4.21141 | opp_overlap 1292852, overlap 1292852 GAAATCAAAGTATTG GCTTTG TATTT CAAAGC TTTAATTTGTTGGAG macB 1292558 - 1293283 + | macrolide ABC transporter ATP-binding/membrane protein TERM 1492 1293277 - 1293301 + T 82 -5.7 -5.28176 | opp_overlap 1293275, overlap 1293278 CACAGATGAATACTT AGCCTAATACC TAA GGTATTAGACA TTTTTTATGCCTGAC TERM 1493 1293278 - 1293300 + T 81 -9.2 -3.76182 | opp_overlap 1293275, overlap 1293277 ACAGATGAATACTTA GCCTAATACC TAA GGTATTAGAC ATTTTTTATGCCTGA VF_1166 1294283 - 1293306 - | endonuclease/exonuclease/phosphatase family protein sbcD 1294503 - 1295747 + | exonuclease subunit SbcD sbcC 1295744 - 1299424 + | exonuclease, dsDNA, ATP-dependent VF_1169 1299457 - 1299942 + | acyl-CoA hydrolase VF_1170 1300111 - 1300542 + | hypothetical protein VF_1171 1301038 - 1302192 + | tyrosine-specific transport protein VF_1172 1302304 - 1303470 + | tyrosine-specific transport protein VF_1173 1303542 - 1303898 + | putative lipoprotein VF_1174 1303929 - 1304288 + | putative lipoprotein TERM 1494 1304296 - 1304351 + T 95 -12.8 -3.84648 | opp_overlap 1304315, overlap 1304301 1304304 1304315 ATATGTAAATGACTT ATGGTTTTGATATAAAAAATGGCGGG AATT CCCGCCATTTTTTATAACTAATCTAC TTTAATAATATTAAA TERM 1495 1304301 - 1304346 + T 100 -17.9 -3.04415 | opp_overlap 1304315, overlap 1304296 1304304 1304315 TAAATGACTTATGGT TTTGATATAAAAAATGGCGGG AATT CCCGCCATTTTTTATAACTAA TCTACTTTAATAATA TERM 1496 1304304 - 1304343 + T 100 -19.6 -2.73854 | opp_overlap 1304315, overlap 1304301 1304296 1304315 ATGACTTATGGTTTT GATATAAAAAATGGCGGG AATT CCCGCCATTTTTTATAAC TAATCTACTTTAATA TERM 1497 1304315 - 1304332 + T 100 -12.7 -5.28778 | opp_overlap 1304315, overlap 1304304 1304301 1304296 TTTTGATATAAAAAA TGGCGGG AATT CCCGCCA TTTTTTATAACTAAT TERM 1498 1304332 - 1304315 - T 100 -12.7 -5.36441 | opp_overlap 1304315 1304304 1304301 1304296 TTTTGATATAAAAAA TGGCGGG AATT CCCGCCA TTTTTTATAACTAAT VF_1175 1304897 - 1304343 - | hypothetical protein TERM 1499 1305081 - 1305064 - R 100 -11.3 -5.75599 | opp_overlap 1305064 TAAAGCATAAAAAAA GGGACGA TAAA TCGTCCC TTAGTAATGGAATGT TERM 1500 1305064 - 1305081 + r 87 -11.3 -3.21925 | opp_overlap 1305064 TAAAGCATAAAAAAA GGGACGA TAAA TCGTCCC TTAGTAATGGAATGT sdaA 1306467 - 1305106 - | L-serine deaminase I TERM 1501 1305463 - 1305481 + g 71 -3.8 -4.99043 | opp_overlap 1305456 1305455, overlap 1305460 CTGACAACCAACTTC TGCACCAG AGA TTGATGCA TTTTGTTTGTAAAGA TERM 1502 1306485 - 1306502 + r 100 -9.8 -4.4204 | opp_overlap 1306485 AATTACCTCGAATAA GCCCCC AAAAGA GGGGGC TTTATTATCATTATT TERM 1503 1306502 - 1306485 - R 82 -9.8 -3.64259 | opp_overlap 1306485 AATTACCTCGAATAA GCCCCC AAAAGA GGGGGC TTTATTATCATTATT sdaC 1307822 - 1306563 - | serine transporter TERM 1504 1307476 - 1307446 - G 70 -9.8 -2.69951 | overlap 1307445 TTAACCATGAAAGAG TCTACTGTGTTTGT AAT ACCAACACCGTAGA TAAGTACAATCGGAT nudL 1308584 - 1308003 - | NUDIX hydrolase pabB 1309971 - 1308601 - | aminodeoxychorismate synthase, subunit I fumB 1310136 - 1311665 + | anaerobic class I fumarate hydratase (fumarase B) TERM 1505 1311699 - 1311715 + F 100 -7.3 -6.28401 | opp_overlap 1311699 TTAAATAATGTAAAA GCATTCA TTT TGAGTGC TTTTTTTGTTTTTTG VF_1181 1311797 - 1312153 + | putative lipoprotein TERM 1506 1312416 - 1312444 + G 71 -6 -4.20696 | TTGTTTCCAGCTAAA GCCGAAGCGG GCGATAAAG CCGTTTTGGC TTTTAGAGTTCCTGG VF_1182 1312257 - 1313291 + | acriflavin resistance periplasmic protein VF_1183 1313294 - 1314376 + | acriflavin resistance periplasmic protein TERM 1507 1315708 - 1315684 - g 72 -3.5 -5.05113 | opp_overlap 1315687, overlap 1315686 1315703 GTGACACAAACAAAA TGGCCATTGCT AGG AGCAACGGTTA TTGCGGTAACCGCGT TERM 1508 1315914 - 1315902 - g 70 -7.7 -3.6944 | opp_overlap 1315901, overlap 1315884 TCTTGAAGAGAAAGA CCCAT ACA ATGGG ATGATCTTTGTTGTT VF_1184 1314373 - 1317450 + | acriflavin resistance plasma membrane protein TERM 1509 1317480 - 1317506 + F 100 -11 -5.70829 | opp_overlap 1317480 AATAACTGATTAAAA GCTCATATTAGA ATA TCTAGTATGGGC TTTTTTTGTGGTATT TERM 1510 1317506 - 1317480 - f 74 -6.6 -4.32651 | opp_overlap 1317480 AATAACTGATTAAAA GCTCATATTAGA ATA TCTAGTATGGGC TTTTTTTGTGGTATT VF_1185 1317577 - 1317963 + | hypothetical protein TERM 1511 1317974 - 1318009 + T 100 -12 -4.45068 | opp_overlap 1317974 1317979 GTTAATTATTAGAAA TTAAAGGCGATACGGC TTAT GCAATATCGCCTTTAA TTTATTGTTAAGCGT TERM 1512 1318009 - 1317974 - T 100 -14.2 -4.02022 | opp_overlap 1317974, overlap 1317979 GTTAATTATTAGAAA TTAAAGGCGATACGGC TTAT GCAATATCGCCTTTAA TTTATTGTTAAGCGT TERM 1513 1318004 - 1317979 - T 93 -9.7 -4.16182 | opp_overlap 1317974, overlap 1317974 TTATTAGAAATTAAA GGCGATACGGC TTAT GCAATATCGCC TTTAATTTATTGTTA metC 1319207 - 1318017 - | cystathionine beta-lyase VF_1187 1319352 - 1319702 + | hypothetical protein TERM 1514 1319725 - 1319747 + F 81 -7.8 -4.33417 | opp_overlap 1319725 TCACAAAAATCACAA GCCAATAAGA TGA TATTATTGGC TTTATTATCAATAGG TERM 1515 1319747 - 1319725 - f 73 -7.8 -3.78785 | opp_overlap 1319725 TCACAAAAATCACAA GCCAATAAGA TGA TATTATTGGC TTTATTATCAATAGG yiaY 1319944 - 1321089 + | Fe-containing alcohol dehydrogenase TERM 1516 1321125 - 1321144 + F 100 -8.6 -6.00814 | opp_overlap 1321125 AATTAGTTTTAGAAA GGTCTAAC AATA GTTAGGCC TTTTTTTTGATTCTT ribA 1321249 - 1321848 + | GTP cyclohydrolase II TERM 1517 1321877 - 1321894 + F 86 -4.8 -5.66684 | opp_overlap 1321877 ATTAACTGTTAAAAA CCTCAC TTATTT GTGGGG TTTTTTTATGAGTTA TERM 1518 1322312 - 1322324 + G 77 -7.7 -4.30844 | opp_overlap 1322311 1322312 TACCTTATCAACAAT CGGAA GTT TTCCG TTTTGGTAATGCGAT VF_1190 1322059 - 1323312 + | hypothetical protein TERM 1519 1323361 - 1323399 + F 76 -2.5 -5.51612 | gap 1, overlap 1323363 CCTAGAAATAGGTGT TAGCTCAATCAC-ATTTC CCCC GATTTAGTGATTGAGCTC TTTTCTTTTTTCTAT TERM 1520 1323613 - 1323623 + G 84 -6.8 -4.9138 | opp_overlap 1323613 1323612 GCGTAAAAAAAGAGG GGCA GAA TGCC TTTTCTTTGCCTGCT TERM 1521 1324709 - 1324695 - g 70 -7.8 -3.65314 | opp_overlap 1324695 1324703 GCGAATGGGCAAGAA TGGCGA ACG CCGCCA TTGTGGGGACTTGGC VF_1191 1323492 - 1324895 + | thiol oxidoreductase VF_1192 1324906 - 1325916 + | periplasmic lipoprotein VF_1193 1325897 - 1327015 + | hypothetical protein ycbL 1327060 - 1327713 + | metal-binding protein TERM 1522 1328019 - 1328006 - g 74 -3.8 -5.16572 | ACTGAAGTGAAAAAA GCAG CTAAAC CTGC AAAAGTAGCTAAACC VF_1195 1327916 - 1328302 + | hypothetical protein TERM 1523 1328372 - 1328315 - T 71 -6.5 -4.1673 | gap 1, opp_overlap 1328318 1328329 1328337, overlap 1328318 1328327 1328336 1328337 TAATCGTTTAATAAA CTATTTTATAGACACAAAGAAGCCGAGA TTA CCTCGGTTTTTTTGTGCCTTGAAAAT-G ATGTTTAGATAGTAC TERM 1524 1328318 - 1328370 + T 81 -10.8 -2.86391 | opp_overlap 1328315 1328318 1328327 1328336 1328337, overlap 1328329 1328337 TCGTTTAATAAACTA TTTTATAGACACAAAGAAGCCGAG ATTAC CTCGGTTTTTTTGTGCCTTGAAAA TGATGTTTAGATAGT TERM 1525 1328370 - 1328318 - T 74 -9.3 -3.10244 | opp_overlap 1328318 1328329 1328337, overlap 1328315 1328327 1328336 1328337 TCGTTTAATAAACTA TTTTATAGACACAAAGAAGCCGAGA TTA CCTCGGTTTTTTTGTGCCTTGAAAA TGATGTTTAGATAGT TERM 1526 1328361 - 1328327 - T 81 -10.8 -2.90956 | opp_overlap 1328318 1328329 1328337, overlap 1328318 1328315 1328336 1328337 AAACTATTTTATAGA CACAAAGAAGCCGAGA TTA CCTCGGTTTTTTTGTG CCTTGAAAATGATGT TERM 1527 1328329 - 1328359 + T 82 -11.3 -2.53382 | opp_overlap 1328327 1328318 1328315 1328336 1328337, overlap 1328318 1328337 ACTATTTTATAGACA CAAAGAAGCCGAG ATTAC CTCGGTTTTTTTG TGCCTTGAAAATGAT TERM 1528 1328337 - 1328351 + T 93 -7.1 -5.66684 | opp_overlap 1328336 1328327 1328318 1328315 1328337, overlap 1328329 1328318 ATAGACACAAAGAAG CCGAG ATTAC CTCGG TTTTTTTGTGCCTTG TERM 1529 1328445 - 1328420 - T 100 -10.6 -4.98857 | opp_overlap 1328420, overlap 1328424 ATCTAATTATAAAAA TAAAGGGCAT ACTAAG ATGCCCTTTA TTTTTGTCATTCTGA TERM 1530 1328420 - 1328445 + T 100 -10.6 -5.01535 | opp_overlap 1328420 1328424 ATCTAATTATAAAAA TAAAGGGCAT ACTAAG ATGCCCTTTA TTTTTGTCATTCTGA TERM 1531 1328441 - 1328424 - T 88 -7 -5.00267 | opp_overlap 1328420, overlap 1328420 AATTATAAAAATAAA GGGCAT ACTAAG ATGCCC TTTATTTTTGTCATT VF_1196 1329386 - 1328472 - | hypothetical protein TERM 1532 1329510 - 1329472 - R 100 -12.7 -4.37863 | overlap 1329469 ACATAAAAATAAGAA GAGCCAGTTTATCTA GGTTAAATG TAGACAAACTGGCTC AATAAAAGATCAATA tyrP 1330707 - 1329535 - | tyrosine transporter yfaY 1330958 - 1332190 + | putative competence-damage protein TERM 1533 1332224 - 1332249 + T 100 -10.5 -5.47914 | opp_overlap 1332224 CATAGAACACAATAA GCCCAATAGGA TAAC TCTTGTTGGGC TTTTTTATGCTTTTT VF_1199 1332532 - 1332254 - | iron-sulfur cluster-binding protein, putative VF_1200 1334686 - 1332611 - | GGDEF domain-containing protein TERM 1534 1333787 - 1333801 + g 77 -5 -4.92757 | overlap 1333785 1333783 TTTCTCACGAATATT GATATC ATC GATGTC TTTTATTCTTAATAG TERM 1535 1334494 - 1334480 - G 74 -4.2 -5.16237 | AATGGCATCAAAAAA GACACT AAT AGAGTC AATGAGCTTTCCTGA TERM 1536 1334870 - 1334851 - gR 100 -10.7 -5.20333 | opp_overlap 1334851 1334867 TACTGATAATAAAAA GCCGAGC ATGAAA GCTCGGC TTTGGCGTTTATATA TERM 1537 1334851 - 1334870 + Gr 90 -10.7 -3.75418 | opp_overlap 1334851, overlap 1334867 TACTGATAATAAAAA GCCGAGC ATGAAA GCTCGGC TTTGGCGTTTATATA nrdB 1336026 - 1334893 - | ribonucleotide-diphosphate reductase subunit beta VF_2607 1334735 - 1334956 + | hypothetical protein TERM 1538 1336179 - 1336160 - TR 89 -10.7 -3.58511 | opp_overlap 1336157 1336156 1336154, overlap 1336154 AACTAAAGATGATAA GCCCGCT AATGAA AGCGGGC TAAATATTAATGTGA nrdA 1338475 - 1336199 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1539 1336346 - 1336358 + g 73 -7.7 -3.9642 | TAATAACAGCTTCAT TGGCA CTT TGCCA TTTGGTTGAATGTTT TERM 1540 1336567 - 1336557 - G 79 -6.8 -4.57474 | opp_overlap 1336557 TTAACTGATACAAAA CCAC GTG GTGG TTCAATACCGTTAGT ubiG 1339674 - 1338970 - | 3-demethylubiquinone-9 3-methyltransferase TERM 1541 1341730 - 1341716 - g 73 -7.2 -3.97209 | GCAACTAAGATGAAA GATGAA GAT TTCATC GAACGTCTACTTGTT gyrA 1340000 - 1342636 + | DNA gyrase (type II topoisomerase), subunit A TERM 1542 1342663 - 1342684 + T 100 -14.5 -5.71983 | opp_overlap 1342663 GTTTTCAAATAAAAA GCCCGCTTA GAAA TAAGCGGGC TTTTTTTATCATTAA TERM 1543 1342684 - 1342663 - T 100 -14.5 -5.27335 | opp_overlap 1342663 GTTTTCAAATAAAAA GCCCGCTTA GAAA TAAGCGGGC TTTTTTTATCATTAA VF_2608 1342917 - 1342696 - | hypothetical protein TERM 1544 1343077 - 1343048 - R 82 -8.7 -4.08216 | opp_overlap 1343055 1343057, overlap 1343036 1343055 TTATCTTTTTTAAAA TAAAAAAGAGTGC AGAA GCACCCTTTTATA AGTCATTATTTAATT TERM 1545 1343070 - 1343055 - R 95 -6.8 -5.79595 | opp_overlap 1343055 1343057, overlap 1343036 1343048 TTTTAAAATAAAAAA GAGTGC AGAA GCACCC TTTTATAAGTCATTA VF_1205 1343808 - 1343101 - | hypothetical protein TERM 1546 1343372 - 1343388 + g 85 -6.7 -5.13741 | opp_overlap 1343375 ACTAATGGGCGCTGA CAATTAA TCA TTAATTG TTTTTCTTCCATTAA VF_1206 1344038 - 1344586 + | PAP2 family phosphoesterase yegD 1344649 - 1346001 + | putative chaperone TERM 1547 1346029 - 1346054 + F 100 -13.4 -3.65812 | TATTAATTGTTAATT TTCGAGCTGC ATTGTC GCAGCTCGAA TTGTATTAGGAAAAG yqfB 1346073 - 1346390 + | hypothetical protein VF_1209 1346409 - 1347491 + | membrane metalloprotease VF_1210 1347541 - 1348287 + | putative Gram-positive sporulation control protein Spo0M TERM 1548 1348328 - 1348358 + T 95 -12.8 -3.69618 | opp_overlap 1348330 1348334, overlap 1348330 1348334 GAATGATTAAATGAA AATAAAGCTCTCTA ATT TAGAGAGCTTTATG TATTTTAAGCTTCGA TERM 1549 1348356 - 1348330 - T 100 -15.4 -4.59376 | opp_overlap 1348330 1348328 1348334, overlap 1348334 ATGATTAAATGAAAA TAAAGCTCTCTA ATT TAGAGAGCTTTA TGTATTTTAAGCTTC TERM 1550 1348330 - 1348356 + T 100 -15.4 -3.42437 | opp_overlap 1348330 1348334, overlap 1348328 1348334 ATGATTAAATGAAAA TAAAGCTCTCTA ATT TAGAGAGCTTTA TGTATTTTAAGCTTC TERM 1551 1348352 - 1348334 - T 100 -11.8 -4.82998 | opp_overlap 1348334 1348330 1348328, overlap 1348330 TTAAATGAAAATAAA GCTCTCTA ATT TAGAGAGC TTTATGTATTTTAAG TERM 1552 1348334 - 1348352 + T 100 -11.8 -4.33956 | opp_overlap 1348330 1348334, overlap 1348330 1348328 TTAAATGAAAATAAA GCTCTCTA ATT TAGAGAGC TTTATGTATTTTAAG VF_1211 1348653 - 1348363 - | hypothetical protein VF_1212 1349070 - 1348675 - | lactoylglutathione lyase VF_1213 1349460 - 1349170 - | hypothetical protein TERM 1553 1350615 - 1350597 - g 79 -6.7 -4.5774 | TACCAAGAAGTAAAA GGCCCAT TAATG ATGGACC GCGTACTTTGGGAAC thrS 1349715 - 1351643 + | threonyl-tRNA synthetase infC 1351728 - 1352198 + | protein chain initiation factor IF-3 TERM 1554 1352248 - 1352221 - f 70 -8.4 -3.19081 | opp_overlap 1352222, overlap 1352217 1352222 1352224 CATTCAAGTAATACA GCAGGGTAGCTG TTCG CAGTTACCCTGT TTTATTCGCCTAATT TERM 1555 1352222 - 1352247 + F 100 -14.1 -4.66318 | opp_overlap 1352222 1352221 1352217 1352224 ATTCAAGTAATACAG CAGGGTAGCTG TTCG CAGTTACCCTG TTTTATTCGCCTAAT TERM 1556 1352247 - 1352222 - f 84 -11.9 -2.50966 | opp_overlap 1352222, overlap 1352221 1352217 1352224 ATTCAAGTAATACAG CAGGGTAGCTG TTCG CAGTTACCCTG TTTTATTCGCCTAAT rpmI 1352306 - 1352500 + | 50S ribosomal protein L35 rplT 1352542 - 1352895 + | 50S ribosomal protein L20 TERM 1557 1352929 - 1352946 + F 100 -11.3 -5.64274 | opp_overlap 1352929 TTTAAGACTAAGAAA GGAGAGC ACTA GCTCTCC TTTTTTTATGCCTGC TERM 1558 1352946 - 1352929 - f 100 -11.3 -4.33153 | opp_overlap 1352929 TTTAAGACTAAGAAA GGAGAGC ACTA GCTCTCC TTTTTTTATGCCTGC VF_1219 1353106 - 1354425 + | oxidoreductase NAD-binding domain-containing protein TERM 1559 1354456 - 1354479 + T 79 -3.8 -5.4505 | opp_overlap 1354456 AACCTAGATACTAAA GAGCCAAC CTAAATTT GTCGGCTC TTTTTTATTGAAAAA hmuV 1355284 - 1354505 - | hemin importer ATP-binding subunit hmuU 1356321 - 1355284 - | hemin transport system permease protein HmuU hmuT 1357179 - 1356331 - | hemin-binding periplasmic protein HmuT precursor exbD1 1357595 - 1357176 - | TonB system transport protein ExbD1 exbB1 1358275 - 1357592 - | TonB system transport protein ExbB1 tonB1 1359061 - 1358297 - | TonB1 protein TERM 1560 1358732 - 1358745 + g 76 -2.4 -5.47846 | TGGCTTTGAAATCGT TGGT TTTTTT ACCA TTTTCTTTTTTGGTT TERM 1561 1360437 - 1360416 - g 73 -9.5 -3.20348 | TCTATCAATACTTAA TGCCACTAT TTAA ACAGTGGCA AAACAATGGATTAGT hutW 1359206 - 1360582 + | coproporphyrinogen III oxidase TERM 1562 1361071 - 1361042 - g 82 -6.5 -4.9725 | opp_overlap 1361042 AGGTCGAGATAAAAA GCGCCAACTTATT CCTG AACAAGTTGAAGC GTTTAATGTCTTAAA huvX 1360566 - 1361102 + | HuvX protein hutZ 1361155 - 1361682 + | HutZ protein TERM 1563 1361720 - 1361735 + F 86 -5.4 -5.76633 | opp_overlap 1361720 GAATTTAAGACTAAA GCTCAA TATT TTGGGC TTTTTTTGTATCTGG TERM 1564 1362543 - 1362563 + G 71 -7.5 -3.83026 | opp_overlap 1362543 GCAATATGGTGAAAC CGATGCGCA ATT TGTGCAACG TTTAATGTCAGAAGA VF_1229 1362070 - 1364127 + | VgrG protein VF_1230 1364127 - 1364981 + | hypothetical protein VF_1231 1364978 - 1368238 + | hypothetical protein VF_1232 1368225 - 1368956 + | hypothetical protein VF_1233 1368986 - 1369699 + | hypothetical protein TERM 1565 1369734 - 1369719 - T 100 -7.5 -5.90231 | opp_overlap 1369719 ACAAACATAAAAAAA GCGGC GATGAT GCCGC TTTGAACTAGCCAAT TERM 1566 1369719 - 1369734 + T 73 -8.2 -3.60098 | opp_overlap 1369719 ACAAACATAAAAAAA GCGGCG ATGA TGCCGC TTTGAACTAGCCAAT hutA 1371967 - 1369769 - | heme transport protein HutA TERM 1567 1370715 - 1370761 + g 71 -6.7 -4.12037 | gap 1 AAAATACCGTATTGA GTCATTGTTGCATCAGG-CATA TCGG TATGACCTGGTCCAACGGTGCC TTTGTCGTATTTATA pheS 1372287 - 1373270 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1568 1374021 - 1374035 + G 70 -8.6 -3.36452 | overlap 1374016 GTTGTGGTATTCGCT CAATCG ATG CGATTG TTGATATTACAAACT pheT 1373288 - 1375675 + | phenylalanyl-tRNA synthetase subunit beta TERM 1569 1375707 - 1375734 + F 100 -11.4 -6.09888 | opp_overlap 1375707 1375705 CGAAAGAATATAAGA TCCAGTACTGAC ATTT GTTGGTACTGGA TTTTTTTTATTCAAA TERM 1570 1376216 - 1376234 + F 77 -9.6 -3.00022 | ACTGTTCAGTTTCCA GTTACAGC AAT GCTGTGAC TCTGTCTAACGTAAC ihfA 1376265 - 1376561 + | integration host factor subunit alpha TERM 1571 1376591 - 1376617 + F 95 -8.8 -5.49234 | opp_overlap 1376591 GCGAACAAGAGAGAA GCCGTGTGAT GCAGTTA ATCACATGGC TTTTTTATTGCCTGT astE 1376903 - 1377895 + | succinylglutamate desuccinylase VF_1239 1377994 - 1379778 + | oligoendopeptidase F TERM 1572 1379838 - 1379789 - T 89 -13.4 -2.51627 | opp_overlap 1379802, overlap 1379802 AATAGAATTGAACAG TAAATAATAAAAAGCGCCTC-ACT GAAA AGTAGAGGCGCTTTTT-TTATCTA TCAAACTTAAACTAA TERM 1573 1379802 - 1379826 + T 100 -10.8 -5.76633 | gap 1, opp_overlap 1379802 1379789 AGTAAATAATAAAAA GCGCCTC-ACT GAAA AGTAGAGGCGC TTTTTTTATCTATCA TERM 1574 1379826 - 1379802 - T 100 -10.8 -5.39905 | gap 1, opp_overlap 1379802, overlap 1379789 AGTAAATAATAAAAA GCGCCTC-ACT GAAA AGTAGAGGCGC TTTTTTTATCTATCA yajQ 1380342 - 1379860 - | nucleotide-binding protein aroH 1381411 - 1380359 - | phospho-2-dehydro-3-deoxyheptonate aldolase VF_1242 1381620 - 1382504 + | phosphoenolpyruvate synthase TERM 1575 1382533 - 1382561 + T 100 -10.4 -5.74122 | opp_overlap 1382533 AGTAGCAATAAAAAA CGCCTTTATTTC GTTAA GCAATAAAGGCG TTTTTTTGTATCATA TERM 1576 1382561 - 1382533 - T 100 -10.4 -5.52023 | opp_overlap 1382533 AGTAGCAATAAAAAA CGCCTTTATTTC GTTAA GCAATAAAGGCG TTTTTTTGTATCATA VF_1243 1383942 - 1382587 - | hypothetical protein VF_1244 1383960 - 1384868 + | hypothetical protein TERM 1577 1384915 - 1384886 - T 88 -7.1 -5.08824 | opp_overlap 1384888, overlap 1384888 TTTTTACCTAAAAAA TAGCCCGTAACTA TTCC TGGTCACGGGCTT TGGGAAACGGCTCAT TERM 1578 1384913 - 1384888 - T 93 -9.7 -4.17608 | opp_overlap 1384888, overlap 1384886 TTTACCTAAAAAATA GCCCGTAACTA TTCC TGGTCACGGGC TTTGGGAAACGGCTC TERM 1579 1384888 - 1384913 + T 82 -9.7 -3.53224 | opp_overlap 1384888 1384886 TTTACCTAAAAAATA GCCCGTAACTA TTCC TGGTCACGGGC TTTGGGAAACGGCTC VF_1245 1386580 - 1385030 - | GGDEF domain-containing protein TERM 1580 1386994 - 1387024 + r 87 -12.7 -3.08746 | opp_overlap 1387001, overlap 1387001 GCACCATTATTTAAA CGAAGAAGCCCAC CTAGT GTGGGCTTTTTTG TATCTGTGATTTGCT TERM 1581 1387001 - 1387017 + r 100 -9.4 -5.4492 | opp_overlap 1387001, overlap 1386994 TATTTAAACGAAGAA GCCCAC CTAGT GTGGGC TTTTTTGTATCTGTG TERM 1582 1387017 - 1387001 - R 85 -9.4 -3.90425 | opp_overlap 1387001 1386994 TATTTAAACGAAGAA GCCCAC CTAGT GTGGGC TTTTTTGTATCTGTG ompT 1387985 - 1387074 - | outer membrane protease TERM 1583 1387615 - 1387625 + g 81 -5.4 -5.06103 | overlap 1387616 GTGGTATGTAAGCTC GCTT GAT AAGC TTTTTTCAAGGTTGT VF_1247 1388410 - 1388841 + | lipoprotein precursor TERM 1584 1388888 - 1388860 - T 78 -10.4 -2.76509 | opp_overlap 1388865, overlap 1388865 TGTTAAATAAGTAAC GAAAAGCCGCTA ATCAA TAGCGGCTTTTT TTATGGTTTGCGGAG TERM 1585 1388883 - 1388865 - T 100 -10.3 -4.52101 | opp_overlap 1388865, overlap 1388860 AATAAGTAACGAAAA GCCGCTA ATCAA TAGCGGC TTTTTTTATGGTTTG TERM 1586 1388865 - 1388883 + T 100 -10.3 -5.75599 | opp_overlap 1388860 1388865 AATAAGTAACGAAAA GCCGCTA ATCAA TAGCGGC TTTTTTTATGGTTTG VF_1248 1389024 - 1388911 - | cystathionine beta-lyase VF_2609 1389370 - 1389200 - | hypothetical protein TERM 1587 1389297 - 1389319 + g 76 -2.1 -5.38958 | opp_overlap 1389297 TTTGAGCATATTAAA TTAACAG ATTGATTTC CTGTTAA TTTTTCTTTATCAAT TERM 1588 1390049 - 1390031 - g 83 -6.1 -5.06816 | AGGGCTTAAGAAAAA CTCATTA TTAGG TAATGAG GTTGAACAGAAGCAA VF_1249 1389615 - 1390529 + | phosphoenolpyruvate phosphomutase VF_1250 1390529 - 1391818 + | C4-dicarboxylate anaerobic carrier TERM 1589 1392283 - 1392273 - g 71 -4 -4.86731 | GGTTTTTAAACAAAA TAGA GGT TCTA GCGGAAAAGGCATTT VF_1251 1391827 - 1392831 + | hypothetical protein allD 1392841 - 1393788 + | ureidoglycolate dehydrogenase TERM 1590 1393867 - 1393885 + T 100 -10.3 -5.43621 | opp_overlap 1393867 GCATGATGATAAAAA GCCGCTA ATTAA TAGCGGC TTTTTTATGGTTTGT TERM 1591 1393885 - 1393867 - T 100 -10.3 -4.93296 | opp_overlap 1393867 GCATGATGATAAAAA GCCGCTA ATTAA TAGCGGC TTTTTTATGGTTTGT VF_1253 1395021 - 1393912 - | cystathionine beta-lyase VF_1254 1396551 - 1395094 - | Na+/H+ antiporter NhaC TERM 1592 1396512 - 1396496 - G 72 -9.5 -2.98881 | overlap 1396489 AGACCAAACATTACA GCAATAG GAG CTATTGC TAATGCAAAGGATGG VF_1255 1397710 - 1396688 - | transcriptional repressor cpdP 1397914 - 1398906 + | 3',5'-cyclic-nucleotide phosphodiesterase TERM 1593 1398953 - 1398924 - T 100 -10.9 -4.63184 | AAGTTATTGTAAAAA TGGATATGGTC AATACAAA GACCATATCCA CTCCACGCATTTGTT VF_1257 1400972 - 1398978 - | hypothetical protein TERM 1594 1400110 - 1400142 + g 74 -4.4 -4.93968 | gap 1, opp_overlap 1400117 1400119 GTACTGCTTTCACTC GTTAACATATCAATA CCAT TATCGATA-GTTAAC TTTTTAGTTGTGCCT VF_1258 1401251 - 1401661 + | acyl-CoA hydrolase TERM 1595 1401759 - 1401724 - T 90 -8.4 -5.27779 | opp_overlap 1401727 1401729, overlap 1401727 1401729 TTTAACATCAAAAAA GAACAGCCTGCTCAAT GAAA ATTGAGTAGGCTATTT TTTATCTATAATAGG TERM 1596 1401756 - 1401727 - T 100 -10.1 -4.71318 | opp_overlap 1401727 1401729, overlap 1401724 1401729 AACATCAAAAAAGAA CAGCCTGCTCAAT GAAA ATTGAGTAGGCTA TTTTTTATCTATAAT TERM 1597 1401727 - 1401756 + T 100 -10.1 -5.43414 | opp_overlap 1401724 1401727 1401729, overlap 1401729 AACATCAAAAAAGAA CAGCCTGCTCAAT GAAA ATTGAGTAGGCTA TTTTTTATCTATAAT TERM 1598 1401729 - 1401754 + T 100 -12.7 -4.34353 | opp_overlap 1401727 1401724 1401729, overlap 1401727 CATCAAAAAAGAACA GCCTGCTCAAT GAAA ATTGAGTAGGC TATTTTTTATCTATA TERM 1599 1401754 - 1401729 - T 93 -10.5 -3.93875 | opp_overlap 1401729 1401727, overlap 1401727 1401724 CATCAAAAAAGAACA GCCTGCTCAAT GAAA ATTGAGTAGGC TATTTTTTATCTATA VF_1259 1402248 - 1401796 - | hypothetical protein TERM 1600 1402263 - 1402299 + H 72 -4.7 -4.73614 | opp_overlap 1402266 1402270, overlap 1402264 1402266 1402270 TTCTTATCTCCTGAT TAATAAATTAAACTAAA CTG TTTAGTCTAATTTATCG TTTATTTTGATACTG TERM 1601 1402296 - 1402266 - H 83 -10.8 -3.14564 | opp_overlap 1402266 1402264 1402263 1402270, overlap 1402270 TTATCTCCTGATTAA TAAATTAAACTAAA CTG TTTAGTCTAATTTA TCGTTTATTTTGATA TERM 1602 1402266 - 1402296 + H 73 -8.6 -3.27205 | opp_overlap 1402266 1402270, overlap 1402264 1402263 1402270 TTATCTCCTGATTAA TAAATTAAACTAAA CTG TTTAGTCTAATTTA TCGTTTATTTTGATA TERM 1603 1402292 - 1402270 - H 75 -7.2 -4.24342 | opp_overlap 1402270 1402266 1402264 1402263, overlap 1402266 CTCCTGATTAATAAA TTAAACTAAA CTG TTTAGTCTAA TTTATCGTTTATTTT VF_1260 1402379 - 1402939 + | TetR family transcriptional regulator TERM 1604 1403076 - 1403097 + G 77 -8 -4.25104 | ATATCGTTACCTTTG GTGAGGGC AGGGTC GCCCTTAC TTTTGGTGAGCAAAA VF_1261 1402973 - 1403353 + | lactoylglutathione lyase family protein TERM 1605 1403493 - 1403471 - f 73 -7.2 -3.98173 | opp_overlap 1403471, overlap 1403476 TGAAATTCAACTAAA TTAAACTAAA CGG TTCAGTTTAA TTTTAAGATAAATCA VF_1262 1403532 - 1404107 + | glutaredoxin VF_1263 1404109 - 1404795 + | mercuric reductase TERM 1606 1404885 - 1404906 + F 100 -7.4 -6.34616 | opp_overlap 1404878 1404885 1404888 TAAATTAATTAAGAA GAAGCATT CTCCCC AATGCTTC TTTTTTTTATTTTCG TERM 1607 1404906 - 1404885 - f 73 -7.4 -3.87638 | opp_overlap 1404885, overlap 1404878 1404888 TAAATTAATTAAGAA GAAGCATT CTCCCC AATGCTTC TTTTTTTTATTTTCG ssnA 1404944 - 1406380 + | chlorohydrolase/aminohydrolase VF_1265 1406520 - 1406840 + | hypothetical protein TERM 1608 1406846 - 1406875 + T 100 -11.6 -5.30616 | opp_overlap 1406844 1406843 1406846 AGCTTACTAAAAGGA TGGGCAAAGGTA TTTATT TACTTTTGCCCA TTTTTATTTAGATAA TERM 1609 1406875 - 1406846 - T 74 -9.4 -3.13772 | opp_overlap 1406846, overlap 1406844 1406843 AGCTTACTAAAAGGA TGGGCAAAGGTA TTTATT TACTTTTGCCCA TTTTTATTTAGATAA yeeO 1408226 - 1406883 - | multidrug efflux system TERM 1610 1408265 - 1408244 - R 73 -4.4 -5.00616 | overlap 1408246 TTTGTCCTTAAAAAA GGGAAGAG AGGATG CTCTTCAC CATACAGCTAGGAAG TERM 1611 1408998 - 1409011 + r 84 -5.3 -5.5112 | opp_overlap 1408991, overlap 1408993 ATACAATACGTTCAA CTTCA ACGT TGAAG TTTTTTCTTACTAAG umuD 1410068 - 1409661 - | DNA polymerase V, subunit D TERM 1612 1410011 - 1409996 - G 72 -4.7 -4.75288 | CGAGATCAAAAGAAA GCTGA GAATAT TCAGC AGCAGGGCTTTCAAA TERM 1613 1410098 - 1410073 - R 78 -7 -4.45485 | opp_overlap 1410073 ATTACATTCATAAAA TAACACTGTA TATAAG TACAGCGTTA TTTTGGGTGTGAATG VF_1270 1410925 - 1410161 - | cyclohexadienyl dehydratase precursor TERM 1614 1411486 - 1411496 + G 74 -4 -5.07486 | CATGGCAACGGTTTT TCAA GCA TTGA TTTTTCTTACCGCTG TERM 1615 1411724 - 1411744 + G 70 -3.3 -4.91852 | AGTGGTGAAAAATTG GTTATCGGT ATT ATTGGTAAC TTTATTTTTGGTGCA VF_1271 1411214 - 1412095 + | hypothetical protein yeiP 1412181 - 1412747 + | elongation factor P TERM 1616 1412825 - 1412790 - T 100 -16.4 -4.55887 | opp_overlap 1412795, overlap 1412795 TGTTAAAAACATAAA GAAAAGGCCAGCTATT CGTT AATAGCTGGCCTTTTT TATGTCTTGTATTTT TERM 1617 1412795 - 1412820 + T 100 -16.3 -5.48787 | opp_overlap 1412790 1412795 AAAACATAAAGAAAA GGCCAGCTATT CGTT AATAGCTGGCC TTTTTTATGTCTTGT TERM 1618 1412820 - 1412795 - T 100 -16.3 -5.15682 | opp_overlap 1412795, overlap 1412790 AAAACATAAAGAAAA GGCCAGCTATT CGTT AATAGCTGGCC TTTTTTATGTCTTGT VF_1273 1414024 - 1412846 - | hypothetical protein TERM 1619 1413326 - 1413316 - G 81 -6.8 -4.72986 | opp_overlap 1413315 CAGTCGTACCAAAAA TGGC TTC GCCA ATGTGTAAGCCGATA TERM 1620 1414052 - 1414092 + r 76 -9.9 -2.90813 | overlap 1414049 ACAGCTTGATGTATG GTACCAATCTAAGTGTATT TAC GATTTACTTAGATTGGCAC TAATTTAAAAACGTA rsmF 1415479 - 1414112 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 1621 1415670 - 1415646 - R 82 -5.7 -5.31855 | opp_overlap 1415646 GATGAATAAGAAAAA GGCAGTTGA ATGAACA TCAACAGCC TTATTTAGTTAACTC pqiB 1418331 - 1415695 - | paraquat-inducible protein B TERM 1622 1416802 - 1416820 + g 80 -6 -4.66609 | TGTTTTAAATTGTGC CAGCTC AGCAAGA GAGCTG TTTTTAAATAGGGTA TERM 1623 1417354 - 1417365 + g 73 -2.2 -5.31275 | CTCAACAGTGGCAGA GGCA ATAA TGTC TTTTTTATCATCAGA pqiA 1419535 - 1418309 - | paraquat-inducible protein A TERM 1624 1418916 - 1418936 + g 74 -6.1 -4.41348 | GGGTCGACAATAGGG GCTTCAGTA TCC TGCTGATGC TTTCTTTGCCAAACA VF_1277 1421346 - 1419553 - | transporter TERM 1625 1420877 - 1420865 - G 71 -4.8 -4.55673 | overlap 1420868 AAAGAGACGATAAAA CGAC TTAGT GTCG GACCAAGGAACTTAT yebR 1421443 - 1421895 + | hypothetical protein TERM 1626 1422400 - 1422389 - g 75 -5.8 -4.77719 | CAAAAGCTAAGAAAA CAGC TCGT GCTG CTACTCCACCTAAGC proQ 1422001 - 1422627 + | putative solute/DNA competence effector prc 1422645 - 1424666 + | carboxy-terminal protease TERM 1627 1424690 - 1424710 + F 100 -10.5 -5.76633 | opp_overlap 1424690 TGAATTATTTTAAAA CAGAAGTCA TGA TGGCTTCTG TTTTTTTATGTCTAA TERM 1628 1424710 - 1424690 - f 81 -8.3 -4.17023 | opp_overlap 1424690 TGAATTATTTTAAAA CAGAAGTCA TGA TGGCTTCTG TTTTTTTATGTCTAA VF_1281 1424718 - 1425461 + | hypothetical protein pepN 1425599 - 1428202 + | aminopeptidase N TERM 1629 1428247 - 1428227 - f 83 -8.3 -4.30978 | opp_overlap 1428227 CTTAATTCATGAAAA TGGTCAGTA TTT TACTGGCCA TTTTTTTATTTAAGA TERM 1630 1428227 - 1428247 + F 100 -10.5 -5.95539 | opp_overlap 1428227 CTTAATTCATGAAAA TGGTCAGTA TTT TACTGGCCA TTTTTTTATTTAAGA VF_1283 1428314 - 1428538 + | hypothetical protein TERM 1631 1428893 - 1428916 + G 71 -7.6 -3.81461 | GTCTTTGGAACCACT TATCTGATGT TAAA ATATCAGATA TTTCGGTTCGTGTTT TERM 1632 1430031 - 1430013 - g 73 -5.4 -4.51378 | overlap 1430008 ACGTATATTACAAAA TTATTTTG GCT CAAAACAA GAAGTTGAATTTACG VF_1284 1428697 - 1433535 + | NAD-specific glutamate dehydrogenase TERM 1633 1433584 - 1433609 + F 100 -9.1 -5.4505 | opp_overlap 1433584 TTTGCTCTTCTATAA GGAAAGTGATT TTTT ATTCACTTTCC TTTTTTATTACCCCG TERM 1634 1433609 - 1433584 - f 77 -9.1 -3.28712 | opp_overlap 1433584 TTTGCTCTTCTATAA GGAAAGTGATT TTTT ATTCACTTTCC TTTTTTATTACCCCG pyrD 1433805 - 1434815 + | dihydroorotate dehydrogenase 2 TERM 1635 1434861 - 1434881 + F 100 -10.5 -5.84381 | opp_overlap 1434861 AGTGATTTTAATAAA GGGGAGAAT AAT ATTTTCCCC TTTTTTTATTGCTAA TERM 1636 1434881 - 1434861 - f 81 -8.3 -4.18488 | opp_overlap 1434861 AGTGATTTTAATAAA GGGGAGAAT AAT ATTTTCCCC TTTTTTTATTGCTAA ycbW 1434951 - 1435574 + | hypothetical protein TERM 1637 1438150 - 1438140 - g 70 -5.4 -4.4267 | CTTGAAAACTTAAAA CGTA TGC TACG TGAGAACGGTACTAT rlmL 1436169 - 1438325 + | 23S rRNA m(2)G2445 methyltransferase VF_1288 1438332 - 1438574 + | glutaredoxin-like domain-containing protein uup 1438555 - 1440465 + | ABC transporter ATPase component TERM 1638 1440513 - 1440543 + G 77 -8.4 -3.90318 | ACATTAGCTGTTTTG GTGTCTGC-TGCGC TTCCT GCGCAAGCAG-CAC TTTATAAAGTGGTGG VF_1290 1440474 - 1442111 + | hypothetical protein TERM 1639 1442166 - 1442126 - f 75 -8.3 -3.84278 | opp_overlap 1442132, overlap 1442119 1442128 1442132 AAACTTAATTAATAA GATTAAGCCTGAAGTCACA TTA TGTGGCTTCAGGCTTTTTT TATACTTGAAAAACA TERM 1640 1442164 - 1442128 - f 87 -10.9 -3.4945 | opp_overlap 1442132, overlap 1442119 1442126 1442132 ACTTAATTAATAAGA TTAAGCCTGAAGTCACA TTA TGTGGCTTCAGGCTTTT TTTATACTTGAAAAA TERM 1641 1442160 - 1442132 - f 100 -16.1 -3.48182 | opp_overlap 1442132, overlap 1442128 1442126 AATTAATAAGATTAA GCCTGAAGTCACA TTA TGTGGCTTCAGGC TTTTTTTATACTTGA TERM 1642 1442132 - 1442160 + F 100 -18.3 -5.71983 | opp_overlap 1442132 1442128 1442126 AATTAATAAGATTAA GCCTGAAGTCACA TTA TGTGGCTTCAGGC TTTTTTTATACTTGA VF_1291 1442312 - 1442485 + | ribosome modulation factor TERM 1643 1442513 - 1442537 + T 100 -11.6 -5.28826 | opp_overlap 1442513 AAAAGAATTTTAAAA TTAAAGCCTC TATAT GAGGCTTTAA TTTTTTCTAGAGTTT TERM 1644 1442537 - 1442513 - T 100 -11.6 -4.26634 | opp_overlap 1442513 AAAAGAATTTTAAAA TTAAAGCCTC TATAT GAGGCTTTAA TTTTTTCTAGAGTTT TERM 1645 1442668 - 1442652 - T 93 -8 -5.61596 | opp_overlap 1442652 AGGGCGATAAAAAAA GCTAGC ACGAA GCTAGC TTTTAATCATTCTAA TERM 1646 1442652 - 1442668 + T 83 -8 -4.37527 | opp_overlap 1442652 AGGGCGATAAAAAAA GCTAGC ACGAA GCTAGC TTTTAATCATTCTAA fabA 1443211 - 1442693 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 1647 1443281 - 1443297 + r 82 -8.7 -3.91084 | opp_overlap 1443271 ATCAAGTCGGATCAG CGCTGGT TAA ACCAGTG TTTAATTCGACATAA VF_1293 1444947 - 1443277 - | ATP-dependent protease (Lon-like) ycbG 1445128 - 1445574 + | hypothetical protein TERM 1648 1445562 - 1445578 + T 72 -2.9 -5.30155 | opp_overlap 1445562, overlap 1445563 AGCAGACTTACATGA GCTCCTG AAA TAGGAGG TTTTTTCATTGCTCC TERM 1649 1445645 - 1445608 - T 81 -10.9 -2.6627 | opp_overlap 1445604 1445607 1445608, overlap 1445607 CTAATGCACTATAAC TTGATTGAGTTATTTAA TTAA TCAAATAACTCAATCAC TAGCTTATTGTTTTT VF_1295 1446179 - 1445625 - | hypothetical protein TERM 1650 1445810 - 1445822 + g 79 -4.9 -5.04325 | GCGGTAATTCGCCAT TTTGA TCT TCAAA TTTTTCTAATTTAAG TERM 1651 1446685 - 1446634 - R 80 -7 -4.4767 | gap 1, opp_overlap 1446635, overlap 1446636 GTATTTACCATAAAA TAGCTAATAATCATTAAAT-AATAC TTC GTATTTATCTATTGATTATTAGCCT CATTCTTACAAGCTA TERM 1652 1446683 - 1446636 - R 91 -11.8 -3.84585 | gap 1, opp_overlap 1446635, overlap 1446634 ATTTACCATAAAATA GCTAATAATCATTAAAT-AATAC TTC GTATTTATCTATTGATTATTAGC CTCATTCTTACAAGC VF_1296 1448785 - 1446707 - | hybrid sensory histidine kinase TERM 1653 1446994 - 1447006 + g 70 -3.3 -4.84761 | TACTGACTATTGATA CATGG TGA CCTTG TTTTTCTAGCAATAT VF_1297 1449979 - 1448795 - | hypothetical protein TERM 1654 1449229 - 1449240 + g 88 -3 -5.95539 | ATTGAGCCATGTTTT CTAA TAAA TTAG TTTTTTTGTTTAACA VF_1298 1450532 - 1450077 - | hypothetical protein ccoN 1450804 - 1452234 + | cytochrome c oxidase, cbb3-type, subunit I ccoO 1452247 - 1452858 + | cytochrome c oxidase, cbb3-type, subunit II TERM 1655 1452981 - 1452962 - g 85 -2.9 -5.77571 | gap 1, overlap 1452966 AGTAAAAAACAAAAA GCACGCTT TGACG AAGC-TGC GAATTTAGTTTTTGC ccoQ 1452869 - 1453054 + | cytochrome oxidase component FixQ ccoP 1453051 - 1454022 + | cytochrome c oxidase, cbb3-type, subunit III TERM 1656 1454030 - 1454055 + F 82 -7.6 -4.54297 | opp_overlap 1454033, overlap 1454028 1454033 ACAAATAAAATAATA AAAGCCTCTG TATCAT CAGAGGCTTA TTCTTTTCTTATTCG TERM 1657 1454033 - 1454052 + F 93 -9.3 -4.33214 | opp_overlap 1454033, overlap 1454030 1454028 AATAAAATAATAAAA GCCTCTG TATCAT CAGAGGC TTATTCTTTTCTTAT TERM 1658 1454052 - 1454033 - f 100 -9.3 -5.14949 | opp_overlap 1454030 1454028 1454033 AATAAAATAATAAAA GCCTCTG TATCAT CAGAGGC TTATTCTTTTCTTAT VF_1303 1454105 - 1454584 + | hypothetical protein TERM 1659 1454629 - 1454650 + G 72 -10.2 -2.5497 | opp_overlap 1454632, overlap 1454628 1454627 ATGTTACCACTGCAA TGAGCCTG TACCAT CAGGCTCA AATTTTCATGTTGAT VF_1304 1454603 - 1456981 + | copper-exporting ATPase ccoS 1456974 - 1457150 + | cytochrome oxidase maturation protein, cbb3-type VF_1307 1457140 - 1457814 + | integral membrane protein fnr 1457910 - 1458662 + | transcriptional regulatory protein Fnr, global regulator of anaerobic growth TERM 1660 1458716 - 1458689 - f 100 -11.4 -4.57073 | opp_overlap 1458689 TACTGCTTTTAAAAA GTGAGGTATATC TCTT GATGTACCTCAC TTTTTTGCATCTAAC TERM 1661 1458689 - 1458716 + F 100 -13.6 -5.1287 | opp_overlap 1458689 TACTGCTTTTAAAAA GTGAGGTATATC TCTT GATGTACCTCAC TTTTTTGCATCTAAC uspE 1458813 - 1459763 + | universal stress protein UspE TERM 1662 1459773 - 1459801 + F 72 -6 -4.3739 | opp_overlap 1459774, overlap 1459774 AGTTAAATGTCATTA AGGCCTAATTCT GAACA AGTATTAGGCCC TTTTCTCCCAAAATA TERM 1663 1459800 - 1459774 - f 77 -9.5 -3.2048 | opp_overlap 1459774 1459773 GTTAAATGTCATTAA GGCCTAATTCT GAACA AGTATTAGGCC CTTTTCTCCCAAAAT TERM 1664 1459774 - 1459800 + F 77 -9.5 -3.22113 | opp_overlap 1459774, overlap 1459773 GTTAAATGTCATTAA GGCCTAATTCT GAACA AGTATTAGGCC CTTTTCTCCCAAAAT ttcA 1459898 - 1460821 + | C32 tRNA thiolase TERM 1665 1460867 - 1460843 - T 100 -11.5 -5.37171 | opp_overlap 1460843 AATACCAAATAAAAA GGCGCAAAC GTTAACT GTTTGCGCC TTTTTTTATTTTGAT TERM 1666 1460843 - 1460867 + T 100 -12.2 -6.11229 | opp_overlap 1460843 AATACCAAATAAAAA GGCGCAAACG TTAAC TGTTTGCGCC TTTTTTTATTTTGAT VF_1312 1461540 - 1460893 - | hypothetical protein TERM 1667 1461070 - 1461054 - G 72 -4.4 -4.72986 | overlap 1461055 CAGCGTCACTAAAAA CGAAGG TGATG CCTTCA ACATCAGGCATGAAA bax 1462276 - 1461542 - | hypothetical protein TERM 1668 1462052 - 1462073 + g 72 -4.4 -4.7497 | TTCTAACTCTTTTGA CGACAAAG CAGTAT CGTTGTCG TTTTTGATAACTAAA VF_1314 1463100 - 1462285 - | hypothetical protein potA 1463414 - 1464532 + | putrescine/spermidine ABC transporter ATPase protein potB 1464516 - 1465373 + | spermidine/putrescine ABC transporter membrane protein TERM 1669 1465932 - 1465916 - g 77 -7.9 -4.25104 | opp_overlap 1465915 1465916 CTTCCTCTAGCAAAA CCAGCTG TGG CTGCTGG CTGGTTATTAAGTTT TERM 1670 1466070 - 1466083 + G 71 -5.3 -4.64952 | AAGTGAATGCCTTAG CAACA GTAA TGTTG TTTGTTTCTCTGATT potC 1465373 - 1466143 + | spermidine/putrescine ABC transporter membrane protein TERM 1671 1466208 - 1466237 + F 85 -6.5 -5.29782 | TAAACAATAAATCTG GAAGACATGCC TTTTGTTC GACATGTCTTC TTTTTTATCACTCTA potD2 1466268 - 1467302 + | polyamine transporter binding protein TERM 1672 1467348 - 1467328 - f 91 -12.6 -3.1886 | opp_overlap 1467328 ACTGAACCTTACTAA TGGCAGCG TATAT CGCTGCCA TTTTTGATCTCCCTC TERM 1673 1467328 - 1467348 + F 100 -12.6 -4.81551 | opp_overlap 1467328 ACTGAACCTTACTAA TGGCAGCG TATAT CGCTGCCA TTTTTGATCTCCCTC potD1 1467504 - 1468547 + | polyamine transporter binding protein TERM 1674 1468585 - 1468610 + T 100 -11.3 -6.28401 | opp_overlap 1468585 ACAACACATTTAAAA GCCAATGAATC TAAT GATTTATTGGC TTTTTTTATTTTTTA TERM 1675 1468610 - 1468585 - T 93 -9.1 -4.28977 | opp_overlap 1468585 ACAACACATTTAAAA GCCAATGAATC TAAT GATTTATTGGC TTTTTTTATTTTTTA cobB 1469343 - 1468630 - | NAD-dependent deacetylase TERM 1676 1469568 - 1469556 - g 74 -6.3 -4.4846 | TAACTCAACAACAAA GCTTT ACC AAAGC CGCACAGCTTCTTGA VF_1321 1469501 - 1470412 + | LysR family transcriptional regulator TERM 1677 1470498 - 1470511 + F 70 -3.8 -5.01497 | opp_overlap 1470498, overlap 1470492 AATATGTGATAAAAG CCTC AATTAA GAGG TTTTTGTCTACTAAT VF_1322 1470652 - 1471872 + | nucleoside permease NupC TERM 1678 1471919 - 1471894 - T 100 -10.5 -5.29716 | opp_overlap 1471894 GTAAGACAATAAAAA GCCACTTGTGA GTAA TCATAAGTGGC TTTTTTCGTTAATGA TERM 1679 1471894 - 1471919 + T 100 -12.7 -5.30155 | opp_overlap 1471894 GTAAGACAATAAAAA GCCACTTGTGA GTAA TCATAAGTGGC TTTTTTCGTTAATGA VF_1323 1472234 - 1471944 - | lipoprotein VF_1324 1472943 - 1472287 - | pentapeptide repeat-containing protein VF_1325 1473546 - 1473172 - | hypothetical protein VF_1326 1474270 - 1473671 - | acetyltransferase TERM 1680 1474029 - 1474000 - G 93 -10.9 -5.06414 | gap 1, opp_overlap 1474002 1474009 GTGCTCCAATAAAAA CAGGAGC-AAGATC TAA GATCTTAACTCCTG AATTTAAAAATCCAC VF_1327 1474729 - 1474304 - | transporter VF_1328 1475357 - 1474821 - | ferrichrome-binding protein VF_1329 1477304 - 1475382 - | soluble lytic murein transglycosylase VF_1330 1477585 - 1478916 + | carbohydrate binding domain-containing protein TERM 1681 1478929 - 1478952 + T 85 -10.4 -3.4489 | gap 1, opp_overlap 1478927 1478928 TAACAAATACCAACG CCCCCTTT-CT ATT AGTAAAGGGGG TTCATTATCAAGGTT VF_1331 1479511 - 1478966 - | hypothetical protein VF_1332 1480946 - 1479603 - | sodium-driven multidrug efflux pump VF_1333 1481053 - 1482009 + | LysR family transcriptional regulator VF_1334 1482124 - 1482921 + | oxalate/formate antiporter TERM 1682 1482936 - 1482952 + T 84 -6.5 -5.07486 | opp_overlap 1482936 1482937 AAGTGACAAGTTAAA GGGGG ATATTTA CCCCC TTTTTATTACAACTC yedJ 1483591 - 1482959 - | phosphohydrolase VF_1336 1484190 - 1483579 - | hypothetical protein TERM 1683 1484327 - 1484293 - R 100 -15.3 -5.20154 | opp_overlap 1484296 1484300 ATACAATCCAAAAAA TAAGTAATGGTGCCA GAATA TGACACCATTACTTA AATAAAACTCAGTGA TERM 1684 1484296 - 1484324 + r 80 -10.4 -3.06183 | opp_overlap 1484293, overlap 1484300 CAATCCAAAAAATAA GTAATGGTGCCA GAATA TGACACCATTAC TTAAATAAAACTCAG maa 1484938 - 1484393 - | maltose O-acetyltransferase rhtB 1485679 - 1485050 - | neutral amino-acid efflux system VF_1339 1485873 - 1486331 + | hypothetical protein TERM 1685 1486330 - 1486317 - T 74 -5.3 -4.65895 | TCTTTTATTGAAAAA TATCG TCAG CGATA AATTAGCTAAACGTA TERM 1686 1486350 - 1486371 + T 93 -11.7 -4.02051 | opp_overlap 1486346, overlap 1486363 AGCTAAACGTATTTA GGCTTTATC ACTC GATAAAGCC TTCTTTACCTTACTG VF_1340 1486650 - 1486381 - | hypothetical protein chbG 1486804 - 1487565 + | hypothetical protein VF_1342 1487887 - 1487573 - | phosphoribosylaminoimidazole carboxylase ATPase subunit VF_1343 1488354 - 1487887 - | hypothetical protein VF_1344 1488882 - 1488415 - | acetyltransferase TERM 1687 1488871 - 1488893 + g 91 -10 -4.63932 | overlap 1488870 TTCCTGATATGTTTT GATAACTATC ATT GATGGTTATC TTTTATTAAACCATA rimL 1489418 - 1488879 - | ribosomal-protein-L7/L12-serine acetyltransferase VF_1346 1489591 - 1489460 - | hypothetical protein phnA 1489958 - 1489623 - | alkylphosphonate utilization operon protein TERM 1688 1490080 - 1490060 - R 95 -9 -5.19879 | opp_overlap 1490060 CCGCAAATACAAAAA CGCCCCAT TCAAG ATGAGGCG TTAATATTTAAAACG VF_1348 1491131 - 1490100 - | putative cytoplasmic protein TERM 1689 1491296 - 1491261 - R 76 -7.7 -3.9222 | opp_overlap 1491260, overlap 1491259 1491262 AAAAATAAAACAATA GCTTACATCCTCG TGATTTGTGC CGAGGATGTAAGG GTATATAATTTCAAT TERM 1690 1491295 - 1491262 - R 83 -11.2 -2.91671 | opp_overlap 1491260, overlap 1491261 1491259 AAAATAAAACAATAG CTTACATCCTCG TGATTTGTGC CGAGGATGTAAG GGTATATAATTTCAA VF_1349 1493066 - 1491324 - | subtilisin-like serine protease TERM 1691 1495193 - 1495173 - g 75 -2.5 -5.252 | TATGGTCATAAAAAA GGTGATGAA GCA TTAATCGCC GTCGCTAAGGCATTA VF_1350 1493478 - 1495523 + | GGDEF domain-containing protein TERM 1692 1495530 - 1495564 + T 78 -10.3 -2.71101 | gap 1, opp_overlap 1495530 1495531 1495538, overlap 1495525 1495538 GATATTTAAATATAA TG-TTTAAAGCCTGTA ATTA TACAGGCTTTAAATCG TGCATTATTTAGCAG TERM 1693 1495563 - 1495530 - T 75 -8.3 -3.85256 | opp_overlap 1495525 1495530 1495538, overlap 1495531 1495538 GATATTTAAATATAA TGTTTAAAGCCTGTA ATTA TACAGGCTTTAAATC GTGCATTATTTAGCA TERM 1694 1495562 - 1495531 - T 84 -11.8 -2.90431 | opp_overlap 1495530 1495525 1495538, overlap 1495530 1495538 ATATTTAAATATAAT GTTTAAAGCCTGTA ATTA TACAGGCTTTAAAT CGTGCATTATTTAGC TERM 1695 1495555 - 1495538 - T 82 -9.9 -3.63707 | opp_overlap 1495538 1495530 1495525, overlap 1495531 1495530 AATATAATGTTTAAA GCCTGTA ATTA TACAGGC TTTAAATCGTGCATT TERM 1696 1495538 - 1495555 + T 82 -9.9 -3.69094 | opp_overlap 1495531 1495530 1495538, overlap 1495530 1495525 AATATAATGTTTAAA GCCTGTA ATTA TACAGGC TTTAAATCGTGCATT VF_1351 1496012 - 1495569 - | hypothetical protein TERM 1697 1496105 - 1496089 - R 72 -5.9 -4.36063 | ACAATATGACCAAAA CGTAAAA CAT TCTTACG TAACCTGTTGTAATG TERM 1698 1496283 - 1496260 - R 100 -11 -5.19879 | opp_overlap 1496260 1496259 1496281 1496282 TTTTAAATATAAAAA GCCGAACAAG TTAC CCTGCTCGGC ATTTTGAATGCATTT VF_1352 1496769 - 1496317 - | MutT/nudix family protein VF_2610 1496940 - 1496806 - | hypothetical protein TERM 1699 1497145 - 1497114 - R 83 -8 -4.32649 | opp_overlap 1497113 1497112 1497110 1497109, overlap 1497109 1497115 ACGTTAAAAACTAAA TGCAACGCATAGTA AAAA TGCCATGCGTTGCG AATTACTTTTAAACA TERM 1700 1497144 - 1497115 - R 87 -11.5 -3.18505 | opp_overlap 1497113 1497112 1497110 1497109, overlap 1497114 1497109 CGTTAAAAACTAAAT GCAACGCATAGTA AAAA TGCCATGCGTTGC GAATTACTTTTAAAC VF_1353 1497480 - 1497166 - | virulence gene repressor RsaL TERM 1701 1497710 - 1497679 - R 90 -11.6 -3.84246 | overlap 1497674 TCCTTAAGCACTAAA CGCAACGCATAGTA AAAA TTCCACGCGTTGCG AATCACTCTTAAACA VF_1354 1499125 - 1497737 - | DNA-binding protein TERM 1702 1497820 - 1497830 + g 75 -5.4 -4.69326 | opp_overlap 1497820 TTAATTTAGAAAATT GGTA CGT TACC TTTTCTGTTCGGTCT TERM 1703 1498740 - 1498761 + g 72 -10.3 -2.66695 | overlap 1498739 1498737 GACTGTGCCCCTTGT CGAAGAAAA ATTT TTTTCTTCG CTGTTTCATGAACAG VF_1355 1500426 - 1499161 - | hypothetical protein VF_2611 1500744 - 1500595 - | hypothetical protein VF_1356 1501290 - 1500781 - | hypothetical protein TERM 1704 1500995 - 1501017 + g 83 -10.8 -3.71981 | overlap 1500993 1501002 GACCAATCTTGTGAC TTGAAAAGAA ATG TTCTTTTCAA TATTTCTTCAGTGTT TERM 1705 1501625 - 1501639 + r 87 -10 -4.06786 | CTGCTTTCATACTTT GCGACA ACC TGTCGC TTTGTGCTGTTAGCT TERM 1706 1501816 - 1501839 + r 74 -6.6 -4.39571 | opp_overlap 1501817, overlap 1501817 ATCAGACACAAAAAA ACCGAGCAAG TTAC CCTGCTCGGC TTTTGAATTTATGAC TERM 1707 1501817 - 1501838 + r 79 -10.1 -3.23019 | opp_overlap 1501817, overlap 1501816 TCAGACACAAAAAAA CCGAGCAAG TTAC CCTGCTCGG CTTTTGAATTTATGA TERM 1708 1501838 - 1501817 - R 100 -12.3 -5.76633 | opp_overlap 1501817 1501816 TCAGACACAAAAAAA CCGAGCAAG TTAC CCTGCTCGG CTTTTGAATTTATGA fdnI 1502897 - 1501875 - | formate dehydrogenase N, gamma subunit TERM 1709 1502275 - 1502294 + g 70 -5.8 -4.39002 | ATGAACCATTGAATG TCTGTCTT GTTG AAGATAGA TTTTCTCCACCATTT TERM 1710 1502798 - 1502836 + g 83 -11.8 -3.22223 | opp_overlap 1502834 1502835 CGCTCTTCGCGGCTG CACTCTCATTTGCCATGC TTG GCATAGCAAATGAAAGCG TTAATGCTGCCATTA TERM 1711 1502867 - 1502834 - G 86 -10.3 -4.12738 | opp_overlap 1502798, overlap 1502835 GCATAGCAAATGAAA GCGTTAATGCTGCCA TTAG CGGCAGCAATAACGA AAGAGAAAGACGTTT TERM 1712 1502866 - 1502835 - G 93 -13.8 -3.0692 | opp_overlap 1502798, overlap 1502834 CATAGCAAATGAAAG CGTTAATGCTGCCA TTAG CGGCAGCAATAACG AAAGAGAAAGACGTT fdnH 1503522 - 1502914 - | formate dehydrogenase N, beta subunit TERM 1713 1503087 - 1503102 + g 71 -7.6 -3.95051 | overlap 1503078 ATTTACCTTCAGCGA TACGGT TTGC ACCGTA TTTCTCACGTTCTTC fdnG 1506391 - 1503536 - | formate dehydrogenase N, alpha subunit TERM 1714 1505925 - 1505941 + g 77 -9.5 -3.59262 | opp_overlap 1505915 1505924 1505923 1505928, overlap 1505928 CCTAACCAGTAAACT GAATCAG GAC CTGATTC TTTACGGATCTCAAG VF_1361 1506601 - 1506404 - | Tat pathway signal sequence domain-containing protein VF_1362 1507288 - 1506686 - | TorD family cytoplasmic chaperone VF_1363 1508993 - 1507293 - | formate hydrogenlyase subunit 6 TERM 1715 1509130 - 1509168 + r 93 -9.6 -4.17416 | overlap 1509131 GGGAGTTATTTTTAT ACGGGACATTTTGTCTCA ACT TGGTTCAAAATGTCCCGA TTCTTTATATGGTCT TERM 1716 1509131 - 1509167 + r 88 -13.1 -3.09365 | overlap 1509130 GGAGTTATTTTTATA CGGGACATTTTGTCTCA ACT TGGTTCAAAATGTCCCG ATTCTTTATATGGTC VF_1364 1509691 - 1509173 - | hypothetical protein VF_1365 1510130 - 1509672 - | hypothetical protein fdhD 1510278 - 1511099 + | FdhD protein (FdsC) TERM 1717 1511171 - 1511131 - T 100 -10.4 -4.2558 | opp_overlap 1511134, overlap 1511138 TAGGTGCTAGGAAAA GCAGGAACGAGTGAGAGC GAAAA GCAGTTACTCGTCCCTGC TCTCACTCGCCACTA TERM 1718 1511180 - 1511138 - T 79 -9.3 -3.38604 | opp_overlap 1511134, overlap 1511131 TAGGAAAAGCAGGAA CGAGTGAGAGC-GAAAAGCAG TTA CT-CGTCCCTGCTCTCACTCG CCACTAGTCCCTCAA VF_1367 1513337 - 1511244 - | two-component response regulator VF_1368 1514640 - 1513477 - | membrane-bound lytic murein transglycosylase C precursor TERM 1719 1513833 - 1513844 + g 81 -7.2 -4.63184 | opp_overlap 1513833 1513832 CTAATTTAAAAACAT CCGC TCCT GCGG TTTTTGGGATCACTT TERM 1720 1514051 - 1514063 + g 77 -6.3 -4.62475 | ACATAATACGCTTTA CCATT TTT AATGG TTTTAGTTTGTAGCT TERM 1721 1514833 - 1514866 + r 73 -7.7 -3.72775 | gap 1, opp_overlap 1514842, overlap 1514842 TCACACTTTTTTGAC GTAAAAAAACCGTC ACTATTG GACGGTTT-TTTAC TGTTTATTAATAAGT TERM 1722 1514842 - 1514858 + r 80 -5.1 -5.34055 | opp_overlap 1514842, overlap 1514833 TTTGACGTAAAAAAA CCGTC ACTATTG GACGG TTTTTTACTGTTTAT TERM 1723 1514858 - 1514842 - R 83 -5.1 -5.47218 | opp_overlap 1514842 1514833 TTTGACGTAAAAAAA CCGTC ACTATTG GACGG TTTTTTACTGTTTAT VF_1369 1516914 - 1514881 - | methyl-accepting chemotaxis protein TERM 1724 1516731 - 1516754 + g 82 -6 -4.88228 | opp_overlap 1516736, overlap 1516736 TTAATACAATAAGCG CAAGACTCGT CAAC ACGAGTTTAG TTTTTAATGTTAGAT TERM 1725 1516736 - 1516749 + g 76 -6.7 -4.3623 | opp_overlap 1516736, overlap 1516731 ACAATAAGCGCAAGA CTCGT CAAC ACGAG TTTAGTTTTTAATGT TERM 1726 1517017 - 1516990 - R 100 -10.8 -5.64274 | opp_overlap 1516990 1516989 TCAGGCATAAAAAAA CCTAAGAACAAT TAAC ATTATTCTTAGG CTTTAAAAAGTGAGG VF_1370 1517680 - 1517042 - | pyrrolidone-carboxylate peptidase VF_1371 1518597 - 1517692 - | permease VF_1372 1519284 - 1518607 - | permease TERM 1727 1519017 - 1519037 + g 71 -6.9 -4.12037 | opp_overlap 1518989, overlap 1518989 1519018 GACCTGCTGATGCTT GCTTGATTG AAC CAATCAAGG TTTCTGCTCTTTCTC TERM 1728 1519018 - 1519036 + g 75 -10.4 -3.06138 | overlap 1519017 ACCTGCTGATGCTTG CTTGATTG AAC CAATCAAG GTTTCTGCTCTTTCT TERM 1729 1519361 - 1519390 + r 72 -9.3 -2.7395 | opp_overlap 1519362 1519370, overlap 1519360 GGGTAAAACCAAACA ACCCCAAAACGTT ATAG AACGTTTCGGGGC ATTTAACGAGTATAT TERM 1730 1519389 - 1519362 - R 100 -15 -4.21465 | opp_overlap 1519361 1519360, overlap 1519370 GGTAAAACCAAACAA CCCCAAAACGTT ATAG AACGTTTCGGGG CATTTAACGAGTATA VF_1373 1520732 - 1519488 - | transporter ybgK 1521770 - 1520814 - | allophanate hydrolase subunit 2 TERM 1731 1520864 - 1520876 + g 80 -7.7 -4.47707 | TATGTAACTCAGCTT CTGCA CTA TGCAG TTCTTTTTCGTAGAA TERM 1732 1521189 - 1521175 - G 70 -3.6 -5.00616 | TCTTCTGGTAAAAAA TCATCA TAT TGATAA CTCGGGATCACCCCT ybgJ 1522482 - 1521754 - | allophanate hydrolase subunit 1 ybgL 1523225 - 1522482 - | hypothetical protein VF_1377 1524074 - 1523274 - | hypothetical protein TERM 1733 1525015 - 1524984 - g 100 -13.2 -4.08279 | gap 1, opp_overlap 1524984 ATACGCTAGAAATAA TTGAAGCAGAC-TGG TCA CCAAGTCCGCTTCAA TTTTCTGTTGCTTAT TERM 1734 1524984 - 1525015 + G 93 -11 -4.74767 | gap 1, opp_overlap 1524984 ATACGCTAGAAATAA TTGAAGCAGAC-TGG TCA CCAAGTCCGCTTCAA TTTTCTGTTGCTTAT VF_1378 1524221 - 1525114 + | LysR family transcriptional regulator VF_1379 1527999 - 1525111 - | hypothetical protein TERM 1735 1526562 - 1526580 + g 74 -6 -4.46514 | overlap 1526564 CTAAGTAATCTAGGC GATCAAAC ATA GTTTGAAC TTTATTTGCATCCAT VF_1380 1529140 - 1527983 - | penicillin-binding protein TERM 1736 1528430 - 1528410 - G 72 -8.4 -3.524 | opp_overlap 1528413, overlap 1528413 TATTTATCGACATAA TAACTGGA CGCTT TCCAGTTA ATCAGAAAATTGTCT TERM 1737 1528458 - 1528470 + g 77 -6.3 -4.57569 | TCTTTCGTTGATGCT TGAGT GTT ACTCA TTTTTAAAGGAATGA VF_1381 1529631 - 1529281 - | hypothetical protein VF_1382 1530224 - 1529694 - | ribosomal-protein-alanine acetyltransferase TERM 1738 1530339 - 1530319 - R 100 -11.2 -6.06529 | opp_overlap 1530316 TATAGACAAAAAAAA GCCACGAT ATGTG ATCGTGGC TGACTATTTAAATCA VF_1383 1532612 - 1530369 - | U32 family peptidase TERM 1739 1532923 - 1532907 - g 74 -5.2 -4.68846 | ATGAATAAACCAAAA GAAATG TTATC CATTTC CCCTAAAGGCACGGT VF_1384 1532784 - 1533428 + | putative glutathione S-transferase VF_1385 1533898 - 1533425 - | histone acetyltransferase HPA2 VF_1386 1534434 - 1533988 - | acetyltransferase VF_2612 1534516 - 1534424 - | hypothetical protein VF_2613 1534641 - 1534516 - | hypothetical protein TERM 1740 1534580 - 1534562 - G 74 -3.8 -5.14894 | AAAAAAGCATAAAAA GAGACACC AAC GTTATCTC CCTTTTGTTCTATTT sseA 1535521 - 1534676 - | 3-mercaptopyruvate sulfurtransferase TERM 1741 1535100 - 1535137 + g 71 -6.4 -4.25104 | AAAGAAGGTATTTGT TGGTAAGAAGTAACGA CTTCCC TCTTTTCTTCTTGCCA TTTTGGTAAGCCGCC yeeZ 1536327 - 1535545 - | epimerase TERM 1742 1535661 - 1535678 + g 70 -9.9 -2.57757 | opp_overlap 1535660 1535659, overlap 1535659 1535670 TGGATTCGATAAACG TTGGCGT TTCA ACGCCAA TACGTTGCGTTGCTT VF_1389 1536790 - 1536347 - | ribosomal-protein-alanine acetyltransferase VF_1390 1536976 - 1538667 + | carbohydrate binding domain-containing protein TERM 1743 1538686 - 1538705 + T 100 -10.7 -4.09628 | opp_overlap 1538686 TATCAAATAAAAAAA TGGGCCG TTTCGT CGGCCCA TTCTTATTTAAAATA TERM 1744 1538705 - 1538686 - T 100 -10.7 -5.99154 | opp_overlap 1538686 TATCAAATAAAAAAA TGGGCCG TTTCGT CGGCCCA TTCTTATTTAAAATA VF_1391 1539564 - 1538713 - | putative lipoprotein TERM 1745 1539707 - 1539734 + r 100 -11.4 -4.53602 | opp_overlap 1539707 TAAAAACAAAGAAAA GCCCTTTAACTC TATA GAATTAAAGGGC TTTATTTACTATGCC TERM 1746 1539734 - 1539707 - R 100 -13.6 -5.3167 | opp_overlap 1539707 TAAAAACAAAGAAAA GCCCTTTAACTC TATA GAATTAAAGGGC TTTATTTACTATGCC VF_1392 1540231 - 1539743 - | hypothetical protein VF_2614 1540772 - 1540377 - | hypothetical protein VF_1393 1541331 - 1540873 - | hypothetical protein TERM 1747 1541372 - 1541398 + r 100 -15.2 -2.92192 | opp_overlap 1541372, overlap 1541367 ATCCATAATAAAAAA GGCTTACCGCAG TTT CTGCGATAAGCC TCTCATTCAATCAAA TERM 1748 1541398 - 1541372 - R 100 -17.4 -5.56673 | opp_overlap 1541367 1541372 ATCCATAATAAAAAA GGCTTACCGCAG TTT CTGCGATAAGCC TCTCATTCAATCAAA VF_1394 1542996 - 1541440 - | glycine betaine transporter TERM 1749 1541921 - 1541911 - G 70 -5.4 -4.35742 | ACCCAATGATGAAAA CCAA AAG TTGG TCGCAATTGGAGCAA TERM 1750 1542588 - 1542574 - G 72 -4.3 -4.74103 | overlap 1542587 TCCCCAATGTAAAAA GCTTT GGCTT AAAGC TGGAGCAACTGCTGC VF_1395 1543338 - 1543724 + | hypothetical protein VF_1396 1543763 - 1544419 + | DNA-binding response regulator TERM 1751 1544756 - 1544741 - g 75 -2.6 -5.2189 | gap 1, opp_overlap 1544744, overlap 1544744 GCAAGTACCAAAAAA GATGAAC TGC GTTC-TC GTTCTTTATGGGATA TERM 1752 1545389 - 1545402 + G 73 -6.7 -4.27617 | overlap 1545384 1545400 TCCGATCGTGTTGAT GCCAT ATCA ATGGC TTTTGATAAAGTCTA VF_1397 1544438 - 1545802 + | sensor histidine kinase TERM 1753 1545854 - 1545813 - T 100 -10.3 -4.34486 | overlap 1545810 1545814 ATTAACAATAAATAA CCTCGTACGTTATCCATTA TTAC CAATAGGTAACGTACGAGT ACTGATAACCAATAT TERM 1754 1545853 - 1545814 - T 93 -13.8 -3.19065 | overlap 1545813 1545810 TTAACAATAAATAAC CTCGTACGTTATCCATTA TTAC CAATAGGTAACGTACGAG TACTGATAACCAATA VF_1398 1547099 - 1545822 - | hypothetical protein TERM 1755 1546259 - 1546273 + g 70 -2.9 -5.10933 | opp_overlap 1546259 CGACTAAATTAATAT CATTT CTTGA AAATG TTTTGTTTTCAATCC TERM 1756 1546816 - 1546805 - G 72 -4.4 -4.73105 | opp_overlap 1546805 AGCGAGAAAAAACAA GAAC GATA GTTC CTCTCTTTTGCAATA TERM 1757 1547034 - 1547020 - G 78 -4.2 -5.26875 | overlap 1547021 GCTGCAATTAAAAAA GGTTCC CCA GGAACA AATACATTAGGTCCT TERM 1758 1547033 - 1547021 - G 70 -7.7 -3.75402 | overlap 1547020 CTGCAATTAAAAAAG GTTCC CCA GGAAC AAATACATTAGGTCC VF_1399 1547851 - 1547120 - | glycosyltransferase involved in cell wall biogenesis VF_2615 1548082 - 1548264 + | hypothetical protein VF_1400 1550551 - 1548509 - | sensor histidine kinase TERM 1759 1549473 - 1549488 + g 70 -2.6 -5.10497 | opp_overlap 1549472 CCTAATTGGACAGAC TTTACT ACAA AGTGAA TTTTTTCGATCGGTT VF_1401 1551975 - 1550548 - | sigma-54 dependent response regulator TERM 1760 1550752 - 1550764 + g 87 -6.3 -5.29716 | GCCTTCTTTATTCCT TGATG CGT CATCA TTTTTATTCTGTTCA modA2 1552257 - 1553078 + | molybdate ABC transporter, periplasmic binding protein ModA modB2 1553082 - 1553780 + | molybdate ABC transporter, permease ModB modC2 1553794 - 1554501 + | molybdate ABC transporter, ATP-binding component ModC mobA 1554479 - 1555063 + | molybdopterin-guanine dinucleotide biosynthesis protein A mobB 1555060 - 1556841 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 1761 1556892 - 1556868 - f 93 -11.5 -4.04209 | opp_overlap 1556868 CCAAATGATTATAAA CAGGCCTATTT TAC AACTAGGCCTG TTTTCTTTTCTAATC TERM 1762 1556868 - 1556892 + F 100 -11.5 -5.20781 | opp_overlap 1556868 CCAAATGATTATAAA CAGGCCTATTT TAC AACTAGGCCTG TTTTCTTTTCTAATC VF_1407 1556979 - 1557311 + | preprotein translocase subunit-like protein TERM 1763 1557406 - 1557363 - T 95 -8.5 -5.31275 | opp_overlap 1557363 GCGCATTACAAAAAA GAGCCTC-TGTTTATCTGTTA CTAA TAACAAACAA-CATGAGGCTC TTTTTGTATCTAAAT TERM 1764 1557363 - 1557406 + T 76 -4.1 -5.04597 | opp_overlap 1557363 GCGCATTACAAAAAA GAGCCTC-TGTTTATCTGTTA CTAA TAACAAACAA-CATGAGGCTC TTTTTGTATCTAAAT nagK 1558355 - 1557444 - | N-acetyl-D-glucosamine kinase TERM 1765 1558436 - 1558449 + r 80 -6.7 -4.82154 | CAGACTGTGACCTAT CCGAT ATTC ATCGG TTTTTAGTGTGAATT yfiP 1559224 - 1558481 - | hypothetical protein TERM 1766 1559946 - 1559969 + G 70 -2.6 -5.14985 | gap 1, overlap 1559952 TCTGTTCACATCTCT GAAATGCATAA TAA TTATG-GTTTC TTTTTATCTATTTGG VF_2616 1559316 - 1560119 + | sterol desaturate TERM 1767 1560157 - 1560117 - T 100 -13 -4.55295 | gap 1, opp_overlap 1560129, overlap 1560129 CCCTTTAGAAAGAAA TAAACAAAAAAAGGCGATC CGAA GATCGCCTTTTTT-ATTTA TAGATTATGTATTTC TERM 1768 1560129 - 1560146 + T 100 -11.3 -5.72622 | opp_overlap 1560117 1560129 AAATAAACAAAAAAA GGCGATC CGAA GATCGCC TTTTTTATTTATAGA TERM 1769 1560146 - 1560129 - T 100 -11.3 -6.11392 | opp_overlap 1560129, overlap 1560117 AAATAAACAAAAAAA GGCGATC CGAA GATCGCC TTTTTTATTTATAGA abgT 1561785 - 1560193 - | aminobenzoyl-glutamate transporter TERM 1770 1561367 - 1561353 - G 71 -5 -4.49314 | overlap 1561354 TACCAGCAAAAACAA CGGTTA CAG TAACCA TACGCTTAGACGCAC nlpC 1562083 - 1562622 + | lipoprotein NlpC TERM 1771 1562660 - 1562631 - T 100 -13.1 -5.72622 | opp_overlap 1562636 GTTATAAACAAAAAA GCTAAGTGAAATA CCCC TACTTCACTTAGC TTCACGATCTTTCGT VF_1412 1563026 - 1562691 - | Type IIA topoisomerase, B subunit TERM 1772 1563930 - 1563901 - g 72 -10.1 -2.53911 | overlap 1563905 TTAAGTGTTAAGGGA CCAATAAGTTACG ATCC CGCATCTTATTGG GGAGATGCTGAATGT yniA 1563283 - 1564149 + | phosphotransferase/kinase TERM 1773 1564177 - 1564198 + F 100 -9.5 -5.69793 | opp_overlap 1564177 ACCTAGCAAATACAA TGAGATGGT ACTT GCCATCTCA TTTTTTGTTTAATGT TERM 1774 1564198 - 1564177 - f 79 -8.8 -3.86653 | opp_overlap 1564177 ACCTAGCAAATACAA TGAGATGG TACTTG CCATCTCA TTTTTTGTTTAATGT VF_2617 1564385 - 1564588 + | hypothetical protein ribC 1565203 - 1564595 - | riboflavin synthase subunit alpha TERM 1775 1564720 - 1564741 + g 72 -4.5 -4.72986 | opp_overlap 1564728 GCTCTAGAGTTTCAG GGATTAAAT TTAC ATTAAATCC TTTTTCATCGACATC TERM 1776 1565862 - 1565878 + G 80 -4.3 -5.29445 | overlap 1565867 ATTTACATGCTGTAT TGTGGGC TGC GCCAGCA TTTTTATTATTCCAA mdtK 1565462 - 1566844 + | multidrug efflux protein TERM 1777 1566870 - 1566894 + T 100 -10.1 -5.86061 | opp_overlap 1566870, overlap 1566872 TAAAATAATAAAAAA GCCGAACATAT TAG ATATGTTCGAC TTTTTTTTAATCAAA TERM 1778 1566894 - 1566870 - T 100 -12.3 -5.77677 | opp_overlap 1566870 1566872 TAAAATAATAAAAAA GCCGAACATAT TAG ATATGTTCGAC TTTTTTTTAATCAAA TERM 1779 1566872 - 1566892 + T 84 -11.3 -3.05247 | opp_overlap 1566870, overlap 1566870 AAATAATAAAAAAGC CGAACATAT TAG ATATGTTCG ACTTTTTTTTAATCA VF_1416 1567932 - 1566928 - | TPR repeat-containing protein TERM 1780 1567503 - 1567521 + g 79 -8.9 -3.81 | opp_overlap 1567503 1567505 CTAACTCTTTATATA CAGGTTC CATTT GAACCTG TTGTTCTGCCGTCAT VF_1417 1569302 - 1567986 - | arylsulfatase regulator (Fe-S oxidoreductase) TERM 1781 1569003 - 1569019 + g 76 -2.3 -5.44721 | TTCAGGCTGATATTT TTTTTGA AAT TCAACAA TTTTTTTAAAGTAAT VF_1418 1569504 - 1570298 + | hypothetical protein TERM 1782 1570366 - 1570345 - T 100 -12.3 -5.38054 | opp_overlap 1570345 CTTCACAAATAAAAA CAGCGCCGA AAAT TCAGCGCTG TTTGTTTAAAAGACA TERM 1783 1570345 - 1570366 + T 100 -10.1 -4.41348 | opp_overlap 1570345 CTTCACAAATAAAAA CAGCGCCGA AAAT TCAGCGCTG TTTGTTTAAAAGACA VF_1419 1571286 - 1570372 - | LysR family transcriptional regulator TERM 1784 1571205 - 1571215 + g 72 -3.2 -5.1244 | overlap 1571210 TCATTCTTATTGCCG CCTT TGA GAGG TTTTTCTCTTCATAG VF_1420 1572675 - 1571365 - | hypothetical protein VF_1421 1574372 - 1572675 - | transporter VF_1422 1575435 - 1574365 - | von Willebrand factor type A domain-containing protein TERM 1785 1574967 - 1574956 - G 71 -7.2 -3.85698 | TGGCGTTTGTACAAA GGCG GCAT CGCC AAATAAAATAAGTCC VF_1423 1575964 - 1575425 - | hypothetical protein VF_1424 1576899 - 1575961 - | MoxR protein TERM 1786 1576056 - 1576068 + g 70 -2.7 -5.09895 | TTGCTGCCATTAATT GAATA AGT TGTTC TTTTTTCAATGACTG VF_1425 1577921 - 1576908 - | MoxR protein VF_1426 1580278 - 1578002 - | TPR repeat-containing protein TERM 1787 1580449 - 1580432 - R 88 -6.9 -4.96848 | opp_overlap 1580432 1580433, overlap 1580433 GCTTTTATATAAAAA GGGGCTC CGAA GAGCCCT CTTAATTAGAACTGT TERM 1788 1580448 - 1580433 - R 86 -10.4 -3.57627 | opp_overlap 1580432 1580433, overlap 1580432 CTTTTATATAAAAAG GGGCTC CGAA GAGCCC TCTTAATTAGAACTG TERM 1789 1580433 - 1580448 + r 83 -10.4 -3.24329 | opp_overlap 1580433 1580432, overlap 1580432 CTTTTATATAAAAAG GGGCTC CGAA GAGCCC TCTTAATTAGAACTG aslA 1582026 - 1580479 - | acrylsulfatase-like enzyme VF_1428 1582251 - 1583801 + | sulfatase family protein TERM 1790 1583815 - 1583834 + F 100 -10 -4.53036 | opp_overlap 1583814 AACATGAATAAGATT TAGGGCTC ATAT GGGCCCTA TTTTGCTATTTATAA VF_1429 1583870 - 1584775 + | hypothetical protein VF_1430 1584956 - 1586527 + | sulfatase family protein TERM 1791 1586578 - 1586541 - T 100 -21.5 -3.16872 | opp_overlap 1586546, overlap 1586546 AGTAATATCTAAAAC TAAAACGCCCCGAGTGA ATAT TCACTCGGGGCGTTTTT TTATCTGGAATCTAG TERM 1792 1586573 - 1586546 - T 100 -21.4 -4.68645 | opp_overlap 1586546, overlap 1586541 TATCTAAAACTAAAA CGCCCCGAGTGA ATAT TCACTCGGGGCG TTTTTTTATCTGGAA TERM 1793 1586546 - 1586573 + T 100 -21.4 -5.71712 | opp_overlap 1586546 1586541 TATCTAAAACTAAAA CGCCCCGAGTGA ATAT TCACTCGGGGCG TTTTTTTATCTGGAA VF_2618 1586865 - 1586590 - | hypothetical protein VF_1431 1587217 - 1586873 - | hypothetical protein TERM 1794 1587350 - 1587404 + H 71 -8.6 -3.03701 | opp_overlap 1587379 TTTTTAATCTTCGCT GTCAAGTTCATGGCATATGCCAAAAA TAA TTATTGGCATATGCCAGTAACAAGCC TATACTTTCATCAAA VF_1432 1587437 - 1587721 + | DNA-binding protein VF_1433 1587721 - 1588161 + | hypothetical protein VF_1434 1588158 - 1588355 + | putative periplasmic protein TERM 1795 1588382 - 1588359 - T 100 -10.4 -5.38958 | opp_overlap 1588359 ACGGACAAATAAAAA GTGAAACCAG TTAT CTAGTTTCAC TTTGCAATTTTGGTA TERM 1796 1588359 - 1588382 + T 75 -8.2 -3.77484 | opp_overlap 1588359 ACGGACAAATAAAAA GTGAAACCAG TTAT CTAGTTTCAC TTTGCAATTTTGGTA VF_1435 1588910 - 1588566 - | hypothetical protein yccF 1589472 - 1589020 - | hypothetical protein VF_2619 1589689 - 1589528 - | hypothetical protein VF_1437 1589854 - 1590459 + | hypothetical protein TERM 1797 1590517 - 1590493 - T 88 -7.1 -4.87626 | opp_overlap 1590493 TCTTAATAGCAAAAA TGGAGGTCTAC ATA GTATTCCTCCA TTATCAAATAGCGTT VF_1438 1590989 - 1590537 - | hypothetical protein TERM 1798 1591057 - 1591031 - R 100 -10.2 -5.45802 | opp_overlap 1591031 TGGCTAAAACAAAAA CACTCGACAAAT TTT AACTGTCGAGTG TTTTTTAGATTATTC TERM 1799 1591031 - 1591057 + r 90 -8.1 -5.2166 | opp_overlap 1591031 TGGCTAAAACAAAAA CACTCGACA AATTTTAAC TGTCGAGTG TTTTTTAGATTATTC VF_1439 1592354 - 1591089 - | DEAD-box ATP dependent DNA helicase TERM 1800 1591752 - 1591771 + g 77 -5 -5.00388 | AACTTCTTCTGGAAA CGTTGCTG AAAA CAGTAATG TTTGTTTTTGCTTTG VF_1440 1592913 - 1592494 - | hypothetical protein VF_1441 1593524 - 1592946 - | putative lipoprotein TERM 1801 1594040 - 1594030 - g 72 -3.2 -5.03145 | GAAGTCGTTAAAAAA GCTC AAC AAGC ATGCTACGACGCAGG VF_1442 1593832 - 1594167 + | hypothetical protein TERM 1802 1594208 - 1594174 - T 87 -10.8 -3.36273 | opp_overlap 1594169, overlap 1594176 TTTGTTTAACATGAA TATCTAGCCGTCAGTA AAA TGCTGACGGCTAAAAA TGAACTAATTATTGT TERM 1803 1594206 - 1594176 - T 93 -13.4 -3.25073 | opp_overlap 1594169, overlap 1594174 TGTTTAACATGAATA TCTAGCCGTCAGTA AAA TGCTGACGGCTAAA AATGAACTAATTATT VF_1443 1594528 - 1594247 - | transcriptional regulatory protein TERM 1804 1594792 - 1594754 - H 80 -9.1 -3.53343 | gap 1, opp_overlap 1594767, overlap 1594755 1594758 1594767 AATTCTTGCTCTAAA TTCACCATCGAAACGTTT ACGC AAACGTTTCGATGA-GCA CAAAACAGACAATAA TERM 1805 1594792 - 1594755 - H 72 -9.3 -2.71791 | opp_overlap 1594767, overlap 1594754 1594758 1594767 ATTCTTGCTCTAAAT TCACCATCGAAACGTTT ACGC AAACGTTTCGATGAGCA CAAAACAGACAATAA TERM 1806 1594789 - 1594758 - H 100 -15.4 -2.64155 | opp_overlap 1594767, overlap 1594754 1594755 1594767 CTTGCTCTAAATTCA CCATCGAAACGTTT ACGC AAACGTTTCGATGA GCACAAAACAGACAA rbsD 1594841 - 1595260 + | D-ribose pyranase TERM 1807 1595607 - 1595595 - g 72 -3.4 -5.0133 | TAGGCCGTGAAAAAA CCAA TGCGT TTGG CGGGATCAAATGGTC rbsA 1595273 - 1596787 + | D-ribose transporter ATP binding protein rbsC 1596784 - 1597770 + | ribose ABC transporter permease protein rbsB 1597902 - 1598780 + | D-ribose transporter subunit RbsB rbsK 1598972 - 1599889 + | ribokinase TERM 1808 1599936 - 1599898 - f 76 -7.6 -4.00868 | GCATTGATAATTAAA TATCGTTGCCTGTATT TGTATTT AATGTAGGCAACGATA TAAACAAGGATTGAA rbsR 1599955 - 1600962 + | transcriptional repressor RbsR TERM 1809 1601045 - 1600996 - T 93 -10.9 -3.95727 | opp_overlap 1600998, overlap 1600998 AATAAAGCAGAACAA TAGAGCCTCTCATCATATTCCTT TCTA ATGGAAGATAATAAGAGGCTCTT TCTATTCTAATAATT TERM 1810 1600998 - 1601043 + T 93 -9.1 -4.29304 | opp_overlap 1600998 1600996 TAAAGCAGAACAATA GAGCCTCTCATCATATTCCTT TCTA ATGGAAGATAATAAGAGGCTC TTTCTATTCTAATAA TERM 1811 1601043 - 1600998 - T 100 -13.5 -3.54602 | opp_overlap 1600998, overlap 1600996 TAAAGCAGAACAATA GAGCCTCTCATCATATTCCTT TCTA ATGGAAGATAATAAGAGGCTC TTTCTATTCTAATAA VF_1450 1601909 - 1601052 - | DNA ligase TERM 1812 1602172 - 1602204 + H 77 -9.5 -3.2794 | opp_overlap 1602169 ATCAATATGAGATGT TTATTTATAGATAAT TCT AATATCTATAAATAA TTCATATAACTCAAC VF_1451 1602221 - 1604890 + | nuclease TERM 1813 1604914 - 1604943 + T 100 -10.8 -5.07652 | opp_overlap 1604917, overlap 1604917 AAGAGCATTAAATAA AAATGGCGGAGT ATCTAC ACTCCGCCATTC TTTTATTTTGAAGCC TERM 1814 1604917 - 1604940 + T 100 -12.5 -4.6313 | opp_overlap 1604917, overlap 1604914 AGCATTAAATAAAAA TGGCGGAGT ATCTAC ACTCCGCCA TTCTTTTATTTTGAA TERM 1815 1604940 - 1604917 - T 100 -13.2 -5.34309 | opp_overlap 1604917 1604914 AGCATTAAATAAAAA TGGCGGAGTA TCTA CACTCCGCCA TTCTTTTATTTTGAA VF_1452 1606415 - 1604946 - | sodium-driven multidrug efflux pump TERM 1816 1605574 - 1605560 - G 77 -6.4 -4.48792 | ACAACGCAAAAATAA CCGCAA ACG TTACGG GAATTAATCGTCCAA TERM 1817 1606546 - 1606514 - R 80 -7.2 -4.58395 | opp_overlap 1606522, overlap 1606522 GTTATTTCCTAAAAA TAAAAAAACCACAA ACTAA TTGTGGTTTTCTTC AAACAGTGGAAGTAA TERM 1818 1606522 - 1606538 + r 76 -6.6 -4.63486 | opp_overlap 1606514 1606522 CTAAAAATAAAAAAA CCACAA ACTAA TTGTGG TTTTCTTCAAACAGT TERM 1819 1606538 - 1606522 - R 100 -6.6 -6.20267 | opp_overlap 1606522, overlap 1606514 CTAAAAATAAAAAAA CCACAA ACTAA TTGTGG TTTTCTTCAAACAGT VF_1453 1607314 - 1606568 - | hypothetical protein TERM 1820 1607344 - 1607368 + r 75 -7.2 -4.16842 | CAAATAGATTTTATT GAGTATAGTG TTATT CCCTATACTC TTTGTTAAAAATAAG VF_2620 1607547 - 1607389 - | hypothetical protein VF_1454 1608051 - 1609433 + | sodium-linked D-alanine glycine permease VF_2621 1609758 - 1609654 - | hypothetical protein TERM 1821 1609682 - 1609698 + g 85 -5.8 -5.2197 | opp_overlap 1609682 AGACCCAATTTAAAA GCAGCT TTCTC GGCTGC TTTTTCATTTTTGTG TERM 1822 1610478 - 1610458 - g 85 -7.6 -4.84359 | TCAGGGTTAGAAAAA CTGATCAG TATTG CCGATCAG TTGGACATCAATACC VF_1455 1609798 - 1611483 + | mechanosensitive ion channel TERM 1823 1611488 - 1611523 + T 95 -12 -4.02979 | opp_overlap 1611490, overlap 1611490 AAGACAGCTAAACAA AAGTGCCATGCGTATT CAAT AATAGGCATGGCACTG TTTCATTCATCTTTT TERM 1824 1611521 - 1611490 - T 100 -14.6 -4.92385 | opp_overlap 1611490 1611488 GACAGCTAAACAAAA GTGCCATGCGTATT CAAT AATAGGCATGGCAC TGTTTCATTCATCTT TERM 1825 1611490 - 1611521 + T 100 -14.6 -3.58518 | opp_overlap 1611490, overlap 1611488 GACAGCTAAACAAAA GTGCCATGCGTATT CAAT AATAGGCATGGCAC TGTTTCATTCATCTT VF_1456 1612196 - 1611567 - | homoserine/homoserine lactone efflux protein VF_2622 1612418 - 1612549 + | hypothetical protein TERM 1826 1612590 - 1612611 + F 95 -8.7 -5.36314 | AGCTTCTCTCTCATT TGGCCTCGA ACTC TCGGGGTCA TTTTTTGATATTTTA TERM 1827 1613057 - 1613035 - g 77 -9.9 -3.56092 | TTAGCAGGCTCTAAA TGTGAGCAC GCTTG GCGCTCACA ACGCAGTGAAAACGA VF_1457 1612714 - 1614198 + | thermostable carboxypeptidase 1 TERM 1828 1614244 - 1614267 + F 93 -8.2 -5.49234 | opp_overlap 1614239 1614244 AAGTAATTAAGAAAA TGGATGTAGT TTTG GCTGCATCCA TTTTTTGTTCAATAT TERM 1829 1614267 - 1614244 - f 74 -5.3 -4.81082 | opp_overlap 1614244, overlap 1614239 AAGTAATTAAGAAAA TGGATGTAG TTTTGG CTGCATCCA TTTTTTGTTCAATAT VF_1458 1614411 - 1615541 + | threonine synthase VF_1459 1615544 - 1615921 + | endoribonuclease L-PSP, putative VF_1460 1616771 - 1615926 - | LysR family transcriptional regulator TERM 1830 1617033 - 1617060 + r 100 -12.9 -4.00234 | opp_overlap 1617033 TCCCGTATCAAAAAA TGGATGTGGTT ATTTAA AACCACATCCA TTCTTATATTAATTA TERM 1831 1617060 - 1617033 - R 100 -12.9 -5.14563 | opp_overlap 1617033 TCCCGTATCAAAAAA TGGATGTGGTT ATTTAA AACCACATCCA TTCTTATATTAATTA VF_1461 1619206 - 1617191 - | hypothetical protein VF_1462 1619667 - 1619203 - | hypothetical protein VF_1463 1620788 - 1619664 - | hypothetical protein TERM 1832 1620241 - 1620263 + g 70 -9.4 -2.74019 | opp_overlap 1620240 1620239 GGAACACCAATAAGC TTAGAAAAAA TCA TTTTTTCTAA TACTTGAACGTTATC VF_1464 1621074 - 1622471 + | superfamily I DNA/RNA helicase VF_1465 1622583 - 1623986 + | superfamily I DNA/RNA helicase VF_1466 1624259 - 1624681 + | small heat shock protein TERM 1833 1626642 - 1626617 - g 72 -3.2 -5.06816 | ATTGCTCAACAAAAA GCTCAAGCAC AACAAG GTGCACAAGC TGGTGAGCAACCTAA VF_1467 1624805 - 1626703 + | molecular chaperone DnaK TERM 1834 1626751 - 1626777 + T 100 -11.7 -5.46276 | gap 1, opp_overlap 1626748 1626747 1626751 TAATAAGAAAATTCA GGGCGTATTGAG GAAA CTCA-TACGCCC TTTTTTATATCTGTT TERM 1835 1626777 - 1626751 - T 83 -11.7 -2.88634 | gap 1, opp_overlap 1626751, overlap 1626748 1626747 TAATAAGAAAATTCA GGGCGTATTGAG GAAA CTCA-TACGCCC TTTTTTATATCTGTT VF_1468 1627437 - 1626802 - | hypothetical protein TERM 1836 1627612 - 1627661 + H 87 -10.2 -3.86981 | opp_overlap 1627612 1627611 1627636, overlap 1627614 1627637 AGCGCACAAACCAAC TTTATCCTCGATCGGGGATA TACATTGACT TATCCCCGATAGGGGATATA TTATTAATTATCCTC TERM 1837 1627614 - 1627659 + H 93 -12.8 -3.51235 | opp_overlap 1627612 1627611 1627636, overlap 1627612 1627637 CGCACAAACCAACTT TATCCTCGATCGGGGATA TACATTGACT TATCCCCGATAGGGGATA TATTATTAATTATCC TERM 1838 1627637 - 1627692 + H 72 -9.2 -2.66634 | gap 1, opp_overlap 1627612 1627611 1627636, overlap 1627614 1627612 ATCGGGGATATACAT TGACTTATCCCCGATAGGGGATATATT ATT AAT-TATCCTCTACCGGGGATATCACA TAATATGATGGGGTG hipB 1627697 - 1627960 + | DNA-binding transcriptional regulator HipB hipA 1627960 - 1629279 + | HipA serine kinase, regulator with HipB, putative TA-system TERM 1839 1629321 - 1629297 - T 76 -4.2 -5.1675 | opp_overlap 1629296 1629297 CGAGTGATTAAAAAA TGGATGTAGG TATTG CCGGCATCCA CTTTTCTAGTTAGCG TERM 1840 1629378 - 1629357 - T 83 -7.4 -4.82901 | opp_overlap 1629357, overlap 1629371 GTTTTTGGAGAAAAA TGAGTTAG AAAAAA CTAACTCA TTAGATATACACAGG TERM 1841 1629382 - 1629371 - T 74 -3 -5.28778 | opp_overlap 1629357, overlap 1629357 ATGAGTTAGAAAAAA CTAA CTCA TTAG ATATACACAGGGGAA VF_1471 1631259 - 1629688 - | hypothetical protein VF_1472 1631482 - 1631297 - | zinc finger protein TERM 1842 1631559 - 1631534 - H 80 -6.3 -4.82901 | TGTGGTTCACAAAAA GATCAACTAAT TCAA ACTAGTTAATC GAAATGGTGATCTAG VF_1473 1631647 - 1631922 + | hypothetical protein VF_1474 1631924 - 1632475 + | putative exonuclease VF_1475 1633325 - 1632426 - | LysR family transcriptional regulator VF_1476 1633456 - 1635141 + | exoenzyme regulatory protein AepA precursor TERM 1843 1635190 - 1635153 - f 72 -4.9 -4.72545 | opp_overlap 1635163 1635184, overlap 1635156 ATAAAAAGAAAATAA CAACAAAGAAGCAGCTA AGGT TGGCTGCTTTTTTGTAA ATCTGCAAATTCATC TERM 1844 1635187 - 1635156 - f 89 -8.8 -4.37507 | opp_overlap 1635163 1635184, overlap 1635153 AAAAGAAAATAACAA CAAAGAAGCAGCTA AGGT TGGCTGCTTTTTTG TAAATCTGCAAATTC TERM 1845 1635163 - 1635180 + F 89 -7.7 -5.29782 | opp_overlap 1635156 1635153 AATAACAACAAAGAA GCAGCTA AGGT TGGCTGC TTTTTTGTAAATCTG VF_1477 1635301 - 1636287 + | TPR repeat-containing protein VF_1478 1636424 - 1636594 + | hypothetical protein TERM 1846 1636604 - 1636627 + T 100 -11.1 -5.1104 | opp_overlap 1636604 AAGTAAAAATAAAAA TGCCGATGA CGTTAA TCATCGGCA TTTTTGTATGTGTTT TERM 1847 1636627 - 1636604 - T 100 -11.8 -5.67529 | opp_overlap 1636604 AAGTAAAAATAAAAA TGCCGATGAC GTTA ATCATCGGCA TTTTTGTATGTGTTT aqpZ 1637344 - 1636658 - | aquaporin Z TERM 1848 1637620 - 1637593 - R 93 -9.3 -4.43351 | opp_overlap 1637598, overlap 1637598 ATACCCCAAAAACAA CAAAAGCTTGG ATTTCG CCAAGCTTTTA TAAGAGTTAATCTCA TERM 1849 1637598 - 1637615 + r 78 -7 -4.4017 | opp_overlap 1637593 1637598 CCAAAAACAACAAAA GCTTGG ATTTCG CCAAGC TTTTATAAGAGTTAA TERM 1850 1637615 - 1637598 - R 88 -7 -5.16681 | opp_overlap 1637598, overlap 1637593 CCAAAAACAACAAAA GCTTGG ATTTCG CCAAGC TTTTATAAGAGTTAA VF_1480 1638210 - 1637638 - | hypothetical protein TERM 1851 1638889 - 1638877 - g 71 -4.9 -4.58283 | TAACCCCGGCAAAAA TTGAT GAT ATCAA CGCAACTCTTACCTC TERM 1852 1639709 - 1639687 - g 76 -9.2 -3.70446 | TCACACCGAATACAA CCACCAAC TTTCCTG GTTGGTGG CGAATTCCACACTCA VF_1481 1638591 - 1640501 + | penicillin binding protein transpeptidase TERM 1853 1640599 - 1640563 - f 100 -10.3 -4.08887 | opp_overlap 1640561 ATCATCGAAATTAAA TGCCGTTTGCAAATAAA AAA TATATTTACAAGCGGCA CACTAATTTTTCTTC TERM 1854 1640923 - 1640935 + G 71 -6.3 -4.15788 | CGTTAATAAAGGGCT TTCTG AAC CAGAA TTTATTGCCAAAATT sbcB 1640693 - 1642117 + | exonuclease I TERM 1855 1642266 - 1642287 + G 75 -5.9 -4.7254 | gap 1, opp_overlap 1642266 TATTTGCAAACCAGA TTGGACAGCC ACA GGTTG-CCAA TTTTTCATGCGCAAT VF_1483 1642114 - 1642464 + | murein hydrolase exporter yohK 1642464 - 1643138 + | inner membrane protein TERM 1856 1643172 - 1643218 + F 74 -6.8 -4.43864 | opp_overlap 1643190 1643194, overlap 1643175 1643177 CAATATGGTGTGACT TCTCTCTCATTGATGTAA TTTATGTAACT TTACATCAATGAGTGTGA TTTTGATCTATGTTT cdd 1643290 - 1644183 + | cytidine deaminase TERM 1857 1644214 - 1644244 + T 85 -9.1 -3.95042 | opp_overlap 1644220, overlap 1644220 CTTTAAATAGATGAC TTAAAAGGAGGCT TTATT GGCCTCCTTTTTA TTTGATTAACATTTT TERM 1858 1644238 - 1644220 - T 78 -7.4 -4.23054 | opp_overlap 1644214 1644220 ATAGATGACTTAAAA GGAGGC TTTATTG GCCTCC TTTTTATTTGATTAA TERM 1859 1644220 - 1644238 + T 90 -8.1 -5.38326 | opp_overlap 1644220, overlap 1644214 ATAGATGACTTAAAA GGAGGCT TTATT GGCCTCC TTTTTATTTGATTAA VF_1486 1645429 - 1644266 - | glutamyl-tRNA(Gln) amidotransferase, subunit A TERM 1860 1646417 - 1646407 - g 70 -8.2 -3.65828 | opp_overlap 1646406 1646403 1646399 1646407 AGAGAAAGTGGTAAA CGCC CTT GGCG GTTATGGCTTATTTG purT 1645646 - 1646821 + | phosphoribosylglycinamide formyltransferase 2 TERM 1861 1646833 - 1646869 + F 100 -10.3 -5.11937 | opp_overlap 1646833 TTAAGTTACAAATAT GTATAGCAGAATGGTTT CAA ATACCGTTCTGTTGTAC TTTTTTAACCTTCTT TERM 1862 1647738 - 1647750 + G 71 -6.3 -4.18042 | GCTTGTAGCAAGTTC GTTCT CTA AGAAC TTTGGTTTGTATAAC aspC 1647001 - 1648200 + | aromatic amino acid aminotransferase TERM 1863 1648253 - 1648226 - T 71 -8.5 -3.10959 | opp_overlap 1648231, overlap 1648231 TAATTGTAAGACATA GAAAAGGCGCT TTAATT AGCGCCTTTTT TTATGCCAGTTTCAC TERM 1864 1648248 - 1648231 - T 86 -8.4 -4.68124 | opp_overlap 1648231, overlap 1648226 GTAAGACATAGAAAA GGCGCT TTAATT AGCGCC TTTTTTTATGCCAGT TERM 1865 1648231 - 1648248 + T 93 -8.4 -5.61596 | opp_overlap 1648226 1648231 GTAAGACATAGAAAA GGCGCT TTAATT AGCGCC TTTTTTTATGCCAGT VF_1489 1649458 - 1648265 - | hypothetical protein TERM 1866 1649431 - 1649408 - G 100 -9.6 -5.4477 | opp_overlap 1649406 1649408 AAATTGCCAAAAAAA GACCGTCTGC GATA ACAAACGGTC TATATTTAAAAACTG cysB 1650465 - 1649491 - | transcriptional regulator CysB VF_1491 1650733 - 1651512 + | ATPase involved in DNA repair TERM 1867 1651524 - 1651558 + T 100 -16 -3.12449 | opp_overlap 1651533, overlap 1651533 GTAACCAATACCTAC CAAAAAAAAGATCGCA TAA TGCGATCTTTTTTATG TCTGTCTTAATAACA TERM 1868 1651549 - 1651533 - T 100 -10.9 -5.86965 | opp_overlap 1651533 1651524 ACCTACCAAAAAAAA GATCGCA TAA TGCGATC TTTTTTATGTCTGTC TERM 1869 1651533 - 1651549 + T 100 -10.9 -5.4492 | opp_overlap 1651533, overlap 1651524 ACCTACCAAAAAAAA GATCGCA TAA TGCGATC TTTTTTATGTCTGTC VF_1492 1652333 - 1651575 - | tRNA-(MS(2)IO(6)A)-hydroxylase VF_1493 1652557 - 1652940 + | hypothetical protein VF_1494 1653357 - 1652971 - | transporter TERM 1870 1653192 - 1653180 - G 70 -5.5 -4.39277 | opp_overlap 1653180 1653183 TAATATGAGAAGAAA GCACT TGA AGCGC TTCTGCTTGAAGTCT TERM 1871 1653575 - 1653560 - R 86 -6.1 -5.4505 | opp_overlap 1653560 1653554 TTTGGCAACAAAAAA CCGCT ACAATG AGCGG TTTTTATATCATTTG TERM 1872 1653560 - 1653575 + r 83 -6.1 -5.06585 | opp_overlap 1653560, overlap 1653554 TTTGGCAACAAAAAA CCGCT ACAATG AGCGG TTTTTATATCATTTG VF_1495 1655292 - 1653610 - | putative cytoplasmic protein TERM 1873 1653937 - 1653952 + g 74 -4.7 -4.85396 | ATCCATTTCTGCACG CACCA CTTTCA TGGTG TTTTCTTGTGCTTCT TERM 1874 1654671 - 1654649 - G 71 -6.3 -4.20696 | overlap 1654641 CCACGAACGGTAAAA CCATCAACA CCTTT TGTTGGTGG AATGCGTCGAATCAA VF_1496 1655645 - 1655358 - | glutaredoxin VF_1497 1656431 - 1655685 - | hypothetical protein TERM 1875 1656520 - 1656531 + H 70 -4.4 -4.81814 | opp_overlap 1656520 TTAACAGAAAAAATA GCAA TCGT TTGC TTTTCTTGTGGTAGT purC 1656608 - 1657711 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1876 1657698 - 1657737 + T 80 -6.6 -4.73614 | opp_overlap 1657701 1657703, overlap 1657700 1657701 1657704 TAAAAGAAGAATATC AATTAGTCGATTAGTCGA TTAG TCGATTAGTCGATTAGTA TTTATTTTACTGATG TERM 1877 1657700 - 1657735 + T 85 -9.2 -3.97149 | opp_overlap 1657701 1657703, overlap 1657698 1657701 1657704 AAAGAAGAATATCAA TTAGTCGATTAGTCGA TTAG TCGATTAGTCGATTAG TATTTATTTTACTGA TERM 1878 1657701 - 1657734 + T 80 -10.5 -2.97205 | opp_overlap 1657701 1657703, overlap 1657700 1657698 1657704 AAGAAGAATATCAAT TAGTCGATTAGTCGA TTAG TCGATTAGTCGATTA GTATTTATTTTACTG TERM 1879 1657704 - 1657731 + T 82 -10 -3.60072 | opp_overlap 1657703 1657701, overlap 1657701 1657700 1657698 AAGAATATCAATTAG TCGATTAGTCGA TTAG TCGATTAGTCGA TTAGTATTTATTTTA TERM 1880 1657765 - 1657785 + T 95 -8.9 -5.47431 | opp_overlap 1657765 ATGACCAAATAAAAA TGGCGACCG CAT TGGCCGCCA TTTTTTATCTCTTCA TERM 1881 1657785 - 1657765 - T 100 -10.4 -5.34309 | opp_overlap 1657765 ATGACCAAATAAAAA TGGCGACC GCATT GGCCGCCA TTTTTTATCTCTTCA VF_1499 1658300 - 1657827 - | hypothetical protein TERM 1882 1658345 - 1658325 - R 75 -9.7 -2.53422 | opp_overlap 1658325, overlap 1658324 1658323 1658327 TATTTTTACAAAAGG GAGCGGCAA CCT TTGACGCTC TTTTTAATATTATGG TERM 1883 1658325 - 1658345 + r 100 -9.7 -4.90906 | opp_overlap 1658324 1658323 1658325 1658327 TATTTTTACAAAAGG GAGCGGCAA CCT TTGACGCTC TTTTTAATATTATGG VF_1500 1662249 - 1658410 - | ATP-dependent RNA helicase HrpA TERM 1884 1659132 - 1659144 + g 71 -6.3 -4.14397 | opp_overlap 1659142 TGTGCTGCTCTTCTT CTGTT TCA AACAG TTTAATTTCTACACT TERM 1885 1661080 - 1661060 - G 72 -3.3 -5.02323 | GGACGAGAAATAAAA TCTTCTTCA GAG TAAAGACGA ATACAGATACCTTCA TERM 1886 1661360 - 1661370 + g 79 -5.4 -4.94902 | ACAATTTCCGTATCA CGTA GAT TACG TTTTTCTAATGCTTC TERM 1887 1662018 - 1662031 + g 77 -5.3 -4.9445 | opp_overlap 1662018, overlap 1662012 TTTCACCAGCAACGA TAACC ACTT GGTTA TTTTTGATTGCTTCT TERM 1888 1662526 - 1662510 - g 77 -8.7 -3.93369 | TTAACGGTAAGCAAA TCGAGCG TGA CGCTCAA GGGTATTTAAAAAAC TERM 1889 1662558 - 1662541 - g 72 -3.4 -5.09225 | overlap 1662542 AGGGTATTTAAAAAA CCACAC AGATTG GTGTGA AGAGTTAGTTCCACT TERM 1890 1662711 - 1662701 - g 72 -4.6 -4.788 | AAAGCAATGGAAAAA GAGC ATG GCCC TGAAAAAGGTAACAG tusE 1662488 - 1662814 + | sulfur transfer protein TusE TERM 1891 1662837 - 1662878 + T 83 -9.7 -3.72756 | CTTATTGCTTAACTT TGGCAAGAATTAATACATT TTAA AATCCGTTAATTCTTGCCA TTGTGTCTCTTCTTG VF_1502 1663118 - 1662846 - | acylphosphatase VF_1503 1663205 - 1664608 + | methyl-accepting chemotaxis protein TERM 1892 1665212 - 1665191 - g 73 -5.9 -4.65512 | overlap 1665184 AAAAGAATTACAAAA GGCATTTGT ATCC ACAAACACC CATATCAAAGAGAAC VF_1504 1664907 - 1666868 + | methyl-accepting chemotaxis protein TERM 1893 1666888 - 1666914 + F 100 -14.6 -4.67692 | opp_overlap 1666887 ACTACCCTAATCTAG CCATGGAAAGTT TAA AGCTTTCCATGG TTTATTTAATTTTCA TERM 1894 1667712 - 1667698 - g 70 -2.8 -5.0666 | opp_overlap 1667699, overlap 1667699 TACGTAAAAAATAAA TCAGTT CTA AACTGT TTCTCTTATACTGGT TERM 1895 1667699 - 1667711 + G 71 -6.3 -4.29304 | opp_overlap 1667698 1667699 ACGTAAAAAATAAAT CAGTT CTA AACTG TTTCTCTTATACTGG VF_1505 1667032 - 1668222 + | methyltransferase TERM 1896 1668299 - 1668275 - T 100 -16.5 -5.61689 | opp_overlap 1668275 AAAATCAATAAAAAA GGCGAGCAGGT ATT ACCTACTCGCC TTTTTATATTCACTT TERM 1897 1668275 - 1668299 + T 100 -14.3 -5.1167 | opp_overlap 1668275 AAAATCAATAAAAAA GGCGAGCAGGT ATT ACCTACTCGCC TTTTTATATTCACTT rtxA1 1680238 - 1668323 - | RTX repeat-containing calcium-binding cytotoxin RtxA1 TERM 1898 1671722 - 1671741 + g 76 -3.6 -5.31545 | opp_overlap 1671721 1671722 AGGATCGGTTACAAC TAACGTAT TAGA ATCCGTTA TTTTTTCGTCTTCTT TERM 1899 1676157 - 1676170 + g 71 -3.9 -4.87807 | opp_overlap 1676157 TTAGTACCTTCAAGA GAAAT AACG ATTTC TTTTTGCTCTGTTCC TERM 1900 1677454 - 1677474 + g 72 -9.8 -3.01912 | GAAAGTCATTCGTAC CGGTAACT TCGAC AGTTACCG TGTGTGTCACTGTGC TERM 1901 1677746 - 1677727 - G 88 -11.4 -3.63515 | CGGTATCTTCAACAA CGGCACCG GTAT CGGTACCG CTGATAACTGGGCCA TERM 1902 1678391 - 1678372 - G 88 -11.4 -3.63515 | CGGTATCTTCAACAA CGGCACCG GTAT CGGTACCG CTGATAACTGGACCA TERM 1903 1678744 - 1678764 + g 72 -9.8 -3.01912 | GAAGGTCATTGGTGC CGGTAACT TCGAC AGTTACCG TGTGTGTCACTGTGC TERM 1904 1680536 - 1680524 - g 70 -3.4 -4.85653 | CAGAGACAAAAGAAA CACA ACTAG TGTG GAGTCTTTATAATGA VF_1507 1680460 - 1680810 + | hypothetical protein TERM 1905 1680842 - 1680861 + T 100 -12.2 -5.65496 | opp_overlap 1680842 AATGATAAAAATAAA GGTGGTCA ATTA TGACCACC TTTTTGTTTTTAATG TERM 1906 1680861 - 1680842 - T 100 -12.2 -5.00267 | opp_overlap 1680842 AATGATAAAAATAAA GGTGGTCA ATTA TGACCACC TTTTTGTTTTTAATG dcuD 1682346 - 1680886 - | transporter iadA 1683493 - 1682357 - | isoaspartyl dipeptidase TERM 1907 1683069 - 1683057 - G 74 -4.1 -5.16572 | opp_overlap 1683064, overlap 1683063 1683064 ACTGAAGGTAAAAAA GAGAT ATC ATCCC GAATGGATGTAGTTA TERM 1908 1683979 - 1683955 - g 75 -5.7 -4.72986 | opp_overlap 1683955 1683959 TAGCTTCATTAAAAA CAGACAATACG GTA CGAATTGTTTG TTTACATTCCTTTGC TERM 1909 1683955 - 1683979 + G 73 -7.9 -3.83214 | opp_overlap 1683955, overlap 1683959 TAGCTTCATTAAAAA CAGACAATACG GTA CGAATTGTTTG TTTACATTCCTTTGC TERM 1910 1683959 - 1683975 + G 71 -5.1 -4.50761 | opp_overlap 1683955, overlap 1683955 TTCATTAAAAACAGA CAATACG GTA CGAATTG TTTGTTTACATTCCT VF_1510 1683687 - 1684586 + | transcriptional regulator TERM 1911 1684588 - 1684607 + T 95 -6.4 -5.95286 | opp_overlap 1684588 1684583 GCTTGAAAAATTAAA GGTGGC CAATCTAA GCCACC TTTTTTGTTTTTAAT TERM 1912 1684607 - 1684588 - T 78 -7.1 -4.32046 | opp_overlap 1684588, overlap 1684583 GCTTGAAAAATTAAA GGTGGCC AATCTA AGCCACC TTTTTTGTTTTTAAT VF_1511 1686522 - 1684618 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 1913 1686686 - 1686663 - R 93 -8.2 -5.66229 | opp_overlap 1686663 ATTAACAACAAAAAA GGCCATCAAA CAAA CTTGATAGCC TTCTTACATAATCAC tpm 1687357 - 1686716 - | thiopurine S-methyltransferase TERM 1914 1687493 - 1687466 - H 71 -8.6 -3.11584 | opp_overlap 1687466, overlap 1687464 1687463 ACTTAATACAAACCA GTTATTCCATTT AGTT ATATGGAATAAC TTTTATCAATTACCC TERM 1915 1687466 - 1687493 + H 89 -8.6 -4.4715 | opp_overlap 1687466 1687464 1687463 ACTTAATACAAACCA GTTATTCCATTT AGTT ATATGGAATAAC TTTTATCAATTACCC ydjN 1687602 - 1688972 + | transporter TERM 1916 1689013 - 1688995 - T 100 -13.2 -4.98531 | opp_overlap 1688995 TCTTGAAACTAAAAA GGAAGCCA GAT TGGCTTCC TTTTTTATTTGAGAT TERM 1917 1688995 - 1689013 + T 100 -13.2 -5.64421 | opp_overlap 1688995 TCTTGAAACTAAAAA GGAAGCCA GAT TGGCTTCC TTTTTTATTTGAGAT TERM 1918 1689333 - 1689300 - T 85 -11.9 -3.14693 | opp_overlap 1689302 1689309, overlap 1689302 1689309 TTTAGTATCAACAGA TACAAAAAAGGAGCC CATT GGCTCCTTTTTTATT TTTAAGTTTTTACAA TERM 1919 1689331 - 1689302 - T 95 -14.5 -3.13163 | opp_overlap 1689302 1689309, overlap 1689300 1689309 TAGTATCAACAGATA CAAAAAAGGAGCC CATT GGCTCCTTTTTTA TTTTTAAGTTTTTAC TERM 1920 1689302 - 1689331 + T 100 -12.3 -4.92239 | opp_overlap 1689302 1689300 1689309, overlap 1689309 TAGTATCAACAGATA CAAAAAAGGAGCC CATT GGCTCCTTTTTTA TTTTTAAGTTTTTAC TERM 1921 1689309 - 1689324 + T 100 -10.4 -5.93252 | opp_overlap 1689309 1689302 1689300, overlap 1689302 AACAGATACAAAAAA GGAGCC CATT GGCTCC TTTTTTATTTTTAAG TERM 1922 1689324 - 1689309 - T 100 -10.4 -5.46276 | opp_overlap 1689302 1689309, overlap 1689302 1689300 AACAGATACAAAAAA GGAGCC CATT GGCTCC TTTTTTATTTTTAAG VF_1514 1689873 - 1689343 - | exonuclease KapD VF_1515 1691412 - 1689964 - | GGDEF domain-containing protein TERM 1923 1690851 - 1690874 + g 76 -3.2 -5.28826 | gap 1, opp_overlap 1690851 TATCTGAAGTAAATA CAGG-ATGATA AAC TAGCATGCCTG TTTTTTGTGCGCTTT TERM 1924 1692237 - 1692249 + G 70 -7.7 -3.737 | opp_overlap 1692247 AACGGGTAATGTTGT TGGTG AAG CACCA TTTAATGGCACATTA VF_1516 1691728 - 1692360 + | hypothetical protein VF_1517 1692360 - 1694180 + | DnaK-related protein TERM 1925 1694216 - 1694246 + F 100 -10.4 -4.41353 | opp_overlap 1694218 AGTTACGTATCTTAA GAGTTCAGTCACCG TTA TGGAGTCTGAACTC TTTTACTATATATCC TERM 1926 1694583 - 1694559 - g 79 -8.7 -3.98214 | ACCATGCATCACAAA GTCAAATCACT GAA AATGATCTGAC ACTGCCTTGGAATGT TERM 1927 1696434 - 1696424 - g 73 -2.4 -5.21709 | CTTGATAGTAAAAAA CGTC GTC GTCG CTCTGACAAACACGA TERM 1928 1696973 - 1696961 - g 79 -9.1 -3.96449 | opp_overlap 1696960 1696961 CAAGATTGGAAAGAA CAGCC CAT GGCTG GTTTTGCCGCAGTAA VF_1518 1694369 - 1697185 + | DnaK-related protein TERM 1929 1697271 - 1697245 - f 100 -10.2 -4.7254 | ATCTCTGATGAAAAA TTGCGCACCTCT GTC AAAGGTGTGCAA ACAACATCTTATTCG VF_2623 1697346 - 1697648 + | hypothetical protein TERM 1930 1697655 - 1697686 + T 85 -8.9 -4.1899 | opp_overlap 1697660, overlap 1697660 CGGGTATGACATATA AAAAAGCTCATTG CTTTCA CAATGAGCTTTTC TTTTACATAAAATGG TERM 1931 1697681 - 1697660 - T 100 -9.5 -5.43414 | opp_overlap 1697655 1697660 ATGACATATAAAAAA GCTCATTGC TTTC ACAATGAGC TTTTCTTTTACATAA TERM 1932 1697660 - 1697681 + T 95 -8.8 -5.10933 | opp_overlap 1697660, overlap 1697655 ATGACATATAAAAAA GCTCATTG CTTTCA CAATGAGC TTTTCTTTTACATAA VF_1519 1698185 - 1697712 - | hypothetical protein VF_1520 1698402 - 1699553 + | hypothetical protein TERM 1933 1699626 - 1699669 + T 82 -7.6 -4.61852 | gap 1, opp_overlap 1699634, overlap 1699631 1699633 1699634 ATGCTTTTCAATTCA TATAAAAATGCCGCTGATTCA CTA TGAACCAGCGGCAC-TCTATA TTTCTTTGTGCTCTT TERM 1934 1699631 - 1699665 + T 81 -10 -3.52164 | opp_overlap 1699634, overlap 1699626 1699633 1699634 TTTCAATTCATATAA AAATGCCGCTGATTCA CTA TGAACCAGCGGCACTC TATATTTCTTTGTGC TERM 1935 1699633 - 1699663 + T 91 -12.6 -3.31566 | opp_overlap 1699634, overlap 1699631 1699626 1699634 TCAATTCATATAAAA ATGCCGCTGATTCA CTA TGAACCAGCGGCAC TCTATATTTCTTTGT TERM 1936 1699662 - 1699634 - T 100 -18.3 -5.00642 | opp_overlap 1699633 1699631 1699626 1699634 CAATTCATATAAAAA TGCCGCTGATTCA CTA TGAACCAGCGGCA CTCTATATTTCTTTG TERM 1937 1699634 - 1699662 + T 100 -16.1 -2.57313 | opp_overlap 1699634, overlap 1699633 1699631 1699626 CAATTCATATAAAAA TGCCGCTGATTCA CTA TGAACCAGCGGCA CTCTATATTTCTTTG udp 1700447 - 1699689 - | uridine phosphorylase TERM 1938 1700621 - 1700639 + r 85 -8.8 -4.10672 | opp_overlap 1700621 CATAAAAATAGAAAA GCGCTCAT AAT ACGAGCGC TTTAATTTGAGTTAC TERM 1939 1700639 - 1700621 - R 100 -11 -5.02287 | opp_overlap 1700621 CATAAAAATAGAAAA GCGCTCAT AAT ACGAGCGC TTTAATTTGAGTTAC zntA 1702993 - 1700678 - | zinc/cadmium/mercury/lead-transporting ATPase TERM 1940 1702698 - 1702708 + g 100 -5.4 -5.79588 | ACAACATCTGGAATG GCAA GAA TTGC TTTTTTTAGTTTTGC TERM 1941 1703069 - 1703050 - R 82 -8.6 -4.08546 | ACCATTAACTATAAA CCTTAGAG TTAA CTCCAAGG TCAAGAATATTTTTT TERM 1942 1703101 - 1703114 + r 80 -6.7 -4.82901 | opp_overlap 1703093 1703101 TTTGAAACAAAAAAA GACAC CGAA GTGTC TTTTTATAAGAAGAG TERM 1943 1703114 - 1703101 - R 95 -6.7 -5.95539 | opp_overlap 1703101, overlap 1703093 TTTGAAACAAAAAAA GACAC CGAA GTGTC TTTTTATAAGAAGAG VF_1523 1703556 - 1703140 - | CBS domain-containing protein VF_1524 1705277 - 1703685 - | hypothetical protein TERM 1944 1705393 - 1705425 + r 79 -10 -3.15677 | opp_overlap 1705393 1705394 AACTCGTTACAGGAA TTTCGCGCTACTTT ACCAC AAAGTAGCGCAAAG TTAGATCATTATATG TERM 1945 1705425 - 1705393 - R 86 -10.7 -3.26319 | opp_overlap 1705393, overlap 1705394 AACTCGTTACAGGAA TTTCGCGCTACTTTA CCA CAAAGTAGCGCAAAG TTAGATCATTATATG TERM 1946 1705424 - 1705394 - R 93 -14.2 -2.5547 | opp_overlap 1705393, overlap 1705393 ACTCGTTACAGGAAT TTCGCGCTACTTTA CCA CAAAGTAGCGCAAA GTTAGATCATTATAT ydiJ 1708466 - 1705434 - | FAD-linked oxidoreductase TERM 1947 1706501 - 1706518 + g 83 -7.1 -4.67607 | CTTCATGAACTTCGT GAGAATA ATCG TATTCTC TTTCTTTATTAAACG TERM 1948 1707263 - 1707275 + g 72 -3.3 -5.03715 | CCTTTGTCGCCCCAA GCAGT CCT ACCGC TTTTTTGCGCATCGT TERM 1949 1707600 - 1707579 - G 73 -7.3 -3.97947 | CGCATCTACCATAAA TGGGGCATT TCTT AATGCCGCA TCAAAGCTGTCATAT TERM 1950 1708917 - 1708899 - g 71 -7.4 -3.92276 | overlap 1708897 ACTATATACAAAATA CATGCGCA ATA TGGGCATG CCAGCTGAAGAATTA VF_1526 1708648 - 1709337 + | hypothetical protein TERM 1951 1709379 - 1709401 + T 100 -10.7 -5.95539 | opp_overlap 1709379 TTCCAAATAAAAAAA CAGCCAATA ATTAA TATTGGCTG TTTTTTTATTTAAAA TERM 1952 1709401 - 1709379 - T 100 -10.7 -5.95539 | opp_overlap 1709379 TTCCAAATAAAAAAA CAGCCAATA ATTAA TATTGGCTG TTTTTTTATTTAAAA ansB 1710495 - 1709434 - | L-asparaginase II TERM 1953 1709775 - 1709786 + g 72 -4.4 -4.82855 | opp_overlap 1709769 1709775 TGTACACAATACCAA CCTT AGGT AAGG TTTTTAACTTTGATA VF_1528 1710834 - 1711523 + | transcriptional regulator SyrB VF_1529 1711637 - 1711819 + | hypothetical protein VF_1530 1712498 - 1711803 - | GntR family transcriptional regulator VF_1531 1713448 - 1712507 - | ferrochelatase VF_1532 1713837 - 1714865 + | general L-amino acid-binding protein TERM 1954 1714907 - 1714924 + F 100 -11.3 -4.28548 | opp_overlap 1714906 1714902, overlap 1714923 AAAAACACAATTTAT GGGGTGA ATCT TCACCCC TTTTAATAAATGGAT TERM 1955 1715013 - 1715037 + G 73 -5.8 -4.62054 | gap 1 CGTGCGATTTTATTT CAAGTGATAGC AGTT GCTG-CACTTG TCTTTTTTTTCTACA aapQ 1714956 - 1716122 + | amino-acid transporter permease aapM 1716125 - 1717222 + | amino-acid transporter permease TERM 1956 1717934 - 1717924 - g 70 -3.2 -4.85918 | opp_overlap 1717919, overlap 1717919 GATCATAGAAGAAAA CAAC CCT GTCG ATTTCTTTGAGAACC aapP 1717250 - 1717999 + | amino-acid transporter ATPase TERM 1957 1718028 - 1718049 + F 79 -5.2 -5.07486 | opp_overlap 1718028 AATCCTCAAGTTAAA GCAGTGAT CGTTTA ATTACTGC TTTTTGTTACAGATG yccA 1718218 - 1718880 + | inner membrane protein TERM 1958 1718923 - 1718904 - T 100 -12.2 -6.11243 | opp_overlap 1718904 ATCGAATAAAAAAAA TGCCAGTC AATC GACTGGCA TTTTTGTATCTATGG TERM 1959 1718904 - 1718923 + T 100 -12.2 -5.07275 | opp_overlap 1718904 ATCGAATAAAAAAAA TGCCAGTC AATC GACTGGCA TTTTTGTATCTATGG VF_1537 1719998 - 1718973 - | hypothetical protein VF_1538 1720237 - 1722591 + | hypothetical protein VF_1539 1722593 - 1723468 + | transporter TERM 1960 1723480 - 1723507 + F 77 -8.5 -3.54672 | opp_overlap 1723482, overlap 1723478 1723482 ATAGTTATTCTATTA AAGGTAGCATG ATAAAC CATGCTACCTC TCTCTTTTCTCTCTT TERM 1961 1723482 - 1723505 + F 86 -11.1 -3.32432 | opp_overlap 1723482, overlap 1723480 1723478 AGTTATTCTATTAAA GGTAGCATG ATAAAC CATGCTACC TCTCTCTTTTCTCTC TERM 1962 1723505 - 1723482 - f 91 -11.8 -3.74872 | opp_overlap 1723482 1723480 1723478 AGTTATTCTATTAAA GGTAGCATGA TAAA CCATGCTACC TCTCTCTTTTCTCTC VF_1540 1723607 - 1724302 + | suppressor/enhancer of lin-12 TERM 1963 1724333 - 1724361 + T 100 -13.2 -4.95876 | opp_overlap 1724321 1724333 TAAGCAGACAAACAA GGCCACATCAGT AATTC ACTGATGCGGCC TTTTTAATTATCGTT TERM 1964 1724361 - 1724333 - T 100 -16.1 -4.18421 | opp_overlap 1724333, overlap 1724321 TAAGCAGACAAACAA GGCCACATCAGTA ATT CACTGATGCGGCC TTTTTAATTATCGTT VF_1541 1725841 - 1724369 - | phosphohydrolase (MutT/nudix family protein) VF_1542 1726325 - 1725849 - | acetyltransferase TERM 1965 1726402 - 1726383 - R 100 -7.8 -6.23545 | opp_overlap 1726383 GCTAAACAAAAAAAA GGCTCGGA ATAA TCAGAGCC TTGAATCATTGAGGT VF_1543 1727784 - 1726441 - | long-chain fatty acid transport protein precursor TERM 1966 1727430 - 1727420 - G 74 -4 -5.04175 | TGAATTACATAAAAA TTTG GAA CAAA CTCCGTTCCTGCAAT VF_1544 1728185 - 1728859 + | phosphatidylglycerophosphatase B-like protein yjiE 1729737 - 1728856 - | DNA-binding transcriptional regulator TERM 1967 1728948 - 1728978 + g 95 -9.1 -5.39721 | opp_overlap 1728948 AATATTCAATAGGAA GTCGCAGTGATTG TTCAC CGATTATTGCGAC TTTTTTCTGTGCTAA TERM 1968 1730602 - 1730620 + G 89 -9.6 -4.23213 | ACCCGCTTCTTTCAT TGCTGCAA TGG TTGCGGCA TTTATTGCCTCTCGA VF_1546 1730066 - 1731367 + | anaerobic C4-dicarboxylate transporter VF_1547 1731409 - 1732119 + | aspartate racemase nrfF 1732565 - 1732116 - | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF VF_1549 1733092 - 1732565 - | thiol:disulfide interchange protein TlpA nrfE 1734975 - 1733089 - | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE TERM 1969 1735002 - 1735041 + r 86 -10.8 -3.23711 | opp_overlap 1735003, overlap 1735003 CATTTTTCACATAAA AGCCATGCTTATGCTCGT CATT ATTGGCATAAGCATGGCA TTACTACATTATACG TERM 1970 1735040 - 1735003 - R 100 -11.5 -4.52857 | opp_overlap 1735003 1735002 ATTTTTCACATAAAA GCCATGCTTATGC TCGTCATTATTG GCATAAGCATGGC ATTACTACATTATAC TERM 1971 1735003 - 1735040 + r 93 -14.3 -2.53905 | opp_overlap 1735003, overlap 1735002 ATTTTTCACATAAAA GCCATGCTTATGCTCGT CATT ATTGGCATAAGCATGGC ATTACTACATTATAC nrfD 1736006 - 1735050 - | formate-dependent nitrite reductase, membrane subunit TERM 1972 1735146 - 1735136 - G 75 -2.6 -5.19328 | ATGTCACAACAAAAA TAAA CCC TTTA CCGTGAACCAATTCC nfrC 1736694 - 1736008 - | formate-dependent nitrite reductase, 4Fe4S subunit nrfB 1737289 - 1736696 - | cytochrome c-type protein NrfB TERM 1973 1737550 - 1737536 - H 81 -5.8 -4.90778 | GTTATTTAAAGAAAA TAAGAA TCA TTCTTA ATAAAGATAATCGCA TERM 1974 1737596 - 1737571 - H 73 -6.9 -3.97689 | opp_overlap 1737578 GATAATCGCAAATAA CACTTAAGAGG TATA CCTCTTTAATG GTGATATTGATCACT nfrA 1737759 - 1739195 + | cytochrome c nitrite reductase TERM 1975 1739255 - 1739226 - T 89 -9.4 -4.26202 | opp_overlap 1739232, overlap 1739232 ACAGGTAGTAATAAA TAAAAAGCCGAC AGTTAA GTCGGCTTTTTT ATGTTTCTTATTTAT TERM 1976 1739232 - 1739249 + T 93 -8.4 -5.61913 | opp_overlap 1739226 1739232 AGTAATAAATAAAAA GCCGAC AGTTAA GTCGGC TTTTTTATGTTTCTT TERM 1977 1739249 - 1739232 - T 93 -8.4 -5.48514 | opp_overlap 1739232, overlap 1739226 AGTAATAAATAAAAA GCCGAC AGTTAA GTCGGC TTTTTTATGTTTCTT nrfG 1739936 - 1739289 - | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG VF_2624 1740007 - 1739933 - | hypothetical protein TERM 1978 1740054 - 1740036 - R 91 -4.6 -5.88197 | opp_overlap 1740036 CCAAACATAAAAAAA GCTTCT TGATCAC AGAAGC TTTAAATTTTTCGCA pldA 1740859 - 1740086 - | outer membrane phospholipase A VF_1557 1743297 - 1740955 - | ATP-dependent helicase HrpA TERM 1979 1741280 - 1741290 + g 73 -5.4 -4.58585 | CTCTCAAATGTGACA GAAG AGA CTTC TTTATTATTTAACTG TERM 1980 1741845 - 1741863 + g 71 -7.4 -3.86897 | opp_overlap 1741844 1741841 GTATTGATAATTTAC GAGCTTCA GAT TGCAGCTC TTTATCAACAATAAC TERM 1981 1742281 - 1742297 + g 75 -2.9 -5.31275 | TAGCTCTTCCCGTTG CAACTCT GGT GGTGTTG TTTTTTCTAATGGCG maeA 1743452 - 1745140 + | malate dehydrogenase TERM 1982 1745164 - 1745184 + F 100 -10.5 -5.82388 | opp_overlap 1745149 1745164 TGATTTAACTATAAA CCAGAGTAA CTA TTGCTCTGG TTTTTTTTCAACTTT TERM 1983 1745184 - 1745164 - f 79 -8.3 -4.06904 | opp_overlap 1745164, overlap 1745149 TGATTTAACTATAAA CCAGAGTAA CTA TTGCTCTGG TTTTTTTTCAACTTT TERM 1984 1745378 - 1745400 + G 71 -4.1 -4.90266 | opp_overlap 1745378 1745380, overlap 1745380 TTAACCGTGCATTAA GAGCTTTCT TAGCT GGAAAGCAC TTTTTAATTCGTACC VF_1559 1745251 - 1745583 + | hypothetical protein sanA 1745610 - 1746287 + | SanA protein TERM 1985 1746315 - 1746335 + T 90 -11.2 -3.69434 | opp_overlap 1746315 CATTAGATATAAAAA CCCTAGCT TCAGC AGCTAGGG TTTGAACTTAATTCA TERM 1986 1746335 - 1746315 - T 100 -11.2 -5.05601 | opp_overlap 1746315 CATTAGATATAAAAA CCCTAGCT TCAGC AGCTAGGG TTTGAACTTAATTCA VF_1561 1747674 - 1746343 - | GGDEF domain-containing protein TERM 1987 1747944 - 1747929 - R 100 -10.4 -5.5604 | GCAATCAATAAAAAA GCGCCT GTTT AGGCGC TTAAGAAATGAGGTT VF_1562 1749311 - 1747971 - | hypothetical protein TERM 1988 1748522 - 1748532 + g 81 -2.6 -5.66229 | CTCTCAAATAAGGTT TATT ACC AATA TTTTTTCTTGTTGAT VF_1563 1749451 - 1749819 + | hypothetical protein TERM 1989 1749809 - 1749827 + T 95 -8.9 -5.50925 | opp_overlap 1749809 TAGAAAATAAAAAAA TAGGCGT ATAAC ACGCCTA TTTTTTATCTTAATT TERM 1990 1749827 - 1749809 - T 100 -9.6 -6.14618 | opp_overlap 1749809 TAGAAAATAAAAAAA TAGGCGTA TAA CACGCCTA TTTTTTATCTTAATT VF_1564 1750692 - 1749850 - | hypothetical protein VF_1565 1752391 - 1750682 - | cobalt transport ATP-binding protein CbiO TERM 1991 1751134 - 1751152 + g 80 -4.6 -5.29782 | opp_overlap 1751134 1751145 GGCTTAAACCACACA GTTCTAAA GCA TTAAGAAC TTTTTTCTCAATATC TERM 1992 1751816 - 1751806 - G 71 -6.8 -4.09963 | opp_overlap 1751805 1751806 GCTCAATAATAACAA CGGT CTT ACCG CTATTTTTATGCAGG TERM 1993 1752279 - 1752296 + g 71 -6.3 -4.21098 | TTGCCGCTTCCACTT GGTCCTA TAAT TAGGATC TTTTCACCTTGCTCT VF_1566 1752946 - 1752395 - | hypothetical protein TERM 1994 1752765 - 1752747 - G 73 -9.6 -3.25918 | overlap 1752745 1752743 CAACCTGCAAATAGA TCAGTCAC CCA GTGACCGA TAAAACCAACCAGAA TERM 1995 1753030 - 1753047 + r 72 -2.7 -5.36441 | GTTTGGAAATGTTTA CATCTAG ACGG CTATATG TTTTTTATATAAAAA TERM 1996 1753082 - 1753064 - R 100 -11.8 -5.36441 | TTTTTATATAAAAAA GCTCACTA GCA TAGTGAGC TTAAAAATCATAAAT VF_1567 1755271 - 1753103 - | hypothetical protein TERM 1997 1755530 - 1755551 + r 95 -13.1 -3.62775 | opp_overlap 1755530 TGCAGGAATAAAAAA GGCTCATCA TTTC TGATGAGCC TTCTTAAAAGATGGT TERM 1998 1755551 - 1755530 - R 100 -13.1 -5.5112 | opp_overlap 1755530 TGCAGGAATAAAAAA GGCTCATCA TTTC TGATGAGCC TTCTTAAAAGATGGT TERM 1999 1755604 - 1755624 + r 79 -10.5 -2.89742 | overlap 1755607 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2000 1755607 - 1755621 + r 77 -8.6 -3.5947 | overlap 1755604 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2001 1755700 - 1755717 + r 73 -4.1 -4.98531 | opp_overlap 1755703 AAACACCATCTGTAA TTACCGC TATT GCAGTAA TTTTTAATTTGGAGC TERM 2002 1755972 - 1755992 + r 79 -10.5 -2.89742 | overlap 1755975 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2003 1755975 - 1755989 + r 77 -8.6 -3.5947 | overlap 1755972 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2004 1756358 - 1756331 - R 79 -3.6 -5.47821 | ACTGATTTAAAAAAA GAGTCAAATA AAAATTAG TATTTAACTC TCCGTTTGTAGACTT rluF 1757364 - 1756420 - | 23S rRNA pseudouridine synthase TERM 2005 1757453 - 1757428 - R 100 -14.1 -5.49234 | opp_overlap 1757428 ATATCCAATAAAAAA GCACCCTAAAC CAAT GCTTAGGGTGC TTTACTACAACGTAA TERM 2006 1757428 - 1757453 + r 91 -11.9 -3.73224 | opp_overlap 1757428 ATATCCAATAAAAAA GCACCCTAAAC CAAT GCTTAGGGTGC TTTACTACAACGTAA VF_1569 1758922 - 1757477 - | hypothetical protein TERM 2007 1758254 - 1758265 + g 75 -5.8 -4.68424 | ACTAATAGGTGCAAT GGCT TTAA AGCC TTTTTGCGTCAATTG TERM 2008 1759070 - 1759050 - R 100 -15.5 -5.28176 | overlap 1759039 TTCAGGCATAAAAAA GCCGCTCAT AGT ATGAGCGGC CAAATCAAAAAATTA TERM 2009 1759099 - 1759083 - R 74 -3.1 -5.37593 | GGCCAAATCAAAAAA TTAACTA TAT TAATTAA AATTAGTCACCTGCG torR 1759800 - 1759102 - | DNA-binding transcriptional regulator TorR torD 1760038 - 1760685 + | chaperone protein TorD TERM 2010 1760849 - 1760835 - f 82 -7.8 -4.56914 | opp_overlap 1760835, overlap 1760830 GTATTGAAATGAAAA CCGCAT TTT ACGCGG TTTTTTTCATTTTTA TERM 2011 1760835 - 1760849 + F 91 -5.6 -5.85011 | opp_overlap 1760835 1760830 GTATTGAAATGAAAA CCGCAT TTT ACGCGG TTTTTTTCATTTTTA TERM 2012 1761071 - 1761039 - g 71 -4.1 -4.99645 | overlap 1761044 ACGTGATAAATAAAA CACGATTTGTTGCTG AAG CAACACAAAAACGTG TTTGGGAAGCAGTTG purR 1760966 - 1761979 + | DNA-binding transcriptional repressor, hypoxanthine-binding TERM 2013 1762034 - 1762014 - f 91 -5.4 -5.83822 | opp_overlap 1762014 GAGATTCAAAAAAAA GCCATACT ATTAA AGTGTGGC TTTTTTTATTATTAA TERM 2014 1762014 - 1762034 + F 100 -7.6 -5.95946 | opp_overlap 1762014 GAGATTCAAAAAAAA GCCATACT ATTAA AGTGTGGC TTTTTTTATTATTAA tfoX2 1762470 - 1763057 + | DNA transformation protein TfoX2 (Sxy) TERM 2015 1763080 - 1763124 + T 78 -10.4 -2.63631 | TGTTTTAGATTCATT TTTATTATGTTGTATTCTAT AGCGC ATAGAATACAACATAATCAC TACTATCAGCCTTAA VF_1574 1763873 - 1763136 - | hypothetical protein VF_1575 1763981 - 1764283 + | O6-methylguanine-DNA methyltransferase ybaY 1764807 - 1764352 - | outer membrane lipoprotein tesB 1765088 - 1765951 + | acyl-CoA thioesterase II TERM 2016 1765972 - 1765994 + T 85 -12 -3.04231 | overlap 1765969 CGCATCTTTTCTATT GGTCAGGCTA TCG TTGCCTGACC TGCTTATTTGAATAT ybaO 1766481 - 1766014 - | DNA-binding transcriptional regulator TERM 2017 1766495 - 1766509 + H 77 -5.8 -4.65078 | ATAAAAACCTCACTG TAGAAA ATT TTTCTA TTTTATTACCAATAT TERM 2018 1767624 - 1767640 + G 71 -6.6 -4.07568 | opp_overlap 1767623 1767618 GATTTAACACCAACT TTAGCC CTATT GGCTAA TTTTGAGAAAACAGG VF_1579 1766601 - 1767665 + | cysteine synthase TERM 2019 1767727 - 1767745 + F 100 -13.2 -5.46657 | opp_overlap 1767727 GGTATTAACCGCAAA GCCATCGA TTA TCGATGGC TTTTTTATTACAATA TERM 2020 1767745 - 1767727 - f 95 -13.2 -3.67976 | opp_overlap 1767727 GGTATTAACCGCAAA GCCATCGA TTA TCGATGGC TTTTTTATTACAATA queC 1767795 - 1768478 + | queuosine biosynthesis protein QueC TERM 2021 1768507 - 1768530 + T 90 -8.1 -5.38326 | opp_overlap 1768507 TTTTAAAAATAAAAA GGCCACCAC GATTAA GTGATGGCC TTTTTATTTACTTAA TERM 2022 1768530 - 1768507 - T 100 -10.3 -5.61881 | opp_overlap 1768507 TTTTAAAAATAAAAA GGCCACCAC GATTAA GTGATGGCC TTTTTATTTACTTAA VF_1581 1771665 - 1768555 - | acriflavin resistance plasma membrane protein TERM 2023 1768763 - 1768710 - G 82 -6.2 -4.97158 | gap 1 CCATACCAAAGAAAA TAACCGTACCAACCGCTACTCGGCT TTCAT AGCC-AGCACCTGTTGATACAATTA ATGGAATAGCACCAG TERM 2024 1771634 - 1771620 - G 74 -6.4 -4.38313 | opp_overlap 1771620 ACAGCAAACTTAAAA CAATGG CTA CCACTG GTCTTTTTACTGAAA VF_1582 1772714 - 1771668 - | periplasmic component of efflux system TERM 2025 1773794 - 1773815 + H 100 -9.5 -5.65177 | opp_overlap 1773787 1773794 GTAAGAGATCGGAAA GCCAATTCA GAAA TGAGTTGGC TTTTTTTGTGCCTGT xthA 1774258 - 1775064 + | exonuclease III TERM 2026 1775073 - 1775094 + F 100 -11.6 -5.252 | CAAATAATATGTTTA GCCCTCAC CTATTT GTGAGGGC TTTTTTATCCCAATC grxB 1775139 - 1775789 + | glutaredoxin 2 TERM 2027 1775811 - 1775840 + T 73 -8.7 -3.31792 | opp_overlap 1775817, overlap 1775817 TCTATTTTTAACAAT AAAAAAGAGCACG TTAA TGTGCTCTTTTTC TTATCAAAATCATGA TERM 2028 1775817 - 1775834 + T 88 -7.7 -5.18726 | opp_overlap 1775817, overlap 1775811 TTTAACAATAAAAAA GAGCACG TTAA TGTGCTC TTTTTCTTATCAAAA TERM 2029 1775834 - 1775817 - T 93 -7 -5.64873 | opp_overlap 1775817 1775811 TTTAACAATAAAAAA GAGCAC GTTAAT GTGCTC TTTTTCTTATCAAAA hisM 1776798 - 1776121 - | histidine/lysine/arginine/ornithine transporter subunit hisQ 1777541 - 1776801 - | histidine/lysine/arginine/ornithine transporter subunit argT 1778444 - 1777668 - | lysine/arginine/ornithine transporter subunit hisP 1779288 - 1778518 - | histidine/lysine/arginine/ornithine transporter subunit VF_1589 1779904 - 1781412 + | hypothetical protein TERM 2030 1781440 - 1781462 + F 100 -9.2 -5.06414 | opp_overlap 1781426 ACCTATAATACTTAT GGGGTAAC CAAAAAT GTTACCCC TTTTTATTAAAAAAA TERM 2031 1783556 - 1783542 - g 80 -6.4 -4.66987 | TATACGGTAAGAAAA CTGGTA ATA CACCAG ATGGTCGTCAAGCAG pflB 1781699 - 1783975 + | pyruvate formate lyase I TERM 2032 1784001 - 1784021 + F 100 -11.1 -5.5074 | opp_overlap 1784001 ATTAAGTAGAATTGA GCCCTGCCA TTT TGGTGGGGC TTTTTTATTGCCTTA pflA 1784138 - 1784875 + | pyruvate formate lyase-activating enzyme 1 TERM 2033 1784906 - 1784922 + G 100 -12.3 -5.06414 | opp_overlap 1784906 TTTAAGCAACACAAA TGCCCGA TCT TCGGGCA TTTTTATTGGAAAAA TERM 2034 1784922 - 1784906 - g 100 -12.3 -4.2772 | opp_overlap 1784906 TTTAAGCAACACAAA TGCCCGA TCT TCGGGCA TTTTTATTGGAAAAA TERM 2035 1785892 - 1785916 + G 70 -2.9 -5.15167 | opp_overlap 1785892 1785895, overlap 1785895 TTTTACCATGAAGTA GAATCATGT GAAGAAA ACATGACTC TTTTTATTGATGGTG TERM 2036 1785973 - 1785963 - g 78 -4 -5.1971 | ATTAAAAATGAAAAA TGAT GTG ATCA CATTATGTGAAGCTA ycfD 1784905 - 1786089 + | hypothetical protein TERM 2037 1786125 - 1786101 - T 93 -7.2 -5.73339 | ATAAGTACAAAAAAA GCGCGATA TAAATTGCC TATCGCGC TTAAGCCTGTCACAG TERM 2038 1786130 - 1786142 + T 72 -9.1 -2.53995 | GCCTATCGCGCTTAA GCCTG TCA CAGGC TGAATTAAAATACAT TERM 2039 1786165 - 1786187 + T 100 -13.6 -5.12068 | opp_overlap 1786158 1786169 AAATACATTTTTTAA CCCATCATAA ATA TTATGATGGG TTTTTATTAAATGTC oppF 1787189 - 1786194 - | oligopeptide transporter ATP-binding protein OppF oppD 1788154 - 1787189 - | oligopeptide transporter ATP-binding component oppC 1789107 - 1788205 - | oligopeptide transport system permease protein OppC oppB 1790042 - 1789122 - | oligopeptide transporter permease TERM 2040 1789630 - 1789614 - G 71 -6.5 -4.19177 | AGGGGCCAATACAAA GGATGGC ATC ACCACCC CCACCATGGCGGTGG TERM 2041 1790003 - 1789991 - G 77 -7.7 -4.27192 | opp_overlap 1789990 AAATGGTGATCAAAA CCAAC ATT GTTGG AATTGCTTCAAGTAT TERM 2042 1790089 - 1790120 + r 100 -13.8 -5.4588 | overlap 1790090 TTAAAAGATGGATCT AGTCACTACACGCG ATCC TGCGTGTAGTGACA TTTTTTATAATTTTA TERM 2043 1790090 - 1790119 + r 100 -17.3 -3.85088 | overlap 1790089 TAAAAGATGGATCTA GTCACTACACGCG ATCC TGCGTGTAGTGAC ATTTTTTATAATTTT oppA 1791812 - 1790148 - | oligopeptide-binding protein OppA TERM 2044 1790908 - 1790924 + g 71 -5.1 -4.52873 | opp_overlap 1790906 1790908 AAGCTACCTACAACA GAAACTG AAT CAGGTTC TTCTTTTTGTAGACG TERM 2045 1794453 - 1794475 + G 77 -10.6 -2.91383 | opp_overlap 1794450 1794451, overlap 1794450 ACAGACGATAAAGGT GCGACTGCAT CTG ATTCAGTCGC TGTATCAGTAACCGT TERM 2046 1794780 - 1794802 + G 70 -8.4 -3.4072 | opp_overlap 1794780 1794782, overlap 1794784 GTTACTGTACTTAAA GATGCTGGTG ATC CACCAGTAAC TTGTGATAACGCATG TERM 2047 1794784 - 1794798 + G 72 -10 -2.61548 | opp_overlap 1794782 1794780, overlap 1794780 CTGTACTTAAAGATG CTGGTG ATC CACCAG TAACTTGTGATAACG VF_1598 1792428 - 1794965 + | exochitinase TERM 2048 1794988 - 1795015 + T 93 -8.5 -4.64861 | opp_overlap 1794966 1794988 ATTTAAAAATAAAAA GACCAAGCTCA CTTATC TGAACTTGGTC TTTCTTTTAAAACCG TERM 2049 1795015 - 1794988 - T 100 -10.7 -5.63236 | opp_overlap 1794988, overlap 1794966 ATTTAAAAATAAAAA GACCAAGCTCA CTTATC TGAACTTGGTC TTTCTTTTAAAACCG tdk 1795630 - 1795052 - | thymidine kinase TERM 2050 1795423 - 1795434 + g 72 -4.4 -4.67607 | ACTCTTTAATTGCGT CGAA TACA TTCG TTTCTTTATTAAACA TERM 2051 1795637 - 1795617 - G 81 -5.5 -5.16841 | opp_overlap 1795619 1795621, overlap 1795619 GCAGAGTAATAAAAA TACATTTGT GCC ACAAATGTG TCCTCTATTAAAGTT TERM 2052 1795635 - 1795619 - G 77 -8.1 -4.20491 | opp_overlap 1795619 1795621, overlap 1795617 AGAGTAATAAAAATA CATTTGT GCC ACAAATG TGTCCTCTATTAAAG TERM 2053 1795690 - 1795674 - R 100 -9.4 -5.4505 | opp_overlap 1795673 1795674 TTTGGTAATAAAAAA GGCTGG AAATA CCAGCC CTTTATATAAAACTG TERM 2054 1795674 - 1795690 + r 74 -9.4 -3.02202 | opp_overlap 1795674, overlap 1795673 TTTGGTAATAAAAAA GGCTGG AAATA CCAGCC CTTTATATAAAACTG cysS 1797097 - 1795712 - | cysteinyl-tRNA synthetase ppiB 1797246 - 1797743 + | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 2055 1797736 - 1797748 + F 87 -6.3 -5.41746 | opp_overlap 1797736 CAGGCACAACAATCA CAGAA TAA TTCTG TTTTTTTGCCAGCTT TERM 2056 1797755 - 1797778 + F 100 -14 -4.5442 | ATAATTCTGTTTTTT TGCCAGCTTT ATTC AAAGCTGGCA TTTTCTCATTACCAA lpxH 1797804 - 1798529 + | UDP-2,3-diacylglucosamine hydrolase VF_1603 1798643 - 1799845 + | GGDEF domain-containing protein ychJ 1799858 - 1800256 + | hypothetical protein TERM 2057 1800289 - 1800272 - T 100 -11.3 -6.08563 | opp_overlap 1800272 AAGACATAAAAAAAA CGAGAGC GCTT GCTCTCG TTTTTTATTTTCAAT TERM 2058 1800272 - 1800289 + T 100 -11.3 -5.80951 | opp_overlap 1800272 AAGACATAAAAAAAA CGAGAGC GCTT GCTCTCG TTTTTTATTTTCAAT VF_1605 1801742 - 1800318 - | hypothetical protein cls 1802048 - 1803502 + | cardiolipin synthetase TERM 2059 1803519 - 1803548 + T 100 -13.7 -5.32699 | opp_overlap 1803519 AACACATAAGAAAAA GCCAGTGACCT CTTTGCCA AGGTCACTGGC TTTTTTAATGTTTAC TERM 2060 1803548 - 1803519 - T 100 -14.4 -5.28561 | opp_overlap 1803519 AACACATAAGAAAAA GCCAGTGACCTC TTTGCC AAGGTCACTGGC TTTTTTAATGTTTAC folE 1804248 - 1803595 - | GTP cyclohydrolase I TERM 2061 1805259 - 1805271 + G 71 -6.3 -4.30978 | opp_overlap 1805258 TAGCCATTAAACCAG GCAAA CCT TTTGC TTTTGGTCAATTACC moeA 1804403 - 1805647 + | molybdopterin biosynthesis protein moeB 1805658 - 1806407 + | molybdopterin biosynthesis protein MoeB TERM 2062 1806432 - 1806458 + F 100 -9.6 -5.99154 | TATTTTCAATTTGAA GGCGATAAAA ACACATG TTTTATCGCC TTTTTTTATTTCCTA pstS2 1806665 - 1807486 + | phosphate-binding protein TERM 2063 1807499 - 1807522 + F 100 -9.6 -4.81249 | TAATTTCTACCCTAT TGCCTGACCT GCGA AGGTTGGGCA TTTTTCCATTTCGAA pstC2 1807562 - 1808488 + | phosphate ABC transporter, permease protein PstC pstA2 1808493 - 1809350 + | phosphate ABC transporter, permease protein PstA TERM 2064 1810011 - 1809994 - g 75 -2.7 -5.18561 | GAAACACTCAAAAAA GATTACA CCAT TGTTATC GTAACTCACTCAATG pstB2 1809415 - 1810164 + | phosphate transport ATP-binding protein PstB TERM 2065 1810203 - 1810220 + T 93 -8.4 -5.5208 | GCGATGGAAACTCTT GCCCCT CTAGTT AGGGGC TTTTTTATGTTATAA VF_1614 1811116 - 1810289 - | hypothetical protein VF_1615 1811345 - 1811977 + | hypothetical protein TERM 2066 1812069 - 1812027 - f 100 -10.8 -4.1899 | opp_overlap 1812032 1812037, overlap 1812030 TCATTCCATTTAAAA TATGAGTACACTTGTTTTAA TTA TTACAACAGGTGTACTCCTA TGAAAATACAATCTA TERM 2067 1812066 - 1812030 - f 86 -12.5 -2.81208 | opp_overlap 1812032 1812037, overlap 1812027 TTCCATTTAAAATAT GAGTACACTTGTTTTAA TTA TTACAACAGGTGTACTC CTATGAAAATACAAT TERM 2068 1812032 - 1812064 + F 83 -11.5 -2.62983 | opp_overlap 1812030 1812027, overlap 1812037 CCATTTAAAATATGA GTACACTTGTTTTAA TTA TTACAACAGGTGTAC TCCTATGAAAATACA VF_1616 1812069 - 1812698 + | hypothetical protein TERM 2069 1812766 - 1812795 + G 80 -10.9 -3.42503 | overlap 1812760 TAATCGAACTCGTTA TTGCGATTACTGT TGCG GCAGTAATTGCAA TTATCGCTATTCCAA VF_1617 1812723 - 1813118 + | hypothetical protein TERM 2070 1813291 - 1813312 + T 93 -11.7 -4.0802 | opp_overlap 1813291 CATTTATAAAAAAAA GGCTTATCA ACAA TGATAAGCC TTTCATTCTTACAGT TERM 2071 1813312 - 1813291 - T 100 -11.7 -5.96219 | opp_overlap 1813291 CATTTATAAAAAAAA GGCTTATCA ACAA TGATAAGCC TTTCATTCTTACAGT VF_1618 1814973 - 1813333 - | methyl-accepting chemotaxis protein torS 1818025 - 1815107 - | hybrid sensory histidine kinase in two-component regulatory system with TorR TERM 2072 1816638 - 1816651 + g 71 -6.7 -4.02424 | CTGTTTGCTTGTTCA GCAAG ATCC CTTGC TTTATCGTGGTTAAT torT 1818057 - 1819055 + | periplasmic sensory protein associated with the TorRS two-component regulatory system VF_1621 1819152 - 1819607 + | methylglyoxal synthase TERM 2073 1819616 - 1819648 + T 79 -9.3 -3.38118 | opp_overlap 1819621, overlap 1819621 CGTTTAGCTTAATAA AAAAATAGCCGCT ATTTTCG AGCGGCTATTTTA TTGTCCCTAAGTTAT TERM 2074 1819643 - 1819621 - T 100 -9.2 -5.80364 | opp_overlap 1819621 1819616 AGCTTAATAAAAAAA TAGCCGCT ATTTTCG AGCGGCTA TTTTATTGTCCCTAA TERM 2075 1819621 - 1819643 + T 100 -9.2 -4.79352 | opp_overlap 1819621, overlap 1819616 AGCTTAATAAAAAAA TAGCCGCT ATTTTCG AGCGGCTA TTTTATTGTCCCTAA helD 1821723 - 1819660 - | DNA helicase IV yccS 1821916 - 1824099 + | inner membrane protein TERM 2076 1824178 - 1824197 + F 75 -8.6 -3.35073 | opp_overlap 1824177 1824178 ACACTATTATTAAAG GGAGTTCA TATT TGGACTCC TTAATTACCAATAAT VF_1624 1824229 - 1824726 + | hypothetical protein TERM 2077 1824752 - 1824773 + T 79 -8.7 -3.81062 | opp_overlap 1824752, overlap 1824769 CGCAAACGTAAAAAA GCCCACTCA TTCC TGAATGGGC TTTCCAATTTTTGGT TERM 2078 1824773 - 1824752 - T 100 -10.9 -5.22039 | opp_overlap 1824752 1824769 CGCAAACGTAAAAAA GCCCACTCA TTCC TGAATGGGC TTTCCAATTTTTGGT TERM 2079 1824933 - 1824954 + T 100 -14.5 -4.56978 | opp_overlap 1824933 TACAAACGTAAAAAA GCCCGTTCA TTTC TGAACGGGC TTTCTTGTTTGGAGC TERM 2080 1824954 - 1824933 - T 100 -14.5 -5.24449 | opp_overlap 1824933 TACAAACGTAAAAAA GCCCGTTCA TTTC TGAACGGGC TTTCTTGTTTGGAGC TERM 2081 1825114 - 1825134 + T 79 -10.5 -2.89742 | overlap 1825117 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2082 1825117 - 1825131 + T 77 -8.6 -3.5947 | overlap 1825114 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2083 1825688 - 1825703 + T 89 -9 -4.33808 | opp_overlap 1825688 TCAAATATAAAAAAA GCGAAC CTAA GTTCGC TTTTCAATTCATTTA TERM 2084 1825703 - 1825688 - T 100 -9 -5.88197 | opp_overlap 1825688 TCAAATATAAAAAAA GCGAAC CTAA GTTCGC TTTTCAATTCATTTA pgsA 1826276 - 1825722 - | phosphatidylglycerophosphate synthetase uvrC 1828148 - 1826322 - | excinuclease ABC subunit C TERM 2085 1827974 - 1827985 + g 70 -3 -5.0133 | GATGAATATGGCTAA CTAA CGCC TTAG TTTTTTCCGAAGGTA TERM 2086 1828106 - 1828064 - G 76 -7.2 -4.15698 | gap 2, opp_overlap 1828061 1828064 1828066, overlap 1828061 TACCTACATAAATAA CGTCAGCCTCGGCGTTATAC ATTCG ATA-AACGCC-AGGCTGATG TGTTACAGATTTTAG gacA 1828792 - 1828148 - | response regulator TERM 2087 1828892 - 1828878 - R 73 -4.3 -4.84582 | AAAAAACAGATAAAA GCATA TTGAT TATGC GTTAGGCCGCAAAGT polB 1831314 - 1828969 - | DNA polymerase II TERM 2088 1829810 - 1829798 - G 83 -3.3 -5.55664 | CGATGATCAAAAAAA CGACA ACC TGACG AGCCTAGCACACCAT VF_1629 1832119 - 1831343 - | hypothetical protein TERM 2089 1831626 - 1831638 + g 85 -4.1 -5.58454 | TGAACTGCCATATCT TGGCT AGT AGCTA TTTTTTTAATATAAA TERM 2090 1832189 - 1832206 + r 74 -5.5 -4.67651 | opp_overlap 1832189 AAAAGCAATAAAAAA CCGGC CATTTAAA GCCGG TTTATTTTAAAATCT TERM 2091 1832206 - 1832189 - R 88 -6.2 -5.61689 | opp_overlap 1832189 AAAAGCAATAAAAAA CCGGCC ATTTAA AGCCGG TTTATTTTAAAATCT VF_1630 1833814 - 1832228 - | sodium:proton antiporter TERM 2092 1833838 - 1833824 - H 75 -8.6 -3.37796 | GTTCATGATCTACAA CAACCA GTC TGGTTG GAGATCTACTGCAGA TERM 2093 1834220 - 1834236 + G 100 -5.3 -5.9003 | opp_overlap 1834211 1834220, overlap 1834211 1834214 1834209 AATGGATATTATTAA TATTAAT ATC ATTAATA TTTTTTTATTCCTTT TERM 2094 1834600 - 1834590 - g 84 -2.4 -5.70761 | AAAACAAAACAAAAA CGCG CAC CTCG TCCTGCAAAATATAA hns 1834206 - 1834727 + | global DNA-binding transcriptional dual regulator H-NS TERM 2095 1834742 - 1834788 + T 100 -14.8 -3.44101 | opp_overlap 1834733 1834731 1834745 1834755, overlap 1834755 ATAATACTCTTTAAA GAGCATATAAAAAGACCACTTA CTC TAAGTGGTCTTTTTTTATTTTC ATTTTATTACATTTA TERM 2096 1834785 - 1834745 - T 87 -12.9 -2.61322 | opp_overlap 1834742 1834755, overlap 1834731 1834755 ATACTCTTTAAAGAG CATATAAAAAGACCACTTA CTC TAAGTGGTCTTTTTTTATT TTCATTTTATTACAT TERM 2097 1834775 - 1834755 - T 100 -12.7 -5.03405 | opp_overlap 1834742 1834755, overlap 1834745 AAGAGCATATAAAAA GACCACTTA CTC TAAGTGGTC TTTTTTTATTTTCAT TERM 2098 1834755 - 1834775 + T 100 -12.7 -6.11229 | opp_overlap 1834755 1834745, overlap 1834742 AAGAGCATATAAAAA GACCACTTA CTC TAAGTGGTC TTTTTTTATTTTCAT mipA 1835822 - 1835004 - | scaffolding protein for murein synthesizing machinery TERM 2099 1835891 - 1835859 - R 76 -10 -2.89564 | opp_overlap 1835867, overlap 1835867 TGTTTATTTTAGATA TAAAAAAAGCAGGC TAAGT GCCTGCTTTATTCA ATTTTAAATCGGATT TERM 2100 1835883 - 1835867 - R 100 -9.4 -5.76633 | opp_overlap 1835867, overlap 1835859 TTAGATATAAAAAAA GCAGGC TAAGT GCCTGC TTTATTCAATTTTAA TERM 2101 1835867 - 1835883 + r 93 -9.4 -4.32607 | opp_overlap 1835867 1835859 TTAGATATAAAAAAA GCAGGC TAAGT GCCTGC TTTATTCAATTTTAA fadR 1836747 - 1835905 - | fatty acid metabolism regulator TERM 2102 1836526 - 1836504 - G 77 -7.8 -4.21275 | opp_overlap 1836504 1836506 TTAATGTATCTAAAA TATGCAAACC TGA GGTTTCCATA TAATTGTTCACTTTT nhaB 1837194 - 1838786 + | sodium/proton antiporter TERM 2103 1838813 - 1838832 + F 88 -7.8 -4.96501 | opp_overlap 1838813, overlap 1838828 ACTTTTGATAGCAAA GGCTCTGT AGAT ACGGGGCC TTTATTTTTATAAGG dsbB 1838855 - 1839364 + | disulfide bond formation protein B TERM 2104 1839381 - 1839362 - T 79 -3.6 -5.4505 | opp_overlap 1839376, overlap 1839365 TTCTTCAATAAAAAA TAATAGCA ATAT TGCTAATA GTAAAAAGCCACCAC TERM 2105 1839378 - 1839365 - T 74 -5.3 -4.81306 | opp_overlap 1839376, overlap 1839362 TTCAATAAAAAATAA TAGCA ATAT TGCTA ATAGTAAAAAGCCAC TERM 2106 1839376 - 1839431 + T 93 -13.8 -3.18452 | gap 1, opp_overlap 1839365 1839362 1839389, overlap 1839389 ATAATAGCAATATTG CTAATAGT-AAAAAGCCACCACTAATT ACG AATTAGTGATGGCTTTTTTATTTTTAG TGCTTTATTTACCAC TERM 2107 1839417 - 1839389 - T 100 -15.5 -4.87626 | opp_overlap 1839376 1839389 TGCTAATAGTAAAAA GCCACCACTAATT ACG AATTAGTGATGGC TTTTTTATTTTTAGT TERM 2108 1839389 - 1839417 + T 100 -13.3 -5.95286 | opp_overlap 1839389, overlap 1839376 TGCTAATAGTAAAAA GCCACCACTAATT ACG AATTAGTGATGGC TTTTTTATTTTTAGT VF_1636 1840050 - 1839436 - | preprotein translocase subunit-like protein VF_1637 1840152 - 1840709 + | MshA-like protein TERM 2109 1840759 - 1840734 - f 87 -11.2 -3.28712 | CCTTTCCCCCTACAA TCCCACCTCC AATAAA AGAGGTGGGA TATGCAAGTAATACT dusC 1840761 - 1841708 + | tRNA-dihydrouridine synthase C TERM 2110 1841745 - 1841769 + T 100 -9.4 -4.67556 | TCCCCGAACCAATGG CCGAGTTTAT GAAAA GTAAACTCGG TTTTTACCATCTTGT VF_1639 1843223 - 1841751 - | GGDEF domain-containing protein TERM 2111 1843316 - 1843292 - R 74 -5.8 -4.57073 | opp_overlap 1843292 TATTTCTTCCAAAAA TGTCAGTTTT AACAG ACAACTGACA TTTTTATAGGAATCA TERM 2112 1843292 - 1843316 + r 81 -5.8 -4.84359 | opp_overlap 1843292 TATTTCTTCCAAAAA TGTCAGTTTT AACAG ACAACTGACA TTTTTATAGGAATCA VF_1640 1844184 - 1843348 - | hypothetical protein topB 1846219 - 1844249 - | DNA topoisomerase III TERM 2113 1845797 - 1845811 + g 79 -3.4 -5.46698 | ATCACTGATCAATAA GCGTTG AGT CGCCGC TTTTTTCGTTTTAGA TERM 2114 1846155 - 1846165 + g 73 -5.4 -4.58395 | GCGGCAATCGCTCTG CCAA GGC TTGG TTTTTCGGCAATAAA TERM 2115 1846224 - 1846199 - G 100 -10.6 -5.36441 | TCGTGACATAAAAAA TGCTGATGTT GTGAAT AACATCAGCA CTATACCTGTATGAA fadH 1848276 - 1846273 - | 2,4-dienoyl-CoA reductase, NADH and FMN-linked sppA 1848495 - 1850351 + | protease IV (signal peptide peptidase) TERM 2116 1850363 - 1850380 + F 100 -12.7 -4.55295 | opp_overlap 1850354 TTAAAAGCATGACGA GCCCGAC ACAT GTCGGGC TTTCTTTATGCCAAA ansA 1850444 - 1851457 + | cytoplasmic asparaginase I TERM 2117 1851482 - 1851508 + T 100 -11.7 -5.32944 | gap 1, opp_overlap 1851482 ACGTAATACAAAAAA GGCTTCCC-TGA ATTC TCATGGGAAGCC TTTTTTAATTCTAGA TERM 2118 1851508 - 1851482 - T 100 -11.7 -5.48063 | gap 1, opp_overlap 1851482 ACGTAATACAAAAAA GGCTTCCC-TGA ATTC TCATGGGAAGCC TTTTTTAATTCTAGA TERM 2119 1851522 - 1851542 + T 79 -4.1 -5.26875 | CCTTTTTTAATTCTA GATAATTAA CCG TAAATTATC TTTTTTCGTTCAAAA asd 1852653 - 1851538 - | aspartate-semialdehyde dehydrogenase VF_1646 1853278 - 1854714 + | malate-2-proton/lactate-sodium antiporter TERM 2120 1854742 - 1854763 + T 100 -13.1 -5.03994 | opp_overlap 1854742 CTCATTAAATAAAAA TGCCAGTGA TTGA TCACTGGCA TTTTTGTATCTAGCA TERM 2121 1854763 - 1854742 - T 100 -13.1 -5.33405 | opp_overlap 1854742 CTCATTAAATAAAAA TGCCAGTGA TTGA TCACTGGCA TTTTTGTATCTAGCA VF_1647 1856172 - 1854982 - | hypothetical protein yejK 1857371 - 1856313 - | nucleoid-associated protein NdpA VF_1649 1857410 - 1857637 + | hypothetical protein TERM 2122 1857644 - 1857630 - f 84 -6.4 -5.07011 | overlap 1857640 TAGATAAACCAAAAA CTCACT AAG AGCGAG AATTCACAGACCATG TERM 2123 1859002 - 1858989 - g 73 -6.7 -4.20696 | overlap 1858969 1858992 TTATCAACCTTAAAA CAGTC CCCT GACTG GGAAAAAACCATTGT yejM 1857657 - 1859465 + | hydrolase, inner membrane TERM 2124 1859497 - 1859519 + F 83 -4.9 -5.50499 | TCAAAATATTTCTAA TCCCTTC CTTAATTGC GAAGGGA TTTTTTTGCCTATAA TERM 2125 1859875 - 1859914 + F 90 -13.8 -3.07895 | opp_overlap 1859880 1859884, overlap 1859877 1859884 CGTCCGCTCCGCCAA TACAACGAAGGCATTGTC GAAA GACGATGCCTTTTTTGTA TCTGTTGAAAATGGA TERM 2126 1859877 - 1859912 + F 85 -12 -3.09749 | opp_overlap 1859880 1859884, overlap 1859875 1859884 TCCGCTCCGCCAATA CAACGAAGGCATTGTC GAAA GACGATGCCTTTTTTG TATCTGTTGAAAATG TERM 2127 1859905 - 1859884 - f 77 -8.7 -3.54382 | opp_overlap 1859877 1859875 1859884, overlap 1859880 CGCCAATACAACGAA GGCATTGTC GAAA GACGATGCC TTTTTTGTATCTGTT TERM 2128 1859884 - 1859905 + F 100 -10.9 -5.46276 | opp_overlap 1859884 1859880, overlap 1859877 1859875 CGCCAATACAACGAA GGCATTGTC GAAA GACGATGCC TTTTTTGTATCTGTT VF_1651 1860145 - 1860852 + | A-type carbonic anhydrase TERM 2129 1860898 - 1860862 - f 100 -11.7 -4.53685 | AAATGATAACGAAAA TGCCGTAAATCCACACA AAA TGCTCGAATTTACGGCA AACAGTACTTAATTT TERM 2130 1861063 - 1861084 + F 100 -12.3 -4.8048 | TCCGCCACTTTCTAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATACGCA TERM 2131 1861490 - 1861511 + F 100 -12.3 -4.86133 | TCCGCCACTTTCTAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATCTATA TERM 2132 1862516 - 1862528 + G 86 -7.7 -4.96848 | opp_overlap 1862514 ATTAGTAAACTTACA CCTGA GAA TCAGG TTTTTGTCTACGACA VF_1652 1861952 - 1863838 + | methyl-accepting chemotaxis protein TERM 2133 1863889 - 1863868 - T 90 -10.9 -3.78449 | opp_overlap 1863868, overlap 1863858 AATAAGATATTTAAA GCCCTAACA GAGA TGCTAGGGC TTTTTATATATGCGG TERM 2134 1863868 - 1863889 + T 95 -8.7 -5.03994 | opp_overlap 1863858 1863868 AATAAGATATTTAAA GCCCTAACA GAGA TGCTAGGGC TTTTTATATATGCGG VF_1653 1864724 - 1863909 - | hypothetical protein TERM 2135 1864805 - 1864794 - R 76 -4.4 -5.19251 | opp_overlap 1864794 GAACACCAACAAAAA GCAA TCGT TTGC TATTTTATTTCACAC yjgM 1865305 - 1864805 - | acetyltransferase TERM 2136 1866028 - 1865996 - g 79 -5.6 -4.99035 | gap 1, opp_overlap 1865996 1865995 1865998 TTAGTGATACAAAAA CACG-CGACCAACTC ACTG GATTTGGTCCTCGTG GTGTTACTCAGTTTT VF_1655 1865581 - 1867980 + | hypothetical protein VF_1656 1867982 - 1868863 + | hypothetical protein TERM 2137 1868878 - 1868899 + T 100 -7.3 -5.8187 | opp_overlap 1868878 ATAGAAAATAAAAAA GGTAGAGTT ATTA GGCTCTACC TTTTTTTATTGGATG TERM 2138 1868899 - 1868878 - T 93 -5.9 -5.8901 | opp_overlap 1868878 ATAGAAAATAAAAAA GGTAGAG TTATTAGG CTCTACC TTTTTTTATTGGATG VF_1657 1869764 - 1868925 - | oxidoreductase TERM 2139 1870593 - 1870624 + G 71 -3.9 -4.88222 | gap 1, opp_overlap 1870593 GATTAACGAAAGTCA TTGCCCAACTAT CCATTGAAA ATAGT-GGGCAA TTTTTAAATTTTGAT VF_1658 1869968 - 1870660 + | short chain dehydrogenase VF_1659 1870948 - 1870649 - | hypothetical protein VF_1660 1871388 - 1870948 - | hypothetical protein yeiW 1871511 - 1871762 + | hypothetical protein VF_1662 1872014 - 1871784 - | DNA-binding protein TERM 2140 1872099 - 1872129 + r 84 -6.3 -5.19261 | gap 1, opp_overlap 1872101, overlap 1872101 ATCACACCTATAAAA AATCCCTATAG-GA TTAC TCACTATAGGGATA TTTTTTAATCAATTT TERM 2141 1872127 - 1872101 - R 95 -8.9 -5.29782 | gap 1, opp_overlap 1872099 1872101 CACACCTATAAAAAA TCCCTATAG-GA TTAC TCACTATAGGGA TATTTTTTAATCAAT TERM 2142 1872101 - 1872127 + r 85 -8.9 -4.2131 | gap 1, opp_overlap 1872101, overlap 1872099 CACACCTATAAAAAA TCCCTATAG-GA TTAC TCACTATAGGGA TATTTTTTAATCAAT VF_1663 1873054 - 1872161 - | Tim44-like domain-contain protein TERM 2143 1872895 - 1872911 + g 82 -8.1 -4.62102 | TTGTTGTGTCTTGCT TACCAAT AGT ATTGGTA TTTTGCTGTTTTTGT TERM 2144 1873396 - 1873427 + G 75 -5.4 -4.76041 | gap 1, overlap 1873405 CAAACTGGCAAAAAG TATTGGTT-ATGTAC CGA GTACATTAGTCAATA TTTTTGGTAGCTATA VF_1664 1873277 - 1873876 + | TetR family transcriptional regulator VF_1665 1873906 - 1875774 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase menE 1877154 - 1875754 - | O-succinylbenzoic acid--CoA ligase menC 1878116 - 1877142 - | O-succinylbenzoate synthase TERM 2145 1878162 - 1878145 - R 100 -7.7 -5.92399 | opp_overlap 1878147 CAATAAAAGAAAAAA GAGACTC AAAG GAGCCTC TAATACTTAATTGAA menB 1879073 - 1878192 - | dihydroxynaphthoic acid synthetase yfbB 1879858 - 1879064 - | acyl-CoA thioester hydrolase YfbB TERM 2146 1879831 - 1879787 - G 83 -11 -3.65046 | gap 1, opp_overlap 1879788 1879799, overlap 1879788 1879799 CGTTGATCCTAACAA TCCATGTAAAAATACCACGCA AGGT TGAGTGGTATTTTT-CATGGT TTCCAATTGATTAGA TERM 2147 1879788 - 1879830 + g 100 -14.5 -3.69434 | gap 1, opp_overlap 1879787 1879788 1879799, overlap 1879799 GTTGATCCTAACAAT CCATGTAAAAATACCACGCA AGGT TGAGTGGTATTTTT-CATGG TTTCCAATTGATTAG TERM 2148 1879830 - 1879788 - G 93 -14.5 -2.78813 | gap 1, opp_overlap 1879788 1879799, overlap 1879787 1879799 GTTGATCCTAACAAT CCATGTAAAAATACCACGCA AGGT TGAGTGGTATTTTT-CATGG TTTCCAATTGATTAG TERM 2149 1879820 - 1879799 - G 83 -7.3 -4.68424 | opp_overlap 1879788 1879799, overlap 1879788 1879787 CAATCCATGTAAAAA TACCACGCA AGGT TGAGTGGTA TTTTTCATGGTTTCC TERM 2150 1879799 - 1879820 + g 85 -7.3 -4.84363 | opp_overlap 1879799 1879788 1879787, overlap 1879788 CAATCCATGTAAAAA TACCACGCA AGGT TGAGTGGTA TTTTTCATGGTTTCC menD 1881575 - 1879842 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase menF 1882894 - 1881572 - | isochorismate synthase 2 yfbQ 1883278 - 1884492 + | aminotransferase AlaT TERM 2151 1884543 - 1884512 - T 77 -5.9 -4.82901 | opp_overlap 1884519, overlap 1884514 1884519 TTCTTGTTATAAAAA TTCAAAAGCCTGC TCACTT GCAGGCTTTTTTA TACTCACTAATCTTC TERM 2152 1884536 - 1884519 - T 84 -8.4 -4.5115 | opp_overlap 1884519, overlap 1884514 1884512 TATAAAAATTCAAAA GCCTGC TCACTT GCAGGC TTTTTTATACTCACT TERM 2153 1884519 - 1884536 + T 90 -8.4 -5.31877 | opp_overlap 1884519 1884514 1884512 TATAAAAATTCAAAA GCCTGC TCACTT GCAGGC TTTTTTATACTCACT VF_1674 1886292 - 1884550 - | oligopeptide-binding protein OppA VF_2625 1886473 - 1886655 + | hypothetical protein VF_1675 1887208 - 1886675 - | pyrimidine reductase VF_1676 1887319 - 1887882 + | hypothetical protein yqhC 1888763 - 1887879 - | DNA-binding transcriptional regulator TERM 2154 1888926 - 1888910 - H 71 -6.6 -4.10744 | opp_overlap 1888909 1888910 TTATTGAAATAATAA GCTCTA GAAAA TAGAGC ATCCTTTTTGGAAGA yqhD 1888956 - 1890104 + | alcohol dehydrogenase, NAD(P)-dependent TERM 2155 1890111 - 1890149 + T 100 -11.2 -4.09864 | opp_overlap 1890114, overlap 1890114 1890116 GTAAAATAACCGTCT AAATACTGACTCAGAATA ATG TGTTCTGAGTCAGTATGA TTTTACAAACTAGCT TERM 2156 1890146 - 1890114 - T 100 -15.1 -3.59649 | opp_overlap 1890114 1890111 1890116 AAATAACCGTCTAAA TACTGACTCAGAATA ATG TGTTCTGAGTCAGTA TGATTTTACAAACTA TERM 2157 1890114 - 1890146 + T 100 -17.3 -3.08508 | opp_overlap 1890114, overlap 1890111 1890116 AAATAACCGTCTAAA TACTGACTCAGAATA ATG TGTTCTGAGTCAGTA TGATTTTACAAACTA TERM 2158 1890116 - 1890144 + T 100 -15.5 -3.09823 | opp_overlap 1890114, overlap 1890114 1890111 ATAACCGTCTAAATA CTGACTCAGAATA ATG TGTTCTGAGTCAG TATGATTTTACAAAC VF_1679 1891468 - 1890164 - | hypothetical protein TERM 2159 1891589 - 1891631 + r 87 -10.8 -3.51924 | opp_overlap 1891590 1891599, overlap 1891590 1891599 TTTGATTAATTTTAA ATAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTAA TTCTATCAATAAAGA TERM 2160 1891590 - 1891630 + r 93 -14.3 -2.7094 | opp_overlap 1891590 1891599, overlap 1891589 1891599 TTGATTAATTTTAAA TAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTA ATTCTATCAATAAAG TERM 2161 1891630 - 1891590 - R 100 -16.5 -3.67976 | opp_overlap 1891590 1891589 1891599, overlap 1891599 TTGATTAATTTTAAA TAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTA ATTCTATCAATAAAG TERM 2162 1891621 - 1891599 - R 100 -12.8 -6.23545 | opp_overlap 1891599 1891590 1891589, overlap 1891590 TTTAAATAAAAAAAA CCGCACCAAT TAA ATTGGTACGG TTTATTTTAATTCTA TERM 2163 1891599 - 1891621 + r 100 -10.6 -4.80487 | opp_overlap 1891590 1891599, overlap 1891590 1891589 TTTAAATAAAAAAAA CCGCACCAAT TAA ATTGGTACGG TTTATTTTAATTCTA VF_1680 1892519 - 1891647 - | drug/metabolite exporter family protein TERM 2164 1892568 - 1892543 - R 74 -3.4 -5.22312 | gap 2, opp_overlap 1892543 ATTCACATTAAAAAA GGGAAGCAGATC ATAC GA-CTG-TTCCC TTCATTTGCCAACTG VF_1681 1894062 - 1892614 - | coniferyl aldehyde dehydrogenase TERM 2165 1893084 - 1893096 + g 76 -3.3 -5.28942 | opp_overlap 1893071 1893083, overlap 1893079 1893083 1893085 CACACTCTATCGAAG TGAGC GTC GCTCC TTTTTCTTTAGCATC dgt 1894248 - 1895594 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 2166 1895645 - 1895602 - T 80 -9.2 -3.54902 | opp_overlap 1895602 1895604, overlap 1895598 CGATTTAAGAATCAA TACCAATTCAAATAAGTA TTAATATT TACTTACTTGGATTGGTA TATTACAAGCTATGA TERM 2167 1895602 - 1895645 + T 74 -9.2 -3.03771 | opp_overlap 1895598 1895602, overlap 1895604 CGATTTAAGAATCAA TACCAATTCAAATAAGTA TTAATATT TACTTACTTGGATTGGTA TATTACAAGCTATGA VF_1683 1896278 - 1895655 - | putative cytoplasmic protein VF_1684 1896292 - 1896855 + | rhomboid family integral membrane protein recR 1897429 - 1896827 - | recombination protein RecR TERM 2168 1897474 - 1897457 - R 93 -6.9 -5.61881 | opp_overlap 1897457 1897471 TCCTAAAAAGAAAAA GGCAGCC ACTG AGCCGCC TAATTATTCCAAGAC ybaB 1897866 - 1897531 - | hypothetical protein dnaX 1900098 - 1897972 - | DNA polymerase III subunits gamma and tau TERM 2169 1900176 - 1900149 - R 93 -7.8 -5.59357 | AGCACAGCAAAAAAA TGAGATCTTCCT TGAT AGAGAGATCTCA CGTAATTAACTGTGT apt 1900747 - 1900202 - | adenine phosphoribosyltransferase VF_2626 1900854 - 1901096 + | hypothetical protein VF_2627 1901118 - 1901273 + | hypothetical protein sprE 1902413 - 1901307 - | proteolytic adapter for RpoS degradation by ClpXP (RssB, ExpM) VF_1690 1902656 - 1903531 + | LysR family transcriptional regulator TERM 2170 1903567 - 1903550 - T 100 -11.3 -5.24531 | opp_overlap 1903550 ACTCTCTACAAAAAA GCCTGTG AAAT CACAGGC TTTTTTATTAAGCAA TERM 2171 1903550 - 1903567 + T 100 -11.3 -5.4505 | opp_overlap 1903550 ACTCTCTACAAAAAA GCCTGTG AAAT CACAGGC TTTTTTATTAAGCAA purF 1905101 - 1903587 - | amidophosphoribosyltransferase TERM 2172 1905149 - 1905130 - R 100 -13.6 -5.03145 | CAATTTGCTAAAAAA CTGGCGCT ATTT AGCGCCAG GAAGAAAACTTGATG cvpA 1905627 - 1905136 - | membrane protein required for colicin V production VF_1693 1906246 - 1905689 - | DedD protein folC 1907536 - 1906256 - | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 2173 1907517 - 1907484 - G 71 -7.6 -3.90922 | gap 2, opp_overlap 1907488 ATGCTTTCTAAATAA CGA-AGCCACA-CCGA TAAA TCAGATGTGGCTTTCG GAGAATCAAATGTTG accD 1908521 - 1907637 - | acetyl-CoA carboxylase subunit beta VF_2628 1908681 - 1908508 - | hypothetical protein truA 1909462 - 1908674 - | tRNA pseudouridine synthase A TERM 2174 1909506 - 1909527 + r 73 -4.3 -4.94672 | opp_overlap 1909506, overlap 1909500 ATCATTATAAAAAAA GGCGGAG CTCACTGC CACCGCC TTTTTAATATTGTTT TERM 2175 1909527 - 1909506 - R 88 -5.8 -5.67967 | gap 1, opp_overlap 1909500 1909506 ATCATTATAAAAAAA GGCGG-AGC TCACT GCCACCGCC TTTTTAATATTGTTT VF_1697 1913670 - 1909549 - | latent nuclear antigen TERM 2176 1913777 - 1913806 + r 81 -10.9 -2.76492 | opp_overlap 1913782, overlap 1913782 GTGCTTTATGGAAGA AAAAAGCCTTAGT TTTC ACTAAGGCTTTTA ATTTAAAGTAAATAA TERM 2177 1913782 - 1913801 + r 100 -10.8 -4.55798 | opp_overlap 1913782, overlap 1913777 TTATGGAAGAAAAAA GCCTTAGT TTTC ACTAAGGC TTTTAATTTAAAGTA TERM 2178 1913801 - 1913782 - R 100 -10.8 -5.4833 | opp_overlap 1913782 1913777 TTATGGAAGAAAAAA GCCTTAGT TTTC ACTAAGGC TTTTAATTTAAAGTA usg 1914874 - 1913861 - | aspartate-semialdehyde dehydrogenase TERM 2179 1914298 - 1914310 + g 74 -6.3 -4.41114 | AGTTAAACGCAATTT GCTTA TCG TAAGC TTTGTTCTCTGCTGG pdxB 1916004 - 1914874 - | erythronate-4-phosphate dehydrogenase TERM 2180 1915532 - 1915554 + g 83 -9.9 -3.94404 | opp_overlap 1915531 1915532 1915534 TCCAATGCTACGAAT GAGCGAGAG TCGCC CTCTTGCTC TTTAATTGGGTCATT TERM 2181 1916110 - 1916134 + r 80 -7.1 -4.56802 | opp_overlap 1916111, overlap 1916103 1916111 AATAGGTATAAAAAA ACCCAGTCAAT TTA AGTGACTGGGC TTTTACTATTTGTTT TERM 2182 1916111 - 1916133 + r 83 -10.6 -3.31641 | opp_overlap 1916111, overlap 1916110 1916103 ATAGGTATAAAAAAA CCCAGTCAAT TTA AGTGACTGGG CTTTTACTATTTGTT TERM 2183 1916133 - 1916111 - R 100 -10.6 -5.65177 | opp_overlap 1916110 1916103 1916111 ATAGGTATAAAAAAA CCCAGTCAAT TTA AGTGACTGGG CTTTTACTATTTGTT fabB 1917376 - 1916165 - | 3-oxoacyl-(acyl-carrier-protein)-synthase TERM 2184 1916712 - 1916731 + g 74 -4.3 -4.8667 | AAACCATCGCGGTCT GCATCAT AAGTAC GTGATGC TTTTTCTGGAGTATC TERM 2185 1918316 - 1918306 - g 70 -3.2 -4.99947 | CTCAACCAAAGAAAA CATC ACT GACG TTGCTATTATCGGGG TERM 2186 1918334 - 1918363 + G 70 -8.7 -3.35073 | gap 1, overlap 1918334 GCTATTATCGGGGGA GGT-GTTGCTAGTG CTG CATTAGCGACAACC TTAATTAGACGTGGT mnmC 1917497 - 1919539 + | 5-methylaminomethyl-2-thiouridine methyltransferase TERM 2187 1919584 - 1919637 + T 71 -7.5 -3.53091 | gap 1, overlap 1919570 GCTAGCTCCCTTTCT GGTTTCAGGGG-GCTAGTTGTAAG CGATGAA CTCACAACAAACTCCCCTGAATCC TTTAAGCGAAGCGAT mltB 1920645 - 1919668 - | membrane-bound lytic murein transglycosylase B TERM 2188 1920340 - 1920351 + g 86 -4.4 -5.38047 | opp_overlap 1920340 ACCAATTCGATTTAA CACT TTGT AGTG TTTTTTATATAAATC ycgL 1920932 - 1920672 - | hypothetical protein minC 1921117 - 1921782 + | septum formation inhibitor minD 1921808 - 1922620 + | membrane ATPase of the MinC-MinD-MinE system minE 1922623 - 1922886 + | cell division topological specificity factor MinE TERM 2189 1922920 - 1922937 + T 100 -9.9 -6.20267 | opp_overlap 1922920 AACGTGCATTAAAAA GGTGACT CATG AGTCACC TTTTTTTATTTTTGA TERM 2190 1922937 - 1922920 - T 100 -9.9 -4.73388 | opp_overlap 1922920 AACGTGCATTAAAAA GGTGACT CATG AGTCACC TTTTTTTATTTTTGA rnd 1924078 - 1922957 - | ribonuclease D TERM 2191 1923286 - 1923313 + g 73 -8.6 -3.72576 | GTTGAACTTCTCTTG GATCAAATTCTT CTTT AAGCATTTGATC TTTACTACGAAGCCC TERM 2192 1924102 - 1924142 + r 89 -13.6 -2.91383 | opp_overlap 1924107, overlap 1924104 1924107 CTTAATAGATGCCAA GGCAAGATAGCTTAATTT CAGTA AAACTAAGCTATCTTGTC TCTATAAATAAAAAT TERM 2193 1924104 - 1924140 + r 87 -12.6 -3.0094 | opp_overlap 1924107, overlap 1924102 1924107 TAATAGATGCCAAGG CAAGATAGCTTAATTT CAGTA AAACTAAGCTATCTTG TCTCTATAAATAAAA TERM 2194 1924107 - 1924137 + r 77 -8.5 -3.64912 | opp_overlap 1924107, overlap 1924104 1924102 TAGATGCCAAGGCAA GATAGCTTAATTT CAGTA AAACTAAGCTATC TTGTCTCTATAAATA TERM 2195 1924137 - 1924107 - R 87 -11.4 -3.1875 | opp_overlap 1924107 1924104 1924102 TAGATGCCAAGGCAA GATAGCTTAATTTC AGT AAAACTAAGCTATC TTGTCTCTATAAATA TERM 2196 1924182 - 1924157 - R 100 -12 -5.38054 | opp_overlap 1924154 1924152 1924157 1924160 CTCTATAAATAAAAA TAATGCCAGC GATTAG GCTGGCATTA TCGTATTTCTATATT TERM 2197 1924157 - 1924182 + r 84 -12 -2.94168 | opp_overlap 1924157, overlap 1924154 1924152 1924160 CTCTATAAATAAAAA TAATGCCAGC GATTAG GCTGGCATTA TCGTATTTCTATATT TERM 2198 1924160 - 1924179 + r 80 -9.3 -3.59627 | opp_overlap 1924157, overlap 1924157 1924154 1924152 TATAAATAAAAATAA TGCCAGC GATTAG GCTGGCA TTATCGTATTTCTAT fadD 1925889 - 1924207 - | long-chain-fatty-acid--CoA ligase TERM 2199 1925947 - 1925960 + r 71 -5.3 -4.50976 | opp_overlap 1925947 AATAACTCTATGACA GTGAT CACT ATCAC TTTTGTGGTGTAGAC VF_1709 1926944 - 1926075 - | hydrolase TERM 2200 1926721 - 1926705 - G 82 -3.7 -5.3671 | overlap 1926707 AATATAATCAAAAAA GTGATAA AAA TTATCCC CACCTTTATGAGAGG VF_1710 1927502 - 1926951 - | outer membrane protein Slp precursor VF_1711 1927873 - 1927574 - | hypothetical protein yeaZ 1928634 - 1927933 - | peptidase yoaA 1930600 - 1928642 - | hypothetical protein TERM 2201 1930020 - 1930030 + g 72 -3.2 -5.01732 | ACAACCACAACATCC GCAT CAA GTGC TTTTTTACGCGCCTT purU 1930975 - 1931670 + | formyltetrahydrofolate deformylase TERM 2202 1931707 - 1931687 - T 100 -15.5 -4.58585 | opp_overlap 1931687 GACTGAAATAAGAAA CGGCGATCA TTA TGATCGCCG TTTTTATTTTTAATT TERM 2203 1931687 - 1931707 + T 100 -15.5 -5.67529 | opp_overlap 1931687 GACTGAAATAAGAAA CGGCGATCA TTA TGATCGCCG TTTTTATTTTTAATT TERM 2204 1931737 - 1931755 + T 73 -7.5 -3.73097 | TCATTGTTATTGAGC CGCAATA AACTC TATTGCG TATTTATTAAATTCT VF_1715 1932525 - 1931728 - | tetranactin resistance protein VF_1716 1933505 - 1932690 - | AraC family transcriptional regulator VF_1717 1933564 - 1934457 + | drug/metabolite exporter family protein TERM 2205 1934490 - 1934515 + T 73 -9.1 -2.85242 | opp_overlap 1934488 1934490, overlap 1934488 AATTATCAAAGAATA TGCACCTCT AACTATAA AGAGGTGCA TCACTTTTATTCAGT TERM 2206 1934515 - 1934490 - T 80 -9.1 -3.60925 | opp_overlap 1934490 1934488, overlap 1934488 AATTATCAAAGAATA TGCACCTCT AACTATAA AGAGGTGCA TCACTTTTATTCAGT malY 1935694 - 1934522 - | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon TERM 2207 1935764 - 1935744 - R 100 -11.2 -5.77734 | AAACAAAAAGAAAAA GCGGAGTT AAATA AACTCCGC AATGAATACCAACCT malX 1937394 - 1935817 - | bifunctional maltose and glucose-specific PTS system components IICB TERM 2208 1938616 - 1938606 - g 71 -6.8 -4.11938 | CAAATCAATGATAAA GGCA GTG TGCC TCAAAGTTTAATCTT malI 1937643 - 1938665 + | DNA-binding transcriptional repressor MalI VF_2629 1938784 - 1938942 + | hypothetical protein TERM 2209 1938978 - 1938956 - T 89 -6.3 -5.73978 | opp_overlap 1938954 1938956 AGCAGAAATAAAAAA GCGAAGC TGATGATGG GCTTCGC TCTTGTTTAAAAATA TERM 2210 1938956 - 1938978 + T 73 -8.4 -3.55202 | opp_overlap 1938956, overlap 1938954 AGCAGAAATAAAAAA GCGAAGCTGA TGA TGGGCTTCGC TCTTGTTTAAAAATA metE 1941330 - 1939006 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 2211 1940897 - 1940886 - G 72 -4.4 -4.74801 | CAATCTCATCAAAAA GTTG TGAC CAAC TGACATTAAATTTAT metR 1941551 - 1942462 + | DNA-binding transcriptional activator, homocysteine-binding VF_2630 1942643 - 1942449 - | hypothetical protein VF_1723 1943418 - 1942711 - | hypothetical protein TERM 2212 1943121 - 1943108 - G 70 -3.1 -4.84642 | overlap 1943109 GCTAAATTAACAAAA CTTGC AGCA GCAAA ACCATTGGCTAATGC TERM 2213 1944494 - 1944508 + G 71 -5 -4.49756 | overlap 1944496 CGATTCTTCCCTTCT TACCTA TCG TAGGTG TTTTCCTGTTTAACG TERM 2214 1944658 - 1944632 - g 82 -3.8 -5.47399 | opp_overlap 1944640, overlap 1944640 TGAACGGTAAAAAAA CATTAGAAGATT TAG AATCTTGTTATG AAGGTATGGCTGATG dcuC 1943749 - 1945119 + | C4-dicarboxylate transporter DcuC TERM 2215 1945171 - 1945147 - f 91 -12.2 -3.72695 | opp_overlap 1945147 ACGTTTCTTATTAAA CGCCAGTTGC TTAAT ACAACTGGCG TTTTTGTTCCATAGT TERM 2216 1945147 - 1945171 + F 100 -11.5 -5.11063 | opp_overlap 1945147 ACGTTTCTTATTAAA CGCCAGTTG CTTAATA CAACTGGCG TTTTTGTTCCATAGT TERM 2217 1946178 - 1946189 + G 75 -3 -5.26875 | opp_overlap 1946178 TAAAGAAAAAATATA TACA CTTT TGTA TTTTTTAGTTGAAAA VF_1725 1945318 - 1946850 + | secretory tripeptidyl aminopeptidase TERM 2218 1947596 - 1947584 - g 79 -3.3 -5.40625 | ACATCAGATAAAAAA CTTCG CCA CGATG ACGCCTACACGCCAA TERM 2219 1948461 - 1948435 - g 71 -6 -4.21194 | overlap 1948436 TCGCATCATTCAAAA CCGTTCAAAA GAATCCA TTTTGAACGA GTTAGAAGAAATTCG TERM 2220 1948503 - 1948484 - g 73 -7.9 -3.88583 | opp_overlap 1948483 GAAATTCGCGACAAA GTACCTG GATTTA CAGGTAC GATTTCAGATCTTGG ygiQ 1947242 - 1949611 + | hypothetical protein TERM 2221 1949676 - 1949637 - T 81 -9.7 -3.46936 | gap 2, opp_overlap 1949645, overlap 1949645 AAATCGTAGTAAATA TAA-AAAAAGCGAACC-CA ATAA TGAGGTTCGCTTTTTATTA TCTCAAATAATAATC TERM 2222 1949645 - 1949667 + T 95 -8.5 -5.24796 | gap 1, opp_overlap 1949637 1949645 GTAAATATAAAAAAA GCGAACC-CA ATAA TGAGGTTCGC TTTTTATTATCTCAA TERM 2223 1949667 - 1949645 - T 100 -8.5 -5.88197 | gap 1, opp_overlap 1949645, overlap 1949637 GTAAATATAAAAAAA GCGAACC-CA ATAA TGAGGTTCGC TTTTTATTATCTCAA tyrS 1951023 - 1949743 - | tyrosyl-tRNA synthetase VF_1728 1951301 - 1952071 + | hypothetical protein TERM 2224 1952083 - 1952117 + T 87 -10.2 -3.83409 | opp_overlap 1952087, overlap 1952087 ATAGAATAAATACTA AAAAGAGCAATAAGAT TTA ATCTTATTGCTCTTCC TTTCATACTCTCTCA TERM 2225 1952113 - 1952087 - T 100 -15.4 -4.97461 | opp_overlap 1952087 1952083 AATAAATACTAAAAA GAGCAATAAGAT TTA ATCTTATTGCTC TTCCTTTCATACTCT TERM 2226 1952087 - 1952113 + T 100 -15.4 -3.58564 | opp_overlap 1952087, overlap 1952083 AATAAATACTAAAAA GAGCAATAAGAT TTA ATCTTATTGCTC TTCCTTTCATACTCT VF_2631 1952226 - 1952137 - | hypothetical protein TERM 2227 1952605 - 1952615 + G 80 -8.2 -4.31397 | overlap 1952597 CGGATTACGATGCTG GCCG TAT CGGC TTATTTTATAGCAAT VF_1729 1952421 - 1953002 + | hypothetical protein TERM 2228 1953066 - 1953023 - f 78 -6.9 -4.2828 | overlap 1953027 1953029 CCTTATTTATGAAAA GAAAGATTAGGCATTTTCA AAACAG TGAAAATGCCTAAAATTAC AACACTTAATCATTA TERM 2229 1953062 - 1953027 - f 80 -6.3 -4.7261 | overlap 1953023 1953029 ATTTATGAAAAGAAA GATTAGGCATTTTCA AAACAG TGAAAATGCCTAAAA TTACAACACTTAATC TERM 2230 1953060 - 1953029 - f 100 -13.3 -3.97149 | overlap 1953027 1953023 TTATGAAAAGAAAGA TTAGGCATTTTCA AAACAG TGAAAATGCCTAA AATTACAACACTTAA VF_1730 1953374 - 1954840 + | sodium/proline symporter VF_2632 1954842 - 1954937 + | hypothetical protein TERM 2231 1955000 - 1954983 - f 82 -9.9 -3.66921 | opp_overlap 1954983 AATGCTAACCTTAAA GCAGATC TTCG GATCTGC TTTTTTATACCGTTC TERM 2232 1954983 - 1955000 + F 100 -9.9 -5.27923 | opp_overlap 1954983 AATGCTAACCTTAAA GCAGATC TTCG GATCTGC TTTTTTATACCGTTC TERM 2233 1955162 - 1955144 - g 90 -9.6 -4.3623 | overlap 1955139 ATATTAAAAAGCAAA CCTGAAGC GAT GCTTCAAG CCTCACCTAAAGGCA VF_1731 1955033 - 1955662 + | stringent starvation protein A TERM 2234 1955685 - 1955668 - T 100 -9.1 -6.23317 | opp_overlap 1955668 ACAAAAATAAAAAAA GGAGACC AATT GGCCTCC TTTTTTATTCTTTCA TERM 2235 1955668 - 1955685 + T 93 -6.9 -5.72254 | opp_overlap 1955668 ACAAAAATAAAAAAA GGAGACC AATT GGCCTCC TTTTTTATTCTTTCA ptsG 1957136 - 1955709 - | glucose-specific PTS system IIBC components TERM 2236 1957043 - 1957029 - G 71 -6.4 -4.14598 | TGGAAGGAAACTAAA GTTGGC TGC ACCAAC CCCTAAAAGAATACC TERM 2237 1957442 - 1957425 - R 72 -2.8 -5.25735 | TGAAAAAATCAAAAA CTAAAA TGTTAT TTTTAG CAACAAAAATAGATA TERM 2238 1957555 - 1957540 - R 100 -6.8 -6.55664 | opp_overlap 1957540 TAAAATAAAAAAAAA GGAGAC CTAA GCCTCC TTTATCGATTACTTT ycfH 1958356 - 1957586 - | metallodependent hydrolase holB 1959152 - 1958346 - | DNA polymerase III, delta prime subunit TERM 2239 1958777 - 1958791 + g 78 -7.2 -4.41348 | overlap 1958773 TAGACTGCATTGATA CTGAAA GGT TTTCAG TTTCTTTAAGCCAGA tmk 1959953 - 1959321 - | thymidylate kinase yceG 1960861 - 1959956 - | aminodeoxychorismate lyase pabC 1961726 - 1960920 - | 4-amino-4-deoxychorismate lyase TERM 2240 1961787 - 1961761 - R 100 -18.2 -5.48514 | opp_overlap 1961761 ACTAATAAATAAAAA GGCGGTTTGATA TAA TATCAAACCGCC TTTAAAGTGTAACTG TERM 2241 1961761 - 1961787 + r 100 -18.2 -3.64103 | opp_overlap 1961761 ACTAATAAATAAAAA GGCGGTTTGATA TAA TATCAAACCGCC TTTAAAGTGTAACTG fabF 1963083 - 1961839 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2242 1962772 - 1962793 + g 93 -9.5 -4.68384 | gap 1, opp_overlap 1962772 1962771 AATACCTGAACCAAT TGCTGCACCG ATA CGGTG-AGCA TTTTCTTCAGTAACT TERM 2243 1962793 - 1962772 - G 70 -9.5 -2.62018 | gap 1, opp_overlap 1962772, overlap 1962771 AATACCTGAACCAAT TGCTGCACCG ATA CGGTG-AGCA TTTTCTTCAGTAACT TERM 2244 1963137 - 1963168 + r 75 -8 -3.7456 | gap 1, opp_overlap 1963139 1963141 1963157, overlap 1963135 1963138 TTTGTTGCGTATAAA AACTC-AGGCGGTCA AGA TGACCGCCTGGAGGG TATTTCTTACTGTGC TERM 2245 1963138 - 1963167 + r 83 -11.5 -2.84013 | gap 1, opp_overlap 1963139 1963141 1963157, overlap 1963137 1963135 TTGTTGCGTATAAAA ACTC-AGGCGGTCA AGA TGACCGCCTGGAGG GTATTTCTTACTGTG TERM 2246 1963166 - 1963139 - R 100 -15 -4.82901 | gap 1, opp_overlap 1963138 1963137 1963135, overlap 1963141 1963157 TGTTGCGTATAAAAA CTC-AGGCGGTCA AGA TGACCGCCTGGAG GGTATTTCTTACTGT TERM 2247 1963163 - 1963141 - R 100 -17.8 -2.6933 | opp_overlap 1963138 1963137 1963135, overlap 1963139 1963157 TTGCGTATAAAAACT CAGGCGGTCA AGA TGACCGCCTG GAGGGTATTTCTTAC acpP 1963408 - 1963175 - | acyl carrier protein TERM 2248 1963504 - 1963518 + r 70 -4.2 -4.75404 | opp_overlap 1963504 1963505, overlap 1963505 ACATTGCTGGTCAAA CCACGA TTT TCGTGA TTTTTAGTGCAATTT fabG 1964315 - 1963578 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2249 1963799 - 1963768 - G 82 -8 -4.63218 | opp_overlap 1963789, overlap 1963770 TCTGTTTCAATAAAA CCTGGTGCAACAGT ATTT ACTGTTACGCCACG TGAAGCAACTTCACG fabD 1965246 - 1964332 - | malonyl-CoA:(acyl carrier protein) S-malonyltransferase fabH 1966276 - 1965323 - | 3-oxoacyl-(acyl carrier protein) synthase III plsX 1967307 - 1966282 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 2250 1967246 - 1967227 - G 72 -9.3 -3.33261 | opp_overlap 1967224 TGGGAATTGTGACAA TGCCTGC ACGGCG GCAGGCA CTGTAACTTGGGGAC rpmF 1967488 - 1967318 - | 50S ribosomal protein L32 yceD 1968026 - 1967505 - | hypothetical protein yceF 1968161 - 1968742 + | hypothetical protein TERM 2251 1968754 - 1968779 + T 85 -10.6 -3.39936 | opp_overlap 1968754 GTAATTAATAAAAAA GCGATAAGTA ACAATC TACTTATCGC TTCTAGCATTTCAAT TERM 2252 1968779 - 1968754 - T 100 -11.3 -5.5604 | opp_overlap 1968754 GTAATTAATAAAAAA GCGATAAGTAA CAAT CTACTTATCGC TTCTAGCATTTCAAT rluC 1969769 - 1968822 - | 23S rRNA pseudouridylate synthase rne 1970213 - 1973197 + | hypothetical protein TERM 2253 1973271 - 1973238 - f 100 -9.7 -4.85618 | opp_overlap 1973242, overlap 1973242 AAATAACCAATAAAA TTAAGCAAGTTACGT TTCG ACGTAACTTGCTTTT TTTATATCTAATTCC TERM 2254 1973242 - 1973267 + F 100 -14.9 -5.76633 | opp_overlap 1973242 1973238 AACCAATAAAATTAA GCAAGTTACGT TTCG ACGTAACTTGC TTTTTTTATATCTAA TERM 2255 1973267 - 1973242 - f 100 -14.9 -3.84772 | opp_overlap 1973242, overlap 1973238 AACCAATAAAATTAA GCAAGTTACGT TTCG ACGTAACTTGC TTTTTTTATATCTAA VF_1749 1973374 - 1974921 + | sulfate transporter TERM 2256 1974961 - 1974985 + F 93 -7.2 -5.47159 | gap 1, opp_overlap 1974961 GATAGACTTTAAAAA TCCCGATATGG TTCT CC-TGTCGGGA TTTTTTATATTCACC TERM 2257 1974985 - 1974961 - f 72 -5 -4.65838 | gap 1, opp_overlap 1974961 GATAGACTTTAAAAA TCCCGATATGG TTCT CC-TGTCGGGA TTTTTTATATTCACC TERM 2258 1975099 - 1975081 - g 75 -2.5 -5.27769 | gap 1, overlap 1975084 AGAAAAAATTAAAAA CA-ACGTT GATA AACGTGTG GCCGAGGCTCAAGAA btuR 1975022 - 1975627 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2259 1975670 - 1975643 - T 93 -7.1 -5.45802 | gap 1, opp_overlap 1975643 TGTCTAAAACAAAAA TGGCCTACAATC TTAAT GAT-GCAGGCCA TTTCTTTATATGATG asmA 1977834 - 1975699 - | assembly protein TERM 2260 1977970 - 1977991 + r 93 -10.1 -4.1196 | opp_overlap 1977971, overlap 1977971 TATGAGACAAAAAAA AGGCCGACA TAAT TGTCGGCCC TTTTAAAGATAAATT TERM 2261 1977990 - 1977971 - R 100 -13.6 -6.0427 | opp_overlap 1977971 1977970 ATGAGACAAAAAAAA GGCCGACA TAAT TGTCGGCC CTTTTAAAGATAAAT TERM 2262 1977971 - 1977990 + r 90 -13.6 -3.06694 | opp_overlap 1977971, overlap 1977970 ATGAGACAAAAAAAA GGCCGACA TAAT TGTCGGCC CTTTTAAAGATAAAT TERM 2263 1978007 - 1978031 + r 74 -9.4 -3.11604 | opp_overlap 1978005 1978007, overlap 1978005 1978003 1978001 TTTTAAAGATAAATT TCTTACGCTT TTAAT AAGCGTGAGA TATGTGCTTTTAGTA udk 1978656 - 1978009 - | uridine kinase mrp 1979828 - 1978761 - | antiporter inner membrane protein TERM 2264 1981398 - 1981377 - g 73 -6.7 -4.16033 | gap 1, opp_overlap 1981377 1981376 GGGAAAGAACAAGAA CTACAAGAAG TGT CTTCT-GTAG GTATTAACTTGTTCC metG 1979961 - 1982021 + | methionyl-tRNA synthetase TERM 2265 1982088 - 1982127 + T 100 -12.4 -4.35461 | opp_overlap 1982088 1982098, overlap 1982098 GATTGGTATAACTTA CAAACAAAAATAGAGACC AAAT GGTCTCTATTTTTTTATG TTTTAATAATATTAC TERM 2266 1982127 - 1982088 - T 86 -12.4 -2.59748 | opp_overlap 1982088 1982098, overlap 1982098 GATTGGTATAACTTA CAAACAAAAATAGAGACC AAAT GGTCTCTATTTTTTTATG TTTTAATAATATTAC TERM 2267 1982117 - 1982098 - T 100 -10.8 -5.38958 | opp_overlap 1982098 1982088, overlap 1982088 ACTTACAAACAAAAA TAGAGACC AAAT GGTCTCTA TTTTTTTATGTTTTA TERM 2268 1982098 - 1982117 + T 100 -10.8 -5.9362 | opp_overlap 1982088 1982098, overlap 1982088 ACTTACAAACAAAAA TAGAGACC AAAT GGTCTCTA TTTTTTTATGTTTTA pyrF 1982850 - 1982146 - | orotidine 5'-phosphate decarboxylase TERM 2269 1982938 - 1982956 + r 73 -8.8 -3.28745 | opp_overlap 1982938 TTACATTCAAAAAAA GAGGCACT CAG AGCGCCTC TTCAATTATTCACCA TERM 2270 1982956 - 1982938 - R 100 -11 -5.50499 | opp_overlap 1982938 TTACATTCAAAAAAA GAGGCACT CAG AGCGCCTC TTCAATTATTCACCA yciM 1984131 - 1982962 - | hypothetical protein TERM 2271 1984030 - 1984007 - G 83 -11 -3.77177 | opp_overlap 1984007 1984005 AGCAATAGATTCAAA CCCGCCACGT ATTG ACGTGACAGG TGATTTGTTTCTTTT VF_1757 1984405 - 1984139 - | hypothetical protein TERM 2272 1984552 - 1984504 - R 100 -15 -4.22346 | gap 1, opp_overlap 1984518, overlap 1984508 1984518 TAAATGCATTGAAAA TGAACATAAAAAAACGGCATACT CAAA AGTATGCCGTTTTTGTATGC-CA ATTAGCATTAGCTAT TERM 2273 1984549 - 1984508 - R 100 -19.1 -3.69605 | opp_overlap 1984518, overlap 1984504 1984518 TGCATTGAAAATGAA CATAAAAAAACGGCATACT CAAA AGTATGCCGTTTTTGTATG CCAATTAGCATTAGC TERM 2274 1984539 - 1984518 - R 100 -13.1 -5.82172 | opp_overlap 1984518, overlap 1984508 1984504 ATGAACATAAAAAAA CGGCATACT CAAA AGTATGCCG TTTTTGTATGCCAAT TERM 2275 1984518 - 1984539 + r 100 -13.1 -4.9725 | opp_overlap 1984508 1984504 1984518 ATGAACATAAAAAAA CGGCATACT CAAA AGTATGCCG TTTTTGTATGCCAAT ihfB 1984841 - 1984560 - | integration host factor (IHF), DNA-binding protein, beta subunit TERM 2276 1984890 - 1984873 - R 100 -11.3 -4.90778 | opp_overlap 1984867 1984873 GTTATCGAAAGAAAA GGGAGCA ATGT TGCTCCC TTCTAATTTACTTAT TERM 2277 1984873 - 1984890 + r 90 -11.3 -3.65638 | opp_overlap 1984873, overlap 1984867 GTTATCGAAAGAAAA GGGAGCA ATGT TGCTCCC TTCTAATTTACTTAT rpsA 1986575 - 1984902 - | 30S ribosomal protein S1 TERM 2278 1986069 - 1986089 + g 72 -4.7 -4.73388 | opp_overlap 1986074, overlap 1986070 1986074 GATAACAGCACGACG TGAAACAAC AAC GTTGTTACG TTTTTGGTCAAGCTT cmk 1987345 - 1986671 - | cytidylate kinase TERM 2279 1987463 - 1987442 - R 93 -7.3 -5.54079 | opp_overlap 1987442 TGAAAAACTAAAAAA GCTCTGAAT TTTG ATACAGAGC TTTCATTGCATAGTA TERM 2280 1987442 - 1987463 + r 73 -7.3 -3.94002 | opp_overlap 1987442 TGAAAAACTAAAAAA GCTCTGAAT TTTG ATACAGAGC TTTCATTGCATAGTA aroA 1988784 - 1987504 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2281 1987626 - 1987613 - G 79 -3.1 -5.38326 | overlap 1987615 GCAACTAAAGAAAAA CACAT CGCC ATGCG GTGGTCATCATAAGT TERM 2282 1989321 - 1989311 - g 75 -5.4 -4.70107 | GACCAAAAGAAGAAA CATG GAT CATG CCAGAAATGATCAAT aat 1988971 - 1989690 + | leucyl/phenylalanyl-tRNA--protein transferase VF_1763 1989687 - 1990379 + | arginyl-tRNA-protein transferase infA 1990469 - 1990687 + | translation initiation factor IF-1 TERM 2283 1990768 - 1990730 - T 100 -7.1 -5.9003 | gap 2, opp_overlap 1990742, overlap 1990736 1990742 AAACTAATAAAAAAA CAATAACAAAAACCCAGTC AAT GACTGGG-TTTT-TTATTA GCTTTCAAAACAAAC TERM 2284 1990764 - 1990736 - T 100 -13.3 -4.50106 | opp_overlap 1990742, overlap 1990730 1990742 ATAAAAAAACAATAA CAAAAACCCAGTC AAT GACTGGGTTTTTT ATTAGCTTTCAAAAC TERM 2285 1990758 - 1990742 - T 100 -12.3 -5.40014 | opp_overlap 1990742, overlap 1990736 1990730 AAACAATAACAAAAA CCCAGTC AAT GACTGGG TTTTTTATTAGCTTT TERM 2286 1990742 - 1990758 + T 100 -12.3 -5.52096 | opp_overlap 1990742 1990736 1990730 AAACAATAACAAAAA CCCAGTC AAT GACTGGG TTTTTTATTAGCTTT clpA 1993062 - 1990810 - | ATP-dependent Clp protease ATP-binding subunit TERM 2287 1992428 - 1992442 + g 70 -5.6 -4.40561 | overlap 1992425 CCAACACCAGCTTCA CCCACT AAT AGAGGG TTATTTTTGCGACGA clpS 1993425 - 1993105 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2288 1993313 - 1993303 - G 76 -6.8 -4.4634 | opp_overlap 1993303 AACTTCAACAACAAA CTCC ATT GGAG TGTAATCGTCATTAT TERM 2289 1993857 - 1993871 + G 73 -8.6 -3.63228 | opp_overlap 1993857 1993856, overlap 1993853 AAGTGGTTCAATAAC GCCAAA GGG TTTGGC TTCATTTGTCCTGAA cspD 1993824 - 1994045 + | DNA replication inhibitor TERM 2290 1994073 - 1994092 + F 88 -7.2 -5.0133 | gap 1, opp_overlap 1994073 CAAGTTTATAAAAAA GGTGAGTCA ACA TG-CTCACC TTTTTTGAACCAATC TERM 2291 1994092 - 1994073 - f 89 -7.2 -5.27923 | gap 1, opp_overlap 1994073 CAAGTTTATAAAAAA GGTGAGTCA ACA TG-CTCACC TTTTTTGAACCAATC TERM 2292 1994382 - 1994359 - g 72 -3.3 -5.12068 | GATACTGAAGAAAAA TTCATTCTT GCTTTA AAAAATGAA TTAAAGAAAAAAGGG VF_1768 1994155 - 1994697 + | hypothetical protein TERM 2293 1994707 - 1994723 + T 90 -10.9 -3.76224 | opp_overlap 1994707 AACTAAGCGTAAAAA GCAGCAA ACA TTGCTGC TTTACTGCGTCACAA TERM 2294 1994723 - 1994707 - T 100 -10.9 -4.68506 | opp_overlap 1994707 AACTAAGCGTAAAAA GCAGCAA ACA TTGCTGC TTTACTGCGTCACAA ydiU 1996207 - 1994750 - | hypothetical protein TERM 2295 1996307 - 1996280 - H 100 -16.4 -5.4387 | opp_overlap 1996280 ACAGAAATGAAAAAA GCCGCACTAACC ATAA GGTTAATGCGGC TTTTCCAATTTTGGC TERM 2296 1996280 - 1996307 + H 100 -14.2 -4.28049 | opp_overlap 1996280 ACAGAAATGAAAAAA GCCGCACTAACC ATAA GGTTAATGCGGC TTTTCCAATTTTGGC folD 1996663 - 1997520 + | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase TERM 2297 1997569 - 1997549 - f 84 -11.9 -2.84344 | opp_overlap 1997549, overlap 1997546 1997540 1997539 CAAAACTATCAATTA GCGAGCAAT TTT ACTGCTCGC TTTTTTATATCTGCG TERM 2298 1997549 - 1997569 + F 100 -9.7 -5.4251 | opp_overlap 1997549 1997546 1997540 1997539 CAAAACTATCAATTA GCGAGCAAT TTT ACTGCTCGC TTTTTTATATCTGCG prkA 1997706 - 1999640 + | serine kinase PrkA TERM 2299 2000222 - 2000212 - g 71 -6.8 -4.05069 | opp_overlap 2000221 CAAAAAATAACAGAA TGGG AAA CCCA TCGAGCAGGTTATCA yeaH 1999771 - 2001042 + | hypothetical protein TERM 2300 2001464 - 2001474 + G 70 -5.4 -4.38503 | overlap 2001451 2001457 TGGACAGACGCCAGT TCGA TTG TCGA TTATTTATTGTTTGC ycgB 2001053 - 2002570 + | hypothetical protein TERM 2301 2002620 - 2002595 - T 100 -16.3 -5.27206 | opp_overlap 2002595 TAGACATAACAAAAA GCCTTGAGGTA TCAC TACCTCAAGGC TTTATTATATCAATC TERM 2302 2002595 - 2002620 + T 100 -16.3 -4.39998 | opp_overlap 2002595 TAGACATAACAAAAA GCCTTGAGGTA TCAC TACCTCAAGGC TTTATTATATCAATC VF_1775 2004879 - 2002651 - | isocitrate dehydrogenase TERM 2303 2002833 - 2002845 + g 70 -3.3 -4.99043 | AGCCAAAGTAAGTTT GAAGC TCT GCATC TTTTGTTTGTGCAGC TERM 2304 2002916 - 2002938 + g 85 -8.4 -4.42976 | opp_overlap 2002919 CCACGGTTGTCTAAC TCACCGACAC GAC GTGATGGTGA TTTATTGGTTTCTAA TERM 2305 2003358 - 2003371 + g 74 -5.3 -4.7373 | TATCGTGATCTGCAA GGTAA GTAT TTACC TTTTTAATCAGCTCC TERM 2306 2005608 - 2005588 - g 70 -8.3 -3.41878 | opp_overlap 2005588 GGTCGTAACCGACAA GTTCGCCGT ATG ACAGCAAAC ATTGGTTTCCCTACC rluE 2005084 - 2005704 + | 23S rRNA pseudouridine synthase VF_2633 2005807 - 2005980 + | putative lipoprotein TERM 2307 2005999 - 2006026 + T 100 -14.3 -5.31519 | opp_overlap 2005999 ATGACTTTATAAAAA GGCCTGATAGT TCTAAC ACTATCAGGCC TTTTTATTTCAATAT TERM 2308 2006026 - 2005999 - T 100 -14.3 -4.86001 | opp_overlap 2005999 ATGACTTTATAAAAA GGCCTGATAGT TCTAAC ACTATCAGGCC TTTTTATTTCAATAT VF_1777 2006345 - 2006073 - | hypothetical protein TERM 2309 2006558 - 2006582 + H 70 -2.1 -5.28176 | opp_overlap 2006548 2006564, overlap 2006564 AAACACTCTAAATAA TTAAAGGGGTA ATA TTCCCTTTTCA TTTTTTATAAATACA TERM 2310 2008169 - 2008159 - g 70 -5.4 -4.41895 | AATGGTTAATCAAAA TGCT GAG AGCA TCAAAAAGAATGCTC VF_1778 2006633 - 2008252 + | methyl-accepting chemotaxis protein tehB 2008613 - 2008278 - | tellurite resistance protein B fpr 2009432 - 2008659 - | ferredoxin-NADP reductase TERM 2311 2009384 - 2009402 + g 71 -7.4 -3.90588 | opp_overlap 2009383, overlap 2009373 TATCCGTCCAATCAT GGCGTTTT AAG ACAACGCC TTTAATTAAGCCATG norW 2010594 - 2009446 - | nitric oxide reductase norV 2012096 - 2010606 - | anaerobic nitric oxide reductase flavorubredoxin TERM 2312 2011341 - 2011331 - G 89 -5.4 -5.39755 | opp_overlap 2011331 2011329 TAGAATCATAAAAAA TCGT AAT ACGA TCTTCTTGATAATTA TERM 2313 2012242 - 2012203 - H 72 -5.9 -4.43501 | opp_overlap 2012203 2012203, overlap 2012204 2012238 AATTCACCCACAAAA GTGTCATTATGACAA TCATTTACTT TTGTCAAAACGACAC TATAATTGTCAAATT TERM 2314 2012826 - 2012805 - g 76 -6.7 -4.4017 | TCAATCGGGAGAAAA CTCAAATAA CTCA TCATTTGAG CGATCACCTGATAAT norR1 2012284 - 2013822 + | anaerobic nitric oxide reductase transcription regulator mnmA 2013939 - 2015063 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase hflD 2015075 - 2015692 + | hypothetical protein TERM 2315 2015728 - 2015697 - f 79 -4.4 -5.22039 | opp_overlap 2015702, overlap 2015688 2015702 CTCAAATTTAAAAAA TTAAAGCCTACTTG ATTT CAGGTAGGCTTTTT CCTTTAACATTTATA TERM 2316 2015723 - 2015702 - f 89 -8.7 -4.43669 | opp_overlap 2015702, overlap 2015697 ATTTAAAAAATTAAA GCCTACTTG ATTT CAGGTAGGC TTTTTCCTTTAACAT TERM 2317 2015702 - 2015723 + F 100 -10.9 -4.99134 | opp_overlap 2015702 2015697 ATTTAAAAAATTAAA GCCTACTTG ATTT CAGGTAGGC TTTTTCCTTTAACAT TERM 2318 2016766 - 2016746 - g 71 -3.9 -4.9218 | opp_overlap 2016758 CACCTAGCACAAAAA CTGCCTG TATCTCG CTGGCAG CGTGATCTAACTGAC purB 2015762 - 2017132 + | adenylosuccinate lyase TERM 2319 2017156 - 2017174 + T 95 -8.8 -5.49234 | opp_overlap 2017156 GTAAACCATTTAAAA GGCTGGCA TTT TGTCGGCC TTTTTTATTACCTCT VF_1787 2018054 - 2017200 - | AraC family transcriptional regulator TERM 2320 2017446 - 2017473 + g 74 -6.4 -4.37527 | opp_overlap 2017445 ACTGGTGCAAAGATG CTCAGCTACATT CAAT AATGTAATTGAG TTTTGGTAATTATCA VF_2634 2018161 - 2018415 + | hypothetical protein TERM 2321 2018425 - 2018452 + T 89 -11.4 -3.37493 | opp_overlap 2018425 CACTAATACAAAAAA TGCCAACGTAAT CTAC ACTACGTTGGCA TTCATATATTAAAAA TERM 2322 2018452 - 2018425 - T 100 -13.6 -5.49569 | opp_overlap 2018425 CACTAATACAAAAAA TGCCAACGTAAT CTAC ACTACGTTGGCA TTCATATATTAAAAA VF_1788 2018909 - 2018481 - | hypothetical protein TERM 2323 2019090 - 2019063 - H 70 -3.7 -5.01823 | gap 1, opp_overlap 2019063 2019074, overlap 2019067 ACAATAAGAACAAAA CTT-ATAAAACA TCCTT TGTTTTATTAAG GATTATTTATTTTCC TERM 2324 2021019 - 2021009 - g 75 -5.4 -4.78839 | AATTGCACAAGAAAA TCTC AAA GAGA TCAGCAGTGCAATTC VF_1789 2019150 - 2021243 + | methyl-accepting chemotaxis protein TERM 2325 2021269 - 2021302 + F 89 -12 -3.31537 | opp_overlap 2021273, overlap 2021273 ATTATCCACTCTAAT TAAACACCAATACT AAGAAA GGTATTGGTGTTTA TTCCTCTGCTGTCAT TERM 2326 2021273 - 2021298 + F 83 -8.4 -4.30177 | opp_overlap 2021273, overlap 2021269 TCCACTCTAATTAAA CACCAATACT AAGAAA GGTATTGGTG TTTATTCCTCTGCTG TERM 2327 2021298 - 2021273 - f 76 -7.7 -3.91911 | opp_overlap 2021269 2021273 TCCACTCTAATTAAA CACCAATAC TAAGAAAG GTATTGGTG TTTATTCCTCTGCTG VF_1790 2021369 - 2022565 + | ATP-dependent RNA helicase TERM 2328 2022638 - 2022603 - T 100 -10.1 -4.44548 | gap 1, opp_overlap 2022603 2022611, overlap 2022611 TACATCTAATTAAAA TACAAAAAGCTCATAC AAATA GTATGAGCTTTTT-TA TTGGTTTTTATCCAT TERM 2329 2022603 - 2022638 + T 83 -10.1 -3.88603 | gap 1, opp_overlap 2022603 2022611, overlap 2022611 TACATCTAATTAAAA TACAAAAAGCTCATAC AAATA GTATGAGCTTTTT-TA TTGGTTTTTATCCAT TERM 2330 2022631 - 2022611 - T 100 -9.8 -5.30339 | opp_overlap 2022603 2022611, overlap 2022603 ATTAAAATACAAAAA GCTCATAC AAATA GTATGAGC TTTTTTATTGGTTTT TERM 2331 2022611 - 2022631 + T 100 -9.8 -5.61689 | opp_overlap 2022611 2022603, overlap 2022603 ATTAAAATACAAAAA GCTCATAC AAATA GTATGAGC TTTTTTATTGGTTTT rssA 2023540 - 2022653 - | putative serine protease TERM 2332 2023246 - 2023228 - G 71 -6 -4.29327 | TATAAGGAATAGAAA GGTCTTCA ATA TGAAGATC GCCTAAAATATCCCC ybaK 2024037 - 2023567 - | hypothetical protein TERM 2333 2024426 - 2024447 + H 70 -3.8 -4.85599 | opp_overlap 2024430 ATCACACCTTATGAA TAATTCAG TCAATT CTGAGTTA TTTTTATGGAATAGA TERM 2334 2025684 - 2025674 - g 70 -5.4 -4.32678 | GCTCCAAATAAAGAA GCAT TAG ATGC GGGTCTTGATAACTT fhs 2024546 - 2026294 + | formate--tetrahydrofolate ligase yfbU 2026398 - 2026898 + | hypothetical protein TERM 2335 2026925 - 2026942 + T 100 -9.1 -5.24129 | TAAAACCAATTTTAA TCCTCGC CTTT GCGGGGA TTTTTTATACCCGCG TERM 2336 2027010 - 2026987 - T 100 -14 -5.80003 | opp_overlap 2026982 CTAATAAACAAAAAA TCCTCACTGA CGGA TCAGTGAGGA TTGAGCTTCTAACCT VF_1795 2028139 - 2027090 - | Outer membrane protein C rrmA 2028636 - 2029445 + | 23S rRNA methyltransferase A TERM 2337 2029465 - 2029503 + F 84 -3.9 -5.65927 | opp_overlap 2029463 2029465 ATCTCAAAAATAAGA CACCACATAATTCCATG ATAAA TAAGGATTTATATGGTG TTTTTTATTTCCCTG VF_1797 2029697 - 2030308 + | hypothetical protein clcA 2031697 - 2030291 - | chloride channel protein TERM 2338 2031912 - 2031894 - R 74 -3.2 -5.3321 | AACGAATAACAAAAA TTTCTATG AGA CACAAAAA ACCCGCAGAACTGTG TERM 2339 2031939 - 2031914 - R 100 -10.5 -5.43414 | opp_overlap 2031914 ATGAGACACAAAAAA CCCGCAGAACT GTGT AATTCTACGGG TTTCAAATAAGAGCC msbB 2032910 - 2031969 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase VF_1800 2032989 - 2033414 + | HIT family hydrolase TERM 2340 2033460 - 2033440 - T 100 -9.8 -5.59655 | opp_overlap 2033440 GAAACCAATAAAAAA GGCAGTTA TCTAT TAACTGCC TTTTACTTACTAACA TERM 2341 2033440 - 2033460 + T 100 -9.8 -4.45544 | opp_overlap 2033440 GAAACCAATAAAAAA GGCAGTTA TCTAT TAACTGCC TTTTACTTACTAACA VF_1801 2033753 - 2033493 - | hypothetical protein TERM 2342 2033578 - 2033589 + g 70 -3 -5.07567 | GCTTTTTCAAGGCTA TCAT TAAT ATGA TTTTTTAAGATATCG yfcM 2034291 - 2033761 - | hypothetical protein TERM 2343 2034965 - 2034951 - g 76 -3.6 -5.21709 | GTGTACACCAAAAAA TTCTAA ATA TCAGAA TACACAAACCAAAAG VF_1803 2034482 - 2035015 + | magnesium transport ATPase protein C TERM 2344 2035035 - 2035012 - f 79 -4.6 -5.27206 | opp_overlap 2035012 TAGACATAACAAAAA CTAATCCGAA TTAA TTCAGAATAG TTTTTTTCATTCGTC TERM 2345 2035012 - 2035035 + F 78 -2.4 -5.65513 | opp_overlap 2035012 TAGACATAACAAAAA CTAATCCGAA TTAA TTCAGAATAG TTTTTTTCATTCGTC yicG 2035121 - 2035762 + | inner membrane protein TERM 2346 2035805 - 2035836 + T 100 -13.2 -5.42975 | opp_overlap 2035805 GAGTAAGATCAAAAA GAGCCAGATTGA ATATAACG TCAATCTGGCTC TTTTTATTTATGTCA TERM 2347 2035836 - 2035805 - T 100 -13.2 -4.89233 | opp_overlap 2035805 GAGTAAGATCAAAAA GAGCCAGATTGA ATATAACG TCAATCTGGCTC TTTTTATTTATGTCA aroC 2037011 - 2035926 - | chorismate synthase VF_2635 2037396 - 2037524 + | hypothetical protein TERM 2348 2037530 - 2037549 + T 78 -7.8 -4.10672 | opp_overlap 2037530 ACAAGCATAAAAAAA GCCCGATG TTTC CATCAGGC TTTCATTTAGATTAA TERM 2349 2037549 - 2037530 - T 100 -10 -5.73339 | opp_overlap 2037530 ACAAGCATAAAAAAA GCCCGATG TTTC CATCAGGC TTTCATTTAGATTAA prmB 2038503 - 2037571 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase yfcN 2038556 - 2039089 + | hypothetical protein TERM 2350 2039122 - 2039095 - T 100 -10.6 -5.76633 | opp_overlap 2039095 TGATAGATAAAAAAA GATCCCACAGCC GTTA AGCTCTGGGATC TTTTTTATTTCATCT TERM 2351 2039095 - 2039122 + T 100 -9.9 -5.69793 | opp_overlap 2039095 TGATAGATAAAAAAA GATCCCACAGC CGTTAA GCTCTGGGATC TTTTTTATTTCATCT sixA 2039623 - 2039153 - | phosphohistidine phosphatase TERM 2352 2042367 - 2042353 - g 71 -7.2 -3.794 | opp_overlap 2042352 GCTTAATCGATCAAA TATCAG ATC CTGATA CTAATCTACGAGGTC ptrA 2039868 - 2042645 + | protease III TERM 2353 2042695 - 2042671 - T 100 -9.3 -4.85599 | opp_overlap 2042674, overlap 2042674 TTCACGTCATAAAAA TAAGGCCATCA TAA CGATGGCCTTT TAATTATATTGGTAT TERM 2354 2042692 - 2042674 - T 100 -11 -4.53475 | opp_overlap 2042674, overlap 2042671 ACGTCATAAAAATAA GGCCATCA TAA CGATGGCC TTTTAATTATATTGG TERM 2355 2042674 - 2042692 + T 100 -10.3 -4.56314 | opp_overlap 2042674 2042671 ACGTCATAAAAATAA GGCCATC ATAAC GATGGCC TTTTAATTATATTGG fadJ 2044812 - 2042713 - | multifunctional fatty acid oxidation complex subunit alpha fadI 2046140 - 2044812 - | 3-ketoacyl-CoA thiolase TERM 2356 2045042 - 2045056 + g 76 -7.2 -4.24002 | opp_overlap 2045041 ATTCTTTAGCAAATT TGTTTG AAG CAAACA TTTTCACATTTGAAA TERM 2357 2046382 - 2046365 - H 100 -9.9 -6.06723 | TTTGGTAAAAAAAAA CCACATC AGTC GATGTGG TCAGAATAAAAAACA TERM 2358 2046416 - 2046396 - H 76 -2.6 -5.55769 | GGTCAGAATAAAAAA CAATTAAC GAGTA GCCAATTG TAAAAATCAGTTTCA TERM 2359 2046824 - 2046809 - H 77 -3.3 -5.47914 | opp_overlap 2046811 AAAAAGCATAAAAAA TAGAG TTAAAG CTCTA TTAACATCAATTAGA VF_1812 2047021 - 2048247 + | long-chain fatty acid transport protein precursor TERM 2360 2048277 - 2048294 + F 100 -9.1 -5.27779 | opp_overlap 2048272 2048277 AGTATAAAATCAAAA GGTCAGC ATAC GCTGGCC TTTTTTGATCTTGAA TERM 2361 2048294 - 2048277 - f 83 -6.9 -4.74012 | opp_overlap 2048277, overlap 2048272 AGTATAAAATCAAAA GGTCAGC ATAC GCTGGCC TTTTTTGATCTTGAA VF_1813 2048765 - 2050063 + | long-chain fatty acid transport protein precursor TERM 2362 2050085 - 2050104 + F 100 -12.2 -5.4756 | opp_overlap 2050085 AACCATTTATATTAA GGCCTCTA ATTT TAGAGGCC TTTTTTATTGAACTT TERM 2363 2050104 - 2050085 - f 89 -12.2 -3.28684 | opp_overlap 2050085 AACCATTTATATTAA GGCCTCTA ATTT TAGAGGCC TTTTTTATTGAACTT TERM 2364 2050266 - 2050249 - g 80 -7.7 -4.4715 | CCTCAATCCATAAAA CAGCAAC CTAT GCTGCTG AGCCTCACATCTCTT yjdF 2050225 - 2050830 + | inner membrane protein vacJ 2051688 - 2050906 - | VacJ lipoprotein TERM 2365 2051823 - 2051797 - R 100 -20.2 -5.35459 | opp_overlap 2051797 ATAGATGATAAAAAA CGGGCAGAAGCG CAA CGCCTCTGCCCG TTCTAGTATGACACT TERM 2366 2051797 - 2051823 + r 100 -18 -3.4678 | opp_overlap 2051797 ATAGATGATAAAAAA CGGGCAGAAGCG CAA CGCCTCTGCCCG TTCTAGTATGACACT ccmI 2053065 - 2051848 - | cytochrome c-type biogenesis protein CcmI ccmH 2053577 - 2053062 - | cytochrome c-type biogenesis protein CcmH ccmG 2054128 - 2053577 - | periplasmic thioredoxin of cytochrome c-type biogenesis TERM 2367 2054015 - 2053992 - G 76 -11.1 -2.55074 | opp_overlap 2053989 TCTAAGCGGAATTCA GGTACTGGT TTACCT ACCAGTACC GATTCAAGTTTAGTT ccmF 2056090 - 2054132 - | heme lyase, CcmF subunit ccmE 2056572 - 2056087 - | cytochrome c-type biogenesis protein CcmE ccmD 2056775 - 2056569 - | heme exporter protein D TERM 2368 2056717 - 2056699 - G 74 -3.7 -5.03713 | overlap 2056701 2056710 AATAATGAAAGAAAA GTGGCAC CAAAT GCGCCCC ACACATAAGTGGCAT ccmC 2057551 - 2056799 - | heme exporter subunit C ccmB 2058263 - 2057595 - | heme exporter subunit B ccmA 2058878 - 2058264 - | cytochrome c biogenesis protein CcmA TERM 2369 2059123 - 2059106 - R 100 -9.1 -5.64274 | opp_overlap 2059104 2059106 TTATGGATAAAAAAA GCCCCTC AAAT GAGGAGC TCTTAAATATTAATT VF_1825 2059619 - 2059158 - | hypothetical protein TERM 2370 2059446 - 2059457 + g 73 -2.2 -5.31855 | ACGAAACTCTACAAA TTGC TTTT GCAG TTTTTGTTGTTCATC cheW 2060113 - 2059619 - | chemotaxis coupling protein CheW VF_1828 2061200 - 2060142 - | chemotaxis coupling protein VF_1829 2061967 - 2061200 - | chromosome partitioning protein ParA cheB 2063106 - 2061976 - | chemotaxis-specific methylesterase TERM 2371 2062909 - 2062942 + g 70 -9.7 -2.71503 | gap 1, overlap 2062905 2062904 2062938 CATGATCTCTCGGAC TGCTGAGATGCC-GTC CAT GACTGGCATCTCAATA TCCATTGTTATTACA cheA 2065329 - 2063122 - | chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY cheZ 2066055 - 2065339 - | chemotaxis regulator CheZ, protein phosphatase for CheY cheY 2066455 - 2066087 - | chemotaxis regulator CheY, transmits signal to flagellar motor component fliA 2067235 - 2066504 - | flagellar biosynthesis sigma factor flhG 2068118 - 2067228 - | flagellar synthesis regulator FlhG flhF 2069593 - 2068115 - | flagellar biosynthesis regulator FlhF TERM 2372 2069065 - 2069089 + g 78 -10.8 -2.99179 | opp_overlap 2069064, overlap 2069067 CGTTATGCGAACGAC GACCTTTCTC ATAAC GAGAAGGGTC TAATTTCGGTTGTGT flhA 2071720 - 2069627 - | flagellar biosynthesis protein FlhA TERM 2373 2071923 - 2071913 - H 79 -4 -5.46706 | ATTTTAAAAGAAAAA TAAG AAA CTTA ATTGAAAAAAATGCG VF_1838 2072005 - 2072682 + | hypothetical protein flhB 2073826 - 2072696 - | flagellar biosynthesis protein FlhB fliR 2074654 - 2073872 - | flagellar biosynthesis protein FliR fliQ 2074961 - 2074692 - | flagellar biosynthesis protein FliQ fliP 2075840 - 2074971 - | flagellar biosynthesis protein FliP TERM 2374 2075591 - 2075576 - G 71 -6.2 -4.24948 | opp_overlap 2075575 TCATTAGACCTAAAA TCTGTA AATT TACAGA ATAATCTTCACCACC TERM 2375 2075820 - 2075802 - G 100 -12.4 -4.32951 | AAAGAAGAGTGAAAA TGCCGCCA AAA CGGCGGCA ATAAAATTAGTTTTT fliO 2076213 - 2075827 - | flagellar biosynthesis protein FliO TERM 2376 2076193 - 2076182 - G 70 -5.8 -4.46493 | overlap 2076155 GCAAATAGAGGAAAA GGCA CTAA TGCC AATAACCATAGCTTT fliN 2076626 - 2076237 - | flagellar motor switch protein fliM 2077683 - 2076649 - | flagellar motor switch protein FliM fliL1 2078176 - 2077691 - | flagellar basal body-associated protein FliL fliK 2079491 - 2078241 - | flagellar hook length control protein FliK TERM 2377 2079136 - 2079149 + g 76 -2.3 -5.40004 | opp_overlap 2079129, overlap 2079137 TCATCAGATGACTCT TCGTC ACCC GACGC TTTTTTACTTTCATC TERM 2378 2079501 - 2079517 + r 70 -3.7 -5.00616 | GCTCATAGTATGTTC TCTACAT TGA GTGTGGA TTTTTTGACGAGCGC fliJ 2080106 - 2079663 - | flagellar biosynthesis chaperone TERM 2379 2079727 - 2079739 + g 76 -3.4 -5.29782 | ATCATTTTTTGCTCT TGCT TATCC AGCA TTTTTTGTCGCTCTG fliI 2081436 - 2080117 - | flagellum-specific ATP synthase TERM 2380 2080272 - 2080282 + g 73 -5.4 -4.57073 | opp_overlap 2080270 ACGCCCCAATCGACA CCAA GTC TTGG TTTTTACGGCAAGTA fliH 2082233 - 2081436 - | flagellar assembly protein H TERM 2381 2082162 - 2082172 + g 89 -5.4 -5.37345 | opp_overlap 2082151, overlap 2082153 2082151 GTAATCTGGGGACTC CCAA ATA TTGG TTTTTTGTAGTTCAC TERM 2382 2082305 - 2082275 - R 93 -9.9 -4.16305 | opp_overlap 2082275 ATTTAGAAAGAATAA CGGCTATTTCA ATCCAATTA TGAAATAGCCG TTTAATTATAACTCA TERM 2383 2082275 - 2082305 + r 87 -9.9 -4.00868 | opp_overlap 2082275 ATTTAGAAAGAATAA CGGCTATTTCA ATCCAATTA TGAAATAGCCG TTTAATTATAACTCA TERM 2384 2082343 - 2082333 - R 71 -5.4 -4.62054 | overlap 2082342 TCAATGAAATGAAAA CGTA TTA TACG AATTCATCCGCACCG fliG 2083389 - 2082337 - | flagellar motor switch protein G TERM 2385 2083325 - 2083353 + g 70 -5.4 -4.35958 | opp_overlap 2083325 TCTGAGCCTGATAAT GAAGAAAGATCA AATTC TGGTGTTTCTTC TTCTTTATTTCCTGC fliF 2085115 - 2083382 - | flagellar MS-ring protein TERM 2386 2084789 - 2084779 - G 70 -5.4 -4.41047 | opp_overlap 2084779 2084777 AGGCGGGAACTAAAA TGGT ATT ACCA TCTAGTTTGTATTCT fliE 2085444 - 2085133 - | flagellar hook-basal body protein FliE TERM 2387 2085346 - 2085363 + g 70 -5.6 -4.46404 | CGCAAACATTGCACT GAAGTC CGCACC GACTTC TTTTCCTGTTACTTG TERM 2388 2085370 - 2085407 + g 75 -9.9 -3.3941 | overlap 2085373 2085398 ACCGACTTCTTTTCC TGTTACTTGACGCGTTG TATT TGACGCGTCAAGCATCA TTGCTTGCATCTCGT TERM 2389 2085373 - 2085404 + g 73 -10.2 -2.85337 | overlap 2085370 2085398 GACTTCTTTTCCTGT TACTTGACGCGTTG TATT TGACGCGTCAAGCA TCATTGCTTGCATCT flrC 2086978 - 2085545 - | two-component response regulator FlrC flrB 2088043 - 2086982 - | sensory histidine kinase FlrB TERM 2390 2088066 - 2088102 + r 76 -9.7 -2.8541 | gap 2, opp_overlap 2088066 2088071, overlap 2088065 2088071 TTCCCGCCAAAACAA CAAAAGGGCTGATGCAT TTTAC ATGC--CAGCCCTTTTG GTATTTATTATCAAT TERM 2391 2088102 - 2088066 - R 93 -9.7 -4.17048 | gap 2, opp_overlap 2088066 2088065 2088071, overlap 2088071 TTCCCGCCAAAACAA CAAAAGGGCTGATGCAT TTTAC ATGC--CAGCCCTTTTG GTATTTATTATCAAT TERM 2392 2088097 - 2088071 - R 73 -3.8 -5.093 | gap 2, opp_overlap 2088071 2088066 2088065, overlap 2088066 GCCAAAACAACAAAA GGGCTGATGCAT TTTAC ATGC--CAGCCC TTTTGGTATTTATTA flrA 2089683 - 2088202 - | sigma-54-dependent transcriptional activator FlrA TERM 2393 2089813 - 2089779 - R 72 -9.5 -2.62062 | gap 1, opp_overlap 2089783 2089785, overlap 2089778 2089777 2089782 2089785 ATAAGAAAAATAAGG CAACTATGACTGTCTA CTTA TCGACAGTCAT-GTTG TAAATGAGAGGTTAG TERM 2394 2089785 - 2089808 + r 70 -8.2 -3.24924 | opp_overlap 2089782 2089779 2089778 2089777 2089785, overlap 2089783 AAAATAAGGCAACTA TGACTGTCTA CTTA TCGACAGTCA TGTTGTAAATGAGAG fliS 2090282 - 2089872 - | flagellar protein FliS flaI 2090588 - 2090298 - | flagellar protein FlaI fliD 2092590 - 2090620 - | flagellar capping protein flaG 2093034 - 2092615 - | flagellar protein FlaG TERM 2395 2093087 - 2093061 - R 95 -8.8 -5.27779 | opp_overlap 2093060 2093061 2093063 CCTAATACGAAAAAA GACAGCAAGA GGAGCGG TCCTGCTGTC ATATTTCAGTAAGTG flaE 2094354 - 2093158 - | flagellin flaD 2095667 - 2094540 - | flagellin TERM 2396 2094683 - 2094702 + g 71 -5 -4.50943 | TTTGGCTGTTAGACG CATTCACG TTCT CGTTAATG TTTTCTAAGTTGTTA TERM 2397 2095989 - 2096006 + r 73 -8.3 -3.63068 | opp_overlap 2095989 TTATAAACAAAAAAA GCCGAGG CAAG CCCCGGC TTTGGCATAGTGTGA TERM 2398 2096006 - 2095989 - R 100 -10.5 -6.02919 | opp_overlap 2095989 TTATAAACAAAAAAA GCCGAGG CAAG CCCCGGC TTTGGCATAGTGTGA flaC 2097196 - 2096063 - | flagellin TERM 2399 2096141 - 2096160 + g 74 -6.5 -4.32678 | opp_overlap 2096141 2096140 TGCTTGTTGAAGAAT CTGAGAT TTCGTC ATCTCAG TTGTTTCTTTAGCAA TERM 2400 2097563 - 2097547 - R 100 -10.9 -5.90981 | opp_overlap 2097547 TTAGACGAAAAAAAA CCAGCAA TCA TTGCTGG TTTAAAAATAGTTAT TERM 2401 2097547 - 2097563 + r 89 -10.9 -3.59583 | opp_overlap 2097547 TTAGACGAAAAAAAA CCAGCAA TCA TTGCTGG TTTAAAAATAGTTAT flaB 2098727 - 2097594 - | flagellin flaA 2100185 - 2099046 - | flagellin TERM 2402 2100778 - 2100759 - R 95 -8.6 -5.76237 | opp_overlap 2100757 2100759 TATAGAAATAAAAAA GCCTAACA TCAC TGCTAGGC TCTCTATTTTATTTA flgL 2101997 - 2100804 - | flagellar hook-associated protein FlgL flgK 2103895 - 2102015 - | flagellar hook-associated protein FlgK TERM 2403 2104130 - 2104105 - R 100 -8.3 -5.95286 | opp_overlap 2104092 2104105 AGCAAAAACAAAAAA TCCTGCCGCTT TTTC AAGAGACAGGA TTTAATGTTAGTGTT flgJ 2105184 - 2104165 - | peptidoglycan hydrolase TERM 2404 2105230 - 2105248 + r 100 -10.3 -4.54553 | opp_overlap 2105230 TAATGCCAAAAAAAA CGCACCT ACAAG AGGTGCG TTTATTGTCTTTGTA TERM 2405 2105248 - 2105230 - R 100 -10.3 -5.81032 | opp_overlap 2105230 TAATGCCAAAAAAAA CGCACCT ACAAG AGGTGCG TTTATTGTCTTTGTA flgI 2106399 - 2105278 - | flagellar basal body P-ring protein flgH 2107193 - 2106402 - | flagellar basal body L-ring protein flgG 2107994 - 2107206 - | flagellar basal body rod protein FlgG flgF 2108798 - 2108049 - | flagellar basal body rod protein FlgF TERM 2406 2108986 - 2108965 - R 100 -10.2 -5.00884 | opp_overlap 2108965 ATTCTGGGTAAAAAA TTGCCGTC ACATAA GACGGCAA TTTTAAGATATTGGA TERM 2407 2108965 - 2108986 + r 100 -10.2 -4.1964 | opp_overlap 2108965 ATTCTGGGTAAAAAA TTGCCGTC ACATAA GACGGCAA TTTTAAGATATTGGA flgE 2110311 - 2109013 - | flagellar hook protein FlgE TERM 2408 2110145 - 2110157 + g 74 -4.8 -4.81249 | overlap 2110140 GTTGTTTGTGCACCA CCAC CGGTT GTGG TTTTTGCATTTGAGA TERM 2409 2110424 - 2110469 + r 82 -7.8 -4.47551 | gap 2, opp_overlap 2110424 2110425, overlap 2110425 2110425 ATTAAATGATGAAAA TGG-GAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGCCC TTTTATGCCTTACCT TERM 2410 2110425 - 2110468 + r 87 -11.3 -3.27808 | gap 2, opp_overlap 2110425 2110424, overlap 2110424 2110425 TTAAATGATGAAAAT GG-GAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGCC CTTTTATGCCTTACC TERM 2411 2110425 - 2110467 + r 82 -11.5 -2.56203 | gap 1, opp_overlap 2110425 2110424, overlap 2110425 2110424 TTAAATGATGAAAAT GGGAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGC CCTTTTATGCCTTAC flgD 2111182 - 2110472 - | flagellar basal body rod modification protein TERM 2412 2110891 - 2110876 - G 70 -9 -3.24902 | opp_overlap 2110873 GAACATCACGACCAA CAAGCG AAGA CGCTTG TAATGCTTGGTTAGA flgC 2111614 - 2111198 - | flagellar basal body rod protein FlgC flgB 2112012 - 2111617 - | flagellar basal body rod protein FlgB TERM 2413 2112160 - 2112185 + r 74 -9.1 -3.10164 | opp_overlap 2112166, overlap 2112166 TAGATTACAGGCACA AAAAAAGCGAC CTAA GTCGCTTTTTG TTCAATAATCACTCA TERM 2414 2112179 - 2112166 - R 93 -8.1 -5.65177 | opp_overlap 2112166 2112160 ACAGGCACAAAAAAA GCGAC CTAA GTCGC TTTTTGTTCAATAAT TERM 2415 2112166 - 2112179 + r 90 -8.1 -5.11063 | opp_overlap 2112166, overlap 2112160 ACAGGCACAAAAAAA GCGAC CTAA GTCGC TTTTTGTTCAATAAT cheR 2113035 - 2112208 - | chemotaxis regulator, protein-glutamate methyltransferase, CheR cheV1 2114039 - 2113119 - | CheW/CheY hybrid protein CheV1 TERM 2416 2114691 - 2114671 - g 81 -2.6 -5.626 | opp_overlap 2114686 2114687 GACTGTAGAAAAAAA CGACAT CTGCATGGT ATGTCG CAACGACAGTGTTAT flgA 2114096 - 2114863 + | flagellar basal body P-ring biosynthesis protein FlgA flgM 2115079 - 2115390 + | flagellar anti-sigma-28 factor FlgM flgN 2115437 - 2115865 + | chaperone FlgN TERM 2417 2115900 - 2115921 + T 95 -6.6 -5.82281 | opp_overlap 2115900, overlap 2115897 2115895 CGATTTCTTATCCAA CCGTGTTG TATTTC TAACACGG TTTTTTTCTATCTTT TERM 2418 2116120 - 2116096 - T 100 -17.9 -5.98675 | TACAAAAACAAAAAA GCCCTCGGCAC CAA GTACCGAGGGC AATAGCATTATGTCG VF_1883 2116605 - 2116174 - | hypothetical protein TERM 2419 2116451 - 2116467 + g 83 -7.3 -4.76644 | TCAACTTTAGATGCT CGCATTG CTC TAATGCG TTTTTCATCGATGTT VF_1884 2117252 - 2116617 - | hypothetical protein VF_1885 2117424 - 2118560 + | hypothetical protein TERM 2420 2118581 - 2118617 + F 100 -9.6 -4.4727 | TTTTCAACCTTTAAT CAATGAGGAACAGTGC CTAGC GTGTTGTTTCTCATTG TTTTATGACTCTTAC VF_1886 2118702 - 2120153 + | TPR repeat-containing protein VF_2636 2120235 - 2120408 + | hypothetical protein TERM 2421 2120477 - 2120493 + T 100 -9.4 -4.83615 | opp_overlap 2120477 CAAAGCATAAAAAAA CCGCTG AATAA CAGCGG TTTTTATCCAAAATA TERM 2422 2120493 - 2120477 - T 100 -9.4 -5.75599 | opp_overlap 2120477 CAAAGCATAAAAAAA CCGCTG AATAA CAGCGG TTTTTATCCAAAATA gltX 2121942 - 2120518 - | glutamyl-tRNA synthetase TERM 2423 2122095 - 2122071 - R 93 -7.2 -5.41787 | opp_overlap 2122071 TAAAAAATAGAAAAA GTGGTTAAGC GACTT ACTCAACCAC TTTTAAAATTCAAAA VF_1888 2122909 - 2122112 - | putative lipoprotein TERM 2424 2122973 - 2122943 - R 93 -9.8 -4.10453 | opp_overlap 2122949, overlap 2122933 2122949 CAAATGCTCTTAAAA TAAAAACGCCAGCA ATT CGCTAGCGTTTTAA AGATTAACTAAGTAA TERM 2425 2122967 - 2122949 - R 95 -8.8 -5.45802 | opp_overlap 2122949, overlap 2122943 CTCTTAAAATAAAAA CGCCAGCA ATT CGCTAGCG TTTTAAAGATTAACT chiP 2124050 - 2122998 - | chitoporin ChiP TERM 2426 2123255 - 2123245 - G 72 -3.2 -5.04175 | CCAATTACAGAAAAA GACC CTT GATC TACATTTTCACCAGA TERM 2427 2124552 - 2124535 - R 100 -8.4 -5.84381 | opp_overlap 2124535 TTACCAATAAAAAAA GGAGCC ATATAA GGCTCC TTTTTAATAACCGAA TERM 2428 2124535 - 2124552 + r 86 -8.4 -4.72272 | opp_overlap 2124535 TTACCAATAAAAAAA GGAGCC ATATAA GGCTCC TTTTTAATAACCGAA ligA 2126584 - 2124578 - | NAD-dependent DNA ligase LigA TERM 2429 2126642 - 2126628 - R 100 -10 -6.34616 | opp_overlap 2126628 2126637 TTAAAATAAAAAAAA GGCTCA TGA TGAGCC TTTCTCATTAATCCT TERM 2430 2126628 - 2126642 + r 87 -10 -4.08546 | opp_overlap 2126628, overlap 2126637 TTAAAATAAAAAAAA GGCTCA TGA TGAGCC TTTCTCATTAATCCT zipA 2127752 - 2126676 - | cell division protein ZipA cysZ 2127962 - 2128714 + | putative sulfate transport protein CysZ cysK 2128845 - 2129813 + | cysteine synthase A, O-acetylserine sulfhydrolase A subunit TERM 2431 2129851 - 2129878 + F 100 -13.6 -3.65514 | opp_overlap 2129842 2129858 2129859, overlap 2129859 AATCAATTTTTTATC CAAAAAAGCCCC TTCT GGGGTTTTTTTG TTGATTTCATTTCCC TERM 2432 2129871 - 2129858 - f 73 -3.7 -5.08824 | opp_overlap 2129851 2129859, overlap 2129859 TTTTTATCCAAAAAA GCCCC TTCT GGGGT TTTTTTGTTGATTTC TERM 2433 2129859 - 2129870 + F 100 -7.2 -5.9003 | opp_overlap 2129858 2129859, overlap 2129851 TTTTATCCAAAAAAG CCCC TTCT GGGG TTTTTTTGTTGATTT ptsH 2130134 - 2130391 + | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 2434 2130856 - 2130819 - g 90 -10.7 -4.21908 | gap 1, opp_overlap 2130821, overlap 2130821 GATGATTATCTAAAA GAGCGCGCTACAGATATC CGT GATATCGGTAGC-CGCTT TGTTAAAAACGCACT TERM 2435 2130854 - 2130821 - g 95 -13.3 -3.70674 | gap 1, opp_overlap 2130821, overlap 2130819 TGATTATCTAAAAGA GCGCGCTACAGATATC CGT GATATCGGTAGC-CGC TTTGTTAAAAACGCA TERM 2436 2130821 - 2130854 + G 100 -13.3 -4.15044 | gap 1, opp_overlap 2130821 2130819 TGATTATCTAAAAGA GCGCGCTACAGATATC CGT GATATCGGTAGC-CGC TTTGTTAAAAACGCA ptsI 2130447 - 2132171 + | PEP-protein phosphotransferase of PTS system (enzyme I) TERM 2437 2132219 - 2132194 - f 89 -9.1 -4.14764 | opp_overlap 2132196 2132218, overlap 2132196 GTGCAAAGAATTAAA TATAGCCACTA AGTT TAGTGGCTATT TAATATAAACTTTAG TERM 2438 2132196 - 2132217 + F 90 -11.7 -3.85114 | opp_overlap 2132196 2132194 GCAAAGAATTAAATA TAGCCACTA AGTT TAGTGGCTA TTTAATATAAACTTT TERM 2439 2132217 - 2132196 - f 90 -11.7 -3.66237 | opp_overlap 2132196, overlap 2132194 GCAAAGAATTAAATA TAGCCACTA AGTT TAGTGGCTA TTTAATATAAACTTT crr 2132246 - 2132755 + | glucose-specific PTS system component TERM 2440 2132795 - 2132824 + T 100 -16.5 -5.09685 | opp_overlap 2132795 TTAAAGACAAAAAAA GGCCGCTGTTTTC TAAA GATAACAGCGGCC TTTTTGTATCTATTC TERM 2441 2132824 - 2132795 - T 100 -16.5 -5.88197 | opp_overlap 2132795 TTAAAGACAAAAAAA GGCCGCTGTTTTC TAAA GATAACAGCGGCC TTTTTGTATCTATTC yfeX 2133799 - 2132894 - | hypothetical protein VF_1899 2134274 - 2133882 - | hypothetical protein VF_1900 2134740 - 2134291 - | COME operon protein 3 TERM 2442 2134854 - 2134831 - H 70 -4.6 -4.73108 | TGGATAAAATTAAAA CTTTGAGCTA GATA CACCTCAAAG ATCAAAATCTATATT VF_1901 2134945 - 2135304 + | hypothetical protein TERM 2443 2135330 - 2135358 + T 73 -8.9 -3.15574 | opp_overlap 2135332, overlap 2135328 2135332 CTTCGACATATAAAA AAGAGATGGGCAT ATC ATACCCATCTCTC TATTCATCGAGTTGA TERM 2444 2135356 - 2135332 - T 100 -13.7 -5.4251 | opp_overlap 2135330 2135328 2135332 TCGACATATAAAAAA GAGATGGGCAT ATC ATACCCATCTC TCTATTCATCGAGTT TERM 2445 2135332 - 2135356 + T 84 -11.5 -3.13639 | opp_overlap 2135332, overlap 2135330 2135328 TCGACATATAAAAAA GAGATGGGCAT ATC ATACCCATCTC TCTATTCATCGAGTT VF_1902 2135521 - 2135390 - | hypothetical protein napC 2136106 - 2135531 - | nitrate reductase, cytochrome c-type, periplasmic napB 2136612 - 2136139 - | nitrate reductase, small, cytochrome C550 subunit, periplasmic napA 2139177 - 2136688 - | nitrate reductase TERM 2446 2136902 - 2136912 + g 81 -5.4 -5.07567 | ACTTCATCTCCACGA CGTA AAT TACG TTTTTTCGCATCTGC TERM 2447 2139116 - 2139147 + g 72 -8.6 -3.53012 | opp_overlap 2139122, overlap 2139122 2139124 2139134 2139138 2139138 GGCAGCGTAACCCCT GCAACAGCTGCAGC CGAA GCTGCTGCGTTTGC TTTAACAAACGCACG TERM 2448 2139124 - 2139142 + g 71 -6.6 -4.05788 | opp_overlap 2139122, overlap 2139122 2139116 2139134 2139138 2139138 AACCCCTGCAACAGC TGCAGCCG AAG CTGCTGCG TTTGCTTTAACAAAC napD 2139458 - 2139174 - | protein required for assembly of periplasmic nitrate reductase (NapA) napF 2139976 - 2139452 - | ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase (NapA) narQ 2140164 - 2141855 + | nitrate/nitrite sensor protein NarQ narP 2141876 - 2142487 + | DNA-binding response regulator in two-component regulatory system with NarQ VF_1910 2142489 - 2142818 + | ubiquinone biosynthesis protein AarF TERM 2449 2142878 - 2142907 + T 100 -12.3 -4.53705 | opp_overlap 2142883, overlap 2142883 TTCATTTTATAAACA AAAAACGCCAACT TTTA AGTTGGCGTTTTA TTTTATCTGCACATT TERM 2450 2142883 - 2142902 + T 100 -12.2 -5.23292 | opp_overlap 2142883, overlap 2142878 TTTATAAACAAAAAA CGCCAACT TTTA AGTTGGCG TTTTATTTTATCTGC TERM 2451 2142902 - 2142883 - T 100 -12.2 -5.72622 | opp_overlap 2142878 2142883 TTTATAAACAAAAAA CGCCAACT TTTA AGTTGGCG TTTTATTTTATCTGC VF_1911 2143220 - 2142939 - | hypothetical protein VF_1912 2143671 - 2143387 - | hypothetical protein TERM 2452 2144051 - 2144040 - g 73 -5.8 -4.5123 | AATGTATTAAATAAA CGTG GTAC CACG TATCGCCAACTAACA yffB 2143857 - 2144216 + | arsenate reductase YffB TERM 2453 2144903 - 2144875 - g 70 -9.5 -2.53112 | overlap 2144870 2144874 2144878 ATCCAATTCACCAAG CGATGCCCGCTCT GTC AGAGCTAGCAACG ACCGTTTGGGACAAT dapE 2144250 - 2145383 + | succinyl-diaminopimelate desuccinylase TERM 2454 2145401 - 2145426 + F 86 -12.7 -2.93901 | overlap 2145397 2145403 ATAAATTAGGGTTAT GATGAGAGAGC TTTT GTTCTCTCATC TCTAATTGGTGCCCT TERM 2455 2145403 - 2145424 + F 74 -9.5 -3.02096 | overlap 2145401 2145397 AAATTAGGGTTATGA TGAGAGAGC TTTT GTTCTCTCA TCTCTAATTGGTGCC VF_1915 2145442 - 2146110 + | D-alanyl-D-alanine carboxypeptidase TERM 2456 2146240 - 2146228 - g 88 -2.7 -5.95166 | GTCAATCAAAAAAAA TGAAA AAC CTTCA AGAACAAGATGATAT VF_1916 2146113 - 2146322 + | hypothetical protein TERM 2457 2146330 - 2146311 - T 100 -7.8 -6.17268 | opp_overlap 2146311 2146313 TCAGAACAAAAAAAA GACGCTCA ATAA CGAGCGCC TTTCTTCATTTTATT nlpB 2147403 - 2146351 - | lipoprotein dapA 2148296 - 2147415 - | dihydrodipicolinate synthase TERM 2458 2147646 - 2147658 + g 70 -7.7 -3.73756 | opp_overlap 2147646, overlap 2147644 AGCAGCTAAAGCAAA CATGG TCG CCATG TCTTTTGCTGCAATG TERM 2459 2147658 - 2147646 - G 75 -7.7 -4.08887 | opp_overlap 2147646 2147644 AGCAGCTAAAGCAAA CATGG TCG CCATG TCTTTTGCTGCAATG gcvR 2148568 - 2149095 + | DNA-binding transcriptional repressor, regulatory protein accessory to GcvA bcp 2149194 - 2149664 + | thioredoxin-dependent thiol peroxidase TERM 2460 2149706 - 2149686 - T 78 -6.9 -4.38116 | opp_overlap 2149686, overlap 2149681 CTTATAAAAATTAAA GGCGATA TCACGAG TATCGCC TTTTTTATTGCCGTA TERM 2461 2149686 - 2149706 + T 93 -7.6 -5.46657 | opp_overlap 2149686 2149681 CTTATAAAAATTAAA GGCGATAT CACGA GTATCGCC TTTTTTATTGCCGTA yfgO 2150786 - 2149722 - | inner membrane protein TERM 2462 2150189 - 2150205 + g 82 -8 -4.65895 | TCTCCAACCACACTT TCGTCG CCAGA CGACGA TTTTTAGGTAAAAGA TERM 2463 2150278 - 2150268 - G 85 -5.4 -5.29445 | TTTTAATAAGAAAAA CACT AGC AGTG GTACAAGAATAAGAT VF_2637 2151016 - 2150795 - | SirA-like redox protein yfgC 2151175 - 2152629 + | peptidase yfgD 2152645 - 2152995 + | oxidoreductase TERM 2464 2153041 - 2153000 - f 93 -12.6 -3.45386 | opp_overlap 2153011, overlap 2153002 2153003 AGATTTTATAAGGAA TACCAACCTAAGTAAGTA GCCACA CACTTACTTAGGTTGACA TAAAAACAAGGAATG TERM 2465 2153039 - 2153002 - f 91 -13 -3.29593 | opp_overlap 2153011, overlap 2153000 2153003 ATTTTATAAGGAATA CCAACCTAAGTAAGTA GCCACA CACTTACTTAGGTTGA CATAAAAACAAGGAA TERM 2466 2153038 - 2153003 - f 93 -14.3 -2.57274 | opp_overlap 2153011, overlap 2153002 2153000 TTTTATAAGGAATAC CAACCTAAGTAAGTA GCCACA CACTTACTTAGGTTG ACATAAAAACAAGGA VF_1924 2153060 - 2153488 + | hypothetical protein TERM 2467 2153530 - 2153547 + T 100 -9.9 -5.31877 | opp_overlap 2153530 TAGCGAAAGAAAAAA GGTGACT ATGC AGTCACC TTTTTTATCATCAAT TERM 2468 2153547 - 2153530 - T 100 -9.9 -5.65927 | opp_overlap 2153530 TAGCGAAAGAAAAAA GGTGACT ATGC AGTCACC TTTTTTATCATCAAT VF_1925 2154739 - 2153564 - | hypothetical protein TERM 2469 2154851 - 2154863 + H 83 -4.9 -5.42198 | opp_overlap 2154851 ACCATTAGAGAGCAA CTTTT ATA AAAAG TTTTATTTTTTCACG uraA 2154976 - 2156196 + | uracil transporter TERM 2470 2156218 - 2156259 + T 93 -14.2 -2.95317 | gap 1, opp_overlap 2156227, overlap 2156227 GGGTTAGGGTCTAGA TAATAAAAAGGCTTGATGA TTAAT TCATCAAGCCTTTTT-TTA ATTCTTCATTTCTAG TERM 2471 2156227 - 2156251 + T 100 -13 -5.71638 | opp_overlap 2156227, overlap 2156218 TCTAGATAATAAAAA GGCTTGATGA TTAAT TCATCAAGCC TTTTTTTAATTCTTC TERM 2472 2156251 - 2156227 - T 100 -13 -5.24796 | opp_overlap 2156218 2156227 TCTAGATAATAAAAA GGCTTGATGA TTAAT TCATCAAGCC TTTTTTTAATTCTTC upp 2156932 - 2156288 - | uracil phosphoribosyltransferase TERM 2473 2156816 - 2156796 - G 70 -8.3 -3.28924 | opp_overlap 2156796 2156795 2156800, overlap 2156800 GATGTTGCTTCATAA GTAAGTAGG CTA CCTACTTCC GTTGCTAATTCACGG TERM 2474 2158012 - 2157998 - g 78 -4.2 -5.18726 | overlap 2158003 TGGTTACAAGAAAAA GGTAAC GTT GATACC TACGAAATGTACCGC purM 2157140 - 2158180 + | phosphoribosylaminoimidazole synthetase TERM 2475 2158250 - 2158219 - f 89 -6.8 -5.72622 | gap 1, opp_overlap 2158224 TTCATAAAGAAAAAA TAAAAGGTGATC-AT TTA ATCGATCACCTTTTT TATAGCTATTATTTA TERM 2476 2158224 - 2158245 + F 85 -6.7 -5.30686 | gap 1, opp_overlap 2158219 AAAGAAAAAATAAAA GGTGATC-AT TTA ATCGATCACC TTTTTTATAGCTATT purN 2158304 - 2158945 + | phosphoribosylglycinamide formyltransferase 1 TERM 2477 2158977 - 2158956 - T 100 -10.9 -5.46276 | opp_overlap 2158956 AATAGATACAAAAAA GCCGCTTAA ATAA CTAAGCGGC TTTTTAAGTTCTATG TERM 2478 2158956 - 2158977 + T 100 -10.2 -4.79756 | opp_overlap 2158956 AATAGATACAAAAAA GCCGCTTA AATAAC TAAGCGGC TTTTTAAGTTCTATG yafJ 2159837 - 2159004 - | amidotransfease TERM 2479 2159900 - 2159865 - R 89 -9.2 -4.11216 | overlap 2159867 CCTTTATGCGCAAAA TAGCCTATCTCAATAT ATAA ATATCAAGATAGGCTG CAAGATAGATTATGC TERM 2480 2159898 - 2159867 - R 91 -11.8 -3.65542 | overlap 2159865 TTTATGCGCAAAATA GCCTATCTCAATAT ATAA ATATCAAGATAGGC TGCAAGATAGATTAT lpcA 2160491 - 2159910 - | phosphoheptose isomerase fadE 2160834 - 2163281 + | acyl coenzyme A dehydrogenase TERM 2481 2163299 - 2163326 + T 100 -14.3 -4.79826 | opp_overlap 2163299 CTTAAAATCAAAAAA GGCCAGAGTAA CTAACA TTACTCTGGCC TTTTTCATAATGTCT TERM 2482 2163326 - 2163299 - T 100 -15 -5.46698 | opp_overlap 2163299 CTTAAAATCAAAAAA GGCCAGAGTAAC TAAC ATTACTCTGGCC TTTTTCATAATGTCT VF_2638 2163526 - 2163350 - | hypothetical protein TERM 2483 2163439 - 2163454 + g 86 -7.6 -5.15167 | AACCTAATTCTTGAG CAGCTA CTGT TAGCTG TTTTTGTTCATGATG TERM 2484 2163675 - 2163661 - R 88 -7.8 -5.03945 | opp_overlap 2163661 TAATAATGAGAAAAA CCGCAA AAA CTGCGG TTTTAATCTTAACTA TERM 2485 2163661 - 2163675 + r 78 -7.1 -4.43681 | opp_overlap 2163661 TAATAATGAGAAAAA CCGCA AAAAC TGCGG TTTTAATCTTAACTA VF_1934 2164961 - 2163699 - | ferredoxin-dependent glutamate synthase TERM 2486 2164124 - 2164138 + g 83 -7.2 -4.68908 | TTTCTGACTGAGCTT GAGTAA TCG TTACTC TTTCTTTTGGATCAA dnaQ 2165703 - 2164972 - | DNA polymerase III subunit epsilon rnhA 2165741 - 2166214 + | ribonuclease H yafS 2166954 - 2166211 - | S-adenosyl-L-methionine-dependent methyltransferase TERM 2487 2166257 - 2166274 + g 82 -7.7 -4.58663 | opp_overlap 2166257 2166255 2166251 TGAGCAACAGAAATA GGAGCCA ACTT TGGCTTC TTTTTCCAAGCTGAT TERM 2488 2167472 - 2167459 - g 73 -2.3 -5.31877 | overlap 2167460 ACTCATTACAAAAAA TGGCA GCAT TGCCT GATGAAACTGAAGTC VF_1938 2167002 - 2167760 + | hydroxyacylglutathione hydrolase mltD 2167852 - 2169405 + | membrane-bound lytic murein transglycosylase D TERM 2489 2169926 - 2169903 - g 71 -6.8 -3.967 | overlap 2169906 AATGGACTAATGAAA TTACCAATGA CAGA TCATTGGTCA GCTTACGCTAGCTCT VF_1940 2169402 - 2170094 + | hypothetical protein yafD 2170941 - 2170075 - | hypothetical protein TERM 2490 2170121 - 2170149 + g 81 -7.5 -4.60797 | gap 1 AATGGATTATGATCA GAAGCGTGACTC TTTATC GAG-CGCGCTTC TTTTATATCTAACCC TERM 2491 2170952 - 2170969 + r 82 -9.9 -3.54382 | opp_overlap 2170926 2170952, overlap 2170948 TTCATAAACAGAAAA GGAGTGA CTCA TCACTCC TTCCTTCTATTAACA TERM 2492 2170969 - 2170952 - R 100 -9.9 -4.84918 | opp_overlap 2170952 2170948, overlap 2170926 TTCATAAACAGAAAA GGAGTGA CTCA TCACTCC TTCCTTCTATTAACA glnB 2171397 - 2171059 - | regulatory protein P-II for glutamine synthetase TERM 2493 2171491 - 2171472 - R 93 -7.1 -5.64873 | opp_overlap 2171472 TTCAATAATAAAAAA GCACCGC ATACCA GCAGTGC TTTAATTTATGATTT VF_1943 2171851 - 2171540 - | cytochrome c-554(548) TERM 2494 2171831 - 2171841 + g 81 -2.6 -5.64006 | TAATGCGATAACCGC TAAT CCA ATTA TTTTTTTCATTCCAT tilS 2173273 - 2171903 - | tRNA(Ile)-lysidine synthetase TERM 2495 2173152 - 2173180 + g 76 -4.5 -5.0133 | ACCATTGAATCAACG CCACCACTTAATG CGA CAATAAGATGTGG TTTTTTAACGGAATA TERM 2496 2173266 - 2173283 + g 77 -8.4 -3.8822 | opp_overlap 2173266 TCTTCCAATAAAAAA GCGAGC ACTCAG GCTCGC TTTCACTTTACTCTA TERM 2497 2173283 - 2173266 - G 95 -8.4 -5.4505 | opp_overlap 2173266 TCTTCCAATAAAAAA GCGAGC ACTCAG GCTCGC TTTCACTTTACTCTA accA 2174303 - 2173344 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha dnaE 2177834 - 2174355 - | DNA polymerase III subunit alpha TERM 2498 2177621 - 2177594 - G 70 -3.4 -4.98531 | CCGTTAAATTAAAAA GCTCATTGCCAA ACTC TTGGGATTGAAC TTTAAAGTCAGCACC rnhB 2178457 - 2177834 - | ribonuclease HII TERM 2499 2178345 - 2178331 - G 71 -6.4 -4.21908 | overlap 2178334 2178335 TATTAGGATCCAAAA TAACCG CAG CGGTCA CAACGGCTCCGACTA lpxB 2179613 - 2178462 - | lipid-A-disaccharide synthase TERM 2500 2179650 - 2179633 - R 93 -7.7 -5.64421 | opp_overlap 2179633 ACTCCAAATAAAAAA GGCCTAC ATGA ATAGGCC TTATATACTTTAACT lpxA 2180470 - 2179682 - | UDP-N-acetylglucosamine acyltransferase fabZ 2180925 - 2180473 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 2501 2181018 - 2181000 - R 100 -13.2 -5.09685 | opp_overlap 2180998 2180996 TAATAGATAGAAAAA GGTCTGCA AAA TGCAGACC AATACTTATTTATTA lpxD 2182072 - 2181053 - | UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase skp 2182596 - 2182081 - | periplasmic chaperone yaeT 2185100 - 2182671 - | outer membrane protein assembly factor YaeT TERM 2502 2183119 - 2183107 - G 70 -5.5 -4.41494 | GAGTTTGAACCAAAA CCACG TAG CGTAG TGAAGCCACCCGCAT TERM 2503 2185056 - 2185032 - G 71 -4.9 -4.48713 | GTCATCAATAACAAA TGTTTCTGCAC TGT GCGCTGCAACA CTGCCAAACAGCAGT rseP 2186488 - 2185130 - | membrane-associated zinc protease (RseP, YaeL) dxr 2187693 - 2186491 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2504 2187750 - 2187729 - R 100 -9.5 -5.14985 | TTAAAGATAGAAAAA CGGCAGATA ATCC TATCTACCG CATAACTTAAAAATG TERM 2505 2187771 - 2187790 + r 72 -9.4 -2.63596 | opp_overlap 2187768 CTTAAAAATGGATAT GGTATTTG TCGT CAAATACC TAATATCAGCTAGAA cdsA 2188579 - 2187800 - | CDP-diglyceride synthase ispU 2189416 - 2188643 - | undecaprenyl pyrophosphate synthase TERM 2506 2188870 - 2188882 + g 70 -7.7 -3.65902 | opp_overlap 2188869 2188870 CCACTTCAGGCAAAT CTGAC ATA GTCAG TTTAGATGCGATAAG TERM 2507 2189460 - 2189438 - R 85 -6.3 -5.26119 | gap 1, opp_overlap 2189438 CCCTTAAAAATAAAA GCGCT-GATG TCTC CACCCAGCGC TTCTTATGGTGTTCG frr 2190095 - 2189538 - | ribosome recycling factor pyrH 2190862 - 2190131 - | uridylate kinase TERM 2508 2190989 - 2190969 - R 100 -11.1 -4.88067 | opp_overlap 2190969 2190967 AGCTATTCACAAAAA GACCGCAGC ATA GCCACGGTC TCTTTCAGTTACAAT tsf 2191860 - 2191015 - | elongation factor Ts TERM 2509 2191919 - 2191896 - R 100 -9.5 -4.65895 | opp_overlap 2191893, overlap 2191897 TGGTGGAGTTAAAAA TCAGGGGCC AAATTG GGCCCCTGC TAACTATTTCAGTTT TERM 2510 2191918 - 2191897 - R 93 -13 -3.39216 | opp_overlap 2191893, overlap 2191896 GGTGGAGTTAAAAAT CAGGGGCC AAATTG GGCCCCTG CTAACTATTTCAGTT rpsB 2192722 - 2191994 - | 30S ribosomal protein S2 TERM 2511 2192278 - 2192293 + g 83 -7.6 -4.70659 | TGTTTTTGATACCGC CTAGAG ATTT CTCTAG TTTTTCCATATCACG map 2193082 - 2193909 + | methionine aminopeptidase TERM 2512 2193925 - 2193944 + F 95 -8.6 -5.60993 | opp_overlap 2193925 CAAATCGCAAATAAA CAGAAGGC TTCG GTCTTCTG TTTTTTTATCAGCAA TERM 2513 2193944 - 2193925 - f 76 -6.4 -4.4784 | opp_overlap 2193925 CAAATCGCAAATAAA CAGAAGGC TTCG GTCTTCTG TTTTTTTATCAGCAA TERM 2514 2194536 - 2194526 - g 76 -2.4 -5.49569 | overlap 2194527 GACGAACAGAAAAAA CGTC ACA GCCG TTACCATGACACTAC TERM 2515 2196548 - 2196536 - g 84 -7.7 -4.77036 | CTTGACGACGAAAAA CAAGC AGA GCTTG AATTAGCCTTAGTTA glnD 2193968 - 2196589 + | PII uridylyl-transferase TERM 2516 2196636 - 2196612 - f 100 -11.5 -4.35353 | opp_overlap 2196610 2196609, overlap 2196609 AACTAAAAACAATAA GTGGGATGGAT AAG ATCTATCCCAC AACTTTCATTCACAG yaeH 2196729 - 2197109 + | hypothetical protein TERM 2517 2197119 - 2197160 + T 83 -11.3 -2.71364 | gap 1, opp_overlap 2197123 2197132, overlap 2197122 2197132 CTTTAAAGCTTTTAG TAGACATAAAAAATGGACCA TAA TGGTCCATTTTTTAT-TATA TAGTTAACAAAATAC TERM 2518 2197122 - 2197158 + T 81 -11.1 -2.90194 | opp_overlap 2197123 2197132, overlap 2197119 2197132 TAAAGCTTTTAGTAG ACATAAAAAATGGACCA TAA TGGTCCATTTTTTATTA TATAGTTAACAAAAT TERM 2519 2197157 - 2197123 - T 95 -14.6 -2.79312 | opp_overlap 2197122 2197119 2197132, overlap 2197132 AAAGCTTTTAGTAGA CATAAAAAATGGACCA TAA TGGTCCATTTTTTATT ATATAGTTAACAAAA TERM 2520 2197132 - 2197148 + T 100 -10.9 -5.60689 | opp_overlap 2197123 2197132, overlap 2197122 2197119 AGTAGACATAAAAAA TGGACCA TAA TGGTCCA TTTTTTATTATATAG TERM 2521 2197148 - 2197132 - T 100 -10.9 -5.43414 | opp_overlap 2197132 2197122 2197119, overlap 2197123 AGTAGACATAAAAAA TGGACCA TAA TGGTCCA TTTTTTATTATATAG secF 2198128 - 2197178 - | preprotein translocase subunit SecF secD 2199997 - 2198141 - | preprotein translocase subunit SecD TERM 2522 2200044 - 2200019 - R 100 -12.7 -4.8622 | opp_overlap 2200018 2200017 GTCCTTAACGAAAAA TACCCCCTAAC CGAA GTTAGAGGGTA CAATTTTTATAGTGA yajC 2200386 - 2200051 - | preprotein translocase subunit YajC tgt 2201608 - 2200481 - | queuine tRNA-ribosyltransferase queA 2202874 - 2201822 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 2523 2202335 - 2202359 + g 87 -6.3 -5.18726 | opp_overlap 2202331, overlap 2202337 AAAGTGTAAACCAGC GGTTGGAGCTG CTA CAGCACCAGGC TTTTTGTTATAAACC TERM 2524 2202990 - 2202973 - H 73 -4.1 -5.0133 | overlap 2202975 CACTTTTTCAAAAAA TAGGTCA AAAT TGACCTC AAACAGAGAAAGTTT TERM 2525 2202988 - 2202975 - H 71 -6.7 -4.13561 | overlap 2202973 CTTTTTCAAAAAATA GGTCA AAAT TGACC TCAAACAGAGAAAGT VF_1971 2203107 - 2203550 + | acetoin utilization AcuB protein TERM 2526 2203582 - 2203565 - T 88 -7 -4.89966 | ACAGCCAAAAAGAAA GGGAGA CTCCAT TCTCCC TTCAAATCCAGCTAG aceA 2204959 - 2203631 - | isocitrate lyase TERM 2527 2203956 - 2203967 + g 74 -4.4 -4.8543 | AATTTCGCAATCGTC TCTG AATC CAGA TTTTTCTCCCAGTTA aceB 2206578 - 2204974 - | malate synthase TERM 2528 2205220 - 2205232 + g 70 -9.1 -3.16676 | overlap 2205218 CGTTCGTGATATTTC TGCGG TAG CCGCA TCTTCCATTAATCCG TERM 2529 2207106 - 2207135 + r 87 -10.9 -3.48772 | opp_overlap 2207106 ATTCAAAAGTAGAAA GGCGACTATTTAT AAAA ATAAATAATCGCC TTGTATCAAGAAATT TERM 2530 2207135 - 2207106 - R 100 -13.1 -4.21402 | opp_overlap 2207106 ATTCAAAAGTAGAAA GGCGACTATTTAT AAAA ATAAATAATCGCC TTGTATCAAGAAATT VF_1974 2208052 - 2207153 - | hydrogen peroxide-inducible genes activator, LysR family TERM 2531 2208171 - 2208153 - H 71 -3.1 -5.0917 | opp_overlap 2208153, overlap 2208154 TTATGAAAAAACAAA GCCAAAC AAGAA GTTTGGA TATCTAACTTTTTAG ahpC 2208198 - 2208806 + | alkyl hydroperoxide reductase, C22 subunit TERM 2532 2208925 - 2208956 + F 100 -13.2 -4.64861 | opp_overlap 2208930, overlap 2208930 AAGTTTGCCTAATAC TAAAAGCCCTAAAG TTAT CTTTAGGGCTTTTC TTTGTTTTCAGCAAA TERM 2533 2208951 - 2208930 - f 100 -13.1 -4.4261 | opp_overlap 2208925 2208930 TGCCTAATACTAAAA GCCCTAAAG TTAT CTTTAGGGC TTTTCTTTGTTTTCA TERM 2534 2208930 - 2208951 + F 100 -13.1 -5.26247 | opp_overlap 2208930, overlap 2208925 TGCCTAATACTAAAA GCCCTAAAG TTAT CTTTAGGGC TTTTCTTTGTTTTCA TERM 2535 2209395 - 2209378 - g 71 -6.3 -4.25104 | TTTGGCGTATTAAAA GCCAATG GCGA CATTGAC ATGCCACTTTCAGCT cutC 2209087 - 2209830 + | copper homeostasis protein TERM 2536 2209869 - 2209834 - T 100 -12.1 -5.54907 | opp_overlap 2209841, overlap 2209841 CGCATAAAATAAAAA TAAAAAAGCCAGAGT ACAAAA ACTCTGGCTTTTATA AGTAAAATAACGAGT TERM 2537 2209841 - 2209862 + T 100 -10.2 -4.42653 | opp_overlap 2209834 2209841 AATAAAAATAAAAAA GCCAGAGT ACAAAA ACTCTGGC TTTTATAAGTAAAAT TERM 2538 2209862 - 2209841 - T 100 -10.2 -6.01725 | opp_overlap 2209841, overlap 2209834 AATAAAAATAAAAAA GCCAGAGT ACAAAA ACTCTGGC TTTTATAAGTAAAAT VF_1977 2210249 - 2209887 - | hypothetical protein VF_1978 2210941 - 2210306 - | accessory colonization factor AcfA-like protein VF_1979 2211249 - 2212178 + | LysR family transcriptional regulator TERM 2539 2212384 - 2212407 + F 91 -5.3 -5.9003 | CCGTTAGGTAACTTC GCCTCTG TTCTCTCATC CAGAGGC TTTTTTTATTCATTT VF_1980 2212697 - 2213206 + | hypothetical protein TERM 2540 2213401 - 2213424 + T 100 -15.4 -5.38326 | opp_overlap 2213401 TATTAGATACAAAAA TGGCGCTGTT TTTA AACAGCGCCA TTTTTATTTAATTAG TERM 2541 2213424 - 2213401 - T 100 -15.4 -5.05601 | opp_overlap 2213401 TATTAGATACAAAAA TGGCGCTGTT TTTA AACAGCGCCA TTTTTATTTAATTAG VF_1981 2214013 - 2213453 - | hypothetical protein phoU 2214900 - 2214202 - | transcriptional regulator PhoU pstB 2215758 - 2214940 - | phosphate transporter ATP-binding subunit TERM 2542 2215015 - 2214999 - G 71 -3.7 -4.93365 | opp_overlap 2214999 TTGGAGAAGTAAAAA TGGTATT TGC ATTACCA TATTCCACTAACTTC pstA 2217298 - 2215763 - | phosphate transport system permease protein PstA pstC 2219516 - 2217309 - | phosphate transport system permease protein PstC pstS 2220615 - 2219626 - | phosphate-binding protein phoR 2221925 - 2220630 - | phosphate regulon sensor protein TERM 2543 2220894 - 2220876 - G 70 -9 -3.10715 | opp_overlap 2220875 2220872 CTCAGCACCACTGAA TGTTGATT GCC AATCAACA ATAATTTCAGCACCA TERM 2544 2220973 - 2221012 + g 74 -5.2 -4.68612 | CGTAATTGATCTTCA TCACCTTTAACTTTGA GATTATGA TCAACATTAAAGGTGA TTTTATGATTTCTTT phoB 2222644 - 2221952 - | DNA-binding response regulator in two-component regulatory system with PhoR TERM 2545 2222559 - 2222569 + g 75 -5.4 -4.82667 | TCTTCTGCTTCGATA GGTT CAT AACC TTTTTGCTCTAGTAC rdgC 2222856 - 2223770 + | recombination associated protein TERM 2546 2223816 - 2223773 - f 76 -6.6 -4.5394 | opp_overlap 2223776, overlap 2223767 2223774 2223776 AGAGAAAGAGTAAAA GCAGGGTTCAGGTCGGATCG CAAG CGAAGCGACCTGAAACCTTT CTTTATACCCTAGCA TERM 2547 2223815 - 2223774 - f 79 -10.1 -3.30737 | opp_overlap 2223776, overlap 2223773 2223767 2223776 GAGAAAGAGTAAAAG CAGGGTTCAGGTCGGATCG CAAG CGAAGCGACCTGAAACCTT TCTTTATACCCTAGC TERM 2548 2223813 - 2223776 - f 91 -12.7 -3.19995 | opp_overlap 2223776, overlap 2223774 2223773 2223767 GAAAGAGTAAAAGCA GGGTTCAGGTCGGATCG CAAG CGAAGCGACCTGAAACC TTTCTTTATACCCTA TERM 2549 2223776 - 2223813 + F 100 -12.7 -4.56367 | opp_overlap 2223774 2223773 2223767 2223776 GAAAGAGTAAAAGCA GGGTTCAGGTCGGATCG CAAG CGAAGCGACCTGAAACC TTTCTTTATACCCTA yegQ 2223925 - 2225313 + | peptidase yfhL 2225317 - 2225571 + | 4Fe-4S cluster-containing protein TERM 2550 2225602 - 2225629 + T 100 -12.8 -4.9725 | opp_overlap 2225602 TGAACCAAATAAAAA TGCCCAGCGATA TCAC TATCTCTGGGCA TTTTTCTATCAGGCT TERM 2551 2225629 - 2225602 - T 100 -12.8 -5.38326 | opp_overlap 2225602 TGAACCAAATAAAAA TGCCCAGCGATA TCAC TATCTCTGGGCA TTTTTCTATCAGGCT VF_1992 2226747 - 2225653 - | hypothetical protein TERM 2552 2226868 - 2226897 + r 100 -12.3 -4.93696 | opp_overlap 2226868 GTAAGTATAAAAAAA GAGCAATGATACT GACT AGCATCATTGCTC TTTTTAGTATTTAAC TERM 2553 2226897 - 2226868 - R 100 -14.5 -5.71983 | opp_overlap 2226868 GTAAGTATAAAAAAA GAGCAATGATACT GACT AGCATCATTGCTC TTTTTAGTATTTAAC dnaJ 2228064 - 2226925 - | chaperone Hsp40/DnaJ, co-chaperone with DnaK TERM 2554 2228239 - 2228276 + r 75 -8.3 -3.7398 | opp_overlap 2228240 2228241, overlap 2228237 2228241 AGGTTGATATTACAA ACTTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAATA TATTTTCCATTCGAA TERM 2555 2228275 - 2228240 - R 100 -14 -4.0162 | opp_overlap 2228239 2228237 2228241, overlap 2228241 GGTTGATATTACAAA CTTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAAT ATATTTTCCATTCGA TERM 2556 2228274 - 2228241 - R 100 -17.5 -3.00651 | opp_overlap 2228239 2228237 2228241, overlap 2228240 GTTGATATTACAAAC TTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAA TATATTTTCCATTCG TERM 2557 2228241 - 2228274 + r 100 -15.3 -3.44792 | opp_overlap 2228241 2228240, overlap 2228239 2228237 GTTGATATTACAAAC TTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAA TATATTTTCCATTCG TERM 2558 2228436 - 2228453 + r 71 -5.6 -4.56133 | overlap 2228429 ATTAACCCTTCTAGC GACAAG AAATTA CTTGTC TTTTACTTCTTCGAA dnaK 2230349 - 2228445 - | molecular chaperone DnaK TERM 2559 2230536 - 2230517 - R 100 -8.6 -6.09888 | TCTGAACAAAAAAAA GCCTAACA ATCA TGTCAGGC TCAATCATTCTAGAT VF_1995 2231529 - 2230570 - | hypothetical protein TERM 2560 2231720 - 2231699 - R 100 -10.1 -6.18768 | opp_overlap 2231699 AAAAGACAAAAAAAA GCGATCCCG AACT CGGAACCGC TTGATTTTTAATCAT grpE 2232342 - 2231758 - | heat shock protein nadK 2232511 - 2233404 + | inorganic polyphosphate/ATP-NAD kinase TERM 2561 2233446 - 2233487 + F 100 -11.1 -4.98616 | opp_overlap 2233443 2233457 2233461 2233463, overlap 2233448 AATTTAAATTCACTT TACTGTATAAAGAAACAGT ATAT ACTGTGTCTATATACAGTG TTTTTCGTATTTTAA TERM 2562 2233448 - 2233485 + F 100 -11.5 -4.09348 | opp_overlap 2233443 2233457 2233461 2233463, overlap 2233446 TTTAAATTCACTTTA CTGTATAAAGAAACAGT ATAT ACTGTGTCTATATACAG TGTTTTTCGTATTTT TERM 2563 2234601 - 2234587 - g 74 -6.4 -4.38092 | GAAGAACTAAAACAA CACTTC TTA GAAGCG GCACATAAGTTAACG recN 2233522 - 2235189 + | recombination and repair protein TERM 2564 2235221 - 2235246 + F 100 -9.2 -5.14965 | opp_overlap 2235221 TTATCGACTCAAAAA GCCAATATTA TTTTAT TAATATTGGC TTTTTTAATGAAAGT TERM 2565 2235246 - 2235221 - f 100 -9.2 -4.67353 | opp_overlap 2235221 TTATCGACTCAAAAA GCCAATATTA TTTTAT TAATATTGGC TTTTTTAATGAAAGT VF_1999 2235405 - 2235761 + | small protein A TERM 2566 2235792 - 2235816 + T 100 -12.9 -5.92399 | opp_overlap 2235792 TCAAACACAAAAAAA CCGGATCTCGT TTA ACGAAATCCGG TTTTTTATTTTCTTA TERM 2567 2235816 - 2235792 - T 100 -15.1 -5.88197 | opp_overlap 2235792 TCAAACACAAAAAAA CCGGATCTCGT TTA ACGAAATCCGG TTTTTTATTTTCTTA TERM 2568 2235822 - 2235844 + T 83 -5 -5.43866 | overlap 2235825 CGAAATCCGGTTTTT TATTTTCTTA AAC TAAGAAATTA TTTTTTTGCCGCTTC TERM 2569 2235825 - 2235841 + T 80 -6.7 -4.79949 | overlap 2235822 AATCCGGTTTTTTAT TTTCTTA AAC TAAGAAA TTATTTTTTTGCCGC yfjF 2236153 - 2235842 - | hypothetical protein yfjG 2236577 - 2236140 - | hypothetical protein TERM 2570 2237297 - 2237279 - g 89 -6.7 -5.22039 | GCTAAAGGTAAAAAA CTGCACG ATAAA CGTACAG ATTCAAAAGAAAAAG smpB 2236874 - 2237359 + | SsrA-binding protein TERM 2571 2237376 - 2237415 + T 76 -9.6 -2.78463 | gap 1, opp_overlap 2237369, overlap 2237381 TTCAACCAGTTAGAT TGATACTAACTAGACAGAC GCT GTTTTTCT-GTTAGTATCA TCTGGTAACAAAACT TERM 2572 2237533 - 2237518 - T 77 -3.2 -5.4477 | overlap 2237520 AAAGCCGCAAAAAAA TAGTCG CAAA CGACGA AAACTACGCACTAGC TERM 2573 2237531 - 2237520 - T 72 -5.8 -4.35085 | overlap 2237518 AGCCGCAAAAAAATA GTCG CAAA CGAC GAAAACTACGCACTA TERM 2574 2237807 - 2237832 + T 100 -14.1 -5.1166 | opp_overlap 2237807 CTCCACCAATTTAAA CCCCTGTAATC AATA GGTTACAGGGG TTTTTCGTTTTAATG TERM 2575 2237832 - 2237807 - T 91 -11.9 -3.78329 | opp_overlap 2237807 CTCCACCAATTTAAA CCCCTGTAATC AATA GGTTACAGGGG TTTTTCGTTTTAATG VF_2003 2238534 - 2237986 - | hypothetical protein TERM 2576 2238719 - 2238705 - R 100 -10 -5.65177 | opp_overlap 2238718, overlap 2238708 ATACGCATAAAAAAA CCAGCA AGA TGCTGG CGATATACGCCTTGT TERM 2577 2238849 - 2238885 + r 75 -9.6 -2.52676 | gap 2, overlap 2238839 GTGTGTTTTTGATGA CTCC--CCGAGGTACTCA AAT TGAGTACCTCGGAAGGAA TCACTTAAAAAACTC TERM 2578 2239037 - 2239091 + r 81 -9.7 -3.42996 | opp_overlap 2239046 2239049 2239051, overlap 2239047 2239051 CTGTTCAGTTCACCT TTGTACT-AATTATACTGAGACGGTCA ATT TGACCGTCTCAGTA-ACTTCAGTGAAA TTCTAATAACTCATG TERM 2579 2239081 - 2239046 - R 87 -12.8 -3.14564 | gap 1, opp_overlap 2239037 2239047 2239051, overlap 2239049 2239051 TCACCTTTGTACTAA TTATACTGAGACGGTCA ATT TGACCGTCTCAGTA-AC TTCAGTGAAATTCTA TERM 2580 2239047 - 2239081 + r 93 -14.4 -3.08471 | opp_overlap 2239046 2239049 2239051, overlap 2239037 2239051 CACCTTTGTACTAAT TATACTGAGACGGTCA ATT TGACCGTCTCAGTAAC TTCAGTGAAATTCTA TERM 2581 2239079 - 2239049 - R 100 -21.4 -2.77899 | opp_overlap 2239047 2239037 2239051, overlap 2239046 2239051 CCTTTGTACTAATTA TACTGAGACGGTCA ATT TGACCGTCTCAGTA ACTTCAGTGAAATTC TERM 2582 2239077 - 2239051 - R 100 -19.6 -2.93723 | opp_overlap 2239047 2239037 2239051, overlap 2239049 2239046 TTTGTACTAATTATA CTGAGACGGTCA ATT TGACCGTCTCAG TAACTTCAGTGAAAT TERM 2583 2239051 - 2239077 + r 100 -19.6 -2.55015 | opp_overlap 2239051 2239049 2239046, overlap 2239047 2239037 TTTGTACTAATTATA CTGAGACGGTCA ATT TGACCGTCTCAG TAACTTCAGTGAAAT VF_2004 2240980 - 2239094 - | hypothetical protein TERM 2584 2241011 - 2241027 + r 75 -8 -3.7732 | opp_overlap 2241011 GTAGATATAAAAAAA GAGAGC TAAGT GCTCTC TTGTTGGTGTCGAAC TERM 2585 2241027 - 2241011 - R 93 -8 -5.76633 | opp_overlap 2241011 GTAGATATAAAAAAA GAGAGC TAAGT GCTCTC TTGTTGGTGTCGAAC VF_2005 2241425 - 2241156 - | putative phage tail protein VF_2006 2242125 - 2241418 - | putative phage R protein VF_2007 2242507 - 2242142 - | hypothetical protein VF_2008 2243666 - 2242533 - | tail sheath protein VF_2640 2243833 - 2243666 - | hypothetical protein VF_2009 2244355 - 2243834 - | hypothetical protein VF_2010 2244819 - 2244346 - | hypothetical protein VF_2011 2245268 - 2244819 - | hypothetical protein VF_2012 2246414 - 2245380 - | major capsid protein TERM 2586 2246362 - 2246372 + g 73 -2.4 -5.252 | GATACGTTATTTGAT GCAG CAA CGGC TTTTTTATAACCCTC VF_2013 2247289 - 2246477 - | capsid scaffolding protein VF_2014 2247421 - 2249187 + | terminase, ATPase subunit VF_2015 2249229 - 2250170 + | capsid portal protein TERM 2587 2250248 - 2250222 - T 82 -8.7 -3.98378 | gap 1, opp_overlap 2250222 GATATTGAATAATAA CCGCTCTTGTCC ATTT GG-CATGAGCGG TTTTTTCTATTGTTG TERM 2588 2250222 - 2250248 + T 100 -10.1 -5.55695 | opp_overlap 2250222 GATATTGAATAATAA CCGCTCTTGTC CATTT GGCATGAGCGG TTTTTTCTATTGTTG VF_2016 2250667 - 2250317 - | hypothetical protein VF_2641 2250881 - 2250669 - | hypothetical protein VF_2017 2251264 - 2250875 - | L-alanyl-D-glutamate peptidase VF_2018 2251499 - 2251266 - | hypothetical protein TERM 2589 2251609 - 2251592 - R 74 -6.2 -4.51196 | TCCAAATGTAGAAAA CCCCGC ACAATG GCAGGG CTTGGTGGGAGAGAT VF_2019 2252090 - 2251635 - | hypothetical protein VF_2020 2253436 - 2252090 - | putative phage tail protein TERM 2590 2253250 - 2253232 - G 81 -6.7 -4.78107 | TATCACCATCAAAAA CAGCCTC GCCAT GAAGCTG GCCGTTACCGTTATC VF_2021 2253675 - 2253433 - | hypothetical protein VF_2642 2253905 - 2253690 - | hypothetical protein VF_2022 2254939 - 2253887 - | phage protein VF_2023 2255322 - 2254936 - | phage protein VF_2024 2255516 - 2255319 - | hypothetical protein VF_2025 2256028 - 2255519 - | putative phage baseplate assembly protein VF_2026 2256965 - 2256021 - | putative phage tail protein TERM 2591 2256114 - 2256134 + g 75 -2.6 -5.26316 | TAATGACTTAACTAG CAGCATTT CATTA AAATTCTG TTTTTTATCAACTAC VF_2027 2258197 - 2256962 - | hypothetical protein TERM 2592 2258510 - 2258493 - R 81 -9.1 -3.74251 | opp_overlap 2258493 GATATTGGGATTAAA GCGGCCA CGAC TGACCGC TCTATGATTAGGATT VF_2028 2259173 - 2258760 - | hypothetical protein TERM 2593 2258820 - 2258855 + g 75 -2.8 -5.24531 | gap 1, overlap 2258826 2258827 CTTAATAATTTCTTT TATATCTGCATCTAAAT TAT ATTTATATGC-GTTATA TTTTTTATGAGCCGT VF_2029 2260089 - 2259175 - | hypothetical protein VF_2030 2260729 - 2260175 - | exodeoxyribonuclease VIII TERM 2594 2260362 - 2260352 - G 82 -8.2 -4.49981 | overlap 2260353 CATATCATTATAAAA CGCC CAA GGCG CATCCATATTTAAGC VF_2643 2260946 - 2260740 - | hypothetical protein VF_2031 2263076 - 2260956 - | hypothetical protein TERM 2595 2263033 - 2263018 - G 85 -6.8 -5.15969 | TTTGAACCTAAAAAA CCCGCT CGAA AGCAGG CATCATTTTTCTTTG VF_2032 2263440 - 2263105 - | hypothetical protein VF_2033 2263982 - 2263752 - | hypothetical protein VF_2644 2264213 - 2263986 - | hypothetical protein VF_2645 2264344 - 2264216 - | hypothetical protein VF_2034 2264745 - 2264344 - | hypothetical protein VF_2035 2265212 - 2264742 - | hypothetical protein VF_2036 2265756 - 2265223 - | phage regulatory protein (CII) VF_2646 2265987 - 2265784 - | hypothetical protein VF_2647 2266188 - 2266003 - | Cro/CI family transcriptional regulator-related protein TERM 2596 2266218 - 2266253 + H 91 -12.1 -3.69094 | opp_overlap 2266211, overlap 2266241 TCAGGTAAGTACCTG GTGATTTAACTCACC AAATAC GGTTAGTTAAATCAC TTTAACTGGTGAGTT VF_2037 2266340 - 2266987 + | Cro/Cl family transcriptional regulator VF_2648 2267022 - 2267303 + | hypothetical protein TERM 2597 2267401 - 2267383 - g 79 -3.1 -5.39681 | ACAATCAAAGAAAAA TGGTAGC GGAGA ACCACCA ATGACAACACTAGAA VF_2038 2267315 - 2267656 + | hypothetical protein TERM 2598 2267632 - 2267643 + F 84 -3.6 -5.66868 | GGTTGGAGTTGCGAT CGCG GTTA TGCG TTTTTTTCCTTAATT VF_2039 2267703 - 2268884 + | hypothetical protein VF_2040 2268871 - 2269221 + | hypothetical protein TERM 2599 2269242 - 2269254 + G 76 -3.3 -5.1963 | CTTTTTCAATCAATT CCCTT TGA ATGGG TTTTTATTACTTGGG TERM 2600 2269499 - 2269460 - g 73 -7.4 -4.04394 | gap 1, opp_overlap 2269464, overlap 2269464 GTTAAAGCAATTAAA TAAATTAGCATC-GATAGA GCT TCTTTCTGATGCTGATTTA AATCCGTTACACAAC VF_2649 2269218 - 2269823 + | hypothetical protein TERM 2601 2269843 - 2269866 + F 82 -9.6 -3.54424 | opp_overlap 2269843 CGTCTTCACAAACAA TGCTGCCC TAATAACC GGGCAGCA TTTACACAACTCAAA TERM 2602 2269866 - 2269843 - f 87 -9.6 -4.06419 | opp_overlap 2269843 CGTCTTCACAAACAA TGCTGCCC TAATAACC GGGCAGCA TTTACACAACTCAAA VF_2041 2269891 - 2270868 + | DNA integration/recombination/invertion protein TERM 2603 2271030 - 2271007 - f 100 -11 -4.10453 | opp_overlap 2271007, overlap 2270997 CAAACGTTTGGAAAA GCCCAACTTC AAAA GAGGTTGGGC TTTTTTGTATCTGTA TERM 2604 2271007 - 2271030 + F 100 -13.2 -5.4492 | opp_overlap 2270997 2271007 CAAACGTTTGGAAAA GCCCAACTTC AAAA GAGGTTGGGC TTTTTTGTATCTGTA TERM 2605 2272247 - 2272227 - g 82 -6.2 -4.84761 | opp_overlap 2272227 ACACTCTTAGAAAAA CCATTGAA GTGAT TTCAACGG TATCTAAGCAAATTG TERM 2606 2272546 - 2272521 - g 73 -5.6 -4.49781 | gap 1 AAAACACTCATAAAA TTGGTCAATCA AGTCG TGATTG-CCAA GAAGGTATTTCATTA VF_2042 2271197 - 2272825 + | methyl-accepting chemotaxis protein TERM 2607 2272883 - 2272852 - f 74 -6.6 -4.2828 | gap 1, opp_overlap 2272856, overlap 2272856 TTTCACTTATGAAAA TTAAGCCCAAC-CGA TTA TCGAGTTGGGCTTTT TTCATCTCACCCTAC TERM 2608 2272856 - 2272879 + F 100 -11.8 -5.21709 | gap 1, opp_overlap 2272852 2272856 ACTTATGAAAATTAA GCCCAAC-CGA TTA TCGAGTTGGGC TTTTTTCATCTCACC TERM 2609 2272879 - 2272856 - f 91 -11.8 -3.72073 | gap 1, opp_overlap 2272856, overlap 2272852 ACTTATGAAAATTAA GCCCAAC-CGA TTA TCGAGTTGGGC TTTTTTCATCTCACC malE2 2273248 - 2274381 + | maltose/maltodextrin-binding protein TERM 2610 2274407 - 2274439 + F 72 -9.3 -2.65112 | gap 1, opp_overlap 2274429, overlap 2274410 TCAACGTACCAACCT CAACGGTGTCCCTA TTAAAT TAGGG-CATCGTTG TCCTCTAAATCCGTT malF2 2274494 - 2275792 + | maltose transport system permease protein MalF malG2 2275792 - 2276706 + | maltose transport system permease protein MalG malK2 2276706 - 2277842 + | maltose/maltodextrin transport ATP-binding protein MalK2 TERM 2611 2277857 - 2277894 + F 80 -9.3 -3.64283 | gap 1, opp_overlap 2277856 ATGGATCCCATAACC CTTCCCTC-TTGCGTC ACATTAC GACGTAGTGAGGGAAG TTCTTCACAAATTTC VF_2047 2277973 - 2278557 + | hypothetical protein TERM 2612 2278601 - 2278575 - f 87 -12.4 -3.06831 | overlap 2278564 CCAATCGCTATTTAA CTTATTGGCCTA TCA TAGGCCAAAAAG GCACAAGCTAGCCGA VF_2048 2278647 - 2280614 + | amylo-1,6-glucosidase malZ 2280648 - 2282480 + | maltodextrin glucosidase TERM 2613 2282624 - 2282589 - g 89 -9.9 -4.16251 | gap 1, overlap 2282597 ATACAAGTTGCAAAA GCACAAAATGTTACGC AAGCA GCG-AACACCTTGTGC TTAAGCCAACCGACG VF_2051 2282550 - 2283485 + | LysR family transcriptional regulator TERM 2614 2283475 - 2283461 - T 80 -6.4 -4.72201 | GCTCATAAAAAACAA CCCTCA AAT TAAGGG CAAAGAATAGAAACA TERM 2615 2283519 - 2283496 - T 74 -5.3 -4.66814 | opp_overlap 2283496 AATAGAAACAATAAA GCCCAGA GCAGTACATA TCTGGGC TTTTACTAGATTAAC VF_2052 2284156 - 2283530 - | magnesium transporter MgtE VF_2053 2284525 - 2285574 + | hypothetical protein TERM 2616 2285602 - 2285624 + G 95 -12.1 -4.19953 | opp_overlap 2285604 CGTTTGTAATTGGAA CACTGCTGA CTTGT TCAGCAGTG TTTTACCATTGGATA VF_2054 2285574 - 2286647 + | hypothetical protein TERM 2617 2286647 - 2286674 + T 77 -10 -2.97667 | opp_overlap 2286652, overlap 2286652 GATCGCCCACCAATA AAAAAGGAGATC GTAC GATCTCCTTTTA TCATTTAATGAATCC TERM 2618 2286669 - 2286652 - T 100 -9.9 -5.5112 | opp_overlap 2286647 2286652 CCCACCAATAAAAAA GGAGATC GTAC GATCTCC TTTTATCATTTAATG TERM 2619 2286652 - 2286669 + T 100 -9.9 -4.63172 | opp_overlap 2286652, overlap 2286647 CCCACCAATAAAAAA GGAGATC GTAC GATCTCC TTTTATCATTTAATG yhjA 2288079 - 2286694 - | cytochrome C peroxidase TERM 2620 2288328 - 2288362 + r 85 -8.6 -4.14927 | opp_overlap 2288330, overlap 2288330 CTAAAAATACACAAA AAGCCCATGATATGCA TAT TACACATCATGGGCTC TTCTATTTTATTTGT TERM 2621 2288330 - 2288360 + r 90 -11.2 -3.63424 | opp_overlap 2288330, overlap 2288328 AAAAATACACAAAAA GCCCATGATATGCA TAT TACACATCATGGGC TCTTCTATTTTATTT TERM 2622 2288360 - 2288330 - R 100 -15.6 -5.20633 | opp_overlap 2288330 2288328 AAAAATACACAAAAA GCCCATGATATGCA TAT TACACATCATGGGC TCTTCTATTTTATTT pdxY 2289266 - 2288397 - | pyridoxal kinase 2/pyridoxine kinase cadA 2291481 - 2289343 - | lysine decarboxylase 1 TERM 2623 2289672 - 2289717 + g 77 -8.4 -3.84674 | opp_overlap 2289681, overlap 2289712 CTTTAAACATCAGTT CTGGTAAACGGTATTTACGA GTTAAA TCGTGAATGCCTTGTGCCAG TTCTTGTACTCGCAT cadB 2292936 - 2291602 - | lysine/cadaverine antiporter TERM 2624 2293330 - 2293320 - H 74 -5.4 -4.82162 | opp_overlap 2293320 TATAAGAATATAAAA CCAA TTT TTGG TGCTTAACTTCTTAT TERM 2625 2295044 - 2295032 - g 85 -9.1 -4.21194 | CTTGATGATTTAAAA GGTGC GTG GCACC CAAAGAAAAAACAAC VF_2059 2293595 - 2295064 + | sodium-linked D-alanine glycine permease TERM 2626 2295114 - 2295090 - T 100 -16.5 -5.49729 | opp_overlap 2295090 AATTAGTTAAAAAAA GCCCGTCGAAC TAA ATTCGACGGGC TTTTTTATTACACCA TERM 2627 2295090 - 2295114 + T 100 -15.8 -5.4505 | opp_overlap 2295090 AATTAGTTAAAAAAA GCCCGTCGAA CTAAA TTCGACGGGC TTTTTTATTACACCA cadC 2296782 - 2295157 - | DNA-binding transcriptional activator CadC TERM 2628 2295660 - 2295670 + g 85 -4 -5.54894 | overlap 2295665 CTAACAGATCTATCC CTTT TTC AAAG TTTTTTTGATCCGTT TERM 2629 2296229 - 2296207 - G 87 -4.8 -5.37345 | overlap 2296221 GCCAACGAGAAAAAA GTCGAACGCT AAT AGCTTCCAAC GATGTAAAAAGCTAA TERM 2630 2297283 - 2297264 - R 93 -7.8 -5.76237 | opp_overlap 2297264 2297282 GATAGAAATAAAAAA GGCCAACC ATGT GGTCAGCC TTTTTAAAAACGGAT VF_2061 2297730 - 2297305 - | hypothetical protein VF_2062 2297989 - 2297741 - | hypothetical protein TERM 2631 2298217 - 2298245 + H 93 -11.2 -4.04141 | opp_overlap 2298217 CGCAACAGTGAAAAA TTAGTCAACACT TATTT AGTGTTGGCTAA TTTAATTAATTCTTA TERM 2632 2298245 - 2298217 - H 93 -9 -4.74706 | opp_overlap 2298217 CGCAACAGTGAAAAA TTAGTCAACACT TATTT AGTGTTGGCTAA TTTAATTAATTCTTA metA 2298357 - 2299301 + | homoserine O-succinyltransferase dcuB 2299566 - 2300798 + | anaerobic C4-dicarboxylate transporter TERM 2633 2300914 - 2300949 + T 100 -13.5 -4.18197 | opp_overlap 2300919, overlap 2300919 2300944 CACTAATCAATACAA AAAAAGCCCATGCAA ATACCA TTGCATGGGCTTTTA TTTTCAATAAACGAT TERM 2634 2300919 - 2300944 + T 100 -13.4 -5.10933 | opp_overlap 2300919, overlap 2300914 ATCAATACAAAAAAA GCCCATGCAA ATACCA TTGCATGGGC TTTTATTTTCAATAA TERM 2635 2300944 - 2300919 - T 100 -13.4 -5.82172 | opp_overlap 2300919 2300914 ATCAATACAAAAAAA GCCCATGCAA ATACCA TTGCATGGGC TTTTATTTTCAATAA VF_2065 2302182 - 2300968 - | nucleoside permease NupC VF_2066 2302570 - 2303133 + | hypothetical protein TERM 2636 2303237 - 2303215 - T 100 -12.1 -5.16841 | opp_overlap 2303215 TTATATCAATAAAAA GAGCTCTAG ATAAA CTAGAGCTC TTTTACTAACTAAAA TERM 2637 2303215 - 2303237 + T 100 -12.1 -4.2828 | opp_overlap 2303215 TTATATCAATAAAAA GAGCTCTAG ATAAA CTAGAGCTC TTTTACTAACTAAAA rpoS 2304236 - 2303271 - | RNA polymerase, sigma-S (sigma-38) factor nlpD 2305289 - 2304291 - | lipoprotein NlpD TERM 2638 2304907 - 2304884 - G 79 -11 -3.25823 | overlap 2304887 TTGTTGCGACAGGAA CAACGGCAAC CGCT GTCGCCGTCG AGCTTGAAGACGAAT TERM 2639 2304904 - 2304887 - G 76 -9.1 -3.7732 | overlap 2304884 TTGCGACAGGAACAA CGGCAAC CGCT GTCGCCG TCGAGCTTGAAGACG pcm 2305920 - 2305294 - | protein-L-isoaspartate O-methyltransferase surE 2306693 - 2305920 - | stationary phase survival protein SurE TERM 2640 2306518 - 2306496 - G 79 -11.4 -2.62192 | opp_overlap 2306458, overlap 2306491 2306495 TTGCACTGAATGAAT GTGTTCATCA ATT TGACGAACAC GTAATGGGGATTCAA truD 2307756 - 2306701 - | tRNA pseudouridine synthase D ispF 2308244 - 2307768 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 2308960 - 2308244 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 2641 2308434 - 2308398 - G 71 -6 -4.22927 | gap 1, overlap 2308433 TCAGTAATAGATAAA TTTTGCTCT-AACCCTG TTTG CAGGGCTGAGAACAACA ACTCTGTTGTAAATA ftsB 2309248 - 2308964 - | cell division protein TERM 2642 2309341 - 2309358 + r 80 -6.9 -4.53705 | opp_overlap 2309341 CAGAAATAAAAAAAA CCGCCTC AAAT GAGACGG TTTTATATCGAAATT TERM 2643 2309358 - 2309341 - R 100 -9.1 -6.28967 | opp_overlap 2309341 CAGAAATAAAAAAAA CCGCCTC AAAT GAGACGG TTTTATATCGAAATT eno 2310719 - 2309421 - | phosphopyruvate hydratase TERM 2644 2310784 - 2310761 - R 100 -9.6 -4.87318 | overlap 2310753 TTTAAAAGCTAAAAA TAGCCGCCCA ACAT TGGACAGCTA CTCGTAAATCCTATT pyrG 2312438 - 2310798 - | CTP synthetase mazG 2313391 - 2312570 - | nucleoside triphosphate pyrophosphohydrolase TERM 2645 2312650 - 2312692 + g 71 -4.8 -4.64024 | overlap 2312655 2312689 CTATTTTTTTGCCTT TTTTAGCGACGTTCGCTTCA ATT TGACGAAAACGACGCTCAAA TTTGTTATTTGCTTT TERM 2646 2313449 - 2313427 - R 100 -12.8 -6.23317 | opp_overlap 2313427 ATAAAAACAAAAAAA GCTGTGACCA TTA TAGTCACAGC TTTCTTAATCTCGAT TERM 2647 2313427 - 2313449 + r 100 -10.6 -4.29508 | opp_overlap 2313427 ATAAAAACAAAAAAA GCTGTGACCA TTA TAGTCACAGC TTTCTTAATCTCGAT flaF 2314619 - 2313486 - | flagellin TERM 2648 2314763 - 2314738 - R 100 -11.3 -5.4505 | opp_overlap 2314738 TTTTTCAATAAAAAA GCCGAATATTT TAAA AAATATCCGGC TTTAATCTATCTTAT TERM 2649 2314738 - 2314763 + r 85 -9.1 -3.93985 | opp_overlap 2314738 TTTTTCAATAAAAAA GCCGAATATTT TAAA AAATATCCGGC TTTAATCTATCTTAT relA 2317050 - 2314813 - | (p)ppGpp synthetase I/GTP pyrophosphokinase rumA 2318466 - 2317117 - | 23S rRNA 5-methyluridine methyltransferase TERM 2650 2318370 - 2318385 + g 80 -6.2 -4.78848 | opp_overlap 2318370 2318372 GATCTAATCGAACCA CATCAA CTGA TTGATG TTTTGTGTTTACAGA gacS 2318597 - 2321392 + | hybrid sensory histidine kinase BarA TERM 2651 2321448 - 2321413 - T 100 -11.4 -4.09321 | gap 1, opp_overlap 2321413 2321418, overlap 2321418 TATCTAATTAAATAA TAAAACCAACCTGAGCG TAA CGTT-AGGTTGGTTTTA TTTTAAGATTCGAAA TERM 2652 2321413 - 2321448 + T 100 -13.6 -4.19238 | gap 1, opp_overlap 2321413 2321418, overlap 2321418 TATCTAATTAAATAA TAAAACCAACCTGAGCG TAA CGTT-AGGTTGGTTTTA TTTTAAGATTCGAAA TERM 2653 2321418 - 2321443 + T 100 -9.1 -5.10163 | gap 1, opp_overlap 2321418 2321413, overlap 2321413 AATTAAATAATAAAA CCAACCTGAGCG TAA CGTT-AGGTTGG TTTTATTTTAAGATT TERM 2654 2321443 - 2321418 - T 88 -6.9 -5.03961 | gap 1, opp_overlap 2321413 2321418, overlap 2321413 AATTAAATAATAAAA CCAACCTGAGCG TAA CGTT-AGGTTGG TTTTATTTTAAGATT acpS 2321831 - 2321451 - | 4'-phosphopantetheinyl transferase pdxJ 2322562 - 2321831 - | pyridoxal phosphate biosynthetic protein PdxJ recO 2323275 - 2322559 - | DNA repair protein RecO TERM 2655 2323318 - 2323371 + r 100 -18.3 -3.54459 | opp_overlap 2323328 ATCGCTTCACTTGCA GATTTCAGAAGAGCCGCGGTAAG ACTCGATG CCTACCGCGGCTCTTCTGAACCC TTTAAGGGAGCTTGC TERM 2656 2323361 - 2323328 - R 100 -16.1 -3.34962 | opp_overlap 2323318 TTGCAGATTTCAGAA GAGCCGCGGTAAG ACTCGATG CCTACCGCGGCTC TTCTGAACCCTTTAA era 2324375 - 2323410 - | GTP-binding protein Era rnc 2325046 - 2324375 - | ribonuclease III lepB 2325959 - 2325057 - | leader peptidase (signal peptidase I) TERM 2657 2326028 - 2325992 - R 100 -17.5 -3.29511 | opp_overlap 2325996 2326000 2326025, overlap 2325996 2326000 TTTAGTGTTGCATAA CAAAGAAAGCGAAGACC ATT GATCATCGCTTTCTTTG AGCTGTAATAAAGCT TERM 2658 2325996 - 2326024 + r 86 -10.3 -3.64599 | opp_overlap 2325992 2325996 2326000, overlap 2326000 GTGTTGCATAACAAA GAAAGCGAAGACC ATT GATCATCGCTTTC TTTGAGCTGTAATAA TERM 2659 2326024 - 2325996 - R 100 -12.5 -4.30719 | opp_overlap 2325996 2326000, overlap 2325992 2326000 GTGTTGCATAACAAA GAAAGCGAAGACC ATT GATCATCGCTTTC TTTGAGCTGTAATAA TERM 2660 2326020 - 2326000 - R 83 -7.5 -4.73677 | opp_overlap 2325996 2326000, overlap 2325996 2325992 TGCATAACAAAGAAA GCGAAGACC ATT GATCATCGC TTTCTTTGAGCTGTA lepA 2327875 - 2326082 - | GTP-binding protein LepA TERM 2661 2326225 - 2326246 + g 80 -8.1 -4.4261 | CACCATAACATTTAG CGATTACGT TTTT ACGTAATTG TTTTACTGTTGAACG rseC 2328450 - 2327965 - | sigma-E factor regulatory protein RseC rseB 2329382 - 2328456 - | periplasmic negative regulator of sigmaE TERM 2662 2329347 - 2329380 + g 81 -11.7 -2.76696 | opp_overlap 2329348, overlap 2329346 CATCAGATGCAACAA AGCCTCAGCAGAAGG TTTT TCTTCAGCTGAGGCC ATTATTGGAAAGAAG TERM 2663 2329379 - 2329348 - G 100 -14.5 -4.23615 | opp_overlap 2329347 2329346 ATCAGATGCAACAAA GCCTCAGCAGAAG GTTTTT CTTCAGCTGAGGC CATTATTGGAAAGAA rseA 2330051 - 2329434 - | anti-sigmaE factor, inner membrane rpoE 2330659 - 2330081 - | RNA polymerase sigma factor RpoE TERM 2664 2331251 - 2331238 - g 76 -6.7 -4.40358 | opp_overlap 2331238 2331245, overlap 2331245 ATTTATTGCAGAAAA CGCAA AACA TTGCG TTCAATGGTTAATTG nadB 2330939 - 2332591 + | L-aspartate oxidase TERM 2665 2332632 - 2332651 + T 100 -8.6 -6.06529 | opp_overlap 2332632 ACGACTACTTTAAGA GCACCATT AATT GATGGTGC TTTTTTTTATCTATC VF_2095 2333010 - 2332621 - | hypothetical protein TERM 2666 2332691 - 2332705 + gT 75 -7.2 -4.11692 | opp_overlap 2332691 2332690 2332687 AATAAATAAAAGAAC TGCTTA GTG TAAGCA TTTTCAGCATAGATG VF_2096 2333242 - 2332982 - | hypothetical protein TERM 2667 2333344 - 2333358 + H 70 -4.3 -4.75404 | AAGAAGATGCGACAT GAAAC TACTT GTTTC TTTTTACTGACATTT ygfZ 2333426 - 2334382 + | folate-dependent regulatory protein VF_2098 2334372 - 2334854 + | regulatory protein VF_2650 2335131 - 2335021 - | hypothetical protein TERM 2668 2335068 - 2335087 + g 100 -9.3 -5.9663 | CATCTGTGACTGTTT GCCCGAA CTCTGT TTCGGGC TTTTTTTTAATATTT VF_2099 2335261 - 2335464 + | hypothetical protein TERM 2669 2335472 - 2335488 + T 100 -8 -5.93252 | opp_overlap 2335472 CTTATTAAAAATAAA GGTAGC ATTAC GCTACC TTTTTTGTTTTTAAC TERM 2670 2335488 - 2335472 - T 95 -8.7 -4.91852 | opp_overlap 2335472 CTTATTAAAAATAAA GGTAGCA TTA CGCTACC TTTTTTGTTTTTAAC visC 2336718 - 2335510 - | 2-octaprenyl-6-methoxyphenol hydroxylase ubiH 2337920 - 2336721 - | 2-octaprenyl-6-methoxyphenyl hydroxylase ygfB 2338489 - 2337920 - | hypothetical protein VF_2103 2338728 - 2339069 + | hypothetical protein ygfA 2339283 - 2339864 + | ligase rpiA 2340005 - 2340661 + | ribose-5-phosphate isomerase A TERM 2671 2340725 - 2340742 + F 100 -11.3 -5.49234 | opp_overlap 2340725 TTATTTCATTACAAA CGGTGCT CATT AGCACCG TTTTTTATTAACTAT TERM 2672 2340742 - 2340725 - f 93 -11.3 -3.9712 | opp_overlap 2340725 TTATTTCATTACAAA CGGTGCT CATT AGCACCG TTTTTTATTAACTAT TERM 2673 2340909 - 2340893 - g 71 -3.7 -4.9251 | opp_overlap 2340893 2340904 2340907, overlap 2340895 2340907 AAGAAAAAATCAAAA TTCTTCT TTT AGAAGGA TTGCATCCATCTTGT serA 2340856 - 2342085 + | D-3-phosphoglycerate dehydrogenase TERM 2674 2342094 - 2342126 + T 95 -13.6 -3.38339 | opp_overlap 2342099, overlap 2342099 TCATTAAGATAAATA AAAAATGGGCAGCT TAATT AGCTGCCCATTTTA TTCATATTAAATAAT TERM 2675 2342121 - 2342099 - T 100 -13.5 -5.7827 | opp_overlap 2342094 2342099 AAGATAAATAAAAAA TGGGCAGCT TAATT AGCTGCCCA TTTTATTCATATTAA TERM 2676 2342099 - 2342121 + T 100 -13.5 -4.78753 | opp_overlap 2342099, overlap 2342094 AAGATAAATAAAAAA TGGGCAGCT TAATT AGCTGCCCA TTTTATTCATATTAA yggE 2342838 - 2342146 - | hypothetical protein TERM 2677 2342943 - 2342926 - R 100 -9.9 -5.86332 | opp_overlap 2342926 2342919 TTAAGGCAAAAAAAA TGCTACC CGAA GGTAGCA TTTAATATTTTGATT TERM 2678 2342926 - 2342943 + r 93 -9.9 -4.10188 | opp_overlap 2342926, overlap 2342919 TTAAGGCAAAAAAAA TGCTACC CGAA GGTAGCA TTTAATATTTTGATT mscS 2343829 - 2342969 - | mechanosensitive channel yaaA 2344849 - 2344070 - | hypothetical protein TERM 2679 2344930 - 2344911 - R 100 -7.1 -6.23545 | opp_overlap 2344911 TTCAAATAAAAAAAA GCCACGC TCGAAT GCATGGC TTTATCTATTTATTT TERM 2680 2344949 - 2344975 + r 70 -4.5 -4.73682 | ATCTATTTATTTGAT GGGCAAAAACA ATGAC TATTTTTGCTC TTTTGTATTATCCCA yaaJ 2346397 - 2344964 - | transporter TERM 2681 2345343 - 2345332 - G 73 -2.2 -5.29885 | AAGCGAAAAAGAAAA TCGC TACA GCAA CAAAAATACCGCCCC TERM 2682 2346782 - 2346766 - H 72 -5.1 -4.66938 | overlap 2346769 ATGCTTAATAGAAAA CAACAAG ATA CTTGATG CAATATTACCAATCA VF_2111 2347115 - 2347294 + | hypothetical protein TERM 2683 2347334 - 2347295 - T 100 -10.4 -4.21812 | gap 1, opp_overlap 2347306, overlap 2347299 2347306 GTTTATCTAAAATAA TCAATAAAAAAGGAGAG TCTAGTG CTCTCCTTTTTTA-TGA AATGACCTTTACCTA TERM 2684 2347331 - 2347299 - T 95 -12.3 -3.694 | opp_overlap 2347306, overlap 2347295 2347306 ATCTAAAATAATCAA TAAAAAAGGAGAG TCTAGTG CTCTCCTTTTTTA TGAAATGACCTTTAC TERM 2685 2347306 - 2347324 + T 85 -6.7 -5.26316 | opp_overlap 2347299 2347295 2347306 ATAATCAATAAAAAA GGAGAGT CTAGT GCTCTCC TTTTTTATGAAATGA TERM 2686 2347324 - 2347306 - T 86 -6 -5.57396 | opp_overlap 2347306, overlap 2347299 2347295 ATAATCAATAAAAAA GGAGAG TCTAGTG CTCTCC TTTTTTATGAAATGA VF_2112 2347870 - 2347343 - | hypothetical protein ung 2348634 - 2347960 - | uracil-DNA glycosylase TERM 2687 2348626 - 2348636 + g 75 -2.6 -5.28176 | AATAGAGTTCCAAGT TAAT GCC ATTA TTTTTTCTCACTCAG nfo 2349481 - 2348810 - | endonuclease IV TERM 2688 2349827 - 2349817 - H 74 -6.8 -4.33785 | ATATTTAGAAAATAA CCAC AAA GTGG ACTAGGAGAAAGTAA yfiD 2349844 - 2350221 + | autonomous glycyl radical cofactor GrcA TERM 2689 2350280 - 2350242 - T 70 -4.6 -4.66609 | opp_overlap 2350249, overlap 2350249 TAGTCGATTTAAAAA TACGAAACGGCACTCA ATGCTCA TGAGTGCCGTTTTTTT ATGCCAATCACAGTA TERM 2690 2350273 - 2350249 - T 100 -11.5 -4.13748 | opp_overlap 2350249, overlap 2350242 TTTAAAAATACGAAA CGGCACTCA ATGCTCA TGAGTGCCG TTTTTTTATGCCAAT TERM 2691 2350249 - 2350273 + T 100 -11.5 -5.61596 | opp_overlap 2350249 2350242 TTTAAAAATACGAAA CGGCACTCA ATGCTCA TGAGTGCCG TTTTTTTATGCCAAT TERM 2692 2350390 - 2350364 - T 95 -8.8 -5.38047 | TAGTCATATAAAAAA GTCCCTTTGATC ATT AACCAAAGAGAC TCATCCATTTCAATC thrC 2351696 - 2350413 - | threonine synthase thrB 2352649 - 2351693 - | homoserine kinase thrA 2355110 - 2352651 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 2693 2355234 - 2355258 + r 100 -16.5 -4.84274 | opp_overlap 2355234 AATTTGCAAAAAAAA GCCTGCTCTGG TAA TCAGAGCAGGC TTTTTCATATACTTA TERM 2694 2355258 - 2355234 - R 100 -15.8 -5.77853 | opp_overlap 2355234 AATTTGCAAAAAAAA GCCTGCTCTG GTAAT CAGAGCAGGC TTTTTCATATACTTA thrL 2355348 - 2355280 - | thr operon leader peptide TERM 2695 2355496 - 2355482 - R 70 -2.2 -5.29445 | overlap 2355476 CTTGAATAATAAAAA CAAATA TTT TATTTA TTTATAAAATTTATT rraA2 2355987 - 2355511 - | ribonuclease activity regulator protein RraA arcA 2356436 - 2357155 + | two-component response regulator TERM 2696 2357213 - 2357180 - T 100 -15.5 -3.60627 | opp_overlap 2357185, overlap 2357185 CTATCTGACTTTAAA TAAAATGCCCAGCTA GTGA TAGCTGGGCATTTTT TATCTATATAACATA TERM 2697 2357185 - 2357208 + T 100 -15.4 -5.4492 | opp_overlap 2357180 2357185 TGACTTTAAATAAAA TGCCCAGCTA GTGA TAGCTGGGCA TTTTTTATCTATATA TERM 2698 2357208 - 2357185 - T 100 -15.4 -4.88918 | opp_overlap 2357185, overlap 2357180 TGACTTTAAATAAAA TGCCCAGCTA GTGA TAGCTGGGCA TTTTTTATCTATATA VF_2121 2357678 - 2357232 - | putative lipoprotein TERM 2699 2357698 - 2357712 + r 70 -4.2 -4.70879 | TTCCTTACTTATCTT GCTGCT CTA ACCAGC TTTTTAAAATTTGAA arcB 2360053 - 2357687 - | aerobic respiration control sensor protein ArcB TERM 2700 2359862 - 2359841 - G 79 -5.1 -5.05601 | gap 1, overlap 2359844 CACTACAGATAAAAA GAACACTGCC CAA GGC-GTGATC AATAAACCAAAGAAT TERM 2701 2359859 - 2359844 - G 73 -5.4 -4.61353 | gap 1, overlap 2359841 TACAGATAAAAAGAA CACTGCC CAA GGC-GTG ATCAATAAACCAAAG TERM 2702 2360061 - 2360092 + r 71 -8.9 -3.11732 | opp_overlap 2360059 2360057 2360061 TGCTTCATAAACATA CCCTGATAATATT CACATA AATAATATCAGGG TTAGATGCATTTGAG TERM 2703 2360092 - 2360061 - R 79 -9.6 -3.3353 | opp_overlap 2360061, overlap 2360059 2360057 TGCTTCATAAACATA CCCTGATAATATTC ACAT AAATAATATCAGGG TTAGATGCATTTGAG yhcC 2361049 - 2360108 - | Fe-S oxidoreductase TERM 2704 2363228 - 2363204 - g 80 -10.7 -3.39142 | opp_overlap 2363218 TGCACAGGTAACTAA CCCACCGATCG ATC CGATCCGTGAG CGTATGGTGATGTCT gltB 2361615 - 2366162 + | glutamate synthase, large subunit gltD 2366162 - 2367634 + | glutamate synthase subunit beta TERM 2705 2367667 - 2367688 + F 100 -13.1 -5.28778 | TCCTTCCAAACCTTT GGCCAACAT TTCG ATGTTGGCC TTTTTTCTGCCTCAT VF_2126 2367967 - 2368398 + | hypothetical protein TERM 2706 2368467 - 2368488 + F 100 -13.1 -4.62783 | opp_overlap 2368467 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2707 2368488 - 2368467 - f 100 -13.1 -5.14477 | opp_overlap 2368467 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2708 2368649 - 2368670 + F 100 -13.1 -4.62783 | opp_overlap 2368649 TACAAACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2709 2368670 - 2368649 - f 100 -13.1 -5.24449 | opp_overlap 2368649 TACAAACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2710 2370612 - 2370628 + F 85 -9.4 -4.08546 | overlap 2370604 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 2711 2371405 - 2371417 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 2712 2371966 - 2371985 + F 73 -8.6 -3.23708 | overlap 2371969 ACAGCAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 2713 2372096 - 2372108 + F 80 -4.8 -5.24291 | opp_overlap 2372096 GATTTAACTTAATTA CAGC CTTGA GCTG TTTTGTTTTACTTTT TERM 2714 2372396 - 2372415 + F 72 -9.2 -2.65808 | opp_overlap 2372387, overlap 2372393 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT mtn 2374365 - 2375060 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 2715 2375042 - 2375062 + F 78 -7.7 -4.09321 | opp_overlap 2375042 2375041 AATGGTATTAAACAT GGTTACTTT ATT AAAGTAATC TTATTTAATTGAGTC TERM 2716 2375093 - 2375071 - f 83 -10.7 -3.08173 | opp_overlap 2375071 AGTAATCTTATTTAA TTGAGTCAG TTTCT CTGACTCAA TTTTATCTTCTTTTA TERM 2717 2375071 - 2375093 + F 100 -10.7 -4.88288 | opp_overlap 2375071 AGTAATCTTATTTAA TTGAGTCAG TTTCT CTGACTCAA TTTTATCTTCTTTTA TERM 2718 2375963 - 2375941 - g 70 -2.6 -5.00851 | ATCAAGGAAAGAAAA TCAACCGAGC AAA ACTAGGTGGA AAAATAGCCCCATCA VF_2129 2375127 - 2376080 + | adenosylcobinamide-phosphate synthase yadS 2376123 - 2376734 + | inner membrane protein VF_2131 2376919 - 2378232 + | cell wall endopeptidase TERM 2719 2378272 - 2378239 - T 84 -8.3 -4.5774 | opp_overlap 2378244, overlap 2378244 CATGAATAACTAAAA TTAAAGCCCTAATTA AAGA TAATTAGGGCTTTTT TTTAATCAAGTAATT TERM 2720 2378267 - 2378244 - T 100 -12.6 -4.27965 | opp_overlap 2378244, overlap 2378239 ATAACTAAAATTAAA GCCCTAATTA AAGA TAATTAGGGC TTTTTTTTAATCAAG TERM 2721 2378244 - 2378267 + T 100 -12.6 -5.86061 | opp_overlap 2378244 2378239 ATAACTAAAATTAAA GCCCTAATTA AAGA TAATTAGGGC TTTTTTTTAATCAAG VF_2132 2381372 - 2378274 - | acriflavin resistance plasma membrane protein TERM 2722 2378377 - 2378348 - G 89 -10.1 -4.24948 | gap 1, opp_overlap 2378369 2378371 GTACTAGAGTTAAAA CAGTTGCAA-AGGC CAA GCCTCCTGCAACCG CAGTTGCTAATTGCG TERM 2723 2378819 - 2378803 - G 79 -5.9 -4.90079 | AGCGCAACAAGAAAA GCATTCT GCA AAAATGC GGCCGAGTTATTTTG VF_2133 2382494 - 2381382 - | periplasmic component of efflux system TERM 2724 2382611 - 2382588 - R 95 -9 -5.55769 | opp_overlap 2382588 TTTTATAATAAAAAA GGTAAGTAAA CTCC TCTACTTACC TTTAAATACTCAGGG yadR 2382969 - 2382628 - | iron-sulfur cluster insertion protein ErpA TERM 2725 2382982 - 2382998 + H 70 -7.3 -3.79687 | overlap 2382980 2382985 CATTTAAACCTCTCA GGATTGG TTT CCAATTC TATTTTATAGGCAAT TERM 2726 2383282 - 2383296 + G 85 -8.6 -4.41494 | GTGCTTTTGCTGGCG TTGGTG GCT CACCAA TTTTCGTTGAGCGTG hemL 2383197 - 2384492 + | glutamate-1-semialdehyde aminotransferase TERM 2727 2384514 - 2384533 + F 100 -10.8 -5.21709 | opp_overlap 2384514 ATTAAAACAGATAAA GGCTTTCA TTAT TGAAAGCC TTTTTTCATATAACA TERM 2728 2384533 - 2384514 - f 100 -10.8 -4.34859 | opp_overlap 2384514 ATTAAAACAGATAAA GGCTTTCA TTAT TGAAAGCC TTTTTTCATATAACA TERM 2729 2384825 - 2384837 + G 70 -5.5 -4.41895 | opp_overlap 2384819 2384824, overlap 2384826 TTCAATAAACTGAAC TCCAG TCA CTGGG TTTTAATTGCCGCTT VF_2136 2384801 - 2385886 + | permease TERM 2730 2385908 - 2385937 + F 84 -6.5 -5.18643 | ATTAAAACTCTTTAA GGCCACTGA TTTTCATCATCT TCAGTGGCC TTTTCTTTTCCTTCA rsmC 2386004 - 2387023 + | 16S rRNA m2G1207 methylase TERM 2731 2388006 - 2387994 - g 77 -7.7 -4.2679 | CAAGTTCCATCAAAA CCTAC TTT GTAGG CCAAGACTCTTACTC TERM 2732 2390357 - 2390338 - g 70 -7.9 -3.62756 | opp_overlap 2390336 2390340, overlap 2390331 AGGGCAAACCAAATA CACTCTC GCAGAA GAGAGTG GGTTATGGCGAGTGT chiS 2387189 - 2390569 + | chitin sensor histidine kinase ChiS TERM 2733 2390618 - 2390591 - f 83 -11.4 -2.85354 | opp_overlap 2390596, overlap 2390596 CATCGTAACTCAAAC TAAAAGCCCGTA TATT TACGGGCTTTTT TTTCACCACTACCAA TERM 2734 2390613 - 2390596 - f 100 -11.3 -4.5852 | opp_overlap 2390596, overlap 2390591 TAACTCAAACTAAAA GCCCGTA TATT TACGGGC TTTTTTTTCACCACT TERM 2735 2390596 - 2390613 + F 100 -11.3 -5.75945 | opp_overlap 2390596 2390591 TAACTCAAACTAAAA GCCCGTA TATT TACGGGC TTTTTTTTCACCACT TERM 2736 2390847 - 2390836 - f 82 -3 -5.68489 | TAGAATAAGAAAAAA GAAT ACAT ATTC ACAAAGGTTAAACCG TERM 2737 2390976 - 2390960 - f 71 -5.2 -4.63007 | opp_overlap 2390960 CACAATTACAGAAAA TAACGT TTTTG ACGTTA AAAAAAGTTATTTTG TERM 2738 2391241 - 2391219 - g 71 -9.9 -2.80535 | overlap 2391214 AAAAAAACTACATTA GCTGCTGCA GTACT TGCAGCAAC AACGGGTTTTGCAGC VF_2139 2391189 - 2392862 + | chitooligosaccharide-binding protein TERM 2739 2392877 - 2392901 + F 84 -11.4 -3.03159 | ATATGTAACTGTCTT TGCGGTGCAC CCTTT GTGCACCGCC TATTCCCCCCCTTCC TERM 2740 2393052 - 2393076 + G 86 -10.1 -4.05446 | GTTCTATTTTATTGC GTTGGTCGTTG CTG CAACGATTAAC TTTATCATTCCGCGA VF_2140 2393011 - 2393997 + | chitooligosaccharide transport system permease protein VF_2141 2394000 - 2395025 + | chitooligosaccharide transport system permease protein VF_2142 2395027 - 2396010 + | chitooligosaccharide transport ATP-binding protein VF_2143 2396033 - 2397028 + | chitooligosaccharide transport ATP-binding protein TERM 2741 2398167 - 2398178 + G 71 -7.2 -3.81089 | opp_overlap 2398166 2398167, overlap 2398160 TTCACGCTGCAGAAG CGGG CCTT CCCG TTATTGCTCTCTCTC VF_2144 2397077 - 2398795 + | endochitinase VF_2145 2398798 - 2399673 + | N-acetylglucosamine kinase TERM 2742 2399670 - 2399656 - f 70 -4.3 -4.68209 | opp_overlap 2399656 ATGGCAAGAAACAAA GAACA TAACC TGTTC TAGTCTTTTATAAGG TERM 2743 2399758 - 2399738 - g 83 -6.2 -5.06016 | ATCAGACAAAGAAAA GTTAAACC GTTTT GGCTTAAC CTTACATAATTTAAG VF_2146 2399691 - 2401598 + | beta-hexosaminidase VF_2147 2401637 - 2404042 + | N,N'-diacetylchitobiose phosphorylase TERM 2744 2404105 - 2404079 - f 100 -12.4 -4.60797 | opp_overlap 2404080 2404083 GTGTTATAGACAAAA GTAAGGCACC TTATTCT GGTGCCTTAC TATAAAAGGAATTTA TERM 2745 2405101 - 2405076 - g 81 -11.9 -2.71731 | opp_overlap 2405075 2405076 2405078, overlap 2405078 TGTAGGCTTTAAGCA CATCAGCTCCC AAAT GGAAGCCGATG ATTCTTTAATCGGTG VF_2148 2404123 - 2405535 + | phosphoglucomutase TERM 2746 2405573 - 2405608 + T 86 -8.4 -4.66953 | opp_overlap 2405572 2405576, overlap 2405576 AGAGCTCTAAAGAAT TAACCCAGCTAATATA AGAG TCTGTTAGCTGGGTTC TTTTTACACTATTAA TERM 2747 2405605 - 2405576 - T 71 -7.9 -3.61652 | opp_overlap 2405573 2405576, overlap 2405572 GCTCTAAAGAATTAA CCCAGCTAATATA AGAG TCTGTTAGCTGGG TTCTTTTTACACTAT TERM 2748 2405576 - 2405605 + T 100 -10.1 -4.43351 | opp_overlap 2405572 2405576, overlap 2405573 GCTCTAAAGAATTAA CCCAGCTAATATA AGAG TCTGTTAGCTGGG TTCTTTTTACACTAT VF_2149 2406654 - 2405620 - | iron(III)-transport system ATP-binding protein TERM 2749 2406065 - 2406050 - G 73 -5.4 -4.63184 | AATTTATCTGAAAAA GCGAAG GCTT CTTCAC GACTGTGAGTAACAA VF_2150 2408285 - 2406654 - | iron(III)-transport system permease protein SfuB TERM 2750 2408265 - 2408219 - G 72 -9.8 -3.0497 | opp_overlap 2408228, overlap 2408228 ATAGGATCGCTAAGA TCGGCAAAACCAGTAG-TAGAG AAAAA CTCCAACTACTGGTTTT-CCAA AATAATAATTTTTCT TERM 2751 2408257 - 2408228 - G 77 -8 -4.14472 | gap 1, opp_overlap 2408228, overlap 2408219 CTAAGATCGGCAAAA CCAGTAG-TAGAG AAAAA CTCCAACTACTGG TTTTCCAAAATAATA TERM 2752 2408314 - 2408337 + r 86 -8.2 -4.70659 | opp_overlap 2408314 AGGCTCTTATAAAAA TGATGAGGTA TTGT TACCTCACCA TTTTTAAATATCAAA TERM 2753 2408337 - 2408314 - R 100 -10.4 -4.83169 | opp_overlap 2408314 AGGCTCTTATAAAAA TGATGAGGTA TTGT TACCTCACCA TTTTTAAATATCAAA VF_2151 2409366 - 2408353 - | iron(III) ABC transporter, periplasmic binding protein TERM 2754 2409480 - 2409507 + r 70 -8.4 -3.32997 | opp_overlap 2409480 CTTTTTGATAAAAAA GAGCCCCAATAC TTGC GCATTAGGGCTC TTGAATTTGTAAGGA TERM 2755 2409507 - 2409480 - R 100 -12.8 -5.24129 | opp_overlap 2409480 CTTTTTGATAAAAAA GAGCCCCAATAC TTGC GCATTAGGGCTC TTGAATTTGTAAGGA amtB 2410764 - 2409535 - | ammonium transporter glnK 2411120 - 2410782 - | nitrogen regulatory protein GlnK TERM 2756 2411237 - 2411259 + r 91 -12 -3.71873 | opp_overlap 2411237 TAACAAAACAAAAAA GGCCGCACTA ATA TAGTGCAGCC TTTCCCTATCAATGA TERM 2757 2411259 - 2411237 - R 100 -14.2 -5.92399 | opp_overlap 2411237 TAACAAAACAAAAAA GGCCGCACTA ATA TAGTGCAGCC TTTCCCTATCAATGA yacL 2411651 - 2411283 - | hypothetical protein TERM 2758 2411311 - 2411331 + g 72 -9.1 -3.27653 | opp_overlap 2411301, overlap 2411301 2411309 ATAAATGCTTCCCAA CTTTGAAGC ATA GTTTCAAAG TCTTCTAATCCACAT TERM 2759 2411615 - 2411628 + g 85 -6.7 -5.13741 | AATTCGCATGGTATG TACCC TCAA GGGTA TTTTTCTTAAATTCG cdaR 2411794 - 2412939 + | DNA-binding transcriptional activator TERM 2760 2414084 - 2414064 - g 75 -9.7 -3.28637 | overlap 2414067 2414076 2414077 TAGCAACAGCATCAA CAACCGCAG GAA CTGCCGTTG CAGCAAGTGTATTTA gntP 2413067 - 2414332 + | fructuronate transporter VF_2157 2414345 - 2415475 + | glycerate kinase TERM 2761 2415527 - 2415497 - T 89 -10.7 -3.54543 | gap 1, opp_overlap 2415497 2415498 2415504, overlap 2415504 ATCCAGCCCTCTAAA TA-AAAAAGCAGCC AATT GGCTGCTTTTTGTA TTTATGAAGATAAGG TERM 2762 2415497 - 2415527 + T 90 -10.7 -3.87815 | gap 1, opp_overlap 2415497 2415504, overlap 2415498 2415504 ATCCAGCCCTCTAAA TA-AAAAAGCAGCC AATT GGCTGCTTTTTGTA TTTATGAAGATAAGG TERM 2763 2415498 - 2415525 + T 90 -11.4 -3.52906 | opp_overlap 2415497 2415504, overlap 2415497 2415504 TCCAGCCCTCTAAAT AAAAAAGCAGCC AATT GGCTGCTTTTTG TATTTATGAAGATAA TERM 2764 2415519 - 2415504 - T 100 -10.4 -5.63517 | opp_overlap 2415498 2415497 2415504, overlap 2415497 CCTCTAAATAAAAAA GCAGCC AATT GGCTGC TTTTTGTATTTATGA TERM 2765 2415504 - 2415519 + T 100 -10.4 -5.24799 | opp_overlap 2415504 2415497, overlap 2415498 2415497 CCTCTAAATAAAAAA GCAGCC AATT GGCTGC TTTTTGTATTTATGA acnB 2418083 - 2415543 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 2766 2417896 - 2417912 + g 83 -10.9 -3.77464 | opp_overlap 2417895 2417894, overlap 2417878 TCTTTACTAACAAGT GGAGAAG ATA CTTCTCC TTTAGTAACTGCTGT TERM 2767 2418009 - 2418024 + g 89 -6.8 -5.2189 | overlap 2418011 AAGAATAACTTCTTC TTCGCC TTGA GGCGGA TTTTTTACTAATTCA VF_2159 2420621 - 2418351 - | serine protease TERM 2768 2418464 - 2418454 - G 81 -6.8 -4.78753 | TCAACACCAATAAAA GCAG AAC CTGC AGTATAGAGTGGCGC TERM 2769 2418585 - 2418562 - G 75 -5.4 -4.67942 | TGGAACAAACCAAAA TCGTTATC CATCAAGC GATAACGA TAAACCAAACTACCG TERM 2770 2420834 - 2420813 - H 100 -13.1 -5.14477 | opp_overlap 2420813 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAATAAGTGG TERM 2771 2420813 - 2420834 + H 100 -13.1 -5.1675 | opp_overlap 2420813 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAATAAGTGG TERM 2772 2421018 - 2420997 - H 100 -13.1 -5.14477 | opp_overlap 2420997 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTTAATAAGTG TERM 2773 2420997 - 2421018 + H 100 -13.1 -5.53991 | opp_overlap 2420997 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTTAATAAGTG TERM 2774 2422960 - 2422976 + H 85 -9.4 -4.08546 | overlap 2422952 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 2775 2423753 - 2423765 + H 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 2776 2424462 - 2424474 + H 80 -4.8 -5.24291 | opp_overlap 2424462 GATTTAACTTAATTA CAGC CTTGA GCTG TTTTGTTTTACTTTT TERM 2777 2424580 - 2424569 - H 70 -4.4 -4.72029 | opp_overlap 2424569, overlap 2424579 TTCAACCTAATAAAA GGTT TCGA AACC ATTTTTAAAGACTCT TERM 2778 2424617 - 2424579 - H 82 -9.8 -3.57309 | opp_overlap 2424569 2424593, overlap 2424569 2424616 TAAAAGGTTTCGAAA CCATTTTTAAAGACTCTC AAG GAGAATATTTAAAGATGG TGGAGCTATGCGGGA TERM 2779 2424809 - 2424821 + H 77 -4.9 -5.06451 | opp_overlap 2424809 2424807 GCTACAGACCCAACA TTAAG TCT CTTAA TTTTTTAACCTAATC TERM 2780 2424889 - 2424908 + H 72 -9.2 -2.65808 | opp_overlap 2424880, overlap 2424886 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 2781 2427506 - 2427495 - g 73 -5.8 -4.56597 | opp_overlap 2427494 CTTGGTCCTTAAAAA TGCC AGAT GGCA GTATTGATAAAAAAC VF_2161 2427059 - 2428555 + | methyl-accepting chemotaxis protein TERM 2782 2428710 - 2428728 + T 95 -8.9 -5.69473 | opp_overlap 2428710 CATTACTCTTTTAAA GCATGCT ACTAC AGCATGC TTTTTTTATGCTATC TERM 2783 2428728 - 2428710 - T 82 -9.6 -3.54741 | opp_overlap 2428710 CATTACTCTTTTAAA GCATGCTA CTA CAGCATGC TTTTTTTATGCTATC TERM 2784 2428791 - 2428812 + T 100 -14.5 -3.55761 | opp_overlap 2428791 TCAAATATAAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAAAAGTGGCTC TERM 2785 2428812 - 2428791 - T 100 -14.5 -5.88197 | opp_overlap 2428791 TCAAATATAAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAAAAGTGGCTC TERM 2786 2429088 - 2429104 + T 72 -9.5 -2.62616 | opp_overlap 2429090, overlap 2429090 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 2787 2429308 - 2429350 + T 100 -9.4 -4.67607 | TAAATTGATGTCGTC TCCTCTCTTAACTATCTA AGATGAA TTGATAATTAAGAGAGGA TTTCTTTGTTAGCCG mrcB 2431738 - 2429366 - | fused glycosyl transferase and transpeptidase TERM 2788 2430132 - 2430118 - G 74 -6.4 -4.40181 | opp_overlap 2430118 AAAGAGCATAATAAA GAGGAA CCT CTCCTC TGAATTTACGGTCAA TERM 2789 2431184 - 2431164 - G 74 -6.1 -4.46854 | overlap 2431165 CTACGTAAGAATAAA CGCTGTTGA TCA TCATCAGCA TCCAACATACCTAAG TERM 2790 2431686 - 2431708 + g 75 -5.5 -4.82518 | overlap 2431705 GGTGCTTTCTTCTTT GCTGCCGTT TTTTT AGGGGCAGC TTTTGTTGGTGTTTT hrpB 2434228 - 2431763 - | ATP-dependent RNA helicase HrpB TERM 2791 2434190 - 2434206 + g 79 -9.5 -3.66999 | opp_overlap 2434192 CTTTAATTTCTCAAT CAGTGAT GGG ATCACTG TTTCAATAGGTAACT TERM 2792 2434926 - 2434945 + G 77 -10.8 -2.78384 | opp_overlap 2434925 AAATGGGGTCAATAT TCTCTGCT ACCA AGCAGAGA TGTCATCAAAAGAGA sfsA 2434288 - 2434995 + | sugar fermentation stimulation protein A, DNA-binding transcriptional regulator TERM 2793 2435066 - 2435090 + F 76 -4.3 -5.03227 | opp_overlap 2435073, overlap 2435064 2435062 2435069 TACTGGATCTCAATT GATGAAATCAA TAT TTGATTGCCTC TTTTCTTTCTGCTAT TERM 2794 2435261 - 2435249 - g 70 -9.1 -3.12895 | overlap 2435247 2435245 CCGGTGAGGAATACA TGGGC CCA GCCCA AGTTGAACACTTTAC dksA 2435161 - 2435610 + | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein TERM 2795 2435657 - 2435622 - f 100 -14.2 -3.7948 | opp_overlap 2435623 2435632, overlap 2435623 2435625 2435632 TTAATACCTATCAAA TCATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACGT TTAAATAGTGAATAT TERM 2796 2435656 - 2435623 - f 100 -17.7 -2.87206 | opp_overlap 2435623 2435632, overlap 2435622 2435625 2435632 TAATACCTATCAAAT CATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACG TTTAAATAGTGAATA TERM 2797 2435623 - 2435656 + F 100 -15.5 -3.68827 | opp_overlap 2435623 2435622 2435625 2435632, overlap 2435632 TAATACCTATCAAAT CATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACG TTTAAATAGTGAATA TERM 2798 2435654 - 2435625 - f 100 -16.7 -2.97934 | opp_overlap 2435623 2435632, overlap 2435623 2435622 2435632 ATACCTATCAAATCA TAAAAAAGGGAGC ATTC GCTCCCTTTTTTA CGTTTAAATAGTGAA TERM 2799 2435647 - 2435632 - f 100 -10.4 -5.42265 | opp_overlap 2435623 2435632, overlap 2435625 2435623 2435622 TCAAATCATAAAAAA GGGAGC ATTC GCTCCC TTTTTTACGTTTAAA TERM 2800 2435632 - 2435647 + F 100 -10.4 -5.22039 | opp_overlap 2435632 2435625 2435623 2435622, overlap 2435623 TCAAATCATAAAAAA GGGAGC ATTC GCTCCC TTTTTTACGTTTAAA yadB 2435675 - 2436568 + | glutamyl-Q tRNA(Asp) synthetase pcnB 2436589 - 2438016 + | poly(A) polymerase I folK 2438013 - 2438498 + | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase TERM 2801 2438580 - 2438566 - g 77 -8.6 -3.82262 | AAGTGGAAGCAAGAA GGCAAA AAA TTTGCC ACTGTTACAGCATAT TERM 2802 2438789 - 2438754 - g 72 -8.4 -3.61178 | opp_overlap 2438765 TGCAGGCAGCCCAAA TAGCCTATTAATGGCA GATA TGCCATTCATGAGCTA CGCAACTCCTGAGCA panB 2438521 - 2439315 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 2803 2440121 - 2440105 - g 75 -9.5 -3.28979 | GAAGAGACAACTCAA GCCATTA TTC TAATGGC AGCGTTCCTTGGCCA panC 2439325 - 2440200 + | pantoate--beta-alanine ligase TERM 2804 2440257 - 2440219 - T 100 -17 -5.45802 | opp_overlap 2440224, overlap 2440224 TTTCTAAAAGAAAAA TAAAAGGGCTGAAGATAA TCA CTATCTTCAGCCCTTTTT TCATCTATGATTTAC TERM 2805 2440252 - 2440224 - T 100 -16.9 -5.51078 | opp_overlap 2440224, overlap 2440219 AAAAGAAAAATAAAA GGGCTGAAGATAA TCA CTATCTTCAGCCC TTTTTTCATCTATGA TERM 2806 2440224 - 2440252 + T 100 -16.2 -5.24989 | opp_overlap 2440219 2440224 AAAAGAAAAATAAAA GGGCTGAAGATA ATCAC TATCTTCAGCCC TTTTTTCATCTATGA yadH 2441054 - 2440284 - | ABC transporter membrane protein yadG 2441971 - 2441054 - | ABC transporter ATP-binding protein TERM 2807 2442072 - 2442094 + r 81 -7.7 -4.29621 | opp_overlap 2442072, overlap 2442067 ATAGATAATAAAAAA CCGCAGAGT AATTC ACTCTACGG TTTGATTTATTTCTA TERM 2808 2442094 - 2442072 - R 100 -10.6 -5.62045 | opp_overlap 2442072 2442067 ATAGATAATAAAAAA CCGCAGAGTA ATT CACTCTACGG TTTGATTTATTTCTA ychM 2443779 - 2442124 - | transporter can 2444045 - 2444728 + | carbonic anhydrase TERM 2809 2444760 - 2444726 - T 80 -10.3 -3.14463 | opp_overlap 2444754 AATGTTGGTGATGAA TGATAAAAGGGAA ATAATATCG TTCCCTTTTATCA TAATAAATATATACA TERM 2810 2444808 - 2444842 + T 77 -8.7 -3.70307 | opp_overlap 2444806 2444805 2444802 2444800, overlap 2444806 CAGATAATATAAGTT GCCAGAGAAAGCA TTCACCATT TACTTTCTCTGGC TATTTATTACGTCGC VF_2175 2445100 - 2444849 - | hypothetical protein TERM 2811 2445557 - 2445532 - R 93 -7.6 -5.5353 | opp_overlap 2445532 TATATCAATAAAAAA GCCAAAGAAC ATAAAG GATCTTTGGC TTTATTCTTCTACTT TERM 2812 2445532 - 2445557 + r 82 -7.6 -4.54323 | opp_overlap 2445532 TATATCAATAAAAAA GCCAAAGAAC ATAAAG GATCTTTGGC TTTATTCTTCTACTT hpt 2446162 - 2445632 - | hypoxanthine phosphoribosyltransferase litR 2446537 - 2447142 + | quorum sensing transcriptional regulator LitR (HapR) TERM 2813 2447210 - 2447160 - T 95 -12.3 -3.77196 | gap 1, opp_overlap 2447167 2447176, overlap 2447166 2447176 TCAGGATTCATGAAA TGATAATA-ATAAAAAACCGCTGA TTTC TCAGCGGTTTTTTATATCTTAACA AATGCGTTGTTAATC TERM 2814 2447202 - 2447166 - T 100 -13.4 -3.62849 | gap 1, opp_overlap 2447167 2447176, overlap 2447160 2447176 TTCATGAAATGATAA TAATAAAAAACCGCTGA TTTC TCAGCGGTTTTTTAT-A TCTTAACAAATGCGT TERM 2815 2447167 - 2447202 + T 95 -15 -3.03243 | opp_overlap 2447166 2447160 2447176, overlap 2447176 TCATGAAATGATAAT AATAAAAAACCGCTGA TTTC TCAGCGGTTTTTTATA TCTTAACAAATGCGT TERM 2816 2447176 - 2447193 + T 100 -11.3 -5.47431 | opp_overlap 2447166 2447160 2447176, overlap 2447167 GATAATAATAAAAAA CCGCTGA TTTC TCAGCGG TTTTTTATATCTTAA TERM 2817 2447193 - 2447176 - T 100 -11.3 -5.68489 | opp_overlap 2447176 2447167, overlap 2447166 2447160 GATAATAATAAAAAA CCGCTGA TTTC TCAGCGG TTTTTTATATCTTAA lpd 2448657 - 2447230 - | dihydrolipoamide dehydrogenase TERM 2818 2447874 - 2447892 + g 72 -3.1 -5.16572 | gap 1, overlap 2447873 2447876 2447877 GAACTGCATCGTAAC GC-TCAGC TTCA GCTGGTGC TTTTTTGCCTTCCAT TERM 2819 2448912 - 2448881 - R 73 -8.8 -3.18681 | opp_overlap 2448882, overlap 2448866 2448882 2448885 2448888 CCTTAAGCTTATTAA GCAATAAGGTGACC TATT AGCCACCTTATTGT TTGTTTCAATAACCG TERM 2820 2448911 - 2448882 - R 86 -12.3 -2.50994 | opp_overlap 2448882, overlap 2448866 2448881 2448885 2448888 CTTAAGCTTATTAAG CAATAAGGTGACC TATT AGCCACCTTATTG TTTGTTTCAATAACC TERM 2821 2448882 - 2448911 + r 93 -9.4 -4.46112 | opp_overlap 2448866 2448882 2448881 2448885 2448888 CTTAAGCTTATTAAG CAATAAGGTGAC CTATTA GCCACCTTATTG TTTGTTTCAATAACC TERM 2822 2448908 - 2448885 - R 72 -8.2 -3.40639 | opp_overlap 2448882, overlap 2448866 2448882 2448881 2448888 AAGCTTATTAAGCAA TAAGGTGACC TATT AGCCACCTTA TTGTTTGTTTCAATA aceF 2450818 - 2448932 - | dihydrolipoamide acetyltransferase TERM 2823 2450567 - 2450522 - G 76 -11.1 -2.52795 | opp_overlap 2450514 2450517 2450553 2450554, overlap 2450543 AAGCTCTGCAACTGA TGCTGCAGCAGGAGCAGCAAC TGGT GCTGCTTCAACTGCTGGAGCA GCAGGTGCTTCTGCA TERM 2824 2450554 - 2450574 + g 70 -9.7 -2.57211 | opp_overlap 2450522 2450543, overlap 2450517 2450553 2450570 CAACTGGTGCTGCTT CAACTGCTG GAG CAGCAGGTG CTTCTGCAGCACCCT aceE 2453509 - 2450846 - | pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding TERM 2825 2451481 - 2451493 + g 70 -9.1 -3.13164 | opp_overlap 2451480 TCTCACCATACATAC GACGG ATA CCGTC TTGCATGATTACCGC pdhR 2454335 - 2453565 - | transcriptional regulator PdhR TERM 2826 2454285 - 2454305 + g 73 -6.9 -4.19258 | overlap 2454286 CAGCCTTTCTAACTC TTGTTCGAT TAC ATCGGACAG TTTTGGCTGGCGTAT TERM 2827 2454402 - 2454414 + r 83 -6.3 -4.93877 | opp_overlap 2454402 TCGTCACTTTAATAA TTGGT ATT ACCAA TTTTATTTGATGCAA ampD 2455173 - 2454622 - | N-acetyl-anhydromuranmyl-L-alanine amidase nadC 2455275 - 2456174 + | quinolinate phosphoribosyltransferase TERM 2828 2456201 - 2456218 + F 100 -7.7 -5.93252 | opp_overlap 2456195 2456201 ATCGATAAACAAAAA GCCAGTA AATT TGCTGGC TTTTTTATTTTTAAC TERM 2829 2456218 - 2456201 - f 82 -5.5 -5.38958 | opp_overlap 2456201, overlap 2456195 ATCGATAAACAAAAA GCCAGTA AATT TGCTGGC TTTTTTATTTTTAAC TERM 2830 2456503 - 2456484 - f 70 -3.6 -4.9448 | opp_overlap 2456486, overlap 2456486 ACGCATCAAATAAAA CATGAATC ACCC GATTCATC TTGGAGAGAAAAATG pilA 2456516 - 2456920 + | pilin subunit PilA TERM 2831 2457322 - 2457288 - g 74 -5.1 -4.67048 | CTAGCGGAAAACAAA TTGAATTAGTACTTG CAGAT CAAGGACAAATCCAA GCAGCCATTCGACGC pilB 2456927 - 2458615 + | pilus assembly protein PilB TERM 2832 2459161 - 2459181 + G 85 -4 -5.63103 | opp_overlap 2459161 2459160 CCAAAGTAATCAAAG CCATGATT TATCC AACCATGG TTTTTTTAGTTGCGA TERM 2833 2459188 - 2459208 + G 74 -6.2 -4.37013 | CAACCATGGTTTTTT TAGTTGCG ATAAC CGTAACTA TTTTAATGCTTACTT TERM 2834 2459738 - 2459719 - g 70 -3.6 -4.89521 | ACATGCTAAATAAAA TTGCTCAT GTTT ATGAGGAA GATGTTGATAATACC pilC 2458635 - 2459873 + | pilus assembly protein PilC pilD 2459978 - 2460865 + | type 4 prepilin peptidase PilD coaE 2460862 - 2461410 + | dephospho-CoA kinase yacF 2461490 - 2462236 + | hypothetical protein VF_2191 2462244 - 2462453 + | zinc-binding protein TERM 2835 2462490 - 2462474 - T 100 -10.9 -5.64421 | opp_overlap 2462474 ATTCCAAATAAAAAA GCGATCA TCA TGATCGC TTTTTTTGTACCTAT TERM 2836 2462474 - 2462490 + T 100 -10.9 -5.65177 | opp_overlap 2462474 ATTCCAAATAAAAAA GCGATCA TCA TGATCGC TTTTTTTGTACCTAT mutT 2462924 - 2462523 - | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP TERM 2837 2462959 - 2462987 + r 100 -10.4 -4.74103 | opp_overlap 2462932 2462964, overlap 2462964 CATATCACGCTTATA AAAAAGCCGCTA AATGA TAGCGGCTTTTA TTTTTCAATTAAGAA TERM 2838 2462982 - 2462964 - R 100 -10.3 -5.252 | opp_overlap 2462959 2462964 CACGCTTATAAAAAA GCCGCTA AATGA TAGCGGC TTTTATTTTTCAATT TERM 2839 2462964 - 2462982 + r 100 -10.3 -5.29885 | opp_overlap 2462964, overlap 2462959 CACGCTTATAAAAAA GCCGCTA AATGA TAGCGGC TTTTATTTTTCAATT secA 2465739 - 2463016 - | preprotein translocase subunit SecA TERM 2840 2463683 - 2463703 + g 70 -8.3 -3.30619 | opp_overlap 2463681 2463683, overlap 2463702 TATTGACCAAATAGA CCTTCAAGA ACT TCTTGACGG TTGTAACCAATCATT TERM 2841 2463703 - 2463683 - G 70 -8.3 -3.30418 | opp_overlap 2463683 2463702, overlap 2463681 TATTGACCAAATAGA CCTTCAAGA ACT TCTTGACGG TTGTAACCAATCATT TERM 2842 2464566 - 2464581 + g 73 -7.6 -4.0162 | CTGTGTCCGCAGTAC CTGTCA TACC TGACAG TTTGTCATATAAACG TERM 2843 2464623 - 2464633 + g 73 -5.4 -4.50058 | opp_overlap 2464623 GGAATGTAATAGAAG CCAA TGT TTGG TTTTCGTTCTGAATC TERM 2844 2465861 - 2465886 + H 70 -8.3 -3.16079 | overlap 2465850 CTTACCTTATGGGGA TGAGGCTTTGA TTTT TCAAGGCCACA TTAGATAGTTGTGTT VF_2194 2466075 - 2466542 + | hypothetical protein TERM 2845 2466577 - 2466594 + T 100 -11.3 -5.40004 | opp_overlap 2466577 ATTAGATACAAAAAA GCCAAGC ATTC GCTTGGC TTTTTTAATTTGATG TERM 2846 2466594 - 2466577 - T 100 -11.3 -5.43414 | opp_overlap 2466577 ATTAGATACAAAAAA GCCAAGC ATTC GCTTGGC TTTTTTAATTTGATG lpxC 2467536 - 2466619 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase ftsZ 2468892 - 2467642 - | cell division protein FtsZ ftsA 2470187 - 2468925 - | cell division protein FtsA TERM 2847 2469667 - 2469718 + g 70 -9.6 -2.57985 | opp_overlap 2469679 CCACAACGTTCTACC GCTTTCACTATATTACGTGCCATA TCAT TATGGCAGGTAATAAGATGAACGC TAACTTCCATTCTCA TERM 2848 2469706 - 2469679 - G 73 -10 -2.78463 | opp_overlap 2469667 ACCGCTTTCACTATA TTACGTGCCATA TCAT TATGGCAGGTAA TAAGATGAACGCTAA ftsQ 2470959 - 2470189 - | cell division protein FtsQ murC 2472629 - 2471166 - | UDP-N-acetylmuramate--L-alanine ligase murG 2473709 - 2472645 - | N-acetylglucosaminyl transferase ftsW 2474823 - 2473693 - | integral membrane protein involved in stabilizing FtsZ ring during cell division murD 2476112 - 2474898 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 2849 2475382 - 2475364 - G 70 -8.2 -3.64822 | AGTGTTGCATCTAAA TTGATACC AGC GGCATCAA GTAATGCAATTGCAA TERM 2850 2475513 - 2475532 + g 72 -3.5 -5.04265 | opp_overlap 2475512 AATACAGCCATAATC GCCTTGG TCAAAC CCAAAGC TTTTTAATGTTTTTT mraY 2477305 - 2476223 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 2478663 - 2477305 - | UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase TERM 2851 2478443 - 2478453 + g 73 -6.8 -4.25256 | opp_overlap 2478442 ATTACTTGAGGAAGT GTCG TAT CGAC TTCTTTTGATACAAG murE 2480141 - 2478660 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase TERM 2852 2479415 - 2479440 + g 79 -4.8 -5.02074 | GCCATTGGCAACCTA CTTGATCATC CCCATT GATGATTGAG TTTTTTGGACGATGA TERM 2853 2480003 - 2480021 + g 77 -8.8 -3.95584 | opp_overlap 2480002 2479998 ACGAAATAAATTGAC GGCCATCC ACT GCATGGCC TTTAATTGCTACAAA ftsI 2481888 - 2480149 - | transpeptidase (penicillin-binding protein 3) TERM 2854 2481206 - 2481226 + g 75 -7.7 -4.08767 | overlap 2481208 AATGGCTTCCCTTCT TGTTTCTCT TTT AGAGAAATA TTTTCAACCACTCGG TERM 2855 2481208 - 2481224 + g 70 -8.1 -3.6422 | overlap 2481206 TGGCTTCCCTTCTTG TTTCTCT TTT AGAGAAA TATTTTCAACCACTC TERM 2856 2481825 - 2481804 - G 79 -5.1 -5.13648 | opp_overlap 2481812 2481817, overlap 2481810 2481811 GAAAGACAAAGAAAA CAATAACGC CAAA GCGCCACTG GATAAATGTTGGTGG TERM 2857 2481812 - 2481848 + g 95 -13.1 -3.52836 | opp_overlap 2481804 2481811 2481810, overlap 2481817 AAGAAAACAATAACG CCAAAGCGCCACTGG ATAAATG TTGGTGGCGCTTTGG TTATGCGTTTATTGT ftsL 2482211 - 2481885 - | membrane bound cell division protein mraW 2483158 - 2482208 - | S-adenosyl-methyltransferase MraW TERM 2858 2482536 - 2482553 + g 76 -3.3 -5.19879 | CGGAATGCTTGGAAT GCACGCG TTGC TGGGTGC TTTTTCTCTTTAAAG TERM 2859 2483284 - 2483321 + r 82 -11.4 -2.52464 | opp_overlap 2483284 AGCAGAAAGCACAAA GCCCACCATAACACTA CCGAAA TAGTACTATGGTGGGC TAAGTTAGAGCCGAC TERM 2860 2483321 - 2483284 - R 100 -16.5 -4.18303 | opp_overlap 2483284 AGCAGAAAGCACAAA GCCCACCATAACACTAC CGAA ATAGTACTATGGTGGGC TAAGTTAGAGCCGAC yraL 2484718 - 2483789 - | methyltransferase TERM 2861 2485800 - 2485782 - g 70 -3.2 -4.95758 | opp_overlap 2485785, overlap 2485785 ACCACATTAGAAAAA GAACAAAT TCA ATTTGTTG TTGGACCTTTAGTCC TERM 2862 2485797 - 2485785 - g 71 -4.9 -4.57057 | opp_overlap 2485785, overlap 2485782 ACATTAGAAAAAGAA CAAAT TCA ATTTG TTGTTGGACCTTTAG yraM 2484831 - 2486642 + | hypothetical protein TERM 2863 2486740 - 2486771 + G 84 -6.8 -4.89838 | gap 1, opp_overlap 2486743, overlap 2486743 CAGTCAAAAACCGGA GAA-CTTGATCTC ATCATGC GAGATCAAGATTC TTTTGTGTTTGTTGA TERM 2864 2486767 - 2486743 - g 77 -9.4 -3.44553 | opp_overlap 2486740 2486743 TCAAAAACCGGAGAA CTTGATCTCA TCATG CGAGATCAAG ATTCTTTTGTGTTTG TERM 2865 2486743 - 2486767 + G 70 -8.7 -3.27852 | opp_overlap 2486743, overlap 2486740 TCAAAAACCGGAGAA CTTGATCTC ATCATGC GAGATCAAG ATTCTTTTGTGTTTG yraN 2486623 - 2486994 + | hypothetical protein TERM 2866 2487033 - 2487020 - g 71 -5.3 -4.60648 | overlap 2487016 AAAATATCAAAGAAA GCTTT ACTG AAAGC ATTCAAATCCAAATT diaA 2486998 - 2487588 + | DnaA initiator-associating factor for replication initiation TERM 2867 2487992 - 2487980 - g 77 -6.3 -4.4891 | TGGATCACGACAAAA GTGAA ATC TTCAC TCCTCGCCAAAAGTG TERM 2868 2488041 - 2488026 - g 72 -3.3 -5.16151 | TAAACGGAATAAAAA TCAGT GTATTT ACTGA AGCTCAAGAAGTGTT yraP 2487593 - 2488180 + | hypothetical protein TERM 2869 2488198 - 2488229 + T 89 -11.8 -3.22106 | opp_overlap 2488199 2488205, overlap 2488205 AATAACCAAAGCACA ATAAAAAGCCTACA TTTC TGTAGGCTTTTTAG TTGGATTCAATTGTT TERM 2870 2488228 - 2488199 - T 100 -15.3 -3.65638 | opp_overlap 2488198 2488205, overlap 2488205 ATAACCAAAGCACAA TAAAAAGCCTACA TTTC TGTAGGCTTTTTA GTTGGATTCAATTGT TERM 2871 2488222 - 2488205 - T 100 -9.9 -5.25772 | opp_overlap 2488198 2488205, overlap 2488199 AAAGCACAATAAAAA GCCTACA TTTC TGTAGGC TTTTTAGTTGGATTC TERM 2872 2488205 - 2488222 + T 100 -9.9 -4.90013 | opp_overlap 2488205 2488199, overlap 2488198 AAAGCACAATAAAAA GCCTACA TTTC TGTAGGC TTTTTAGTTGGATTC sspB 2488714 - 2488250 - | ClpXP protease specificity-enhancing factor sspA 2489349 - 2488714 - | stringent starvation protein A TERM 2873 2489399 - 2489382 - R 70 -4.1 -4.72497 | opp_overlap 2489395 TATCTAGGAACAAAA GCACC ACATTTAG GGTGC CGTCATCTATTATTA TERM 2874 2489463 - 2489441 - R 100 -16.4 -4.99638 | opp_overlap 2489444 ATAGTGACACAAAAA CAATGGAGGC TGA GCCTCCATTG CGTACAATTAACGAT TERM 2875 2489444 - 2489460 + r 87 -12.3 -3.07994 | opp_overlap 2489441 GTGACACAAAAACAA TGGAGGC TGA GCCTCCA TTGCGTACAATTAAC VF_2217 2490230 - 2489493 - | cytochrome c1 VF_2218 2491495 - 2490227 - | cytochrome b VF_2220 2492088 - 2491495 - | ubiquinol-cytochrome c reductase iron-sulfur subunit TERM 2876 2492010 - 2491994 - G 72 -4.3 -4.71776 | overlap 2491996 CAAGATTTAATAAAA GGTACGG CCA CCGCAGC AGCTCCTAGCCCACC TERM 2877 2492433 - 2492404 - R 100 -19.5 -4.53475 | opp_overlap 2492409, overlap 2492409 AGCTCACAAAAACAA CAAAAGCCCAGCA TAAA TGCTGGGCTTTTG ACCACAATACCAAAG TERM 2878 2492409 - 2492428 + r 100 -13.6 -4.08216 | opp_overlap 2492404 2492409 ACAAAAACAACAAAA GCCCAGCA TAAA TGCTGGGC TTTTGACCACAATAC TERM 2879 2492428 - 2492409 - R 100 -13.6 -5.18715 | opp_overlap 2492409, overlap 2492404 ACAAAAACAACAAAA GCCCAGCA TAAA TGCTGGGC TTTTGACCACAATAC TERM 2880 2492472 - 2492443 - R 91 -13.1 -3.27475 | gap 1, opp_overlap 2492451, overlap 2492444 2492448 2492465 CTTTTGACCACAATA CCAAAGGAGTTTTG AAA CAAAACTCC-TTGG AAGCGTAAAATTAAC TERM 2881 2492472 - 2492444 - R 87 -13.3 -2.56271 | opp_overlap 2492451, overlap 2492443 2492448 2492465 TTTTGACCACAATAC CAAAGGAGTTTTG AAA CAAAACTCCTTGG AAGCGTAAAATTAAC TERM 2882 2492468 - 2492448 - R 100 -12.7 -3.98159 | opp_overlap 2492451, overlap 2492443 2492444 2492465 GACCACAATACCAAA GGAGTTTTG AAA CAAAACTCC TTGGAAGCGTAAAAT rpsI 2492875 - 2492483 - | 30S ribosomal protein S9 rplM 2493319 - 2492891 - | 50S ribosomal protein L13 yhcM 2494744 - 2493599 - | hypothetical protein yhcB 2494856 - 2495311 + | cytochrome d ubiquinol oxidase subunit III degP 2495391 - 2496758 + | serine endoprotease DegP (protease Do), periplasmic TERM 2883 2496799 - 2496759 - f 90 -12 -3.46824 | opp_overlap 2496766 2496770, overlap 2496763 2496766 2496770 CTAGTAATTAAGTAA CCTAGAAGCAAGCACTCA TTCTT TGAGTGCTTGCTTCTCCA TCCTCTACTTTTTAA TERM 2884 2496795 - 2496763 - f 100 -19.4 -2.6193 | opp_overlap 2496766 2496770, overlap 2496759 2496766 2496770 TAATTAAGTAACCTA GAAGCAAGCACTCA TTCTT TGAGTGCTTGCTTC TCCATCCTCTACTTT TERM 2885 2496792 - 2496766 - f 100 -15.3 -3.45134 | opp_overlap 2496766 2496770, overlap 2496763 2496759 2496770 TTAAGTAACCTAGAA GCAAGCACTCA TTCTT TGAGTGCTTGC TTCTCCATCCTCTAC TERM 2886 2496766 - 2496792 + F 100 -15.3 -3.38768 | opp_overlap 2496766 2496763 2496759 2496770, overlap 2496770 TTAAGTAACCTAGAA GCAAGCACTCA TTCTT TGAGTGCTTGC TTCTCCATCCTCTAC TERM 2887 2496788 - 2496770 - f 75 -8.9 -3.47403 | opp_overlap 2496770 2496766, overlap 2496766 2496763 2496759 GTAACCTAGAAGCAA GCACTCA TTCTT TGAGTGC TTGCTTCTCCATCCT TERM 2888 2496770 - 2496788 + F 75 -8.9 -3.46212 | opp_overlap 2496766 2496763 2496759 2496770, overlap 2496766 GTAACCTAGAAGCAA GCACTCA TTCTT TGAGTGC TTGCTTCTCCATCCT degS 2496873 - 2497937 + | serine endoprotease DegS, periplasmic TERM 2889 2497941 - 2497972 + T 84 -11.8 -2.87931 | opp_overlap 2497946, overlap 2497946 CCAAACAATTAATAA AAAAATAGCGCATT AAAA AATGCGCTATTTTG TATCTAAGCAATCGC TERM 2890 2497946 - 2497967 + T 100 -11.7 -4.60797 | opp_overlap 2497946, overlap 2497941 CAATTAATAAAAAAA TAGCGCATT AAAA AATGCGCTA TTTTGTATCTAAGCA TERM 2891 2497967 - 2497946 - T 100 -11.7 -5.87996 | opp_overlap 2497946 2497941 CAATTAATAAAAAAA TAGCGCATT AAAA AATGCGCTA TTTTGTATCTAAGCA parC 2500276 - 2498000 - | DNA topoisomerase IV subunit A parE 2502159 - 2500279 - | DNA topoisomerase IV subunit B yqiA 2502887 - 2502303 - | esterase YqiA cpdA 2503711 - 2502887 - | cyclic 3',5'-adenosine monophosphate phosphodiesterase TERM 2892 2503583 - 2503593 + g 75 -5.4 -4.81551 | opp_overlap 2503583 TACTTGTTCTACAAC GCTT TGA AAGC TTTTTCGTGTAGGTA yqiB 2504197 - 2503727 - | hypothetical protein nudF 2504798 - 2504160 - | ADP-ribose pyrophosphatase TERM 2893 2505523 - 2505509 - g 76 -7.2 -4.20918 | GTCAACTTGAACAAA CAAAAC AAC GTTTTG ATGTAGGTTTGTCAG tolC 2505031 - 2506356 + | outer membrane channel protein TERM 2894 2506401 - 2506431 + T 100 -12.8 -4.4715 | opp_overlap 2506406, overlap 2506406 ATTAGCACACAAACA AAAAAGCCACATTA CTA TAATGTGGCTTTTC TTTTATCCGTTGCCG TERM 2895 2506406 - 2506426 + T 100 -12.7 -5.19275 | opp_overlap 2506406, overlap 2506401 CACACAAACAAAAAA GCCACATTA CTA TAATGTGGC TTTTCTTTTATCCGT TERM 2896 2506426 - 2506406 - T 100 -12.7 -5.76237 | opp_overlap 2506406 2506401 CACACAAACAAAAAA GCCACATTA CTA TAATGTGGC TTTTCTTTTATCCGT rfaE 2507880 - 2506450 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase glnE 2510871 - 2508016 - | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 2897 2508305 - 2508333 + g 70 -3.1 -5.00616 | TCTGTAATTCCCCCA GCATCTTGCTTAA TCA TGAAGCGATGTGC TTTTTTCCCACCAAG TERM 2898 2508375 - 2508387 + g 74 -6.3 -4.44277 | TTTTTTCTCGCATAT CAAGA ACA TCTTG TTTTAGCTTTTCATC TERM 2899 2510267 - 2510254 - G 73 -2.4 -5.18357 | TAATCGAGTAAAAAA TTGC GCATTA GCAA TGCTACGACGAGCGC TERM 2900 2511052 - 2511030 - R 100 -9.2 -5.27938 | opp_overlap 2511023 2511030 AGCCGCAAACAAAAA CGCCTACA ACTGGAG TGTAGGCG TTATTAATTTTAAAG TERM 2901 2511030 - 2511052 + r 85 -9.2 -3.965 | opp_overlap 2511030, overlap 2511023 AGCCGCAAACAAAAA CGCCTACA ACTGGAG TGTAGGCG TTATTAATTTTAAAG VF_2236 2512678 - 2511077 - | methyl-accepting chemotaxis protein VF_2237 2512785 - 2513549 + | potassium channel protein TERM 2902 2513577 - 2513541 - T 100 -7.3 -5.80951 | opp_overlap 2513538 2513541 ATTGAAAATAAAAAA GAGAAGTAATCAACCCA ATG TAGGGAGATGACTTCTC TTCTTTGTTAATCCT ygiF 2515147 - 2513630 - | adenylate cyclase TERM 2903 2515682 - 2515692 + G 75 -5.4 -4.8066 | AAATTCCAAGCTCCA TGCA GGA TGCA TTTTTAGCTTATGTT VF_2239 2515333 - 2516013 + | hypothetical protein pitA 2516041 - 2517321 + | phosphate transporter, low-affinity TERM 2904 2517352 - 2517371 + F 83 -7.9 -4.70169 | opp_overlap 2517352 CAACAATGGCACAAA GAGGAGA GTAATA TCTCCTC TTTTCTTGCATCTGG TERM 2905 2517371 - 2517352 - f 76 -7.9 -3.95051 | opp_overlap 2517352 CAACAATGGCACAAA GAGGAGA GTAATA TCTCCTC TTTTCTTGCATCTGG htrG 2517490 - 2518101 + | signal transduction protein TERM 2906 2518118 - 2518153 + T 84 -11.4 -3.08867 | opp_overlap 2518110 2518127, overlap 2518127 CAATAAGTTTTATGA CATAAAAAAGCTCAGA TTAT TCTGAGCTTTTTTGTA TGTGTTACAAATTAC TERM 2907 2518144 - 2518127 - T 100 -9.9 -5.39721 | opp_overlap 2518118 2518127 TTATGACATAAAAAA GCTCAGA TTAT TCTGAGC TTTTTTGTATGTGTT TERM 2908 2518127 - 2518144 + T 100 -9.9 -5.46276 | opp_overlap 2518127, overlap 2518118 TTATGACATAAAAAA GCTCAGA TTAT TCTGAGC TTTTTTGTATGTGTT VF_2242 2518842 - 2518165 - | general secretion pathway protein B gspA 2520400 - 2518844 - | general secretion pathway protein A cca 2520537 - 2521760 + | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase bacA 2522826 - 2522023 - | undecaprenyl pyrophosphate phosphatase TERM 2909 2522286 - 2522270 - G 73 -2.1 -5.34309 | ATTAGGAAAGAAAAA CGTGCCG CTG CCTCACG AGTAAATCCAAGATA VF_2246 2523324 - 2522836 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase folB 2523674 - 2523321 - | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase TERM 2910 2523747 - 2523724 - H 84 -5.4 -5.50723 | opp_overlap 2523728 2523745, overlap 2523743 CCATCAAAAGAAAAA CAACGTAATA TTGA TATTACTTTG CTCAATGTGTCGAGC TERM 2911 2524389 - 2524366 - g 74 -4.6 -4.91977 | overlap 2524367 CATGAAAATATAAAA CGTTTCTTTG AAGG CAAAGAGACA AAAATATGGCAAAGA ygiH 2523820 - 2524416 + | putative glycerol-3-phosphate acyltransferase PlsY TERM 2912 2524424 - 2524409 - T 85 -6.8 -5.28942 | opp_overlap 2524409 TATGGCAAAGAAAAA GGGACT AAAT AGCCCC TTTATATAGATAACG TERM 2913 2524447 - 2524464 + T 79 -4.1 -5.38326 | opp_overlap 2524439, overlap 2524448 AGATAACGATCTTTT ATGATCC AAAC GGATCAC TTTTTATTTAATTGG TERM 2914 2524448 - 2524463 + T 73 -7.6 -3.81369 | opp_overlap 2524439, overlap 2524447 GATAACGATCTTTTA TGATCC AAAC GGATCA CTTTTTATTTAATTG ygjD 2525484 - 2524468 - | peptidase TERM 2915 2525568 - 2525554 - H 71 -8.6 -2.96899 | CCTCAAGCAAGGAGA TGCCTT AAG AAGGCA AAATAAACAAAGAAA rpsU 2525712 - 2525927 + | 30S ribosomal protein S21 VF_2251 2525957 - 2526400 + | GatB/YqeY domain-containing protein TERM 2916 2526450 - 2526420 - f 100 -18.4 -4.42653 | opp_overlap 2526420 2526423 ACTCTATTTATAAAA CAAGCCGTGCTATC TTT GATTGCACGGCTTG TTTGTATCTACAGGA TERM 2917 2526420 - 2526450 + F 100 -18.4 -4.12532 | opp_overlap 2526420, overlap 2526423 ACTCTATTTATAAAA CAAGCCGTGCTATC TTT GATTGCACGGCTTG TTTGTATCTACAGGA TERM 2918 2526423 - 2526447 + F 100 -14.3 -4.18674 | opp_overlap 2526420, overlap 2526420 CTATTTATAAAACAA GCCGTGCTATC TTT GATTGCACGGC TTGTTTGTATCTACA TERM 2919 2527851 - 2527838 - g 76 -4.5 -5.04733 | CAACCAGAAATAAAA CGCAC GGCT ATGCG AGAAGTAATAACTTT dnaG 2526476 - 2528239 + | DNA primase TERM 2920 2528589 - 2528567 - g 73 -9.8 -3.21912 | overlap 2528569 2528579 GCCGTAACTGATGAA GATGCAGCAG AAG CCGCTGCAGC AGCACTATCAAGTGT TERM 2921 2528587 - 2528569 - g 79 -11 -3.17319 | overlap 2528567 2528579 CGTAACTGATGAAGA TGCAGCAG AAG CCGCTGCA GCAGCACTATCAAGT TERM 2922 2529401 - 2529390 - g 79 -5.8 -4.89063 | GCATCGAAAAAGAAA CAGG TTTA CCTG TAGAGAATATTAAAG rpoD 2528339 - 2530180 + | RNA polymerase sigma factor RpoD TERM 2923 2530214 - 2530231 + T 79 -5.5 -5.1287 | opp_overlap 2530208 TAATAGAATCAAAAA GGTGGGC TTAG GTTCACC TTTTTTCGATCTGAA TERM 2924 2530420 - 2530447 + T 100 -13.6 -5.24003 | opp_overlap 2530420 CACCAAATTAAAAAA GGCTGATGAGTA TTTT TACTTATCAGCC TTTTTGCTTTTTATT TERM 2925 2530447 - 2530420 - T 100 -11.4 -5.40004 | opp_overlap 2530420 CACCAAATTAAAAAA GGCTGATGAGTA TTTT TACTTATCAGCC TTTTTGCTTTTTATT VF_2655 2530607 - 2530458 - | hypothetical protein VF_2255 2530792 - 2531412 + | hypothetical protein VF_2256 2531558 - 2533102 + | long-chain-fatty-acid--CoA ligase VF_2257 2533185 - 2533586 + | hypothetical protein TERM 2926 2533593 - 2533607 + F 93 -7.1 -5.64421 | opp_overlap 2533593 AATCAATAATATAAA GGCAC TCAAT GTGCC TTTTTTATTTCGAGT TERM 2927 2533607 - 2533593 - f 78 -7.1 -4.36774 | opp_overlap 2533593 AATCAATAATATAAA GGCAC TCAAT GTGCC TTTTTTATTTCGAGT pykF 2533972 - 2535384 + | pyruvate kinase TERM 2928 2535446 - 2535419 - f 87 -11.4 -3.15231 | opp_overlap 2535425, overlap 2535425 AGTATAACGAGTTAA TAAAAAGAGGGC TTTC GCCCTCTTTTTT TATGAAATTTTCTTG TERM 2929 2535440 - 2535425 - f 100 -10.4 -5.11063 | opp_overlap 2535425, overlap 2535419 ACGAGTTAATAAAAA GAGGGC TTTC GCCCTC TTTTTTTATGAAATT TERM 2930 2535425 - 2535440 + F 100 -10.4 -5.63504 | opp_overlap 2535425 2535419 ACGAGTTAATAAAAA GAGGGC TTTC GCCCTC TTTTTTTATGAAATT csiR 2535525 - 2536187 + | DNA-binding transcriptional regulator TERM 2931 2536215 - 2536200 - T 100 -10.4 -5.80248 | opp_overlap 2536200 TAAGAGATAAAAAAA CCAGGC AAAT GCCTGG TTTTTTTTATTGAAA TERM 2932 2536200 - 2536215 + T 100 -10.4 -6.09888 | opp_overlap 2536200 TAAGAGATAAAAAAA CCAGGC AAAT GCCTGG TTTTTTTTATTGAAA VF_2260 2536364 - 2536233 - | hypothetical protein VF_2261 2538385 - 2536490 - | GGDEF domain-containing protein TERM 2933 2538461 - 2538485 + r 83 -10.1 -3.89346 | opp_overlap 2538436 2538461 2538466, overlap 2538465 TTACACAAGATAAAA TAAAACCCTTC TGA GAAGGGCTTTA TTTATAGGATAAAGA TERM 2934 2538485 - 2538461 - R 100 -12.3 -4.76963 | opp_overlap 2538461 2538465, overlap 2538436 2538466 TTACACAAGATAAAA TAAAACCCTTC TGA GAAGGGCTTTA TTTATAGGATAAAGA TERM 2935 2538465 - 2538481 + r 76 -6.5 -4.56367 | opp_overlap 2538461 2538466, overlap 2538461 ACAAGATAAAATAAA ACCCTTC TGA GAAGGGC TTTATTTATAGGATA TERM 2936 2538480 - 2538466 - R 100 -10 -5.26907 | opp_overlap 2538465 2538461, overlap 2538461 CAAGATAAAATAAAA CCCTTC TGA GAAGGG CTTTATTTATAGGAT ilvH 2539012 - 2538518 - | acetolactate synthase 3 regulatory subunit ilvI 2540733 - 2539012 - | acetolactate synthase 3 catalytic subunit TERM 2937 2540949 - 2540978 + r 93 -12.3 -3.38584 | opp_overlap 2540954, overlap 2540954 ATTTTAACCAAATAA AAAAAGCCAACTC TTTC GAGTTGGCTTTTA TTGATTAAATCATAT TERM 2938 2540973 - 2540954 - R 100 -12.2 -6.01187 | opp_overlap 2540949 2540954 AACCAAATAAAAAAA GCCAACTC TTTC GAGTTGGC TTTTATTGATTAAAT TERM 2939 2540954 - 2540973 + r 100 -12.2 -4.79174 | opp_overlap 2540954, overlap 2540949 AACCAAATAAAAAAA GCCAACTC TTTC GAGTTGGC TTTTATTGATTAAAT VF_2264 2542845 - 2541007 - | long-chain-fatty-acid--CoA ligase TERM 2940 2542298 - 2542335 + g 79 -10.7 -3.21938 | gap 1, opp_overlap 2542308, overlap 2542302 2542304 2542309 2542327 AGATCATCCATTTTT GCTTCATCAAGGCGAGTT AAT AGCTCGCTTTGATGT-GC TTCATCAGCTTTTGC TERM 2941 2542302 - 2542332 + g 95 -15.6 -2.79291 | opp_overlap 2542308, overlap 2542298 2542304 2542309 2542327 CATCCATTTTTGCTT CATCAAGGCGAGTT AAT AGCTCGCTTTGATG TGCTTCATCAGCTTT TERM 2942 2542304 - 2542330 + g 84 -12.4 -2.93901 | opp_overlap 2542308, overlap 2542302 2542298 2542309 2542327 TCCATTTTTGCTTCA TCAAGGCGAGTT AAT AGCTCGCTTTGA TGTGCTTCATCAGCT TERM 2943 2542309 - 2542325 + g 77 -8.7 -3.89302 | opp_overlap 2542308, overlap 2542304 2542302 2542298 TTTTGCTTCATCAAG GCGAGTT AAT AGCTCGC TTTGATGTGCTTCAT TERM 2944 2543041 - 2543061 + r 86 -8.3 -4.82333 | opp_overlap 2543041 TGTGTTTAAAAAAAA GGTTACGTA AAA TACGCAACC TTTTTCCATTATTGT TERM 2945 2543061 - 2543041 - R 100 -10.5 -5.75342 | opp_overlap 2543041 TGTGTTTAAAAAAAA GGTTACGTA AAA TACGCAACC TTTTTCCATTATTGT TERM 2946 2543117 - 2543098 - R 71 -6.4 -4.17089 | opp_overlap 2543109 TTTAAAGGCTTAAAA CATCATGC CTTT GCTTGATG CAACCACTTCTTCAC leuO 2544063 - 2543092 - | leucine transcriptional activator TERM 2947 2544359 - 2544341 - R 100 -11.8 -5.30686 | opp_overlap 2544341 AATAGGTACAAAAAA GCCATACA AGG TGTATGGC TTAATAAATATGCAT TERM 2948 2544341 - 2544359 + r 89 -11.8 -3.2056 | opp_overlap 2544341 AATAGGTACAAAAAA GCCATACA AGG TGTATGGC TTAATAAATATGCAT metL 2546806 - 2544389 - | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 2949 2545093 - 2545077 - G 70 -8.7 -3.2963 | opp_overlap 2545086 ATTACCGCTTGATAA TCAGCAC TTG GCGCTGA GCCAGCAACTTTATT metB 2547972 - 2546806 - | cystathionine gamma-synthase metJ 2548321 - 2548641 + | transcriptional repressor protein MetJ TERM 2950 2550590 - 2550580 - g 70 -5.4 -4.3739 | GAGGCCCTTATAAAA TGCA ATA TGCA ACAAAAGGTTGGAGC VF_2269 2548878 - 2550782 + | glycosidase TERM 2951 2550830 - 2550849 + F 74 -9.4 -3.09234 | opp_overlap 2550823 2550817 2550816, overlap 2550821 2550817 ATGAACTATTTCTAA CCAACAAT GTCT ATTGTTGG TTAGATCACATTTCT TERM 2952 2552236 - 2552219 - g 80 -7.7 -4.323 | GCCAAAGATCTAAAA CGCTACA TCGT TGCAGCG CGTCCATCATACAAA VF_2270 2551193 - 2552533 + | hypothetical protein TERM 2953 2552550 - 2552567 + F 100 -10.5 -4.86939 | opp_overlap 2552550 TGAGTTAAAGTGAAA GGCGGCC AAAT GGCTGCC TTTTTGCGTTTATTA TERM 2954 2552567 - 2552550 - f 75 -8.3 -3.85909 | opp_overlap 2552550 TGAGTTAAAGTGAAA GGCGGCC AAAT GGCTGCC TTTTTGCGTTTATTA TERM 2955 2553233 - 2553217 - g 71 -3.7 -4.88067 | AGCTATCGATAAAAA CGCTT TCATTAC AAGCG GATAAACAAGCAGAT VF_2271 2552607 - 2553434 + | maltose operon periplasmic protein precursor TERM 2956 2553457 - 2553485 + T 73 -9 -3.2511 | opp_overlap 2553457, overlap 2553456 CCTAAATAAAAAAAA GCTTCTAACTTA ATTAA TTAGTTAGAAGC CTTTTCTACATAAAA TERM 2957 2553485 - 2553457 - T 100 -9 -6.23545 | opp_overlap 2553457 2553456 CCTAAATAAAAAAAA GCTTCTAACTTA ATTAA TTAGTTAGAAGC CTTTTCTACATAAAA maeB 2554759 - 2553512 - | fused malic enzyme oxidoreductase/ phosphotransacetylase TERM 2958 2555003 - 2554986 - R 100 -9.1 -5.76633 | opp_overlap 2554984 2554986 GCAGATATAAAAAAA GGAGCCC TATT GGACTCC TCTTTTATCGGAAAT TERM 2959 2554986 - 2555003 + r 70 -6.9 -3.79687 | opp_overlap 2554986, overlap 2554984 GCAGATATAAAAAAA GGAGCCC TATT GGACTCC TCTTTTATCGGAAAT rpmE 2555243 - 2555025 - | 50S ribosomal protein L31 TERM 2960 2555346 - 2555318 - H 79 -5.4 -5.08601 | overlap 2555320 GTAGTTTAACAAAAA TAGTAAGCGTAA ATGGA TTACACTTACTT AAGGTCGCGTATAGT TERM 2961 2555344 - 2555320 - H 81 -8 -4.16909 | overlap 2555318 AGTTTAACAAAAATA GTAAGCGTAA ATGGA TTACACTTAC TTAAGGTCGCGTATA TERM 2962 2557101 - 2557075 - g 73 -7.4 -3.99775 | AGCGATTAAGAATAA TGAATACCAAAT TTT AATTGGTACTCA AATGCTAGCAAAAGG priA 2555471 - 2557684 + | primosome assembly protein PriA cytR 2557876 - 2558883 + | DNA-binding transcriptional regulator CytR TERM 2963 2559175 - 2559185 + G 73 -8.2 -3.85899 | opp_overlap 2559169 CCATGGAAAGCGGTT GCCG TTG CGGC TCTTTTAGTTATGGT ftsN 2559031 - 2559630 + | cell division protein FtsN TERM 2964 2559674 - 2559692 + F 90 -8.1 -5.38951 | opp_overlap 2559669 2559674 ACATATTTAATAAAA GGAGCGC ATTGA GTGCTCC TTTTTTCTATCCATT TERM 2965 2559692 - 2559674 - f 77 -5.9 -4.70772 | opp_overlap 2559674, overlap 2559669 ACATATTTAATAAAA GGAGCGC ATTGA GTGCTCC TTTTTTCTATCCATT hslV 2559754 - 2560335 + | ATP-dependent protease peptidase subunit hslU 2560355 - 2561689 + | ATP-dependent protease ATP-binding subunit TERM 2966 2561737 - 2561712 - T 100 -15.5 -4.91473 | opp_overlap 2561712 TAACTTAAAAATAAA GCCTCGCAAGC ATTA ACTTGCGAGGC TTTTTTCTAATCTTT TERM 2967 2561712 - 2561737 + T 100 -14.8 -5.38321 | opp_overlap 2561712 TAACTTAAAAATAAA GCCTCGCAAG CATTAA CTTGCGAGGC TTTTTTCTAATCTTT yhfA 2562169 - 2561765 - | hypothetical protein TERM 2968 2562218 - 2562199 - H 70 -4.3 -4.68645 | overlap 2562200 TACTTAAAAGGAAAA CTCGTGA TCCATT TCACGAA ACTGTGCCCTTGGTC crp 2562415 - 2563047 + | cAMP-regulatory protein TERM 2969 2563105 - 2563068 - T 75 -10 -2.64099 | opp_overlap 2563078, overlap 2563072 2563078 CGTCGTTACCATAAG CAAATAAAAACGCAGC TCAATG GCTGCGTTTTTTTATG TCCAAAGATAACAAC TERM 2970 2563101 - 2563072 - T 85 -9.4 -4.02108 | opp_overlap 2563078, overlap 2563068 2563078 GTTACCATAAGCAAA TAAAAACGCAGC TCAATG GCTGCGTTTTTT TATGTCCAAAGATAA TERM 2971 2563078 - 2563095 + T 100 -9.1 -5.71712 | opp_overlap 2563078 2563072 2563068 ATAAGCAAATAAAAA CGCAGCT CAAT GGCTGCG TTTTTTTATGTCCAA TERM 2972 2563095 - 2563078 - T 90 -8.4 -5.39681 | opp_overlap 2563078, overlap 2563072 2563068 ATAAGCAAATAAAAA CGCAGC TCAATG GCTGCG TTTTTTTATGTCCAA VF_2281 2563916 - 2563122 - | hypothetical protein astD 2565385 - 2563928 - | succinylglutamic semialdehyde dehydrogenase astA 2566414 - 2565398 - | arginine succinyltransferase TERM 2973 2566443 - 2566464 + r 81 -10.9 -2.90309 | opp_overlap 2566443, overlap 2566440 GATGCCAAAAACAAA GGCAACTCG ACCA TGAGTTGCC TAATATTCTTTAAAG TERM 2974 2566464 - 2566443 - R 100 -10.2 -4.87389 | opp_overlap 2566443 2566440 GATGCCAAAAACAAA GGCAACTC GACCAT GAGTTGCC TAATATTCTTTAAAG argD 2567696 - 2566482 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 2975 2567815 - 2567826 + r 76 -4.4 -5.07053 | opp_overlap 2567815 GATACAATTCAATGA CTGA TAAA TCAG TTTTTTAGAATAGTT pabA 2568579 - 2568001 - | para-aminobenzoate synthase component II TERM 2976 2568640 - 2568615 - R 100 -14.1 -5.54907 | opp_overlap 2568615 TGGATAAAATAAAAA TTGCTCGCAGG TCAG CCTACGAGCAA TTGATGGAACTTAAA TERM 2977 2568615 - 2568640 + r 89 -11.9 -3.16742 | opp_overlap 2568615 TGGATAAAATAAAAA TTGCTCGCAGG TCAG CCTACGAGCAA TTGATGGAACTTAAA trpS 2569684 - 2568668 - | tryptophanyl-tRNA synthetase TERM 2978 2569714 - 2569741 + r 77 -10.1 -3.02314 | opp_overlap 2569714, overlap 2569711 2569708 2569719 GTTTAACTGTAAAAA TTAAATGATCC ACTGTG GGATCATTTAA TGGTTATTCTATATA TERM 2979 2569741 - 2569714 - R 100 -10.1 -4.66833 | opp_overlap 2569714 2569711 2569708 2569719 GTTTAACTGTAAAAA TTAAATGATCC ACTGTG GGATCATTTAA TGGTTATTCTATATA gph 2570487 - 2569804 - | phosphoglycolate phosphatase TERM 2980 2570448 - 2570426 - G 72 -9.9 -2.94144 | overlap 2570430 GCTCGAGCTAAATCA GGAACGCTA TCAAG TAGCGTCCC ATCTAAATCAAAAGC rpe 2571170 - 2570493 - | ribulose-phosphate 3-epimerase TERM 2981 2571242 - 2571218 - R 83 -10.7 -2.98088 | opp_overlap 2571216, overlap 2571210 CGCTAAATTGATATA GCGCAATCGAT TAA ATCGACGGCGC AATTCTACCTGATAT dam 2572168 - 2571338 - | DNA adenine methylase TERM 2982 2571934 - 2571961 + g 82 -10.6 -3.46285 | opp_overlap 2571932 2571933, overlap 2571930 CTGGTTGAAATAACG CTCGAGCGTCTT CAAT AAAACGCTCGGG TTCATCTTTAAGGTG VF_2290 2573774 - 2572251 - | hypothetical protein TERM 2983 2572597 - 2572610 + g 80 -2.4 -5.59655 | GTTACTGTAGAAGCC GATG TTTTTT CATC TTTTTTCTTACTTTC aroB 2574871 - 2573783 - | 3-dehydroquinate synthase TERM 2984 2574820 - 2574792 - G 93 -10.9 -4.85129 | overlap 2574793 ATTACAGATGAAAAA TGCGCCGGGTTGC AAA ACAACTCGGCGCC GATAGAGATGGGATA TERM 2985 2574819 - 2574793 - G 100 -14.4 -3.49993 | overlap 2574792 TTACAGATGAAAAAT GCGCCGGGTTGC AAA ACAACTCGGCGC CGATAGAGATGGGAT aroK 2575426 - 2574908 - | shikimate kinase I pilQ 2577399 - 2575651 - | pili ecretion protein PilQ TERM 2986 2576648 - 2576674 + g 73 -10.2 -2.87136 | opp_overlap 2576641, overlap 2576652 TCAGATGATAGCGCA GCCAGCTCAGAT GCC ATTTGAGCTTGC TCTAATACTTGCTGC pilP 2577944 - 2577426 - | pili assembly protein PilP pilO 2578515 - 2577937 - | pili assembly protein PilO pilN 2579081 - 2578515 - | pili assembly protein PilN pilM 2580067 - 2579066 - | pili assembly protein PilM mrcA 2580202 - 2582700 + | fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase TERM 2987 2582749 - 2582726 - T 100 -12.5 -5.08601 | opp_overlap 2582726 TCACTTTAATAAAAA GGCACGCTA CATATC TAGCGTGCC TTTTTTATAAGCTTA TERM 2988 2582726 - 2582749 + T 100 -12.5 -5.27923 | opp_overlap 2582726 TCACTTTAATAAAAA GGCACGCTA CATATC TAGCGTGCC TTTTTTATAAGCTTA oxyR 2583666 - 2582767 - | DNA-binding transcriptional regulator OxyR VF_2300 2583847 - 2584575 + | glutaredoxin TERM 2989 2584600 - 2584624 + F 75 -10 -2.76583 | opp_overlap 2584601, overlap 2584599 TAACCGTTAATGAAA AGTAGCCCAC AAACC GTGGGCTACC ATTTCAAACTCTTCT TERM 2990 2584623 - 2584601 - f 100 -14.2 -4.41895 | opp_overlap 2584600 2584599 AACCGTTAATGAAAA GTAGCCCACA AAC CGTGGGCTAC CATTTCAAACTCTTC VF_2301 2584670 - 2586136 + | dihydrolipoamide dehydrogenase TERM 2991 2586164 - 2586185 + F 100 -9.5 -4.81249 | opp_overlap 2586164 GTCCAAAAATAAAAA GACCAATGT TTGC GCATTGGTC TTTTTGCATTTAAAG TERM 2992 2586185 - 2586164 - f 95 -8.8 -5.61881 | opp_overlap 2586164 GTCCAAAAATAAAAA GACCAATG TTTGCG CATTGGTC TTTTTGCATTTAAAG VF_2302 2586238 - 2586486 + | hypothetical protein TERM 2993 2586500 - 2586528 + T 71 -8.9 -3.1162 | opp_overlap 2586501 GAGCAGATAAAATAA AGCCCCAATAC CATATAA GTATTGGGGCC TCTTAGAATCTTTCT TERM 2994 2586527 - 2586501 - T 100 -13.1 -4.84146 | opp_overlap 2586500 AGCAGATAAAATAAA GCCCCAATACC ATATA AGTATTGGGGC CTCTTAGAATCTTTC argH 2588528 - 2586654 - | bifunctional argininosuccinate lyase/N-acetylglutamate synthase TERM 2995 2588771 - 2588741 - R 100 -14.9 -5.4251 | opp_overlap 2588739 GTTACATACAAAAAA TCGAAGCCCGTTT ATATA AAACGAGCTTCGA CATAGTGTAAAACAA argG 2590037 - 2588826 - | argininosuccinate synthetase argB 2590876 - 2590094 - | acetylglutamate kinase argC 2591896 - 2590892 - | N-acetyl-gamma-glutamyl-phosphate reductase argE 2592105 - 2593241 + | acetylornithine deacetylase ppc 2593421 - 2596051 + | phosphoenolpyruvate carboxylase TERM 2996 2596087 - 2596102 + T 95 -6.8 -5.95286 | opp_overlap 2596087 TCCTTCCTAATTAAA GGTCAC TTCG GTGGCC TTTTTTATTTTTACT TERM 2997 2596177 - 2596160 - T 95 -4.8 -6.20267 | opp_overlap 2596160 TCAAAAACAAAAAAA GCCGCT ACCATG AGCGAC TTTGATATGATTAAT metF 2597088 - 2596201 - | 5,10-methylenetetrahydrofolate reductase TERM 2998 2597330 - 2597311 - R 100 -10 -6.15717 | opp_overlap 2597311 TAAAGATAAAAAAAA CGCCAGTC CGAG GACTAGCG TTTTAAATCATAAGT TERM 2999 2597311 - 2597330 + r 78 -7.8 -4.21462 | opp_overlap 2597311 TAAAGATAAAAAAAA CGCCAGTC CGAG GACTAGCG TTTTAAATCATAAGT rplI 2597805 - 2597356 - | 50S ribosomal protein L9 TERM 3000 2597752 - 2597780 + g 70 -5.9 -4.4009 | overlap 2597754 AGCTTTAACGTTAAC TTGGTCGCCAAGG CTA CCTAGGTTACCGA TTTTATCAAGTAGAA rpsR 2598073 - 2597846 - | 30S ribosomal protein S18 TERM 3001 2598026 - 2598046 + g 72 -8.3 -3.53012 | AATCTCTTGTACGCC TTCTGCAGT AAA ACGGCAGAA TTTACGACGACGGAA VF_2656 2598244 - 2598089 - | primosomal replication protein N rpsF 2598782 - 2598402 - | 30S ribosomal protein S6 TERM 3002 2598978 - 2598959 - R 91 -4.3 -5.84381 | opp_overlap 2598959 TTACCAAGAAAAAAA GAGAATG AAAAAA CATCCTC TTTTTTGAGCTTATT rlmB 2599783 - 2599037 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 3003 2599840 - 2599822 - R 71 -7.4 -3.64822 | opp_overlap 2599822 ATTTGTTTATCTAAA TGGGGC TATAACC GCCCCA TTATCGAAATTACTT rnr 2602357 - 2599850 - | exoribonuclease R, RNase R TERM 3004 2600082 - 2600101 + g 72 -3.4 -5.15117 | overlap 2600076 AAATTAGGATCACGA CGTGGCTC TTTT GCACCACG TTTTTTCGCATTTTC TERM 3005 2602320 - 2602337 + g 71 -6.3 -4.23723 | TATTTTTCAGCTTCT CGATCTT GAAA AGGATCG TTTTGAATAATCTTA nsrR 2602876 - 2602451 - | transcriptional repressor NsrR hmp 2602983 - 2604167 + | nitric oxide dioxygenase TERM 3006 2604193 - 2604217 + T 100 -14.4 -5.10029 | opp_overlap 2604193 GTAGAAATGCAAAAA CGCCCAATGA CATAA TCATTGGGCG TTTTTTCGAGTTGAT TERM 3007 2604217 - 2604193 - T 100 -15.1 -4.84529 | opp_overlap 2604193 GTAGAAATGCAAAAA CGCCCAATGAC ATA ATCATTGGGCG TTTTTTCGAGTTGAT motX 2604901 - 2604269 - | flagellar motor protein MotX TERM 3008 2604816 - 2604835 + g 75 -10 -3.08133 | opp_overlap 2604815, overlap 2604818 2604820 TTTTCGGTATAAATT GGGATCGG CTCT CCGATCTC TTCGCTAGCTGCATA TERM 3009 2604818 - 2604833 + g 70 -9 -3.09878 | opp_overlap 2604815, overlap 2604816 2604820 TTCGGTATAAATTGG GATCGG CTCT CCGATC TCTTCGCTAGCTGCA TERM 3010 2604880 - 2604895 + g 71 -7.6 -3.85704 | overlap 2604877 CCACCAAACATGCCG CTACGA GGTG TCGTAG TTTCATAATTCATCA TERM 3011 2604968 - 2604983 + r 75 -4.7 -5.02074 | opp_overlap 2604968 ATCTTTAGACAAAAT TTGCC CTAAGT GGCAA TTTTTTGCCCACTAG TERM 3012 2605143 - 2605111 - R 71 -8.6 -3.00923 | opp_overlap 2605113 2605119, overlap 2605119 CTGGAATACCAGACA TAAAAAAACCAGCT ACATG AGCTGGTTTTTCTT TCATTCACTAAGCGA TERM 3013 2605113 - 2605141 + r 82 -9 -3.93288 | opp_overlap 2605111 2605119, overlap 2605119 GGAATACCAGACATA AAAAAACCAGCT ACATG AGCTGGTTTTTC TTTCATTCACTAAGC TERM 3014 2605119 - 2605135 + r 90 -8 -5.38326 | opp_overlap 2605111 2605119, overlap 2605113 CCAGACATAAAAAAA CCAGCT ACATG AGCTGG TTTTTCTTTCATTCA TERM 3015 2605135 - 2605119 - R 93 -8 -5.76633 | opp_overlap 2605119 2605113, overlap 2605111 CCAGACATAAAAAAA CCAGCT ACATG AGCTGG TTTTTCTTTCATTCA purA 2606475 - 2605159 - | adenylosuccinate synthetase TERM 3016 2605963 - 2605986 + g 84 -8.2 -4.77757 | overlap 2605941 GTAGTTAACTAATGC GAAGTTATGG AATT CCATTACTTC TTTTAGTTTTTCAGC VF_2319 2606838 - 2606653 - | hypothetical protein TERM 3017 2606881 - 2606906 + r 74 -6.1 -4.48823 | opp_overlap 2606884, overlap 2606884 TATACGCTAAATACA AAACAAGGCCC CGAA GGACCTTGTTA TTTTATACGTTAATT TERM 3018 2606884 - 2606903 + r 81 -7.8 -4.34789 | opp_overlap 2606884, overlap 2606881 ACGCTAAATACAAAA CAAGGCCC CGAA GGACCTTG TTATTTTATACGTTA TERM 3019 2606903 - 2606884 - R 100 -10 -4.79451 | opp_overlap 2606884 2606881 ACGCTAAATACAAAA CAAGGCCC CGAA GGACCTTG TTATTTTATACGTTA hflC 2607820 - 2606936 - | modulator for HflB protease specific for phage lambda cII repressor TERM 3020 2607554 - 2607565 + g 76 -2.2 -5.37043 | CTTAACATATGAGTC GATG ATAA CGTC TTTTTTCTCTGACGT hflK 2609028 - 2607823 - | modulator for HflB protease specific for phage lambda cII repressor TERM 3021 2608286 - 2608302 + g 71 -5.1 -4.56133 | TCTCGAGCTGCAATT GCATCAT CAA ATGACGC TTTTACTTGTTCAGG TERM 3022 2608946 - 2608960 + g 81 -5.6 -5.06414 | opp_overlap 2608920 TCTGGTGGACCTTGA TCACGG CCA CCGCGA TTTTTATTACCCCAA hflX 2610366 - 2609065 - | putative GTPase HflX hfq 2610672 - 2610406 - | RNA-binding protein Hfq miaA 2611709 - 2610777 - | tRNA delta(2)-isopentenylpyrophosphate transferase mutL 2613684 - 2611702 - | DNA mismatch repair protein TERM 3023 2612749 - 2612729 - G 79 -5.4 -4.86731 | opp_overlap 2612733 GCTTGGTAAATAAAA TCATGCAC TAATC GTGCTTGA TGAAAACGTACCTCG TERM 3024 2612835 - 2612823 - G 70 -2.7 -5.09762 | TCTCAATAAATAAAA TATAC GCT GCATA TTGGTTTGCAGGCAA TERM 3025 2613275 - 2613235 - G 78 -4 -5.1861 | gap 1 TGGAGTATTAAAAAA CAGATCAACCACATCGATA GTCG TTCCGATG-GGATGAGCTG CTGGCTTTAATTTCA TERM 3026 2613552 - 2613586 + g 93 -11.5 -4.40572 | opp_overlap 2613555, overlap 2613555 CACCTTTTTCGATAT CAATATCGATGCGAG TTGCT CCCGCATCGATACTG TTTTCTACCAATTCT TERM 3027 2613555 - 2613583 + g 81 -11.8 -2.87598 | opp_overlap 2613555, overlap 2613552 CTTTTTCGATATCAA TATCGATGCGAG TTGCT CCCGCATCGATA CTGTTTTCTACCAAT TERM 3028 2613583 - 2613555 - G 93 -14 -3.25823 | opp_overlap 2613555 2613552 CTTTTTCGATATCAA TATCGATGCGAG TTGCT CCCGCATCGATA CTGTTTTCTACCAAT amiB 2615426 - 2613696 - | N-acetylmuramoyl-l-alanine amidase II TERM 3029 2615388 - 2615361 - G 95 -9.3 -5.4251 | TGCAGATACAAAAAA GCTACTTGTTG AAAGAA CAACAAATAGC GTATACCAAATAATT yjeE 2615884 - 2615420 - | ATPase with strong ADP affinity yjeS 2616097 - 2617212 + | Fe-S electron transport protein TERM 3030 2617700 - 2617719 + T 79 -8 -4.08216 | GGATTTGTAGTGGGG TTAATGCT TCAC AGCATTAA TTTTAAAGAAAATAA TERM 3031 2617762 - 2617732 - T 100 -18.6 -4.90525 | opp_overlap 2617732 2617737, overlap 2617737 TAATTTTAAAGAAAA TAAAAGCGCTGAAT ATG ATTCAGCGCTTTTA TTAAGTTTGGAGCGA TERM 3032 2617732 - 2617762 + T 100 -18.6 -3.27525 | opp_overlap 2617732 2617737, overlap 2617737 TAATTTTAAAGAAAA TAAAAGCGCTGAAT ATG ATTCAGCGCTTTTA TTAAGTTTGGAGCGA TERM 3033 2617757 - 2617737 - T 100 -14.1 -5.34857 | opp_overlap 2617732 2617737, overlap 2617732 TTAAAGAAAATAAAA GCGCTGAAT ATG ATTCAGCGC TTTTATTAAGTTTGG TERM 3034 2617737 - 2617757 + T 100 -14.1 -4.75309 | opp_overlap 2617737 2617732, overlap 2617732 TTAAAGAAAATAAAA GCGCTGAAT ATG ATTCAGCGC TTTTATTAAGTTTGG TERM 3035 2618658 - 2618699 + T 100 -11.3 -4.62069 | gap 1, opp_overlap 2618659 2618677 2618678, overlap 2618659 AACTGTGATGATGCA AGCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGCG TTTTTCCGCTCAACA TERM 3036 2618698 - 2618659 - T 95 -14.8 -3.09635 | gap 1, opp_overlap 2618658 2618659, overlap 2618677 2618678 ACTGTGATGATGCAA GCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGC GTTTTTCCGCTCAAC TERM 3037 2618659 - 2618698 + T 100 -14.8 -3.3692 | gap 1, opp_overlap 2618659 2618677 2618678, overlap 2618658 ACTGTGATGATGCAA GCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGC GTTTTTCCGCTCAAC TERM 3038 2618699 - 2618677 - T 86 -4.9 -5.76949 | opp_overlap 2618659 2618658, overlap 2618659 2618678 TATTTTGAAAAAAAA TGCGATTTT TTTTC AAAATCGCG TTTTTCCGCTCAACA TERM 3039 2618698 - 2618678 - T 79 -8.4 -4.05085 | opp_overlap 2618659 2618658, overlap 2618659 2618677 ATTTTGAAAAAAAAT GCGATTTT TTTTC AAAATCGC GTTTTTCCGCTCAAC orn 2619275 - 2618730 - | oligoribonuclease rsgA 2619374 - 2620438 + | ribosome-associated GTPase psd 2620518 - 2621381 + | phosphatidylserine decarboxylase TERM 3040 2621407 - 2621427 + F 100 -12.7 -5.88197 | opp_overlap 2621407 TTAAGAAATAATAAA TAGCGAACA ATA TGTTCGCTA TTTTTTTATCTTTAG TERM 3041 2621427 - 2621407 - f 100 -12.7 -4.67968 | opp_overlap 2621407 TTAAGAAATAATAAA TAGCGAACA ATA TGTTCGCTA TTTTTTTATCTTTAG TERM 3042 2622324 - 2622296 - g 88 -3.8 -5.76633 | opp_overlap 2622296 TTATATACAAAAAAA GCACCGAACC GCTTTGCAT GGCTTGGTGC TTTTTTAGCTGTAAT TERM 3043 2622296 - 2622324 + G 76 -4.5 -5.13473 | opp_overlap 2622296 TTATATACAAAAAAA GCACCGAACCG CTTTGCA TGGCTTGGTGC TTTTTTAGCTGTAAT VF_2332 2621474 - 2622364 + | drug/metabolite exporter family protein poxA 2623387 - 2622401 - | lysyl-tRNA synthetase TERM 3044 2624971 - 2624983 + G 70 -7.7 -3.68988 | CTAGGTTCAAACTCT CTAGC TGA GCTAG TTGTATTCGGTCGCC TERM 3045 2625029 - 2625013 - g 71 -5 -4.56597 | opp_overlap 2625013, overlap 2625015 CTTGCTGGTGAAAAA GCCGCG GAACG CGCTGC TGAATTCACATCTTG frdA 2623783 - 2625588 + | fumarate reductase flavoprotein subunit frdB 2625588 - 2626331 + | fumarate reductase iron-sulfur subunit frdC 2626334 - 2626717 + | fumarate reductase subunit C frdD 2626669 - 2627091 + | fumarate reductase subunit D TERM 3046 2627102 - 2627144 + T 81 -11 -2.71268 | gap 2, opp_overlap 2627115, overlap 2627115 TCTAATCATCATCTA GATACGAAAAAAAGGTTGGC TTTAT GCCAACC-TTTTTT-GTATC TGCTATGTAATAAAA TERM 3047 2627133 - 2627115 - T 100 -10.3 -5.60864 | opp_overlap 2627102 2627115 TAGATACGAAAAAAA GGTTGGC TTTAT GCCAACC TTTTTTGTATCTGCT TERM 3048 2627115 - 2627133 + T 100 -10.3 -5.43414 | opp_overlap 2627115, overlap 2627102 TAGATACGAAAAAAA GGTTGGC TTTAT GCCAACC TTTTTTGTATCTGCT TERM 3049 2627184 - 2627155 - T 71 -8.7 -3.05816 | opp_overlap 2627162, overlap 2627162 GTATCTGCTATGTAA TAAAAAAGGCCAC CGAA GTGACCTTTTATA CCATTCTGGATAAGT TERM 3050 2627177 - 2627162 - T 87 -6.8 -5.4833 | opp_overlap 2627162, overlap 2627155 CTATGTAATAAAAAA GGCCAC CGAA GTGACC TTTTATACCATTCTG efp 2627941 - 2627375 - | elongation factor P TERM 3051 2627472 - 2627458 - G 70 -8.6 -3.37513 | opp_overlap 2627452 2627448 2627466 ATAGTGGAACACGAA CTACTG CAC CAGTAG ATAGTGTTGCTGGTT yjeK 2627974 - 2628996 + | lysine aminomutase TERM 3052 2629031 - 2629014 - T 100 -11.3 -5.65177 | opp_overlap 2629014 ACAGGCATAAAAAAA CCGAAGC ACTC GCTTCGG TTTTTTGTGTCTAGA TERM 3053 2629014 - 2629031 + T 100 -11.3 -5.4251 | opp_overlap 2629014 ACAGGCATAAAAAAA CCGAAGC ACTC GCTTCGG TTTTTTGTGTCTAGA pfkA 2630022 - 2629060 - | 6-phosphofructokinase TERM 3054 2629142 - 2629156 + g 76 -7.2 -4.18018 | TCGATGATATCGTGG TGAACA AGT TGTTCA TTTTGAATACCAACA fieF 2631148 - 2630243 - | ferrous iron efflux protein F TERM 3055 2630626 - 2630608 - G 74 -5.3 -4.7629 | overlap 2630610 2630613 TCACTAAGGCAAAAA TAGCATC GGCTT GATGCCA ACCGTACCAGCTTAA TERM 3056 2631129 - 2631085 - G 81 -7.2 -4.52347 | opp_overlap 2631097, overlap 2631079 TAAATAACATTAAAA CCGTAGCAACTATGGTTGCA AGCCA TGCAGCCATTGTTACTAAAG AGGCGTATTTCTGAG TERM 3057 2631280 - 2631255 - R 100 -8.3 -6.02919 | opp_overlap 2631255 GCATAAACAAAAAAA CGAGCCCCTAC TTTC ATAAGGACTCG TTTCATTTTTATTCG cpxP 2631591 - 2631307 - | periplasmic protein CpxP, modulator of CpxAR signaling cpxR 2632004 - 2632687 + | DNA-binding response regulator in two-component regulatory system with CpxA cpxA 2632691 - 2634079 + | two-component sensor protein yibK 2634201 - 2634680 + | rRNA methylase TERM 3058 2634732 - 2634713 - T 100 -10.8 -5.03994 | opp_overlap 2634713 CTTCAGATACAAAAA TAGCCACT CTAT AGTGGCTA TTTTTATGCGTATTC TERM 3059 2634713 - 2634732 + T 100 -10.8 -4.91459 | opp_overlap 2634713 CTTCAGATACAAAAA TAGCCACT CTAT AGTGGCTA TTTTTATGCGTATTC cysE 2635601 - 2634780 - | serine acetyltransferase gpsA 2636651 - 2635620 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 3060 2636806 - 2636837 + r 72 -8 -3.33711 | GCTATTCATTATTAT GCTTCAGAAGGCGC AGCT GCGTTTTCTTGAGC TTGGCTTTGTAGGTA secB 2637272 - 2636802 - | preprotein translocase subunit SecB yibN 2637896 - 2637402 - | rhodanese-related sulfurtransferase envC 2638062 - 2639207 + | protease with a role in cell division TERM 3061 2639245 - 2639219 - T 86 -12.4 -2.77051 | opp_overlap 2639225, overlap 2639225 CTAACAATGAAATAC TAAAAAGCCGCA TAA TGCGGCTTTTTT ATTTAATTCGATAAA TERM 3062 2639225 - 2639239 + T 100 -11.4 -5.72053 | opp_overlap 2639225 2639219 ATGAAATACTAAAAA GCCGCA TAA TGCGGC TTTTTTATTTAATTC TERM 3063 2639239 - 2639225 - T 100 -11.4 -4.946 | opp_overlap 2639225, overlap 2639219 ATGAAATACTAAAAA GCCGCA TAA TGCGGC TTTTTTATTTAATTC fxsA 2639782 - 2639270 - | FxsA aspA 2640236 - 2641687 + | aspartate ammonia-lyase TERM 3064 2641704 - 2641723 + F 100 -11.4 -6.02919 | opp_overlap 2641704 TCTTAACGTTCAATA GCGAGCTC TCAG GGGCTCGC TTTTTTTATTTGTAA TERM 3065 2641723 - 2641704 - f 74 -9.2 -3.06261 | opp_overlap 2641704 TCTTAACGTTCAATA GCGAGCTC TCAG GGGCTCGC TTTTTTTATTTGTAA TERM 3066 2642227 - 2642215 - g 71 -6.3 -4.14392 | GCTGAAGTTGCAAAA GAACA AGG TGTTC GTCCATCTCGCCCAC dcuA 2641852 - 2643153 + | anaerobic C4-dicarboxylate transporter TERM 3067 2643183 - 2643203 + T 100 -11.2 -5.82281 | opp_overlap 2643183 TAATATCCCTCAAAA TGGCAGCT GATTA AGCTGCCA TTTTTTTATGTCTTT TERM 3068 2643203 - 2643183 - T 100 -11.2 -4.11371 | opp_overlap 2643183 TAATATCCCTCAAAA TGGCAGCT GATTA AGCTGCCA TTTTTTTATGTCTTT VF_2355 2643642 - 2643217 - | universal stress protein A TERM 3069 2644143 - 2644156 + G 83 -5.3 -5.20216 | opp_overlap 2644133 2644140 TGGAAGATGGAACCC CTCAT AATG ATGAG TTTTTTGGTGATGTG TERM 3070 2644456 - 2644431 - g 74 -4.7 -4.93696 | CTGAAACACCAAAAA CGCAAACTC AACAACAA GAGTTAGCG ACCAATTTAGGTGAT TERM 3071 2644956 - 2644967 + G 73 -7.2 -4.02334 | opp_overlap 2644955 GAGACTTACTAACAG GGGC TATT GCCC TTTATGCTCTGGCTA TERM 3072 2645364 - 2645349 - g 78 -2.6 -5.42259 | TGACCTTTAAAAAAA TCACTA ATAT TAATGA GTTAAACCAAGAACT dipZ 2643857 - 2645704 + | thiol:disulfide interchange protein precursor nagB 2645813 - 2646613 + | glucosamine-6-phosphate deaminase TERM 3073 2646680 - 2646639 - T 93 -9.8 -4.1673 | gap 1, opp_overlap 2646652, overlap 2646652 TAATTTCGCAATAAA TTAAACAAAAAAACCACCG TTTAT CGGTGGTTTTTTT-TGTAA TAAAAAAAAGCTAAA TERM 3074 2646668 - 2646652 - T 100 -9.4 -6.01187 | opp_overlap 2646652, overlap 2646639 AATTAAACAAAAAAA CCACCG TTTAT CGGTGG TTTTTTTTGTAATAA TERM 3075 2646652 - 2646668 + T 100 -9.4 -5.9873 | opp_overlap 2646652 2646639 AATTAAACAAAAAAA CCACCG TTTAT CGGTGG TTTTTTTTGTAATAA VF_2358 2647930 - 2646725 - | major facilitator transporter TERM 3076 2647984 - 2647955 - R 95 -8.7 -5.27335 | gap 1, opp_overlap 2647955 CTGTTTAAATAAAAA GATCTCAGA-AGCA CAT CGCTTTCTGAGACC TTATCTAAAACACAT VF_2359 2648496 - 2647999 - | protein tyrosine phosphatase gapA2 2649526 - 2648525 - | glyceraldehyde-3-phosphate dehydrogenase arsR 2649868 - 2649539 - | DNA-binding transcriptional repressor yeaP 2650097 - 2651092 + | GGDEF domain-containing protein VF_2363 2652288 - 2651101 - | hypothetical protein VF_2364 2652687 - 2653913 + | NADH dehydrogenase TERM 3077 2653944 - 2653967 + T 100 -12.5 -5.1356 | opp_overlap 2653944 GAGATAAATAAAAAA CGGCAACCT TATTTT AGGTTGCCG TTTTTATTGGTAAGA TERM 3078 2653967 - 2653944 - T 100 -12.5 -5.76237 | opp_overlap 2653944 GAGATAAATAAAAAA CGGCAACCT TATTTT AGGTTGCCG TTTTTATTGGTAAGA znuA2 2654956 - 2653991 - | high-affinity zinc uptake system protein ZnuA2 TERM 3079 2654210 - 2654224 + g 70 -7.8 -3.6682 | overlap 2654211 ACGAATGTCTGTAAT TCGAGC AGG GCTCGG TTTAGATGCATCAGA TERM 3080 2655041 - 2655012 - H 100 -12.5 -4.09739 | opp_overlap 2655016 CCAAGGTTGGCAAAA TTAATTGTTATGT TATA ACATAACAATTAA ATAGCCATATTGAAA TERM 3081 2655016 - 2655037 + H 71 -8.9 -3.06679 | opp_overlap 2655012 GGTTGGCAAAATTAA TTGTTATGT TATA ACATAACAA TTAAATAGCCATATT znuC2 2655108 - 2655839 + | high-affinity zinc uptake system ATP-binding protein ZnuC2 TERM 3082 2655883 - 2655903 + G 71 -6.1 -4.14056 | opp_overlap 2655883 GTTGGTGTAACATTA GCAGCCG CCCCTCT TGGCTGC TTTATCGTTTGGCGT znuB2 2655829 - 2656650 + | high-affinity zinc uptake system membrane protein ZnuB2 VF_2369 2656704 - 2657264 + | carbonic anhydrase yeiR 2657254 - 2658276 + | hypothetical protein TERM 3083 2658342 - 2658368 + T 86 -8.1 -4.83169 | gap 1, opp_overlap 2658342 TCTAGATATGAAAAA TGGCAGCG-TAT ATAA GTAGCGCTGCCA TTTTTGTAAGAAGCT TERM 3084 2658368 - 2658342 - T 88 -7.4 -4.84527 | gap 1, opp_overlap 2658342 TCTAGATATGAAAAA TGGCAGCG-TA TATAAG TAGCGCTGCCA TTTTTGTAAGAAGCT glmS 2660220 - 2658388 - | D-fructose-6-phosphate amidotransferase srlR 2661074 - 2660313 - | DNA-bindng transcriptional repressor TERM 3085 2661750 - 2661740 - g 79 -5.4 -4.88067 | ATTTAGCGACAAAAA TAGC CGC GCTA ACGCCTCAGCAATAT VF_2374 2661301 - 2661930 + | two-component response regulator ychE 2662055 - 2662678 + | inner membrane protein TERM 3086 2662746 - 2662762 + F 84 -5.8 -5.38054 | opp_overlap 2662746 CCACTTCACATAAAA CGCTCA TATTT TGGGCG TTTTTCTTTATCCGC VF_2376 2662862 - 2663128 + | hypothetical protein TERM 3087 2664386 - 2664376 - g 73 -6.8 -4.2123 | GATTTATTGAAGAAA GGCT TTA AGCC TAACATGACCGACAA VF_2377 2663140 - 2664843 + | hypothetical protein TERM 3088 2664877 - 2664900 + T 100 -11 -5.45652 | opp_overlap 2664877 GACTTAAATGAATAA GGGAGTAAGC AAAT GCTAACTCCC TTTTTTATTAAAAAT TERM 3089 2664900 - 2664877 - T 93 -11 -3.90425 | opp_overlap 2664877 GACTTAAATGAATAA GGGAGTAAGC AAAT GCTAACTCCC TTTTTTATTAAAAAT VF_2379 2668361 - 2664921 - | sensory transduction protein kinase TERM 3090 2667405 - 2667393 - G 71 -6.2 -4.15222 | opp_overlap 2667393 2667392 AGTCCCTCCAACAAA GGCG AGCAA CGCC ATATTCTCTGCACCG TERM 3091 2668439 - 2668401 - R 80 -4.7 -5.38047 | gap 1, opp_overlap 2668401 2668401, overlap 2668383 TAGCGATATAAAAAA CGCCAGAA-GGTGC ATTTATTCTGTA GCACCATTCTAGCG TTTAATTATTGCTTC hcaT 2669746 - 2668481 - | putative 3-phenylpropionic acid transporter TERM 3092 2669378 - 2669363 - G 70 -3.2 -4.90266 | CCCATTAACTAAAAA GAGAGC AAGG GCTATC AAAGAAGCTAAGGTT TERM 3093 2671543 - 2671532 - g 80 -2.2 -5.59534 | AACTACAAGAAAAAA CTGG TATT CCAA GTAACCATATTCATA VF_2381 2669830 - 2671662 + | cyclic nucleotide binding protein/CBS domain-containing proteins VF_2382 2671666 - 2672307 + | DNA polymerase III subunit epsilon acs 2672512 - 2674461 + | acetyl-CoA synthetase TERM 3094 2674514 - 2674538 + F 100 -12.3 -5.21709 | opp_overlap 2674514 AAATTTTAATTAAAA GTCATCATAGA TTT TCTGTGATGAC TTTTTTGATGTGACG TERM 3095 2674538 - 2674514 - f 100 -10.1 -4.43911 | opp_overlap 2674514 AAATTTTAATTAAAA GTCATCATAGA TTT TCTGTGATGAC TTTTTTGATGTGACG VF_2385 2674869 - 2675366 + | 3-dehydroquinate dehydratase accB 2675397 - 2675855 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit accC 2675867 - 2677210 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 3096 2677282 - 2677240 - f 93 -10.1 -4.21772 | gap 1, opp_overlap 2677249, overlap 2677234 2677237 2677249 TTCAATAAATAAGAA CGAATTAAAGACGGTGAGTA TGAT TACTCACCGTCTTTTTTT-G TGTTAAAATCGCCCA TERM 3097 2677249 - 2677274 + F 100 -16.3 -5.80817 | opp_overlap 2677249 2677240 2677234 2677237 TAAGAACGAATTAAA GACGGTGAGTA TGAT TACTCACCGTC TTTTTTTGTGTTAAA TERM 3098 2677274 - 2677249 - f 100 -16.3 -4.04141 | opp_overlap 2677249, overlap 2677240 2677234 2677237 TAAGAACGAATTAAA GACGGTGAGTA TGAT TACTCACCGTC TTTTTTTGTGTTAAA prmA 2677327 - 2678211 + | ribosomal protein L11 methyltransferase TERM 3099 2679193 - 2679212 + GF 72 -4.3 -4.68593 | overlap 2679194 GCCATGTTCATGCGC TTCACCA ATTTTA TGGTGAG TTTTTAGGTCCTCGC dusB 2678316 - 2679365 + | tRNA-dihydrouridine synthase B fis 2679310 - 2679684 + | DNA-binding protein Fis TERM 3100 2679695 - 2679670 - T 80 -4.7 -5.25805 | overlap 2679673 AAGAAACTTAAAAAA TACGGCATGAA CTAA TCCACGCCTTA TTTGAAAAATTTAAA TERM 3101 2679734 - 2679711 - T 79 -8.2 -3.99805 | opp_overlap 2679711 TTTGAAAAATTTAAA GCAGTGTTAA GCAA TTAACGCTGC TTTTTTATATCTGCC TERM 3102 2679711 - 2679734 + T 100 -10.4 -5.4251 | opp_overlap 2679711 TTTGAAAAATTTAAA GCAGTGTTAA GCAA TTAACGCTGC TTTTTTATATCTGCC TERM 3103 2679823 - 2679847 + T 100 -9.4 -5.39905 | gap 1, opp_overlap 2679823 ACAGATATAAAAAAA CCGATAC-GCA TTGC TGCTGTATCGG TTTTTCTTGTTTACT TERM 3104 2679847 - 2679823 - T 100 -9.4 -5.77988 | gap 1, opp_overlap 2679823 ACAGATATAAAAAAA CCGATAC-GCA TTGC TGCTGTATCGG TTTTTCTTGTTTACT VF_2392 2680174 - 2679866 - | hypothetical protein zntR 2680683 - 2680264 - | zinc-responsive transcriptional regulator purH 2680963 - 2682555 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 3105 2682599 - 2682641 + F 83 -11.3 -2.66602 | gap 1, opp_overlap 2682617, overlap 2682595 TCGTTAACTGCTTTC GCCCA-CCCCAGTCACATAG CGAG CTATGCTCCTGGGGATGGGC TCAATTGTTGCCTAG purD 2682849 - 2684141 + | phosphoribosylamine--glycine ligase TERM 3106 2684181 - 2684165 - T 100 -9.4 -4.73617 | opp_overlap 2684165 AAAATAAATAATAAA GGCGCT GCAAT AGCGCC TTTTTTCGTTCGACT TERM 3107 2684165 - 2684181 + T 100 -10.1 -5.27477 | opp_overlap 2684165 AAAATAAATAATAAA GGCGCTG CAA TAGCGCC TTTTTTCGTTCGACT VF_2396 2684910 - 2684206 - | hypothetical protein TERM 3108 2684940 - 2684916 - R 100 -15.9 -4.82901 | opp_overlap 2684911 TGCGCTTCATAAAAA TGCCGAGTTAA GGA TTAACTCGGCA AAGTATAGCTTAGTT hupA 2685222 - 2684950 - | HU, DNA-binding transcriptional regulator, alpha subunit TERM 3109 2686205 - 2686156 - g 81 -11.7 -2.81313 | gap 1, overlap 2686151 ATAGTGATAACATCA TTG-GCTTTACGCACCGCTTAGAA CTT TTCTCAGCAATGCGTAAAGGGCAA GGTGAACGACCTCTT VF_2398 2685444 - 2686514 + | CBS domain-containing protein TERM 3110 2686572 - 2686555 - T 100 -9.9 -6.32017 | opp_overlap 2686555 AACAAACAAAAAAAA CCGATGA GCAA TCATCGG TTTTTTTATTAAACT TERM 3111 2686555 - 2686572 + T 100 -9.9 -5.80364 | opp_overlap 2686555 AACAAACAAAAAAAA CCGATGA GCAA TCATCGG TTTTTTTATTAAACT yjaG 2687187 - 2686594 - | hypothetical protein TERM 3112 2687305 - 2687292 - g 79 -3.1 -5.46706 | overlap 2687301 ATTTCAAAAGAAAAA GAGAA ATAC CTCTC ACTTTTAGAGCAAGC TERM 3113 2687899 - 2687883 - g 87 -5.1 -5.49809 | opp_overlap 2687883 2687883 2687884, overlap 2687884 CAAACCTTAAAAAAA TGCAATG GTG CATTGCT ATTTAATGTTGGACG TERM 3114 2687898 - 2687884 - g 77 -8.6 -3.88259 | opp_overlap 2687883 2687883 2687884, overlap 2687883 AAACCTTAAAAAAAT GCAATG GTG CATTGC TATTTAATGTTGGAC TERM 3115 2687884 - 2687898 + G 72 -8.6 -3.55084 | opp_overlap 2687884 2687883, overlap 2687883 2687883 AAACCTTAAAAAAAT GCAATG GTG CATTGC TATTTAATGTTGGAC ghrA 2687259 - 2688173 + | 2-ketoacid reductase VF_2401 2688749 - 2688219 - | protein YhgI TERM 3116 2688758 - 2688739 - G 93 -7.2 -5.4505 | gap 1, opp_overlap 2688739 TGTTCCAATAAAAAA GGAGACCTC ATT GAG-TCTCC TTTTTATCTAGAATC TERM 3117 2688739 - 2688758 + g 85 -7.2 -4.9792 | gap 1, opp_overlap 2688739 TGTTCCAATAAAAAA GGAGACCTC ATT GAG-TCTCC TTTTTATCTAGAATC TERM 3118 2688767 - 2688789 + r 73 -7.2 -3.96892 | opp_overlap 2688772, overlap 2688772 AGTCTCCTTTTTATC TAGAATCTTA ATT TAAGATTTTA TTTATGATACGGCTT TERM 3119 2688772 - 2688784 + r 77 -4.9 -5.02323 | opp_overlap 2688772, overlap 2688767 CCTTTTTATCTAGAA TCTTA ATT TAAGA TTTTATTTATGATAC hemE 2689854 - 2688787 - | uroporphyrinogen decarboxylase TERM 3120 2690064 - 2690085 + r 93 -4.3 -6.09196 | ACAACACCTTACTTA CACCCATTC ATCT GTTTGGGTG TTTTTTTCTTTTAAA nudC 2690854 - 2690096 - | NADH pyrophosphatase rsd 2691014 - 2691496 + | anti-RNA polymerase sigma 70 factor TERM 3121 2691534 - 2691500 - T 100 -19 -2.73364 | opp_overlap 2691500, overlap 2691505 CCTGGAGCTTAATGA TTAAATAGAGTGTTTG ACC CAAACACTCTATTTAA TTTTATAAAATTTGA TERM 3122 2691500 - 2691534 + T 100 -19 -4.44974 | opp_overlap 2691500 2691505 CCTGGAGCTTAATGA TTAAATAGAGTGTTTG ACC CAAACACTCTATTTAA TTTTATAAAATTTGA TERM 3123 2691529 - 2691505 - T 100 -14.5 -3.84514 | opp_overlap 2691500, overlap 2691500 AGCTTAATGATTAAA TAGAGTGTTTG ACC CAAACACTCTA TTTAATTTTATAAAA csgG 2692373 - 2691537 - | curli production assembly/transport outer membrane lipoprotein component CsgG csgF 2692796 - 2692395 - | curli production assembly/transport component CsgF csgE 2693258 - 2692806 - | curli production assembly/transport component CsgE TERM 3124 2693096 - 2693080 - G 85 -2.9 -5.77734 | overlap 2693081 AAAGAAAAATAAAAA TCTCGTC CCA AACGAGT CAATGTACGATCAAT vpsT 2693899 - 2693255 - | DNA-binding transcriptional activator VpsT (CsgD-like) csgB 2694155 - 2694724 + | minor curlin subunit, nucleator CsgB csgA 2694749 - 2695693 + | major curlin subunit CsgA TERM 3125 2695710 - 2695739 + T 100 -13.7 -3.93262 | opp_overlap 2695715, overlap 2695715 TTTATCACTTAAATA AAAAAGCCCTGCA TCTC TGCAGGGCTTTTA TTTGCGTTTATTAAA TERM 3126 2695734 - 2695715 - T 100 -13.6 -5.65927 | opp_overlap 2695710 2695715 CACTTAAATAAAAAA GCCCTGCA TCTC TGCAGGGC TTTTATTTGCGTTTA TERM 3127 2695715 - 2695734 + T 100 -13.6 -4.96468 | opp_overlap 2695715, overlap 2695710 CACTTAAATAAAAAA GCCCTGCA TCTC TGCAGGGC TTTTATTTGCGTTTA VF_2412 2699964 - 2695759 - | DNA-directed RNA polymerase subunit beta' TERM 3128 2695820 - 2695845 + g 74 -4 -5.0925 | gap 1 TCAGTCGCTTGCTCA GCTGATGGACC TTCTT GCTCCA-CAGC TTTTTGCTTTTGACG TERM 3129 2696078 - 2696098 + g 79 -9.7 -3.63895 | CGTGCAGGTTGCTTG CCTTCAGCT TCA AGCTGACGG TTTGCAATCGTTACG TERM 3130 2699990 - 2700006 + r 100 -13.7 -3.7511 | opp_overlap 2699990 TGTAAGGAGAAAAAA GGCGCTC GGC GAGCGCC TTATATTCTACCGGA TERM 3131 2700006 - 2699990 - R 100 -13.7 -5.37345 | opp_overlap 2699990 TGTAAGGAGAAAAAA GGCGCTC GGC GAGCGCC TTATATTCTACCGGA rpoB 2704064 - 2700036 - | RNA polymerase, beta subunit TERM 3132 2701629 - 2701613 - G 71 -7.3 -3.88787 | overlap 2701616 CTACACGTTCAGAAA CAAGGAT TGA ATCCTCG AAGTTATAACCATTC TERM 3133 2704157 - 2704180 + r 82 -5.3 -5.28481 | opp_overlap 2704159 CTGTTTTCTGTAGGA CATGTTCAC TGATTT GTGATCATG TTTTTTGCTTGAGTG TERM 3134 2704269 - 2704244 - R 100 -15.5 -4.64766 | CCTACAGCGCAAAAA GGCCGGTGGTT AATA AACCACCAGCC ATTAGCCGTTAGGCT rplL 2704670 - 2704302 - | 50S ribosomal protein L7/L12 rplJ 2705108 - 2704725 - | 50S ribosomal subunit protein L10 TERM 3135 2705182 - 2705192 + r 79 -5.4 -5.0916 | GCTTCGTTGACTTCA GCAA CAA TTGC TTTTTGTCTTGAAGA TERM 3136 2705313 - 2705295 - R 82 -5.4 -5.28176 | opp_overlap 2705295 2705296, overlap 2705296 TGCAGTCACAAAAAA CCAATTTT TAC AAAATTGA TTTCAAGTTCGGGCA rplA 2706168 - 2705464 - | 50S ribosomal subunit protein L1 rplK 2706601 - 2706173 - | 50S ribosomal protein L11 TERM 3137 2706559 - 2706571 + g 73 -7.7 -3.84712 | overlap 2706566 GGTTCGCCATACCTG CTGCA ACT TGCAG TTTGATATAAGCTTC TERM 3138 2706692 - 2706664 - R 100 -11.2 -5.06414 | gap 1, opp_overlap 2706664 CCCCGTTAACAAAAA GGCGCGAAATTAT AGTA ATAATT-CGCGCC TTTGACAATACCTTT TERM 3139 2706664 - 2706692 + r 90 -11.2 -3.58536 | gap 1, opp_overlap 2706664 CCCCGTTAACAAAAA GGCGCGAAATTAT AGTA ATAATT-CGCGCC TTTGACAATACCTTT TERM 3140 2706710 - 2706725 + r 84 -4 -5.71983 | TGACAATACCTTTTG CTGATT TTTC GATCAG TTTTTTTCTACTTGG nusG 2707267 - 2706722 - | transcription termination factor NusG secE 2707657 - 2707280 - | preprotein translocase subunit SecE VF_2657 2707814 - 2707710 - | hypothetical protein TERM 3141 2707855 - 2707826 - R 86 -12.3 -2.68114 | opp_overlap 2707832, overlap 2707832 ACACAATACAACGCA GAAAAAGGGCATC AAAT GATGCCCTTTTTA CTAGTACTTAGTCAA TERM 3142 2707849 - 2707832 - R 100 -11.3 -4.93318 | opp_overlap 2707832, overlap 2707826 TACAACGCAGAAAAA GGGCATC AAAT GATGCCC TTTTTACTAGTACTT TERM 3143 2707832 - 2707849 + r 100 -11.3 -4.7871 | opp_overlap 2707832 2707826 TACAACGCAGAAAAA GGGCATC AAAT GATGCCC TTTTTACTAGTACTT tufA 2709058 - 2707874 - | elongation factor Tu coaA 2709741 - 2710664 + | pantothenate kinase birA 2711638 - 2710682 - | biotin--protein ligase murB 2712671 - 2711622 - | UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding VF_2427 2712743 - 2713174 + | hypothetical protein TERM 3144 2713174 - 2713164 - f 84 -4 -5.60993 | opp_overlap 2713164, overlap 2713172 TTCTCTATAAAAAAA CTAA CAA TTAG ATATTACTCTCGGCA pssA 2713247 - 2714599 + | phosphatidylserine synthase TERM 3145 2714608 - 2714636 + F 100 -10.4 -4.49756 | opp_overlap 2714608 TCTATAATTAAGTTA TGGGTGTGCATT AATAC AGTGCATACCCA TTTTGATATTTCCCC TERM 3146 2714859 - 2714880 + F 95 -13.1 -3.68569 | opp_overlap 2714859 TACAGATGCAAAAAA GCCCTAATC TTTT GATTAGGGC TTCTTAAATAAGTGA TERM 3147 2714880 - 2714859 - f 100 -13.1 -5.14477 | opp_overlap 2714859 TACAGATGCAAAAAA GCCCTAATC TTTT GATTAGGGC TTCTTAAATAAGTGA TERM 3148 2715060 - 2715039 - f 100 -13.1 -5.14477 | opp_overlap 2715039 TACAGATGCAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTCAAATAAGTGG TERM 3149 2715039 - 2715060 + F 100 -13.1 -4.14739 | opp_overlap 2715039 TACAGATGCAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTCAAATAAGTGG TERM 3150 2717006 - 2717022 + F 85 -9.4 -4.08546 | overlap 2716998 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3151 2717799 - 2717811 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3152 2718327 - 2718346 + F 73 -8.6 -3.23708 | overlap 2718330 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3153 2718936 - 2718956 + F 80 -9.1 -3.63326 | GGGACACTGGATATT TGAAGATGT TGG GCATCTTCA TTGCTTCTTTACATT TERM 3154 2719036 - 2719055 + F 72 -9.2 -2.65808 | opp_overlap 2719027, overlap 2719033 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3155 2720804 - 2720830 + F 90 -11.6 -3.57263 | TTCCGCTTCGTCGTT TCAGGCTGCGTA TAA TACGCTGTCTGA TTTGAAAGTCAAGAT TERM 3156 2720958 - 2720929 - f 100 -13.7 -3.64822 | opp_overlap 2720934, overlap 2720934 AGTCTGGGAGCGAAA TAAAAGCCCGTTC AACT GAACGGGCTCTCA TTCAAATTCAAGCCT TERM 3157 2720953 - 2720934 - f 100 -13.6 -4.90778 | opp_overlap 2720934, overlap 2720929 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3158 2720934 - 2720953 + F 89 -13.6 -2.92246 | opp_overlap 2720934 2720929 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3159 2722791 - 2722807 + F 85 -9.4 -4.08546 | overlap 2722783 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3160 2723584 - 2723596 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3161 2724112 - 2724131 + F 73 -8.6 -3.23708 | overlap 2724115 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3162 2724338 - 2724300 - f 82 -9.8 -3.53091 | opp_overlap 2724314, overlap 2724337 ATGTTTCTTTCGAAA CCATTTTTAAAGACTCTC AAG GAGAATATTTAAAGATGG TGGAGCTATGCGGGA TERM 3163 2724530 - 2724542 + F 77 -4.9 -5.06451 | opp_overlap 2724528 2724530 GCTACAGACCCAACA TTAAG TCT CTTAA TTTTTTAACCTAATC TERM 3164 2724610 - 2724629 + F 72 -9.2 -2.65808 | opp_overlap 2724601, overlap 2724607 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3165 2726380 - 2726406 + F 90 -11.6 -3.57263 | TTCCGCTTCGTCGTT TCAGGCTGCGTA TAA TACGCTGTCTGA TTTGAAAGTCAAGAT TERM 3166 2726534 - 2726505 - f 100 -13.7 -3.64822 | opp_overlap 2726510, overlap 2726510 AGTCTGGGAGCGAAA TAAAAGCCCGTTC AACT GAACGGGCTCTCA TTCAAATTCAAGCCT TERM 3167 2726510 - 2726529 + F 89 -13.6 -2.92246 | opp_overlap 2726505 2726510 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3168 2726529 - 2726510 - f 100 -13.6 -4.90778 | opp_overlap 2726510, overlap 2726505 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3169 2728371 - 2728387 + F 85 -9.4 -4.08546 | overlap 2728363 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3170 2729164 - 2729176 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3171 2729692 - 2729711 + F 73 -8.6 -3.23708 | overlap 2729695 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3172 2730091 - 2730110 + F 72 -9.2 -2.65808 | opp_overlap 2730082, overlap 2730088 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT VF_2432 2732165 - 2732515 + | RNA-binding protein murI 2733397 - 2732609 - | glutamate racemase TERM 3173 2732640 - 2732656 + g 70 -8.1 -3.75193 | opp_overlap 2732638 2732631 2732640, overlap 2732643 CCCAAACACTGAAGA GAACTAA AAT TTAGTTC TTTGAATGTATGATT TERM 3174 2732896 - 2732908 + g 74 -6.3 -4.43879 | opp_overlap 2732900 CTTTATTTTGCCAAG GAGAT AAA ATCTC TTTTAGTTCCGTAAT VF_2434 2734134 - 2733463 - | hypothetical protein TERM 3175 2734170 - 2734155 - R 88 -7.5 -5.0925 | opp_overlap 2734155 CCTCAAAATGAAAAA CCGCC AATGAA GGCGG TCTTAAATCAAATTA btuB 2736030 - 2734183 - | vitamin B12/cobalamin outer membrane transporter TERM 3176 2736009 - 2736020 + g 70 -3.6 -4.84642 | opp_overlap 2735994 2735991 GCGACACTACAGCTG TCGC TAAG GCGG TTTTCTTCATTTCCG TERM 3177 2736513 - 2736497 - g 72 -4.4 -4.81551 | opp_overlap 2736497 CAGTTAGATGAAAAA GCAGAA GCACT CTCTGC TATGTTTTCTGAATT trmA 2736443 - 2737549 + | tRNA (uracil-5-)-methyltransferase TERM 3178 2737586 - 2737562 - T 100 -10 -5.89947 | opp_overlap 2737562 TAAACTTAAAAAAAA GGCTCAGAGC GTAAT GTTCTGAGCC TTTTTTATGAACGGT TERM 3179 2737562 - 2737586 + T 100 -12.9 -5.24531 | opp_overlap 2737562 TAAACTTAAAAAAAA GGCTCAGAGCG TAA TGTTCTGAGCC TTTTTTATGAACGGT yijD 2737979 - 2737605 - | hypothetical protein TERM 3180 2737970 - 2737980 + g 75 -5.4 -4.68593 | CATTTCTACTATTTT CATG TGT CATG TTTTTACCTCATACA VF_2438 2738707 - 2738030 - | DNA-binding transcriptional repressor FabR TERM 3181 2739347 - 2739327 - g 74 -6.1 -4.45201 | TCGTAGAAAAAAATA CCGTTGCTG TTA CAGCAAAAG ATGGCTCTATTGAAA sthA 2738879 - 2740357 + | soluble pyridine nucleotide transhydrogenase TERM 3182 2740386 - 2740368 - T 95 -8.8 -5.37345 | opp_overlap 2740368 2740369, overlap 2740369 TCTAATTATAAAAAA GGGCTGCA TGC TGCAGCCA TTTTTTTGTATAACT TERM 3183 2740368 - 2740386 + T 95 -8.8 -5.72616 | opp_overlap 2740368 2740369, overlap 2740369 TCTAATTATAAAAAA GGGCTGCA TGC TGCAGCCA TTTTTTTGTATAACT TERM 3184 2740369 - 2740385 + T 100 -12.3 -4.01943 | opp_overlap 2740369 2740368, overlap 2740368 CTAATTATAAAAAAG GGCTGCA TGC TGCAGCC ATTTTTTTGTATAAC TERM 3185 2740385 - 2740369 - T 95 -12.3 -3.81322 | opp_overlap 2740368 2740369, overlap 2740368 CTAATTATAAAAAAG GGCTGCA TGC TGCAGCC ATTTTTTTGTATAAC dinF 2741756 - 2740425 - | DNA-damage-inducible SOS response protein VF_2441 2742676 - 2741882 - | hypothetical protein lexA 2743428 - 2742802 - | LexA repressor TERM 3186 2742932 - 2742942 + g 73 -6.8 -4.19953 | opp_overlap 2742923 2742921 ACCATAGAGCCTTTA CGCT CTA AGCG TTTTACCGTTACATC plsB 2743670 - 2746093 + | glycerol-3-phosphate acyltransferase TERM 3187 2746160 - 2746115 - T 100 -14.4 -3.53012 | opp_overlap 2746120 2746125, overlap 2746125 GTCCCTTTCTTTAAA TACAAAAAAAGCCAGTATGA TATTAG TCATACTGGCTTTTCTTTTA AAACAACACGTTAAA TERM 3188 2746120 - 2746155 + T 100 -12.8 -4.07568 | opp_overlap 2746115 2746125, overlap 2746125 TTTCTTTAAATACAA AAAAAGCCAGTATGAT ATTA GTCATACTGGCTTTTC TTTTAAAACAACACG TERM 3189 2746125 - 2746150 + T 100 -12.7 -5.07652 | opp_overlap 2746115 2746125, overlap 2746120 TTAAATACAAAAAAA GCCAGTATGAT ATTA GTCATACTGGC TTTTCTTTTAAAACA TERM 3190 2746150 - 2746125 - T 100 -12 -5.88197 | opp_overlap 2746125 2746120, overlap 2746115 TTAAATACAAAAAAA GCCAGTATGA TATTAG TCATACTGGC TTTTCTTTTAAAACA ubiA 2747028 - 2746171 - | 4-hydroxybenzoate octaprenyltransferase TERM 3191 2746538 - 2746552 + g 79 -8.6 -4.02108 | opp_overlap 2746531 2746525 AACAGTAACCACGCT TCAGGT GGT ACCTGA TTTGATTCTGCTGCG TERM 3192 2746951 - 2746937 - G 79 -5.6 -4.85782 | GCTGCTAAAAATAAA GCCCAC AAT GTTGGC CATAAAAGTAATAGA ubiC 2747567 - 2747025 - | chorismate--pyruvate lyase fliL2 2747689 - 2748099 + | flagellar basal body-associated protein FliL-like protein TERM 3193 2748176 - 2748140 - T 100 -18.3 -3.06492 | opp_overlap 2748145, overlap 2748145 TTATCTACGTCAATA TAAAATGAGCGAGGTAA TCA TTACCTCGCTCATTTTT TTTAACTCAATGAAG TERM 3194 2748171 - 2748145 - T 100 -18.2 -4.67608 | opp_overlap 2748145, overlap 2748140 TACGTCAATATAAAA TGAGCGAGGTAA TCA TTACCTCGCTCA TTTTTTTTAACTCAA TERM 3195 2748145 - 2748171 + T 100 -18.2 -5.81412 | opp_overlap 2748145 2748140 TACGTCAATATAAAA TGAGCGAGGTAA TCA TTACCTCGCTCA TTTTTTTTAACTCAA glpG 2749020 - 2748178 - | intramembrane serine protease TERM 3196 2748327 - 2748317 - G 73 -5.4 -4.64157 | opp_overlap 2748317 CAAACAAGCATAAAA CCAA CTA TTGG TTTAGATACGGAAAT glpE 2749350 - 2749027 - | thiosulfate sulfurtransferase TERM 3197 2749784 - 2749807 + r 100 -11.1 -5.11937 | opp_overlap 2749784 TCAGGTATAAAAAAA GGCTGAACT CTTTCA AGTTCAGCC TTTTTTAAAATTCTT TERM 3198 2749807 - 2749784 - R 100 -11.8 -5.64274 | opp_overlap 2749784 TCAGGTATAAAAAAA GGCTGAACTC TTTC AAGTTCAGCC TTTTTTAAAATTCTT rpoH 2750690 - 2749830 - | RNA polymerase, sigma-32 (sigma-H) factor TERM 3199 2750871 - 2750847 - R 100 -13 -6.01725 | opp_overlap 2750842 AACAAAAACAAAAAA GCCGCTAATT CAATC AATTAGCGGC TTAAGATCTTATTTA ftsX 2751859 - 2750906 - | ABC transporter membrane protein ftsE 2752520 - 2751852 - | ABC transporter ATP-binding protein TERM 3200 2752161 - 2752175 + g 79 -11.4 -2.61796 | opp_overlap 2752158, overlap 2752160 AGTTTTATCTAATGC CGCCGA GAC TCGGCG CTTAATATCATTTTC ftsY 2753762 - 2752524 - | fused Signal recognition particle (SRP) receptor: membrane binding protein/ protein rsmD 2753833 - 2754435 + | methyltransferase VF_2455 2754436 - 2754702 + | hypothetical protein TERM 3201 2754733 - 2754747 + F 93 -7.1 -5.67063 | opp_overlap 2754733 TAGATTATTTTAAAA GGAGC GCTCA GCTCC TTTTTTTATACTACA TERM 3202 2754747 - 2754733 - f 75 -7.1 -4.16279 | opp_overlap 2754733 TAGATTATTTTAAAA GGAGC GCTCA GCTCC TTTTTTTATACTACA TERM 3203 2755067 - 2755051 - g 70 -2.9 -5.055 | TTAAGCCTTAAAAAA GAAGCCG TAT CGATTTC AGGTGCCATTATCTT VF_2456 2754847 - 2755440 + | multiple antibiotic resistance protein MarC TERM 3204 2755461 - 2755489 + T 100 -14.8 -3.88787 | opp_overlap 2755461 2755467, overlap 2755467 ACCATCACTTTCAAA TAAAAAGGTCGC TATAT GCGACCTTTTTA TTTATACCAATATAA TERM 3205 2755489 - 2755461 - T 100 -14.8 -3.58522 | opp_overlap 2755461 2755467, overlap 2755467 ACCATCACTTTCAAA TAAAAAGGTCGC TATAT GCGACCTTTTTA TTTATACCAATATAA TERM 3206 2755467 - 2755483 + T 100 -9.4 -5.38054 | opp_overlap 2755461 2755467, overlap 2755461 ACTTTCAAATAAAAA GGTCGC TATAT GCGACC TTTTTATTTATACCA TERM 3207 2755483 - 2755467 - T 100 -9.4 -5.27938 | opp_overlap 2755467 2755461, overlap 2755461 ACTTTCAAATAAAAA GGTCGC TATAT GCGACC TTTTTATTTATACCA VF_2457 2755747 - 2755505 - | hypothetical protein TERM 3208 2755826 - 2755790 - H 78 -10.4 -2.66316 | opp_overlap 2755800 2755800, overlap 2755787 2755800 CGTTTTAGCATACCA GATAAAAACAGTAAGC TTTAC GCTTTCTATTTTTATC GACAAATAGCTCATA VF_2658 2756418 - 2756498 + | hypothetical protein TERM 3209 2756529 - 2756546 + T 100 -12.7 -5.71983 | opp_overlap 2756529 GTTCATATAAAAAAA CGGACGC AAAT GCGTCCG TTTTTTTATGCTTAA TERM 3210 2756546 - 2756529 - T 100 -12.7 -5.71712 | opp_overlap 2756529 GTTCATATAAAAAAA CGGACGC AAAT GCGTCCG TTTTTTTATGCTTAA VF_2458 2756937 - 2756572 - | hypothetical protein VF_2459 2757236 - 2757568 + | hypothetical protein TERM 3211 2758852 - 2758840 - g 79 -3.4 -5.51165 | AAAAGGCCAAAAAAA TGGA GCCTA TCCA CATCAATTAATCATG recG 2757590 - 2759671 + | ATP-dependent DNA helicase TERM 3212 2759737 - 2759693 - T 90 -11.8 -3.51934 | gap 1, opp_overlap 2759702 2759707, overlap 2759707 TCCTCCTCATAAATA GCAGATACAAAAAAGGTGAGT AACT ACTCACCTTTTCTTTAT-TGC GATTAAACTAGCAAT TERM 3213 2759702 - 2759729 + T 93 -10 -4.20918 | opp_overlap 2759693 2759707, overlap 2759707 TAAATAGCAGATACA AAAAAGGTGAGT AACT ACTCACCTTTTC TTTATTGCGATTAAA TERM 3214 2759724 - 2759707 - T 100 -9.9 -5.43414 | opp_overlap 2759702 2759707, overlap 2759693 AGCAGATACAAAAAA GGTGAGT AACT ACTCACC TTTTCTTTATTGCGA TERM 3215 2759707 - 2759724 + T 100 -9.9 -5.09762 | opp_overlap 2759707 2759693, overlap 2759702 AGCAGATACAAAAAA GGTGAGT AACT ACTCACC TTTTCTTTATTGCGA gntY 2760336 - 2759752 - | putative DNA uptake protein TERM 3216 2760267 - 2760288 + g 71 -6.6 -4.10161 | CACGGATGTTTGTCC CTTCTGGC TGCTGT GCTAGAAG TTTTGCAAAATGCTC cysQ 2761273 - 2760455 - | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase TERM 3217 2760981 - 2760963 - G 71 -6 -4.28762 | ATAATCGTAGCAAAA TCACCACT GCG AGCGATGA ACTCTTGCGTACCAT nudE 2761830 - 2761279 - | ADP-ribose diphosphatase gspN 2762602 - 2761841 - | general secretion pathway protein N gspM 2763090 - 2762599 - | cholera toxin secretion protein EpsM gspL 2764343 - 2763090 - | general secretion pathway protein L TERM 3218 2764216 - 2764262 + gr 72 -4.4 -4.77173 | opp_overlap 2764219 2764220 2764224, overlap 2764220 CTGTATGACGACAAC GAAGGTAATGCTTCAGATGAAT CTA ATTCACCCGAAGCGATCACTTC TTTATTTTCTGGAGA TERM 3219 2764259 - 2764220 - GR 81 -11 -2.6834 | gap 1, opp_overlap 2764220 2764216, overlap 2764219 2764224 ATGACGACAACGAAG GTAAT-GCTTCAGATGAAT CTA ATTCACCCGAAGCGATCAC TTCTTTATTTTCTGG TERM 3220 2764254 - 2764224 - GR 79 -9.8 -3.25356 | opp_overlap 2764220 2764216, overlap 2764220 2764219 CGACAACGAAGGTAA TGCTTCAGATGAAT CTA ATTCACCCGAAGCG ATCACTTCTTTATTT gspK 2765346 - 2764312 - | general secretion pathway protein K TERM 3221 2764975 - 2764937 - GR 71 -6 -4.18488 | ACTGACTCTAATAAA TTCATCCATACTCCCACT AAA AAAGGGCGTTTAGATGAA TCATTACTGGCTTCA gspJ 2766026 - 2765346 - | general secretion pathway protein J TERM 3222 2765474 - 2765498 + g 76 -2.2 -5.4477 | gap 1 TCATTTTAATGGCAT TGGGTAATTGA TTTT TCATTT-CCCA TTTTTTTAGCCATTT gspI 2766390 - 2766013 - | general secretion pathway protein I gspH 2766976 - 2766380 - | general secretion pathway protein H TERM 3223 2766610 - 2766600 - G 79 -6.8 -4.49556 | overlap 2766584 2766583 TCTTCATCAAATAAA GAGC CCG GCTC AAAGAGTCGCTCATC gspG 2767451 - 2766999 - | general secretion pathway protein G TERM 3224 2767521 - 2767495 - R 81 -5.9 -4.89519 | overlap 2767499 ATAAGATAAAAGAAA GGTAGATAGCA GCGAA TGCTATCCAAC CAAATTATTTAATTC gspF 2768727 - 2767513 - | general secretion pathway protein F gspE 2770227 - 2768728 - | general secretion pathway protein E gspD 2772248 - 2770227 - | general secretion pathway protein D TERM 3225 2770854 - 2770842 - G 70 -5.5 -4.33417 | opp_overlap 2770842 TTCACCCACAATAAA TGACG CTT CGCCA TTATCCATCACCGTA gspC 2773201 - 2772293 - | general secretion pathway protein C hslR 2773481 - 2773882 + | ribosome-associated heat shock protein Hsp15 hslO 2773975 - 2774850 + | Hsp33-like chaperonin TERM 3226 2774905 - 2774888 - f 78 -6.9 -4.41844 | opp_overlap 2774888 AAAACTGTTACAAAA GCCAGCC ATTA GGTTGGC TTTTTTTATAACTAA TERM 3227 2774888 - 2774905 + F 100 -9.1 -5.64274 | opp_overlap 2774888 AAAACTGTTACAAAA GCCAGCC ATTA GGTTGGC TTTTTTTATAACTAA TERM 3228 2776816 - 2776780 - g 70 -5.8 -4.47217 | AACGAGGAAGGAAAA GCGTTAGTTAAAGCGG GTCCT CAGCTATAACCTACGC CTGATTACTCATAAA pck 2775187 - 2776809 + | phosphoenolpyruvate carboxykinase TERM 3229 2776866 - 2776834 - f 83 -6.3 -4.88736 | opp_overlap 2776838, overlap 2776838 GATTACTCATAAAAA CCAAGCCCTTCTC TCCTTAT GAGAAGGGCTTTT TTATACCCTTAGCTC TERM 3230 2776838 - 2776862 + F 100 -11.5 -5.27923 | opp_overlap 2776834 2776838 ACTCATAAAAACCAA GCCCTTCTC TCCTTAT GAGAAGGGC TTTTTTATACCCTTA TERM 3231 2776862 - 2776838 - f 90 -11.5 -3.88603 | opp_overlap 2776838, overlap 2776834 ACTCATAAAAACCAA GCCCTTCTC TCCTTAT GAGAAGGGC TTTTTTATACCCTTA TERM 3232 2777655 - 2777630 - g 100 -9.9 -5.18643 | opp_overlap 2777634 TGAATTAAAAGAAAA TAAATTATGGG TTAT CCCACAATTTA CGCTACGTCGATTTA yicH 2776992 - 2778950 + | hypothetical protein TERM 3233 2778961 - 2778985 + T 100 -17.3 -5.27938 | opp_overlap 2778961 AGTAAATCAAAAAAA CGCCCCATAAA TCA TTTATGGGGCG TTTTTATTTAAACAT TERM 3234 2778985 - 2778961 - T 100 -17.3 -5.73563 | opp_overlap 2778961 AGTAAATCAAAAAAA CGCCCCATAAA TCA TTTATGGGGCG TTTTTATTTAAACAT VF_2480 2780230 - 2779013 - | GGDEF domain-containing protein TERM 3235 2780398 - 2780370 - H 91 -2.4 -6.19302 | overlap 2780371 ACACAATAAAAAAAA TGCTCTTGCTTA AGAAG TATGCAAGAACT TACCAAAATATGATA TERM 3236 2780397 - 2780371 - H 72 -5.9 -4.27921 | overlap 2780370 CACAATAAAAAAAAT GCTCTTGCTTA AGAAG TATGCAAGAAC TTACCAAAATATGAT pldB 2780479 - 2781447 + | lysophospholipase L(2) yigL 2781615 - 2782412 + | hydrolase TERM 3237 2782403 - 2782414 + T 70 -4.4 -4.77986 | opp_overlap 2782397 2782413, overlap 2782397 2782412 2782413 CCTAGAAAACTTATT GCTT AAAT AAGC TTTTTCACTATTTGG TERM 3238 2782412 - 2782457 + T 89 -10.7 -3.55181 | gap 1, opp_overlap 2782397 2782413, overlap 2782397 2782403 2782413 CTTATTGCTTAAATA AGCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTG-AAAGCA TTGTAATTACATTTA TERM 3239 2782413 - 2782456 + T 93 -14.2 -2.72385 | gap 1, opp_overlap 2782413, overlap 2782403 2782412 TTATTGCTTAAATAA GCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTG-AAAGC ATTGTAATTACATTT TERM 3240 2782456 - 2782413 - T 95 -12 -3.91716 | gap 1, opp_overlap 2782403 2782413 2782412 TTATTGCTTAAATAA GCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTG-AAAGC ATTGTAATTACATTT TERM 3241 2782492 - 2782509 + T 82 -5.5 -5.33405 | opp_overlap 2782493, overlap 2782493 CAATAAATTAAAAAA ACCAGAG AATT CTCTGGC TTTTTATTTGATCCG TERM 3242 2782493 - 2782508 + T 79 -9 -3.78958 | opp_overlap 2782493, overlap 2782492 AATAAATTAAAAAAA CCAGAG AATT CTCTGG CTTTTTATTTGATCC TERM 3243 2782508 - 2782493 - T 100 -9 -5.77856 | opp_overlap 2782493 2782492 AATAAATTAAAAAAA CCAGAG AATT CTCTGG CTTTTTATTTGATCC xerC 2783444 - 2782533 - | site-specific tyrosine recombinase XerC VF_2659 2784141 - 2783437 - | hypothetical protein dapF 2784968 - 2784138 - | diaminopimelate epimerase TERM 3244 2785011 - 2785036 + r 89 -11.3 -3.34414 | gap 1, opp_overlap 2785011 TCTTGGCTGAAAAAA GAGCAAGCATGC TTA GCAT-CTTGCTC TTAATAATATTTTTA TERM 3245 2785036 - 2785011 - R 100 -11.3 -5.00616 | gap 1, opp_overlap 2785011 TCTTGGCTGAAAAAA GAGCAAGCATGC TTA GCAT-CTTGCTC TTAATAATATTTTTA lysA 2786302 - 2785049 - | diaminopimelate decarboxylase, PLP-binding TERM 3246 2785123 - 2785111 - G 70 -7.7 -3.72324 | CACGCTTACGAACAA GGTGA ACG TCACC ACCATCCACCATAAT TERM 3247 2786013 - 2786002 - G 80 -4.4 -5.34555 | CTACACCAGAAAAAA CAAC CTTA GTTG GATCGCCACCTGCGG yifL 2786484 - 2786365 - | putative lipoprotein cyaY 2786566 - 2786880 + | frataxin-like protein TERM 3248 2786942 - 2786966 + T 72 -9.4 -2.62184 | opp_overlap 2786947, overlap 2786940 2786915 2786947 GCTTCGCCCTTGAGA GTAAAGCTCT TCTCC AGAGCTTTGC TCGTCTCAAGGCGAA prlC 2789057 - 2787015 - | oligopeptidase A TERM 3249 2788660 - 2788672 + g 82 -4.1 -5.4756 | overlap 2788661 TCAAAATCACGCAGT TCATC AAT GATGG TTTTTTGTTGAGCTT yhiR 2789210 - 2790049 + | DNA (exogenous) processing protein gor 2790267 - 2791622 + | glutathione reductase TERM 3250 2791658 - 2791676 + F 100 -8.9 -5.93252 | opp_overlap 2791658 2791669 TCTAACGATAAAAAA CGGGATA ATAAC TATCCCG TTTTTTATTTTTACG TERM 3251 2791676 - 2791658 - f 100 -9.6 -5.37345 | opp_overlap 2791658, overlap 2791669 TCTAACGATAAAAAA CGGGATAA TAA CTATCCCG TTTTTTATTTTTACG VF_2490 2791786 - 2792256 + | hypothetical protein TERM 3252 2792346 - 2792372 + F 84 -5.8 -5.27335 | opp_overlap 2792346, overlap 2792340 TGAGCCGCATACAAA GCAAGGACGG AACAACG CCGACTTTGC TTTTTATTTAAAACC VF_2491 2792427 - 2793734 + | hypothetical protein TERM 3253 2793764 - 2793785 + T 86 -5.7 -5.64274 | opp_overlap 2793782 AACTTTTTGTTTTAG CCCCAAACC GTAA GGTAAGGGG TTTTTTTATAGATAA TERM 3254 2793809 - 2793782 - T 73 -8.6 -3.1996 | opp_overlap 2793764 2793806, overlap 2793806 CAAACCGTAAGGTAA GGGGTTTTTTTA TAGA TAAAAAAACGCC GCCAATTAACCTTGG TERM 3255 2793829 - 2793806 - T 100 -13.9 -5.76633 | opp_overlap 2793806, overlap 2793782 TTATAGATAAAAAAA CGCCGCCAA TTAACC TTGGCGGCG TTTTTGTTTTATTGA TERM 3256 2793806 - 2793829 + T 100 -13.9 -5.62288 | opp_overlap 2793782 2793806 TTATAGATAAAAAAA CGCCGCCAA TTAACC TTGGCGGCG TTTTTGTTTTATTGA VF_2492 2794606 - 2793878 - | copper sensitivity protein ScsC VF_2493 2795116 - 2794631 - | thiol:disulfide interchange protein TlpA VF_2494 2797230 - 2795134 - | thiol:disulfide interchange protein DsbD TERM 3257 2797260 - 2797282 + r 80 -9.3 -3.60395 | opp_overlap 2797259 2797258 AAAAATAAATATACG TCGAATGTT GTTAA AACATTCGA TTACTTATTCTCTAA VF_2661 2797670 - 2797287 - | hypothetical protein VF_2495 2798345 - 2797755 - | hypothetical protein TERM 3258 2797824 - 2797837 + g 76 -2.4 -5.46657 | AACCACGCTTTGTAA TGGA TGGAAT TCCA TTTTTTCTTGCAGTG TERM 3259 2798693 - 2798683 - g 70 -3.2 -4.93316 | GAACAACAGCAAAAA GTGC TCG ACAC ACTTAAAGAAAATCA VF_2496 2798611 - 2799936 + | serine/threonine protein kinase TERM 3260 2801010 - 2800996 - g 85 -2.8 -5.74288 | overlap 2800998 ATAAAGAAGAAAAAA TCCCTT TTG AAGGCA TATGGCAACAAACGC TERM 3261 2801110 - 2801098 - g 84 -7.7 -4.7078 | TTAAGCACCCAAAAA CAGGT AAA ACCTG CTCAAAAAATGAAGA VF_2497 2799966 - 2801393 + | hypothetical protein rpoE5 2801405 - 2801971 + | RNA polymerase ECF-type sigma factor TERM 3262 2802360 - 2802350 - g 70 -3.2 -4.8622 | GTTGGCAACCAAAAA CCCA AAG TGGA TAACGACATACAGCA TERM 3263 2803063 - 2803039 - g 80 -4.4 -5.30189 | CACAATATTAAAAAA TAAACGAG CAATGGAAT CTCGTTTA AATGTCGTTACTGGG VF_2499 2801978 - 2803546 + | hypothetical protein TERM 3264 2803566 - 2803597 + T 77 -8.9 -3.64599 | opp_overlap 2803573, overlap 2803573 ATCATAGAGATAAAT AAAAAAAGAGCGA AGTGTG TCGCTCTTTTTTG TTTGGCCTATGATAG TERM 3265 2803590 - 2803573 - T 100 -7 -6.04953 | opp_overlap 2803566 2803573 AGATAAATAAAAAAA GAGCGA AGTGTG TCGCTC TTTTTTGTTTGGCCT TERM 3266 2803573 - 2803590 + T 93 -7 -5.64421 | opp_overlap 2803573, overlap 2803566 AGATAAATAAAAAAA GAGCGA AGTGTG TCGCTC TTTTTTGTTTGGCCT VF_2500 2804477 - 2803614 - | hypothetical protein TERM 3267 2804571 - 2804558 - H 80 -2.5 -5.64274 | CTATTGATAAAAAAA TAAAA TAAA TTTTA CGGTTTTTTTCCTAT TERM 3268 2805486 - 2805452 - g 80 -10.1 -3.67864 | CAACCTAACTTCAAA CCAACGATTCCTGTA GACAA TACAGGAACAGTCGG TGAAGTGATTATTAA TERM 3269 2805767 - 2805748 - g 70 -2.9 -5.15634 | opp_overlap 2805748 TATTTCAGCAAAAAA TATCACA ACTGTA CGTGATA CTTATATTGTGACAT VF_2501 2804705 - 2807476 + | putative lipoprotein TERM 3270 2807498 - 2807515 + F 100 -10.5 -4.85653 | opp_overlap 2807498 TTAACTAACAAAAAA CCCCGGT ACTC GCCGGGG TTTATTTTATCTCTC TERM 3271 2807515 - 2807498 - f 100 -9.8 -5.5604 | opp_overlap 2807498 TTAACTAACAAAAAA CCCCGG TACTCG CCGGGG TTTATTTTATCTCTC VF_2502 2807797 - 2808144 + | transcriptional regulator VF_2503 2808146 - 2808508 + | transcriptional regulator VF_2504 2808515 - 2808811 + | putative cytoplasmic protein VF_2505 2808868 - 2809644 + | permease VF_2506 2809663 - 2810313 + | hypothetical protein TERM 3272 2810327 - 2810348 + F 71 -8.8 -3.05463 | opp_overlap 2810318 AACCCATCTTGGTAA TGCTCTTC AACCAA GAAGAGCA TTACATAACACAGGT TERM 3273 2811435 - 2811460 + G 70 -8.3 -3.28712 | overlap 2811436 CGAATCATTTTTACC TTTGGCAAGCA TTGT TGCTGGCCAAG TTATCACGACACAAC TERM 3274 2811436 - 2811459 + G 70 -9.6 -2.57132 | overlap 2811435 GAATCATTTTTACCT TTGGCAAGCA TTGT TGCTGGCCAA GTTATCACGACACAA VF_2507 2810371 - 2811507 + | dihydroorotase VF_2508 2811491 - 2812594 + | L-seryl-tRNA selenium transferase family protein VF_2509 2812607 - 2813347 + | 2-dehydro-3-deoxyphosphogluconate aldolase TERM 3275 2813361 - 2813389 + F 95 -9 -5.4505 | gap 1, opp_overlap 2813361 AAGTTTGCTCCCAAA GGCCAATTATTCG CCCC CGGAT-ATTGGCC TTTTTTATTAAAAAC VF_2510 2813546 - 2815468 + | PTS system, mannitol (cryptic)-specific IIA component TERM 3276 2815477 - 2815494 + T 93 -9.8 -4.23758 | opp_overlap 2815477 TTGGTAAATAAAAAA CCCCGG AACATG CCGGGG TTTTACATATCAACT TERM 3277 2815494 - 2815477 - T 100 -9.8 -5.63517 | opp_overlap 2815477 TTGGTAAATAAAAAA CCCCGG AACATG CCGGGG TTTTACATATCAACT VF_2511 2815799 - 2815527 - | hypothetical protein VF_2512 2816670 - 2815774 - | hypothetical protein TERM 3278 2818305 - 2818276 - g 70 -3.6 -4.96028 | gap 1, opp_overlap 2818295, overlap 2818304 CGCGAAAAAAAATAA CCGCTTCTTAGCT TGTTT AGC-ACGAAACGG CTTACGTCGAACGCC VF_2513 2816846 - 2818726 + | cyclic nucleotide binding protein/CBS domain-containing proteins TERM 3279 2818954 - 2818967 + G 79 -5.3 -5.05782 | TGGTTTAGTGCCTTT TACGT TAGA ACGTA TTTTTTGCCGTCAAT VF_2514 2818736 - 2819452 + | DNA polymerase III subunit epsilon TERM 3280 2819486 - 2819511 + T 100 -11.2 -4.53303 | opp_overlap 2819486 ATGAAATATAAAAAA GCCGATGAAG ATAAAA CTTCGTCGGC TTTTATGTGCACGTA TERM 3281 2819511 - 2819486 - T 95 -9 -5.5762 | opp_overlap 2819486 ATGAAATATAAAAAA GCCGATGAAG ATAAAA CTTCGTCGGC TTTTATGTGCACGTA betT 2821122 - 2819542 - | choline transporter of high affinity TERM 3282 2821282 - 2821298 + r 70 -8.1 -3.17146 | opp_overlap 2821297, overlap 2821280 AAGGAAAATTATCCA TATTGTG AAA CACAATA TCTGTTCTACAAACA TERM 3283 2821319 - 2821337 + r 93 -7.4 -5.4833 | opp_overlap 2821320, overlap 2821320 TCTACAAACAAAAAA ACGGTGAA TAA TTCACCGC TTTTTTATTAGCTAA TERM 3284 2821320 - 2821336 + r 90 -10.9 -3.87914 | opp_overlap 2821320, overlap 2821319 CTACAAACAAAAAAA CGGTGAA TAA TTCACCG CTTTTTTATTAGCTA TERM 3285 2821336 - 2821320 - R 100 -10.9 -6.02919 | opp_overlap 2821320 2821319 CTACAAACAAAAAAA CGGTGAA TAA TTCACCG CTTTTTTATTAGCTA dppC 2822302 - 2821361 - | dipeptide transport system permease protein DppC dppB 2823282 - 2822305 - | dipeptide transport system permease protein DppB TERM 3286 2822473 - 2822461 - G 83 -3.3 -5.61881 | overlap 2822462 TTCTAAAAATAAAAA TCCAG TGC CTGGC CATTGAAACACTGTT TERM 3287 2823377 - 2823423 + r 74 -3.5 -5.27335 | gap 3, opp_overlap 2823386, overlap 2823386 TTAAGAAATGAATGA CATAAAT--AA-GGTTGCTCTA ACACCA TAGAGCAACCTTTTCATTTATG TTTTTATTTAACCAC TERM 3288 2823386 - 2823411 + r 100 -12 -4.68919 | opp_overlap 2823386, overlap 2823377 GAATGACATAAATAA GGTTGCTCTA ACACCA TAGAGCAACC TTTTCATTTATGTTT TERM 3289 2823411 - 2823386 - R 100 -12 -4.18421 | opp_overlap 2823386 2823377 GAATGACATAAATAA GGTTGCTCTA ACACCA TAGAGCAACC TTTTCATTTATGTTT dppA 2824980 - 2823427 - | dipeptide-binding protein DppA TERM 3290 2824273 - 2824288 + g 70 -3.2 -4.99947 | GCCAGAAAGAAGAGC TGCAAC ACGA GTCGCA TTTTCTTTGATTGGA dppD 2826795 - 2825059 - | dipeptide transport ATP-binding protein DppD TERM 3291 2825522 - 2825540 + g 71 -6 -4.28548 | TGAAAACGAATCGGC TCTGCGAT AAT ATCGAAGA TTTTCATGCGTGGAT TERM 3292 2827320 - 2827299 - H 100 -14.5 -5.42514 | opp_overlap 2827299 TCAGAAATGAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAATGTGGTCGG TERM 3293 2827299 - 2827320 + H 100 -14.5 -3.727 | opp_overlap 2827299 TCAGAAATGAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAATGTGGTCGG TERM 3294 2828179 - 2828166 - H 73 -4.5 -4.95302 | GTAAATACAATAAAA TCGGC TGAA GCCAA TAATAATAACTGGGA VF_2520 2828211 - 2828618 + | cytochrome c5 TERM 3295 2828666 - 2828643 - T 100 -11.8 -5.38958 | ACTTATAAATAAAAA TGCCCATAGA ATTT TCTACGGGCA TTAACGTTATCTATA rep 2830701 - 2828686 - | DNA helicase and single-stranded DNA-dependent ATPase TERM 3296 2828714 - 2828724 + g 70 -5.4 -4.39568 | ATGGCTCTGAGGTTG GCAA TAT TTGC TTTTCCTCTCTCCAT TERM 3297 2830870 - 2830853 - H 75 -7.1 -4.17316 | opp_overlap 2830853 AGTCCCCTAAAATAA TGAATGA ACGT TCATTCA TTTCATAAGGACGTA TERM 3298 2830853 - 2830870 + H 70 -7.1 -3.72893 | opp_overlap 2830853 AGTCCCCTAAAATAA TGAATGA ACGT TCATTCA TTTCATAAGGACGTA VF_2522 2830889 - 2831455 + | TetR family transcriptional regulator TERM 3299 2831818 - 2831792 - g 81 -5.9 -5.09245 | TCAAAAGTAGAAAAA GCAAACTTGAA GAGTA CTCAAGCTCGC TTACCTGCAGCAGAA VF_2523 2831474 - 2832580 + | periplasmic component of efflux system TERM 3300 2832658 - 2832676 + G 86 -9.6 -4.11216 | AGCTTTTTGATTGCT TTGCTTGG TAT CCAAGCGA TTTTCAAAATGCAGG TERM 3301 2832732 - 2832717 - g 73 -7.6 -4.13654 | overlap 2832720 CCCTGAAATGACAAA TACCGT TGTA ACGGTA ACAACAAGCTACTAT TERM 3302 2834125 - 2834095 - g 83 -5 -5.24129 | gap 1, opp_overlap 2834095 2834120 CGTTTCGAGAAAAAA GTTCA-TCATATT TTAGAT AATATGAGTGAAC GTTATGAACGTATGC TERM 3303 2834482 - 2834471 - g 74 -4.4 -4.8667 | CAGAGGTGACAAAAA GAGT TGGT ACTC TAGTACAAGACGTTC VF_2524 2832592 - 2835663 + | acriflavin resistance plasma membrane protein TERM 3304 2835702 - 2835677 - f 75 -4.7 -4.88405 | opp_overlap 2835682, overlap 2835682 AATGGTGAAATAAAA TTAAAGGCTAC TTCG GTAGCCTTTTT TTTATTTGGATAGCG TERM 3305 2835682 - 2835697 + F 100 -9 -6.23545 | opp_overlap 2835677 2835682 TGAAATAAAATTAAA GGCTAC TTCG GTAGCC TTTTTTTTATTTGGA TERM 3306 2835697 - 2835682 - f 89 -9 -4.37871 | opp_overlap 2835682, overlap 2835677 TGAAATAAAATTAAA GGCTAC TTCG GTAGCC TTTTTTTTATTTGGA yqiC 2835774 - 2836025 + | hypothetical protein TERM 3307 2836098 - 2836150 + T 84 -11.9 -2.78712 | gap 2, opp_overlap 2836115, overlap 2836115 TGTTATTAATTTATC CAGATTACAATAAAAAAGGCTTGGT CATAA ACCAAGCC-TTTTTATT-TAATTTG TAATTAAATTAGCCA TERM 3308 2836135 - 2836115 - T 100 -11.9 -5.58179 | opp_overlap 2836098 2836115 GATTACAATAAAAAA GGCTTGGTC ATA AACCAAGCC TTTTTATTTAATTTG TERM 3309 2836115 - 2836135 + T 100 -11.2 -5.41941 | opp_overlap 2836115, overlap 2836098 GATTACAATAAAAAA GGCTTGGT CATAA ACCAAGCC TTTTTATTTAATTTG ilvC 2837643 - 2836159 - | ketol-acid reductoisomerase TERM 3310 2838332 - 2838344 + G 86 -9.1 -4.46212 | opp_overlap 2838331 2838330 2838327, overlap 2838326 AAGAGAATAGTAATT GGGAG TTA CTCCC TTTTATACTGCCCGA ilvY 2837770 - 2838654 + | DNA-binding transcriptional regulator IlvY TERM 3311 2838671 - 2838689 + F 100 -14.6 -4.35524 | opp_overlap 2838671 TCTGAAACGAAAAAA GGCTTCCC TAT GGGAAGCC TTTTAAATTTGAGCC TERM 3312 2838689 - 2838671 - f 100 -14.6 -5.37593 | opp_overlap 2838671 TCTGAAACGAAAAAA GGCTTCCC TAT GGGAAGCC TTTTAAATTTGAGCC TERM 3313 2838938 - 2838961 + F 100 -9.6 -4.74103 | opp_overlap 2838941, overlap 2838941 TTAATTTAATCAAAA AAAGCCATCC GATA GGATGGCTTC TTTTTAAATTCAAGC TERM 3314 2838958 - 2838941 - f 100 -11.3 -5.64006 | opp_overlap 2838938 2838941 ATTTAATCAAAAAAA GCCATCC GATA GGATGGC TTCTTTTTAAATTCA TERM 3315 2838941 - 2838958 + F 100 -11.3 -4.47888 | opp_overlap 2838941, overlap 2838938 ATTTAATCAAAAAAA GCCATCC GATA GGATGGC TTCTTTTTAAATTCA TERM 3316 2840795 - 2840811 + F 85 -9.4 -4.08546 | overlap 2840787 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3317 2841588 - 2841600 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3318 2842116 - 2842135 + F 73 -8.6 -3.23708 | overlap 2842119 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3319 2842342 - 2842304 - f 71 -7.6 -3.53091 | overlap 2842317 ATGTTTCTTTCGAAA CCATTTTTAAAAACTCTC AAG GAGAATACTTAAAGATGG TGGGCGATACCGGGC TERM 3320 2842611 - 2842631 + F 80 -9.1 -3.63326 | GGGACACTGGATATT TGAAGATGT TGG GCATCTTCA TTGCTTCTTTACATT TERM 3321 2842711 - 2842730 + F 72 -9.2 -2.65808 | opp_overlap 2842702, overlap 2842708 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3322 2844480 - 2844506 + F 90 -11.6 -3.57263 | TTCCGCTTCGTCGTT TCAGGCTGCGTA TAA TACGCTGTCTGA TTTGAAAGTCAAGAT TERM 3323 2844634 - 2844605 - f 100 -13.7 -3.64822 | opp_overlap 2844610, overlap 2844610 AGTCTGGGAGCGAAA TAAAAGCCCGTTC AACT GAACGGGCTCTCA TTCAAATTCAAGCCT TERM 3324 2844629 - 2844610 - f 100 -13.6 -4.90778 | opp_overlap 2844610, overlap 2844605 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3325 2844610 - 2844629 + F 89 -13.6 -2.92246 | opp_overlap 2844610 2844605 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3326 2846468 - 2846484 + F 85 -9.4 -4.08546 | overlap 2846460 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3327 2847261 - 2847273 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3328 2847789 - 2847808 + F 73 -8.6 -3.23708 | overlap 2847792 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3329 2848015 - 2847977 - f 71 -7.6 -3.53091 | overlap 2847990 ATGTTTCTTTCGAAA CCATTTTTAAAAACTCTC AAG GAGAATACTTAAAGATGG TGGGCGATACCGGGC TERM 3330 2848284 - 2848304 + F 80 -9.1 -3.63326 | GGGACACTGGATATT TGAAGATGT TGG GCATCTTCA TTGCTTCTTTACGTT TERM 3331 2848384 - 2848403 + F 72 -9.2 -2.65808 | opp_overlap 2848375, overlap 2848381 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3332 2850153 - 2850179 + F 90 -11.6 -3.57263 | TTCCGCTTCGTCGTT TCAGGCTGCGTA TAA TACGCTGTCTGA TTTGAAAGTCAAGAT TERM 3333 2850307 - 2850278 - f 100 -13.7 -3.64822 | opp_overlap 2850283, overlap 2850283 AGTCTGGGAGCGAAA TAAAAGCCCGTTC AACT GAACGGGCTCTCA TTCAAATTCAAGCCT TERM 3334 2850302 - 2850283 - f 100 -13.6 -4.90778 | opp_overlap 2850283, overlap 2850278 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3335 2850283 - 2850302 + F 89 -13.6 -2.92246 | opp_overlap 2850283 2850278 GGGAGCGAAATAAAA GCCCGTTC AACT GAACGGGC TCTCATTCAAATTCA TERM 3336 2852139 - 2852155 + F 85 -9.4 -4.08546 | overlap 2852131 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3337 2852932 - 2852944 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3338 2853460 - 2853479 + F 73 -8.6 -3.23708 | overlap 2853463 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3339 2853676 - 2853643 - f 89 -8.5 -4.55798 | opp_overlap 2853643, overlap 2853630 GAGCTTAAAGCAAAA GCTTTAATCAATAAT AAAG ATTATTAATTAAAAC TCTTTATCTTTAATT TERM 3340 2853756 - 2853775 + F 72 -9.2 -2.65808 | opp_overlap 2853747, overlap 2853753 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3341 2855677 - 2855696 + F 83 -6.6 -4.98255 | overlap 2855671 AGCAAGCCCTTTTTT CAAAAAAA ATCG TTTTTTTG TTTTTATGGTTAAAG yrdA 2855789 - 2856334 + | hypothetical protein VF_2534 2856590 - 2856327 - | hypothetical protein aroE 2857410 - 2856601 - | shikimate 5-dehydrogenase rimN 2858040 - 2857483 - | ribosome maturation factor purE 2858240 - 2858725 + | N5-carboxyaminoimidazole ribonucleotide mutase TERM 3342 2859033 - 2859021 - g 87 -4.9 -5.40072 | CCGTCTTGAAAAAAA GTTAT TAG ATAAC GCGCATGTTGCAAAT purK 2858728 - 2859840 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 3343 2859853 - 2859883 + T 75 -10 -2.77182 | opp_overlap 2859843 2859852, overlap 2859843 2859850 2859855 TAAATCTCAAGGTAT GAGTAACTTAAT ACTTGTG ATTAAGTTACTC TGATTGGCTCTGAAC yrdD 2860447 - 2859878 - | DNA topoisomerase smg 2860931 - 2860458 - | hypothetical protein dprA 2862043 - 2860934 - | DNA processing protein DprA VF_2542 2863122 - 2862052 - | peptidoglycan binding domain-containing protein def 2863240 - 2863752 + | peptide deformylase fmt 2863770 - 2864717 + | methionyl-tRNA formyltransferase TERM 3344 2864733 - 2864758 + F 77 -6.1 -4.65895 | opp_overlap 2864737, overlap 2864737 TTCTTCAAAAATATA AAAAGGTGGCA TAAT TGCCACCTTCG TTTTTAAATGGCAAA TERM 3345 2864754 - 2864737 - f 100 -11.3 -5.36364 | opp_overlap 2864733 2864737 TCAAAAATATAAAAA GGTGGCA TAAT TGCCACC TTCGTTTTTAAATGG TERM 3346 2864737 - 2864754 + F 90 -11.3 -3.83042 | opp_overlap 2864737, overlap 2864733 TCAAAAATATAAAAA GGTGGCA TAAT TGCCACC TTCGTTTTTAAATGG TERM 3347 2864786 - 2864768 - f 78 -10.4 -2.71712 | opp_overlap 2864768, overlap 2864767 CCTTCGTTTTTAAAT GGCAAATA TCG TATTTGCC TTTTTATTTTTGCCA TERM 3348 2864768 - 2864786 + F 100 -10.4 -5.61881 | opp_overlap 2864768 2864767 CCTTCGTTTTTAAAT GGCAAATA TCG TATTTGCC TTTTTATTTTTGCCA rsmB 2864822 - 2866102 + | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent trkA 2866127 - 2867503 + | potassium transporter peripheral membrane component TERM 3349 2867537 - 2867565 + G 85 -8.9 -4.17296 | opp_overlap 2867525 2867539, overlap 2867526 2867525 2867524 CGATCCTATTTGTAA TAGGGCTTGTTTT ATC AAAACTCGCCCTA TTTATGTATATCCCG TERM 3350 2867629 - 2867666 + G 73 -7.8 -3.84451 | overlap 2867624 2867637 TTTATCGAATTTGGA CAAGCGGTTGCCATTA CTCACA TAGTGGCATTTGCTTG TTTAACTTTGGGCCG TERM 3351 2867746 - 2867768 + G 70 -3.4 -4.89838 | overlap 2867729 CTTGTGTGGACCATT GCAAGTGC TTTCGCT GCACTTCC TTTTGTGTTTATTAA TERM 3352 2868430 - 2868449 + G 71 -5 -4.56914 | overlap 2868431 GTGTTTAATATTGTT TCTGTTGT GACT ACAACGGG TTTTGGTTTGGATGA trkH2 2867506 - 2868951 + | Trk system potassium uptake protein TrkH TERM 3353 2868970 - 2868993 + T 90 -8.2 -5.38054 | opp_overlap 2868970 AGTAACAATGAAAAA TGACCTAGTA TTTC TACTAGGCCA TTTTTATTTATAAAC TERM 3354 2868993 - 2868970 - T 100 -10.4 -5.00339 | opp_overlap 2868970 AGTAACAATGAAAAA TGACCTAGTA TTTC TACTAGGCCA TTTTTATTTATAAAC yqfA 2869661 - 2869014 - | oxidoreductase, inner membrane subunit TERM 3355 2869746 - 2869691 - R 79 -9.2 -3.34043 | opp_overlap 2869699, overlap 2869667 2869664 2869696 2869704 GTGATTACTCGATAA GATCAGTATGACACATTTAAGCGTAC AGTT GTAAGCTTAAATGTGTCATTTTTTTC ATCAAACCTATCAAT TERM 3356 2869741 - 2869696 - R 84 -12.1 -2.8055 | opp_overlap 2869699, overlap 2869691 2869704 TACTCGATAAGATCA GTATGACACATTTAAGCGTAC AGTT GTAAGCTTAAATGTGTCATTT TTTTCATCAAACCTA TERM 3357 2869699 - 2869738 + r 100 -18.2 -5.52384 | opp_overlap 2869696 2869691 2869704 TCGATAAGATCAGTA TGACACATTTAAGCGTAC AGTT GTAAGCTTAAATGTGTCA TTTTTTTCATCAAAC TERM 3358 2869733 - 2869704 - R 81 -10.9 -2.84459 | opp_overlap 2869699, overlap 2869696 2869691 AAGATCAGTATGACA CATTTAAGCGTAC AGTT GTAAGCTTAAATG TGTCATTTTTTTCAT VF_2549 2870549 - 2869761 - | putative Gram-positive sporulation control protein Spo0M TERM 3359 2870201 - 2870218 + g 72 -8.5 -3.45027 | overlap 2870200 CCCACACTTTGGCAT CACCAAT CGTA ATTGGTG TATTTAGTGGAAGAT TERM 3360 2870645 - 2870659 + H 83 -6.4 -5.0133 | overlap 2870647 ATTGACAGTTTATGT TACCCT TAT AGGGTG TTTTTTAAACACATA TERM 3361 2870647 - 2870657 + H 71 -6.8 -4.13561 | overlap 2870645 TGACAGTTTATGTTA CCCT TAT AGGG TGTTTTTTAAACACA VF_2662 2870790 - 2870957 + | hypothetical protein TERM 3362 2870965 - 2870984 + F 93 -7.8 -5.75538 | opp_overlap 2870965, overlap 2870981 2870983 CGGCATAATTTAAAA GCGTAGCC TATT GGTTGCGC TTTTTCTTTTTTAAA TERM 3363 2870981 - 2871005 + F 72 -2.9 -5.28176 | opp_overlap 2870965, overlap 2870965 2870983 CGTAGCCTATTGGTT GCGCTTTTT CTTTTTT AAAAAGCAC TTTTTTCTACATGAG TERM 3364 2871148 - 2871128 - g 72 -8.5 -3.55563 | overlap 2871145 ATGTCACCGCGTAAA TGAATTAAT CGA ATTAATTCA CCCTGAATGGAAAAA yihD 2871108 - 2871371 + | hypothetical protein TERM 3365 2871387 - 2871416 + F 73 -7.9 -3.83998 | opp_overlap 2871411, overlap 2871388 GTAACTCACCATGCT ATGATCTGGTTTG TCAC CGAACCAGATCGG TTTCCTATCAAATAA TERM 3366 2871388 - 2871415 + F 83 -11.4 -2.90078 | opp_overlap 2871411, overlap 2871387 TAACTCACCATGCTA TGATCTGGTTTG TCAC CGAACCAGATCG GTTTCCTATCAAATA VF_2551 2871583 - 2873001 + | hypothetical protein TERM 3367 2873024 - 2873038 + F 93 -7.8 -5.45652 | opp_overlap 2873024 ATTACTGACACAAAA GGCTCG TAA TGAGCC TTTTTTATTGAGAAT TERM 3368 2873038 - 2873024 - f 80 -7.1 -4.55689 | opp_overlap 2873024 ATTACTGACACAAAA GGCTC GTAAT GAGCC TTTTTTATTGAGAAT rdoA 2873052 - 2874041 + | serine/threonine protein kinase TERM 3369 2874207 - 2874197 - g 70 -3.2 -4.94972 | TACCAGAATCAAAAA CACC GAC AGTG AATGAATTTTTCTCT dsbA 2874082 - 2874684 + | periplasmic protein disulfide isomerase I TERM 3370 2874704 - 2874723 + T 100 -13.6 -6.01369 | opp_overlap 2874704 ATAAGCAAATAAAAA GGGAGCGA ATTA TCGCTCCC TTTTTTTATTCTTTG TERM 3371 2874723 - 2874704 - T 100 -13.6 -5.39681 | opp_overlap 2874704 ATAAGCAAATAAAAA GGGAGCGA ATTA TCGCTCCC TTTTTTTATTCTTTG yihG 2875604 - 2874729 - | endonuclease VF_2555 2877218 - 2875692 - | magnesium chelatase TERM 3372 2876984 - 2876968 - G 73 -9.5 -3.25341 | opp_overlap 2876966, overlap 2876966 2876975 2876979 ATCCCAAGAGCAATA GGAAGAT CAA ATCTTCC ACCTTCTTTTGGAAG ivbL 2877407 - 2877496 + | ilvB operon leader peptide TERM 3373 2877517 - 2877540 + F 86 -5.1 -5.66684 | opp_overlap 2877517 CAAGCACACTAAAAA CCCCCAAGC CAACAA GCAAGGGGG TTTTTTTATAAGTTC TERM 3374 2877540 - 2877517 - f 81 -5.8 -4.84274 | opp_overlap 2877517 CAAGCACACTAAAAA CCCCCAAGCC AACA AGCAAGGGGG TTTTTTTATAAGTTC TERM 3375 2879008 - 2879025 + G 70 -2.7 -5.0917 | gap 1, overlap 2879011 CCAACGTTTAGGCAT GGTTCGCC AAT GGC-AATC TTTGTTTTTTGATGG ilvB 2877566 - 2879272 + | acetolactate synthase 2 catalytic subunit ilvM 2879272 - 2879517 + | acetolactate synthase 2 regulatory subunit ilvE 2879530 - 2880477 + | branched-chain amino acid aminotransferase TERM 3376 2881679 - 2881662 - g 71 -4.1 -4.90079 | ATCCGAACAACAAAA GCATTCT CGCA AGATTGC CGTTGGGATCGCCTT ilvD 2880495 - 2882336 + | dihydroxy-acid dehydratase TERM 3377 2882362 - 2882386 + G 78 -10.7 -3.01712 | opp_overlap 2882363 2882374 2882376 AACTCTTCATATCAA ACTGGCGCAGA ATA TCTGCGTCAGA TCTTACGAGCACCAA TERM 3378 2882385 - 2882363 - g 91 -12 -3.83205 | opp_overlap 2882362, overlap 2882374 2882376 ACTCTTCATATCAAA CTGGCGCAGA ATA TCTGCGTCAG ATCTTACGAGCACCA ilvA 2882341 - 2883873 + | threonine dehydratase TERM 3379 2883889 - 2883913 + F 89 -8.7 -4.43911 | opp_overlap 2883892 GACCGTACGGCGTAA TAAGGCTAATT AAA ATTTAGCCTTA TTTTCATTCAAATTT TERM 3380 2884105 - 2884119 + F 85 -8.6 -4.15396 | opp_overlap 2884104 2884105 CTTTATGGCTACAAC TTCGCA TTA TGCGAA TTATTTAATTTAAAA VF_2561 2884150 - 2884359 + | cold shock protein TERM 3381 2884390 - 2884407 + T 100 -9.9 -6.02914 | opp_overlap 2884390 TAGAATTTTTAAAAA TGCTGAC TTCG GTCAGCA TTTTTTTTATCTCGA TERM 3382 2884407 - 2884390 - T 100 -9.9 -4.63542 | opp_overlap 2884390 TAGAATTTTTAAAAA TGCTGAC TTCG GTCAGCA TTTTTTTTATCTCGA TERM 3383 2884482 - 2884443 - T 87 -12.4 -2.99545 | opp_overlap 2884455, overlap 2884447 2884455 TCTATAGACTAGACA GATATAAAAAAAGAAGCC TAAT GGCTTCTTTTTTACTATC AATAGATTATCTATA TERM 3384 2884477 - 2884447 - T 74 -9.3 -3.07534 | gap 1, opp_overlap 2884455, overlap 2884443 2884455 TAGACTAGACAGATA TAAAAAAAGAAGCC TAAT GGCTTC-TTTTTTA CTATCAATAGATTAT TERM 3385 2884455 - 2884470 + T 95 -9 -5.22312 | opp_overlap 2884455 2884447 2884443 ACAGATATAAAAAAA GAAGCC TAAT GGCTTC TTTTTTACTATCAAT TERM 3386 2884470 - 2884455 - T 100 -9 -5.77988 | opp_overlap 2884455, overlap 2884447 2884443 ACAGATATAAAAAAA GAAGCC TAAT GGCTTC TTTTTTACTATCAAT glmU 2885858 - 2884500 - | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 3387 2886065 - 2886026 - R 74 -3.1 -5.24515 | gap 2, opp_overlap 2886038, overlap 2886038 AAGAAATAAACAAAA TTGAAAAGAAAAGGCGACC TATT GGCCGCCTTCT-TTCT-AA TGGTGCTTGATTAAC TERM 3388 2886038 - 2886055 + r 81 -8.3 -4.12254 | opp_overlap 2886026 2886038 AAATTGAAAAGAAAA GGCGACC TATT GGCCGCC TTCTTTCTAATGGTG TERM 3389 2886055 - 2886038 - R 100 -10.5 -5.14698 | opp_overlap 2886038, overlap 2886026 AAATTGAAAAGAAAA GGCGACC TATT GGCCGCC TTCTTTCTAATGGTG atpC 2886498 - 2886076 - | F0F1 ATP synthase subunit epsilon atpD 2887920 - 2886517 - | F0F1 ATP synthase subunit beta TERM 3390 2887206 - 2887188 - G 71 -7.4 -3.87112 | CAACGAACAACAGAA CGTCACGA CCT TCGTCACG GAAACGTTCAGCCAT atpG 2888820 - 2887954 - | F0F1 ATP synthase subunit gamma TERM 3391 2888714 - 2888726 + g 71 -4.8 -4.57073 | GCTTCCATCGACTCT TGCG AGCGA CGCA TTTTTGAAGCGGCTA atpA 2890407 - 2888866 - | F0F1 ATP synthase subunit alpha atpH 2890954 - 2890421 - | F0F1 ATP synthase subunit delta atpF 2891436 - 2890972 - | F0F1 ATP synthase subunit B atpE 2891755 - 2891498 - | F0F1 ATP synthase subunit C atpB 2892625 - 2891813 - | F0F1 ATP synthase subunit A TERM 3392 2892600 - 2892628 + g 73 -5.9 -4.58236 | overlap 2892614 ATGTAACCAGATTGT GTTAGCGCTTCGC CTG GCGCAGCCATAAC TTTTCCTATTTTCTG atpI 2893023 - 2892634 - | F0F1 ATP synthase subunit I VF_2572 2894096 - 2893212 - | chromosome partitioning protein ParB TERM 3393 2893394 - 2893406 + g 77 -4.8 -4.86293 | overlap 2893370 CTTCCTCTTTTTGAG GAGC CAATA GCTC TTTTACTTTTTGTTC VF_2573 2894886 - 2894089 - | chromosome partitioning protein ParA gidB 2895534 - 2894902 - | glucose-inhibited division protein B mnmG 2897425 - 2895536 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3394 2895898 - 2895924 + g 73 -5.8 -4.62336 | overlap 2895900 GACGTAGAAGATCCT CACCACTTGCTT CAC GAGCAATTGGCG TTTTTAGGATCGCAT SEQUENCE gi|172087787|ref|NC_006841.2| Vibrio fischeri ES114 chromosome II, complete sequence (length 1330333) VF_A0001 1053 - 3038 + | hypothetical protein TERM 1 3202 - 3223 + F 100 -9.4 -5.71712 | overlap 3203 TTTAAATAATTGTAT TGGCGAGC CTCAGA GCTCGCCG TTTTTTTATCTGCAA TERM 2 3203 - 3222 + F 93 -10.7 -4.01943 | overlap 3202 TTAAATAATTGTATT GGCGAGC CTCAGA GCTCGCC GTTTTTTTATCTGCA TERM 3 3430 - 3412 - g 72 -3.1 -5.09762 | CGCCAAGAAACAAAA CAACGCA TGAGC CGCATTG TAAAACACAATGGAA yoaB 3388 - 3735 + | hypothetical protein TERM 4 3743 - 3776 + F 83 -6.1 -5.14563 | opp_overlap 3746, overlap 3744 3746 AAAAGTAATATAAAT TAAGTGATTACCAAT TTAT ATTGGTGATCACTGC TTTTTTAATCAAACA TERM 5 3744 - 3775 + F 82 -9.6 -3.68256 | opp_overlap 3746, overlap 3743 3746 AAAGTAATATAAATT AAGTGATTACCAAT TTAT ATTGGTGATCACTG CTTTTTTAATCAAAC TERM 6 3773 - 3746 - f 82 -10 -3.69943 | opp_overlap 3744 3743 3746 AGTAATATAAATTAA GTGATTACCAAT TTAT ATTGGTGATCAC TGCTTTTTTAATCAA TERM 7 3746 - 3773 + F 90 -12.2 -3.41701 | opp_overlap 3746, overlap 3744 3743 AGTAATATAAATTAA GTGATTACCAAT TTAT ATTGGTGATCAC TGCTTTTTTAATCAA VF_A0003 4045 - 5586 + | hypothetical protein TERM 8 5887 - 5919 + T 85 -9.3 -3.91882 | opp_overlap 5892, overlap 5892 TGAACTTTTATCCAA AAAAACAGCCACT ATCATCG AGTGGCTGTTTTA TTATATTTATGATAA TERM 9 5892 - 5914 + T 100 -9.2 -4.96657 | opp_overlap 5892, overlap 5887 TTTTATCCAAAAAAA CAGCCACT ATCATCG AGTGGCTG TTTTATTATATTTAT TERM 10 5914 - 5892 - T 100 -9.2 -5.47218 | opp_overlap 5892 5887 TTTTATCCAAAAAAA CAGCCACT ATCATCG AGTGGCTG TTTTATTATATTTAT pepT3 7050 - 5944 - | peptidase T-like protein TERM 11 7031 - 7052 + g 82 -3.7 -5.44198 | overlap 7034 TGATTTACTAAACGT TCTTGATTC ACTT GAGTCATGA TTTTTCTTCTTTCTT VF_A0005 7276 - 8412 + | peptide-methionine (S)-S-oxide reductase VF_A0006 8513 - 8833 + | hypothetical protein TERM 12 8904 - 8867 - T 75 -8.5 -3.44334 | opp_overlap 8872, overlap 8872 GCAAATCAATAGTAA GAAAACCCCAGCTCATC AGTG GTTAAGCTAGGGTTTTT ATTATATAGGTATAA TERM 13 8872 - 8899 + T 76 -4 -5.24796 | opp_overlap 8872 8867 TCAATAGTAAGAAAA CCCCAGCTCATC AGTG GTTAAGCTAGGG TTTTTATTATATAGG TERM 14 8899 - 8872 - T 86 -8.4 -4.78753 | opp_overlap 8872, overlap 8867 TCAATAGTAAGAAAA CCCCAGCTCATC AGTG GTTAAGCTAGGG TTTTTATTATATAGG TERM 15 8906 - 8919 + T 72 -2.5 -5.28281 | AAGCTAGGGTTTTTA TTATA TAGG TATAA TTTTATTTATTTTGT VF_A0007 9485 - 8922 - | glutathione-dependent formaldehyde-activating enzyme VF_A0008 9889 - 10761 + | phospholipase katA 10816 - 12264 + | hydroperoxidase HPII(III) (catalase) KatA TERM 16 12282 - 12299 + F 93 -8.4 -5.4492 | opp_overlap 12282 AAAAAGTTAATATAA GGCGAC GAATGA GTCGCC TTTTTTATGTCTATC TERM 17 12299 - 12282 - f 75 -8.4 -3.76383 | opp_overlap 12282 AAAAAGTTAATATAA GGCGAC GAATGA GTCGCC TTTTTTATGTCTATC TERM 18 12349 - 12333 - g 84 -6.7 -4.90778 | opp_overlap 12332 TTGATTTAAATAAAA TTTATCA AAA TGATAAA GTCGTTACTGTTATG VF_A0010 12290 - 12406 + | hypothetical protein VF_A0011 12484 - 13023 + | hypothetical protein TERM 19 13035 - 13061 + T 83 -8.1 -4.37157 | gap 1 CTAGTCTGATTTTAT GAGCGGT-TATC ATTT GGTATACCGCTC TTTATTATGATGGTT VF_A0012 13281 - 13066 - | hypothetical protein VF_A0013 13291 - 14469 + | chitin-binding protein TERM 20 14549 - 14513 - f 77 -9.7 -3.12874 | opp_overlap 14515 14520, overlap 14501 14515 14520 ATATATATTACCTAA TATAAAAGCCCTAAA TTAGCCG TTTAGGGCTTTTATT ATAACCAATGCTTAT TERM 21 14547 - 14515 - f 87 -12.3 -3.12036 | opp_overlap 14515 14520, overlap 14501 14513 14520 ATATATTACCTAATA TAAAAGCCCTAAA TTAGCCG TTTAGGGCTTTTA TTATAACCAATGCTT TERM 22 14515 - 14547 + F 91 -13 -3.30619 | opp_overlap 14501 14513 14515 14520, overlap 14520 ATATATTACCTAATA TAAAAGCCCTAAAT TAGCC GTTTAGGGCTTTTA TTATAACCAATGCTT TERM 23 14542 - 14520 - f 83 -7.8 -4.68724 | opp_overlap 14515 14520, overlap 14515 14513 TTACCTAATATAAAA GCCCTAAA TTAGCCG TTTAGGGC TTTTATTATAACCAA TERM 24 14520 - 14542 + F 93 -8.5 -4.77165 | opp_overlap 14520 14515 14513, overlap 14515 TTACCTAATATAAAA GCCCTAAAT TAGCC GTTTAGGGC TTTTATTATAACCAA VF_A0014 14679 - 15218 + | hypothetical protein TERM 25 15266 - 15285 + F 93 -7.8 -5.56673 | opp_overlap 15266 ATGATTATTCTTAAA GCTCTGGA TTTT TCCGGGGC TTTTTTATTGTGCAT VF_A0015 15469 - 17055 + | ABC transporter ATP-binding protein TERM 26 17087 - 17110 + F 100 -11 -5.95449 | opp_overlap 17087 TAAGATCTTTAAAAA CGCGAGTTTG ATTA CCAACTCGCG TTTTTTATTTTGTTT TERM 27 17110 - 17087 - f 100 -11 -4.62302 | opp_overlap 17087 TAAGATCTTTAAAAA CGCGAGTTTG ATTA CCAACTCGCG TTTTTTATTTTGTTT TERM 28 17448 - 17460 + G 74 -4.1 -5.1101 | TTGCTCATAATGCCT CGTTT GAT AAGCG TTTTTTAGATGGTGA VF_A0016 17141 - 17779 + | DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) VF_A0017 19294 - 17825 - | putative lipoprotein VF_A0018 19819 - 20880 + | ribosome-associated GTPase TERM 29 20935 - 20898 - f 87 -13 -2.70023 | opp_overlap 20903, overlap 20903 TACAAAGATAACTTA TAAAACCGCCTTTATT ATTTTG AATAAAGGCGGTTTTT TGCTATCTGGCTATA TERM 30 20930 - 20903 - f 100 -12.9 -4.49939 | opp_overlap 20903, overlap 20898 AGATAACTTATAAAA CCGCCTTTATT ATTTTG AATAAAGGCGG TTTTTTGCTATCTGG TERM 31 20903 - 20930 + F 100 -12.9 -5.24989 | opp_overlap 20903 20898 AGATAACTTATAAAA CCGCCTTTATT ATTTTG AATAAAGGCGG TTTTTTGCTATCTGG TERM 32 21232 - 21248 + G 72 -4.3 -4.72986 | overlap 21235 CATTATAGTATCTAT GGTTCCC GGT GGGATTC TTTTTAGTGCGGATC TERM 33 21235 - 21245 + G 76 -6.8 -4.47707 | overlap 21232 TATAGTATCTATGGT TCCC GGT GGGA TTCTTTTTAGTGCGG VF_A0019 21110 - 21634 + | hypoxanthine-guanine phosphoribosyltransferase VF_A0020 21694 - 21945 + | hypothetical protein VF_A1173 22154 - 22002 - | hypothetical protein VF_A1174 22528 - 22298 - | hypothetical protein TERM 34 22857 - 22846 - g 76 -4.4 -5.1485 | TAAGGAATAGAAAAA TGGT CACC ACCA CTCCAACGCGTTTTA TERM 35 22919 - 22932 + G 71 -5.3 -4.57073 | TTATTGGACACTTAG TGGTT CTAC AACCA TTTTTGAAGAAGCTG VF_A1175 22845 - 23030 + | hypothetical protein TERM 36 23062 - 23098 + F 100 -14.7 -3.78022 | opp_overlap 23068, overlap 23068 TTTGTAGTGCATGAG TATAAAGGACAACGTTA ATT TAGCGTTGTCCTTTTTA TTTAATAACTATAAA TERM 37 23068 - 23092 + F 100 -13.7 -5.33405 | opp_overlap 23068, overlap 23062 GTGCATGAGTATAAA GGACAACGTTA ATT TAGCGTTGTCC TTTTTATTTAATAAC TERM 38 23092 - 23068 - f 93 -11.5 -3.99324 | opp_overlap 23068 23062 GTGCATGAGTATAAA GGACAACGTTA ATT TAGCGTTGTCC TTTTTATTTAATAAC TERM 39 23312 - 23330 + F 73 -8.9 -3.26433 | opp_overlap 23311 23312 23314 TAAAGGCAAAAAATG CACCTAC AAAAA GTAGGTG TTAATAATGTCATTA TERM 40 23551 - 23563 + G 72 -3.3 -5.1101 | TTGGCCCTGTATTTT CTGCC GTT GGTGG TTTTTTAGCTGATAA VF_A0021 23364 - 24878 + | di-/tripeptide transporter TERM 41 24935 - 24907 - T 100 -13.4 -4.73614 | opp_overlap 24907 24910 24915, overlap 24915 GATGAGCAAAAGAAA TAAGAAAAGAGC GAATA GCTCTTTTCTTA TTCTGTTTGGTGGGA TERM 42 24907 - 24935 + T 100 -13.4 -3.86252 | opp_overlap 24907 24915, overlap 24910 24915 GATGAGCAAAAGAAA TAAGAAAAGAGC GAATA GCTCTTTTCTTA TTCTGTTTGGTGGGA TERM 43 24910 - 24932 + T 93 -10.7 -4.05193 | opp_overlap 24907 24915, overlap 24907 24915 GAGCAAAAGAAATAA GAAAAGAGC GAATA GCTCTTTTC TTATTCTGTTTGGTG TERM 44 24927 - 24915 - T 77 -4.8 -5.10765 | opp_overlap 24915 24910 24907, overlap 24907 AAAGAAATAAGAAAA GAGC GAATA GCTC TTTTCTTATTCTGTT TERM 45 24915 - 24927 + T 75 -4.8 -4.99312 | opp_overlap 24907 24915, overlap 24910 24907 AAAGAAATAAGAAAA GAGC GAATA GCTC TTTTCTTATTCTGTT VF_A0022 25416 - 25270 - | hypothetical protein TERM 46 25467 - 25445 - R 85 -10.6 -3.51032 | AGTTTTCAACGACAA TTAGCCGCCA ATA CGACGGCTAA TAATGGAGTAATTGA VF_A0023 26298 - 25486 - | enoyl-CoA hydratase VF_A0024 26478 - 27428 + | LysR family transcriptional regulator VF_A0025 27910 - 27455 - | MarR family transcriptional regulator VF_A0026 28028 - 28330 + | hypothetical protein TERM 47 28367 - 28389 + T 100 -10.6 -5.27477 | opp_overlap 28361 28367 TATTGAAAATCTAAA GCCGAGTG AGATATA CACTCGGC TTTTTTGCTTACGCT TERM 48 28389 - 28367 - T 93 -10.6 -3.9373 | opp_overlap 28367, overlap 28361 TATTGAAAATCTAAA GCCGAGTG AGATATA CACTCGGC TTTTTTGCTTACGCT VF_A0027 29642 - 28398 - | NADH oxidase TERM 49 29672 - 29709 + r 93 -13.6 -3.27766 | overlap 29673 TATATTATTATGTGA TTAGGGCGTGTTAATC ATAAAA GATCAACACGCCCTAG TTAGTATGCACTATT TERM 50 29673 - 29708 + r 95 -14.9 -2.56177 | overlap 29672 ATATTATTATGTGAT TAGGGCGTGTTAATC ATAAAA GATCAACACGCCCTA GTTAGTATGCACTAT setC 30981 - 29782 - | sugar efflux system VF_A0029 31173 - 32060 + | AraC family transcriptional regulator VF_A0030 32176 - 33033 + | drug/metabolite exporter family protein TERM 51 33047 - 33078 + T 86 -11 -3.3082 | opp_overlap 33047 33051, overlap 33045 33051 AGACATAAAATCAAT GAAAGCGCTAATTT ACTT AAGTTAGCGCTTAC TCTCTTTGATAAGTT TERM 52 33051 - 33074 + T 85 -10.4 -3.43328 | opp_overlap 33047 33051, overlap 33047 33045 ATAAAATCAATGAAA GCGCTAATTT ACTT AAGTTAGCGC TTACTCTCTTTGATA TERM 53 33074 - 33051 - T 81 -8.2 -4.08579 | opp_overlap 33051 33047 33045, overlap 33047 ATAAAATCAATGAAA GCGCTAATTT ACTT AAGTTAGCGC TTACTCTCTTTGATA VF_A0031 33999 - 33115 - | LysR family transcriptional regulator VF_A0032 34163 - 34696 + | thioredoxin peroxidase TERM 54 34755 - 34727 - T 100 -11.1 -4.21275 | TTAATTGATTGAAAA GGGGCCAACAA TTCTACT TTGTTAGCCCC TTAAAATGCATAATG VF_A0033 35157 - 34786 - | hypothetical protein TERM 55 35081 - 35102 + g 82 -3.7 -5.47399 | GTTGCGGTTAACCAA CCAAGGTCA GTAT TCACTTTGG TTTTTTTACAGTTAA VF_A0034 36129 - 35233 - | LysR family transcriptional regulator yjcS 36247 - 38268 + | alkyl sulfatase TERM 56 38300 - 38285 - T 88 -6.1 -5.64006 | opp_overlap 38284 ATTTAATGAAAAAAA TGCCC TATTGT GGGCA ATGTAATGCCAGTCA TERM 57 38331 - 38307 - T 79 -10.1 -3.17075 | opp_overlap 38307 TTGTGGGCAATGTAA TGCCAGTCA GTTAAGT TGACTGGCA TTTTTAGTTTGGTGG TERM 58 38307 - 38331 + T 100 -11.5 -5.01811 | opp_overlap 38307 TTGTGGGCAATGTAA TGCCAGTCAGT TAA GTTGACTGGCA TTTTTAGTTTGGTGG VF_A0036 39178 - 38543 - | hypothetical protein VF_A0037 40587 - 39175 - | hypothetical protein TERM 59 40504 - 40536 + g 71 -6.4 -4.20367 | opp_overlap 40513 ACAGCCATTATTTCC GATGATAACCGTAA ACGCA TTACGCTCATCATC TTCTTTATTCCAGAG VF_A0038 40996 - 41835 + | LysR family transcriptional regulator VF_A1176 41984 - 42070 + | hypothetical protein uhpC 43449 - 42109 - | regulatory protein UhpC TERM 60 42632 - 42650 + g 73 -8.8 -3.66844 | GTGAGATACAGGTTT CCCCAGTC ATT GACTGCGG TTCTTACGATGTAAA uhpB 44915 - 43458 - | sensory histidine kinase UhpB uhpA 45562 - 44954 - | DNA-binding response regulator in two-component regulatory system wtih UhpB TERM 61 45672 - 45707 + r 80 -10.5 -3.14422 | overlap 45666 AACGTTATTGGTATG ATCTCGCGCGCTTTA GCTAGG TAAAGCGCGCGAAAG TATTACGCTTGTTTT TERM 62 45722 - 45735 + r 74 -2.4 -5.44119 | GTATTACGCTTGTTT TGCA GCTAGG TGCA TTTTTTTAGCGTGAC uhpT 47104 - 45710 - | sugar phosphate antiporter TERM 63 45938 - 45958 + g 70 -3.2 -5.00616 | overlap 45939 GAAAGTACCTTTCAC ACCATCGG CAACA CTGATGGC TTTTTTGGGAACAAA TERM 64 47246 - 47230 - R 81 -9.5 -3.79113 | opp_overlap 47227 AGGGTCTTAGAATAA CTAGGAA AAA TTCCTAG AAATTGATGAGGGAT TERM 65 47306 - 47350 + r 86 -10.3 -3.58446 | opp_overlap 47315, overlap 47304 47308 47315 TATGGTTCTGTTGAG TGTTTTAAAGGATGGATAAAT AGG AATTCTCCATCCTTTAGAATA TGGTTTTTTTATATA TERM 66 47308 - 47348 + r 87 -10.7 -3.33657 | opp_overlap 47315, overlap 47306 47304 47315 TGGTTCTGTTGAGTG TTTTAAAGGATGGATAAAT AGG AATTCTCCATCCTTTAGAA TATGGTTTTTTTATA VF_A0043 48121 - 47378 - | TetR family transcriptional regulator TERM 67 48689 - 48699 + G 70 -5.4 -4.4078 | TGGCATTAGATGCCG CTGA CGC TCAG TTTTCATTAGCAAAA VF_A0044 48364 - 49437 + | acriflavin resistance periplasmic protein VF_A0045 49437 - 50498 + | hypothetical protein VF_A0046 50498 - 53563 + | acriflavin resistance plasma membrane protein TERM 68 53592 - 53625 + T 100 -11.2 -5.64421 | opp_overlap 53596 AGATAACCTATCTGA CCAATCACTGTG TTGTATTATT CACAGTGATTGG TTTTTTGTTTAAAGT VF_A0048 54114 - 53662 - | pentapeptide repeat-containing protein VF_A0049 54515 - 54120 - | ArsR family transcriptional regulator TERM 69 54536 - 54569 + r 85 -8.9 -4.23281 | overlap 54538 CTACCTTTTATGTTG ATTATTGCGCCACTA ACGG TAGTGGCGCGATATG TTTATATTACGTATT TERM 70 54538 - 54567 + r 100 -15.9 -3.70511 | overlap 54536 ACCTTTTATGTTGAT TATTGCGCCACTA ACGG TAGTGGCGCGATA TGTTTATATTACGTA VF_A0050 55536 - 54571 - | transporter TERM 71 54961 - 54971 + g 71 -6.8 -3.965 | overlap 54951 AAGCGCGCCATTCAT TGCG TTT CGCA TTCTTGATTTTGAAG VF_A0051 55692 - 56108 + | putative cytoplasmic protein TERM 72 56185 - 56160 - T 100 -11.9 -5.8901 | opp_overlap 56160 ATATAAAATAAAAAA GCCAAACTGGG TTAT CCAAGTTTGGC TTTTTTGTGCTTATT TERM 73 56160 - 56185 + T 100 -11.9 -5.4111 | opp_overlap 56160 ATATAAAATAAAAAA GCCAAACTGGG TTAT CCAAGTTTGGC TTTTTTGTGCTTATT ydfG 56956 - 56237 - | L-allo-threonine dehydrogenase, NAD(P)-binding TERM 74 56769 - 56785 + g 71 -6.5 -4.21811 | opp_overlap 56769 56767 TCGCCCTGAGCAATA GCCGCTT CAA AAGAGGC TTTGTCTGTTACGTC VF_A0053 57119 - 58021 + | LysR family transcriptional regulator TERM 75 58035 - 58066 + T 95 -8.7 -4.91084 | opp_overlap 58034 58035 AAACATAATTACAAT CGCCATGAAGCAC ACTTGA GTGAATCATGGCG TTTTATTGTTGGATA VF_A0054 58294 - 58085 - | Cro/Cl family transcriptional regulator VF_A0055 58848 - 58306 - | hypothetical protein TERM 76 58548 - 58563 + g 89 -5.4 -5.36441 | opp_overlap 58548 TGATGGTGTTATCAA GGGTAA ACAC TTGCCC TTTTTTGTATAAACG TERM 77 59090 - 59103 + G 75 -2.5 -5.19251 | GTATGAGTGTTCGAT TAAAA CTGA TTTTA TTTTTGTTGGTGTTG TERM 78 60066 - 60044 - g 77 -4.8 -4.87133 | AGGTTTTAAAGAAAA CGGCTCAACT GTT AACTGAGACG GTGAGAAGTCGTGAT VF_A0056 59062 - 60378 + | GGDEF domain-containing protein VF_A0057 62350 - 60359 - | GGDEF domain-containing protein TERM 79 61006 - 60984 - G 77 -7.8 -4.20768 | opp_overlap 60983 60981 60980 ATGGTTAATAAACAA GGTAACCAAT GTG ATTTGTTACC GTGCTTTCTTGAAAA VF_A0058 62928 - 62347 - | hypothetical protein VF_A0059 65114 - 62931 - | TonB-dependent outer membrane receptor cmtB 65673 - 66116 + | mannitol-specific enzyme IIA component of PTS cmtA 66130 - 67527 + | fused mannitol-specific PTS enzymes: IIB component/IIC component yggP 67578 - 68849 + | dehydrogenase TERM 80 68894 - 68859 - f 89 -12 -3.18681 | opp_overlap 68855 68854 GTTTAATTCTATTAA CTTTATGTGGTAGCCT CTAG AGGTTACCACATACAG AGAGGTTTAAGCCTT yggD 68908 - 69426 + | putative DNA-binding transcriptional regulator TERM 81 69670 - 69680 + GT 70 -5.4 -4.4078 | CCACTTCAAGTATTG CCAT TTG ATGG TTTTCATTACACCAA VF_A0066 70207 - 70115 - | hypothetical protein yggC 69436 - 70170 + | putative fructose transport system kinase VF_A0065 70180 - 70926 + | putative hydrolase TERM 82 70985 - 70961 - TR 75 -4.9 -4.87037 | opp_overlap 70961 AATAGACAGTAAAAA GCCGATACACA TGA CGAGTATTGGC TTTCTTATTCGTATT TERM 83 70961 - 70985 + Tr 76 -6.4 -4.51224 | opp_overlap 70961 AATAGACAGTAAAAA GCCGATACAC ATGAC GAGTATTGGC TTTCTTATTCGTATT VF_A0067 72223 - 71015 - | oxalate/formate antiporter VF_A0068 72415 - 72233 - | hypothetical protein VF_A0069 72796 - 73569 + | hypothetical protein TERM 84 73594 - 73615 + T 100 -9.5 -5.41941 | opp_overlap 73594 ATATTTAGAATATAA GCCATGGTA GAGA TATCATGGC TTTTTATTTGATTTC TERM 85 73615 - 73594 - T 70 -7.3 -3.7697 | opp_overlap 73594 ATATTTAGAATATAA GCCATGGTA GAGA TATCATGGC TTTTTATTTGATTTC VF_A0070 74080 - 73619 - | putative lipoprotein hnoX 74370 - 74903 + | heme nitric oxide and/or oxygen binding protein HNOX VF_A0072 74922 - 76649 + | hybrid two component sensor histidine kinase TERM 86 76672 - 76653 - T 100 -10 -4.89339 | opp_overlap 76653 AAGTATGTATAAAAA GCCTCACA ATAT TGCGAGGC TTTGAATTATAAGAA TERM 87 76653 - 76672 + T 73 -7.8 -3.80625 | opp_overlap 76653 AAGTATGTATAAAAA GCCTCACA ATAT TGCGAGGC TTTGAATTATAAGAA VF_A0073 78190 - 76715 - | di-/tripeptide transporter TERM 88 78385 - 78429 + r 83 -6 -5.08824 | gap 1, opp_overlap 78385 78387 78389 78393 TAATGAGGCAGGGAA TAGATGA-ATCATTCAAAGTG ATTT CTTTTTGAACGATGTCATCTA TTTTTTAAATAAGAG VF_A0074 79375 - 78455 - | hypothetical protein TERM 89 78729 - 78739 + g 72 -3.2 -5.07275 | overlap 78736 ATGGCTTTTTGGAAC TCTG GAG CAGG TTTTTCTGTATCTCC mshQ2 83792 - 79398 - | MshQ protein mshP2 84219 - 83785 - | MshP protein mshO2 84985 - 84191 - | MshO protein mshD2 85539 - 84985 - | MshD protein mshC2 86053 - 85529 - | MSHA pilin protein MshC TERM 90 85854 - 85868 + g 73 -8.6 -3.78597 | TCATTAATTAGCCAT CGGTTA CAG TAACCG TTTCGGTTCATAGCT TERM 91 86040 - 86052 + g 75 -2.7 -5.26875 | GTAAATCCATCTATT TGATT ACG AGTCA TTTTTTCGTTACAAA TERM 92 86396 - 86370 - R 100 -10.3 -5.13473 | opp_overlap 86390 AGTAGATGTAAAAAA GGCAATAATGC ATGAA ACATTATTGCC TAAAAGTAGCCGATA dmsC 87270 - 86425 - | dimethyl sulfoxide reductase, anaerobic, subunit C ynfG 87886 - 87272 - | oxidoreductase, Fe-S subunit TERM 93 87724 - 87739 + g 71 -6.1 -4.17762 | ATGAGTACACACTTT GGCGA TAAATT TCGCC TTCTTTTAGCCAATC dmsA 90335 - 87897 - | dimethyl sulfoxide reductase, anaerobic, subunit A TERM 94 88269 - 88282 + g 74 -4.5 -5.00339 | overlap 88270 TCCGGTTAATTGAAG TGGGT AATT ACCCG TTTTTGATTCTTCAT dmsD 90671 - 91255 + | twin-argninine leader-binding protein for DmsA and TorA VF_A0084 91255 - 91812 + | ferredoxin-type protein NapF TERM 95 91827 - 91866 + T 70 -8.1 -3.28924 | opp_overlap 91837, overlap 91837 GTATGTATTTAAATG CATTAAAAAAGGTGACA ATTGAA TGTCACCTTTTTTATTA TTATGCGAGAAAATA TERM 96 91837 - 91856 + T 93 -7.9 -5.68489 | opp_overlap 91837, overlap 91827 AAATGCATTAAAAAA GGTGACA ATTGAA TGTCACC TTTTTTATTATTATG TERM 97 91856 - 91837 - T 88 -7.9 -5.19261 | opp_overlap 91827 91837 AAATGCATTAAAAAA GGTGACA ATTGAA TGTCACC TTTTTTATTATTATG VF_A0085 92985 - 91891 - | transporter TERM 98 93145 - 93120 - R 70 -4 -4.84311 | opp_overlap 93123, overlap 93123 TGTCACACAAGAAAA TAAGTAGGGC ATGATA ACCCTACTTT ATCTGTTTTATTTTG TERM 99 93142 - 93123 - R 71 -5.7 -4.51787 | opp_overlap 93123, overlap 93120 CACACAAGAAAATAA GTAGGGC ATGATA ACCCTAC TTTATCTGTTTTATT ggt 94907 - 93153 - | gamma-glutamyltranspeptidase TERM 100 95020 - 95048 + r 82 -9.7 -3.64915 | opp_overlap 95018 95022, overlap 95015 95022 CTCACATTTTAAACG AATTGAGAGTGAG TCA TTCACTCTCAATG TTGTGCTTTATGAAG TERM 101 95046 - 95022 - R 90 -11.6 -3.53745 | opp_overlap 95020 95015 95022, overlap 95018 CACATTTTAAACGAA TTGAGAGTGA GTCAT TCACTCTCAA TGTTGTGCTTTATGA TERM 102 95022 - 95046 + r 93 -12.3 -3.39897 | opp_overlap 95022 95018, overlap 95020 95015 CACATTTTAAACGAA TTGAGAGTGAG TCA TTCACTCTCAA TGTTGTGCTTTATGA VF_A0087 96136 - 95069 - | outer membrane protein RomA TERM 103 96310 - 96259 - H 85 -9 -4.13995 | opp_overlap 96254 96268, overlap 96254 96260 CTCTTATAAAGTAAA CTACACCGACTAGTTTACATTTTA AAAG TGAAAAGTAAACTAGTTAGTGTAA AATGAATCGCAGTGG TERM 104 96309 - 96260 - H 80 -10.3 -3.07915 | opp_overlap 96254 96268, overlap 96254 96259 TCTTATAAAGTAAAC TACACCGACTAGTTTACATTTTA AAAG TGAAAAGTAAACTAGTTAGTGTA AAATGAATCGCAGTG TERM 105 96268 - 96301 + H 77 -9.1 -3.27022 | opp_overlap 96254 96260 96259, overlap 96254 AGTAAACTACACCGA CTAGTTTACATTTTA AAAG TGAAAAGTAAACTAG TTAGTGTAAAATGAA TERM 106 96699 - 96711 + G 75 -5.5 -4.77173 | opp_overlap 96699 TAGACTTAGCGAAAG TGGCC TTT GGTCA TTTCTTTTATAAACC VF_A0088 96371 - 96985 + | transcriptional regulator TERM 107 97431 - 97421 - g 81 -5.4 -5.01497 | ATGATGATAGAAAAA GTCT AGA AGAC ACATCAGGTGAGCTT VF_A0089 97108 - 98079 + | hydrolase/lipase VF_A0090 99218 - 98085 - | astacin-like metalloendopeptidase TERM 108 100093 - 100076 - R 90 -8.4 -5.33866 | opp_overlap 100076, overlap 100069 CAAATCTATAAAAAA CCAGCC GGTGGA GGCTGG TTTATTTAAATGATG TERM 109 100076 - 100093 + r 84 -8.4 -4.47183 | opp_overlap 100076 100069 CAAATCTATAAAAAA CCAGCC GGTGGA GGCTGG TTTATTTAAATGATG VF_A0091 101964 - 100117 - | M3 family peptidase TERM 110 100255 - 100274 + g 75 -5.8 -4.7219 | gap 1 AACGTCTGCTTGAGT TCG-AGAGT TTA ACTCTGCGA TTTTATCTTGCTCTA VF_A0092 103668 - 102112 - | methyl-accepting chemotaxis protein, putative aerotaxis receptor TERM 111 103853 - 103867 + H 78 -2.1 -5.64328 | TAATGCTTTAGTGGT CTTGT TTAAT GCAAG TTTTATTTTTTTGTT TERM 112 104341 - 104353 + G 71 -6.3 -4.26202 | AGCGGCAGGCTTTGA TACTG GTG CAGTA TTTGTTGCTACCTGT ygfQ 104153 - 105523 + | transporter TERM 113 105574 - 105555 - T 100 -10 -5.0925 | opp_overlap 105555 GTTTAAAATTAAAAA CGGATGGC ATAA ACCATCCG TTTTTTTATGCGTGG TERM 114 105555 - 105574 + T 100 -9.3 -5.64274 | opp_overlap 105555 GTTTAAAATTAAAAA CGGATGG CATAAA CCATCCG TTTTTTTATGCGTGG ynjF 106210 - 105602 - | phosphatidyl transferase, inner membrane protein TERM 115 106073 - 106059 - G 76 -7.2 -4.23615 | overlap 106062 ACTAGAGCCAACAAA TATTGC TCT GCAATA AGAGCAGGGAAGGCT ynjD 106850 - 106203 - | ABC transporter ATP-binding protein VF_A0096 108525 - 106864 - | ABC transporter permease protein TERM 116 107762 - 107739 - G 74 -5.2 -4.68506 | opp_overlap 107757, overlap 107742 AAGCAATGGCAAAAA GTACAACCGC TCCG GCCGCTGCAC GAGGCAGTAAATTTA ynjB 109688 - 108543 - | hypothetical protein ydjX 110606 - 109929 - | inner membrane protein VF_A0099 111395 - 110622 - | glutamate synthase yeiT 113188 - 111392 - | oxidoreductase VF_A0101 114201 - 113218 - | thiosulfate sulfurtransferase TERM 117 115132 - 115105 - g 73 -7.1 -4.07568 | opp_overlap 115095 115104 TCGCTCCGTTGAAAA TGGTGATATTG ATGTTG CAATAGCACCA GCTTGTACATTAGAA VF_A0102 114614 - 116311 + | two component sensor histidine kinase VF_A0103 116320 - 116937 + | two component response regulator TERM 118 117573 - 117558 - g 70 -9 -3.2396 | opp_overlap 117558 AATGAGCATTATTAA CCCCTT AATG AAGGGG TGTCTACTAAACTAT yraR 117031 - 117705 + | nucleoside-diphosphate-sugar epimerase TERM 119 118386 - 118399 + G 79 -6.7 -4.58283 | opp_overlap 118383 CTTCTTAAAATACCG CCACT TACA AGTGG TTTTTGGCGGGATTG VF_A0105 117784 - 118719 + | transcriptional regulator TERM 120 118722 - 118779 + T 91 -13.2 -3.25378 | gap 1, opp_overlap 118740, overlap 118740 TTTGGTCAAATAACC TCATAGCTC-AATGAAAAAGCCAATGA AATGA TCATTGGCTTTTTTATTAGAGTGGTGA GTTTTCTCAGTAGCT TERM 121 118740 - 118760 + T 100 -9.8 -5.46657 | opp_overlap 118740, overlap 118722 TAGCTCAATGAAAAA GCCAATGA AATGA TCATTGGC TTTTTTATTAGAGTG TERM 122 118760 - 118740 - T 100 -9.8 -4.87291 | opp_overlap 118740 118722 TAGCTCAATGAAAAA GCCAATGA AATGA TCATTGGC TTTTTTATTAGAGTG TERM 123 118808 - 118822 + T 88 -7.2 -5.12707 | opp_overlap 118808 118810 CTATTGGATAAATCA TACACT CGG AGTGTA TTTTTTAGAGTTTCG VF_A0106 121194 - 118786 - | beta-mannosidase TERM 124 120604 - 120622 + g 74 -3.9 -5.02074 | AATTTGTGCAGTTTC GATTGAG CTTAA TTCAATC TTTTTTACAACCTCA TERM 125 121585 - 121597 + H 81 -7.7 -4.29139 | opp_overlap 121584 121585, overlap 121582 TAGTCCAAAATGAAG CAGCA AAG TGCTG TTATTTTGAGTTTAA VF_A0107 121704 - 123524 + | methyl-accepting chemotaxis protein TERM 126 123582 - 123545 - f 95 -8.6 -5.75342 | opp_overlap 123545, overlap 123530 TCCCCCTAAAAAAAA GCCTCTTTCATTTAGT GTGACG ACTAAATTTAAGAGGC TTTTTTGTAAACTCC TERM 127 123545 - 123582 + F 95 -8.6 -5.26316 | opp_overlap 123530 123545 TCCCCCTAAAAAAAA GCCTCTTTCATTTAGT GTGACG ACTAAATTTAAGAGGC TTTTTTGTAAACTCC TERM 128 124004 - 124014 + G 72 -3.2 -5.12068 | overlap 123996 AGCTGATGTCAGTTA TGGC TTC GCTA TTTTTATTCAATCTA VF_A0108 123777 - 124061 + | hypothetical protein VF_A0109 124628 - 124143 - | hypothetical protein ybhG 124820 - 125770 + | membrane fusion protein (MFP) component of efflux pump, membrane anchor ybhF 125775 - 126701 + | ABC transporter ATP-binding protein ybhS 126698 - 127798 + | ABC transporter membrane protein TERM 129 127817 - 127848 + F 79 -4.5 -5.31519 | gap 1, opp_overlap 127817 127818, overlap 127818 GTTAAATAGAGAGAA TGCCCTG-ATTGTT TGAGC ACCAATTCAGGGCG TTTTTATTTCAATCT VF_A1177 128249 - 128371 + | hypothetical protein TERM 130 128388 - 128366 - T 88 -7 -5.18357 | GAATTTAGTAAAAAA GAGTAAGACA CGA TGACTTACCC TAAAAACAAAAAAGA TERM 131 128422 - 128402 - T 100 -9.8 -5.93252 | opp_overlap 128402 CCTAAAAACAAAAAA GAGCACAT TGGTT ATGTGCTC TTTTTTTATTTACAT TERM 132 128402 - 128422 + T 100 -9.8 -5.96894 | opp_overlap 128402 CCTAAAAACAAAAAA GAGCACAT TGGTT ATGTGCTC TTTTTTTATTTACAT VF_A0113 129106 - 128447 - | NAD(P)H-dependent flavin reductase VF_A0114 129325 - 130494 + | methyltransferase VF_A0115 130570 - 131106 + | acetyltransferase TERM 133 131144 - 131177 + F 100 -9.8 -5.15381 | opp_overlap 131144 TATATCGATAAAAAG GGATAATTGTACTT TGTAGT AAGTACGGTTATCC TTTTTTGCGTATATT TERM 134 132178 - 132140 - g 71 -5.3 -4.57569 | gap 1, overlap 132153 CGAGTGGTGGAAAAA GGCAA-GTTATCAACCGC AACA GCGGATCGTAACCTTGCC AGTCACCAATTGGCG yceM 131303 - 132232 + | oxidoreductase VF_A0117 133135 - 132236 - | drug/metabolite exporter family protein TERM 135 133006 - 133020 + g 75 -5.7 -4.77036 | AAATATCACCGGGTA TGGTC ATCAC GACCA TTTTTGATGCTCCCC TERM 136 133171 - 133146 - R 89 -6.9 -5.28778 | ATCATTTATAAAAAA TAACCCCACTC AAAA AAGCAGGGTTA TGTGTAGTTGATTCA VF_A0118 134302 - 133199 - | morphinone reductase VF_A0119 134694 - 134323 - | lactoylglutathione lyase TERM 137 134779 - 134793 + H 85 -4.4 -5.66229 | TGAAATTATGATTTT TTATTA ATT TAATAA TTTTTTGTTATTGGT TERM 138 135784 - 135796 + G 74 -9.1 -3.59262 | TAATTCCAATGATGG GGCAC GTT GTGCC TTTGCCGCTGTAGGA VF_A0120 135014 - 137158 + | putative cytoplasmic protein VF_A0121 137170 - 137643 + | hypothetical protein TERM 139 137655 - 137676 + T 100 -11.6 -5.42514 | opp_overlap 137655 TTAAAGAGACAAAAA TGCCGCAG TGTTAT CTGCGGCA TTTTTTAATTTATAA TERM 140 137676 - 137655 - T 100 -11.6 -5.14985 | opp_overlap 137655 TTAAAGAGACAAAAA TGCCGCAG TGTTAT CTGCGGCA TTTTTTAATTTATAA VF_A0122 138776 - 137700 - | hypothetical protein TERM 141 138892 - 138877 - H 83 -4.8 -5.4387 | opp_overlap 138877 ATATAAAGCAAAAAA CTTAAT CTGT ATTAAG TTCATGTCATATCCG ybgH 139144 - 140610 + | transporter TERM 142 140626 - 140648 + F 86 -10.6 -3.56109 | opp_overlap 140626, overlap 140622 140617 TTCCATTATAAATAA CAGCAAGCTG CCA TGGCTTGCTG TTCCTTATCTCTTTC TERM 143 140648 - 140626 - f 89 -9.2 -4.11183 | opp_overlap 140626 140622 140617 TTCCATTATAAATAA CAGCAAGC TGCCATG GCTTGCTG TTCCTTATCTCTTTC tppB 140955 - 142439 + | putative tripeptide transporter permease VF_A0125 142625 - 142975 + | rhodanese-related sulfurtransferase VF_A0126 143692 - 142985 - | DNA-3-methyladenine glycosylase VF_A0127 143883 - 144368 + | hypothetical protein VF_A0128 144659 - 144928 + | PTS system, IIB component ulaA 144944 - 146200 + | ascorbate-specific PTS system enzyme IIC VF_A0130 146185 - 146646 + | PTS system, 3-keto-L-gulonate specific IIA component TERM 144 146673 - 146691 + F 89 -6.7 -5.63517 | opp_overlap 146673 146668 GTATTTAAATCAAAA CCTCGTT CTTGT AGCGAGG TTTTTTATTTAACAA VF_A0131 146805 - 147632 + | CAAX amino protease VF_A0132 147797 - 148033 + | hypothetical protein TERM 145 148077 - 148034 - T 72 -8.4 -3.37876 | opp_overlap 148033 148035 148036, overlap 148035 AACAACATCGCATAA CGCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGAT ATTTACTCGTTAATG TERM 146 148035 - 148076 + T 90 -11.9 -3.51124 | opp_overlap 148034 148035, overlap 148033 148036 ACAACATCGCATAAC GCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGA TATTTACTCGTTAAT TERM 147 148076 - 148035 - T 84 -11.9 -2.62003 | opp_overlap 148035 148033 148036, overlap 148034 ACAACATCGCATAAC GCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGA TATTTACTCGTTAAT TERM 148 148036 - 148075 + T 100 -15.4 -2.69951 | opp_overlap 148035 148034, overlap 148035 148033 CAACATCGCATAACG CTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAG ATATTTACTCGTTAA VF_A0133 148513 - 148094 - | hypothetical protein TERM 149 148580 - 148590 + r 70 -8.2 -3.24755 | opp_overlap 148573, overlap 148579 GTAAGAAGCACCCTT CGGG CAA CCCG CTTTATTTCGCGAAT VF_A0134 148718 - 148617 - | hypothetical protein VF_A0135 150549 - 148687 - | DNA helicase II TERM 150 149532 - 149542 + gH 81 -8.2 -4.26188 | opp_overlap 149531 149532, overlap 149531 GTCTTTCCCAATAAG GGGC TTC GCCC TTTTGAATATCTAAA VF_A0136 150820 - 151947 + | hypothetical protein VF_A0137 152520 - 151930 - | Type II restriction-modification system methylation subunit VF_A0138 153226 - 152687 - | hypothetical protein VF_A0139 154444 - 153410 - | hypothetical protein TERM 151 154736 - 154723 - H 70 -2.4 -5.35224 | TTTATAAAAATAAAA GAGT AGTACA ACTC AAAAACACTCACAAA TERM 152 154773 - 154760 - H 78 -2.4 -5.69262 | opp_overlap 154760 TCACAAAAATAAAAA TGCA AATATA TGCA TTGTGAGGCTAGGCG VF_A0140 155000 - 155947 + | hypothetical protein TERM 153 156013 - 155975 - T 100 -10.4 -4.31043 | opp_overlap 155980, overlap 155966 155968 155980 ATAGAATATTTAAAA TAAAAGCCTTGGTGGC ATAAGTG GTCACCAAGGCTTTTT TGATATTTATTACAA TERM 154 155980 - 156008 + T 100 -12.5 -5.34055 | opp_overlap 155980 155975 ATATTTAAAATAAAA GCCTTGGTGGC ATAAGTG GTCACCAAGGC TTTTTTGATATTTAT TERM 155 156008 - 155980 - T 100 -10.3 -5.11836 | opp_overlap 155980, overlap 155975 ATATTTAAAATAAAA GCCTTGGTGGC ATAAGTG GTCACCAAGGC TTTTTTGATATTTAT TERM 156 157725 - 157754 + T 93 -9.4 -4.2828 | opp_overlap 157729 GTTGGTTATTTTTAA TTAACGCCACCA GTTAAA TGGTGACGTTAA TTTTACTGAGTAAAG TERM 157 157750 - 157729 - T 72 -8 -3.34895 | opp_overlap 157725 GTTATTTTTAATTAA CGCCACCA GTTAAA TGGTGACG TTAATTTTACTGAGT VF_A0142 160073 - 157776 - | formate acetyltransferase TERM 158 161474 - 161461 - g 73 -6.7 -4.17448 | CAACTAAATGATAAA GGTGA ATTT TCACC TCAATACGGTTCTAA gbpA 160600 - 162078 + | N-acetylglucosamine-binding protein A TERM 159 162149 - 162112 - T 70 -4.2 -4.73105 | opp_overlap 162117 162148, overlap 162115 162117 162131 AGCGATAAAAAATAA TAAGAGAGCCTTCAAT ATATAA AATGAAGGCTCTTTTT ATTTATAGTTTATAT TERM 160 162146 - 162115 - T 72 -5.9 -4.44307 | opp_overlap 162117, overlap 162112 162117 162131 GATAAAAAATAATAA GAGAGCCTTCAAT ATATAA AATGAAGGCTCTT TTTATTTATAGTTTA TERM 161 162144 - 162117 - T 79 -8.5 -3.78069 | opp_overlap 162117, overlap 162115 162112 162131 TAAAAAATAATAAGA GAGCCTTCAAT ATATAA AATGAAGGCTC TTTTTATTTATAGTT TERM 162 162117 - 162144 + T 95 -8.5 -5.4182 | opp_overlap 162115 162112 162117 162131 TAAAAAATAATAAGA GAGCCTTCAAT ATATAA AATGAAGGCTC TTTTTATTTATAGTT hvnB 163132 - 162194 - | halovibrin HvnB TERM 163 163765 - 163750 - g 87 -4.8 -5.38497 | ACTGAAAGCAAAAAA TGAAAT TCGT ATTTCA AGTGTGTTTCGAAAA ygjP 163454 - 163945 + | metal dependent hydrolase VF_A0146 164197 - 163976 - | hypothetical protein VF_A0147 164594 - 164788 + | hypothetical protein TERM 164 164828 - 164845 + T 100 -11.3 -5.61881 | opp_overlap 164828 TTAAATATTTATAGA TGCGCCA GAGC TGGCGCA TTTTTGTTTTTAGCA TERM 165 164845 - 164828 - T 84 -11.3 -2.96638 | opp_overlap 164828 TTAAATATTTATAGA TGCGCCA GAGC TGGCGCA TTTTTGTTTTTAGCA pilA2 165241 - 164855 - | PilA-like type-IV pilus protein TERM 166 165762 - 165772 + G 81 -5.4 -5.02476 | opp_overlap 165760 165762 AGCTAGAAGATGAGA CAGA ACG TCTG TTTTTTCAGCAATCT VF_A0149 165617 - 165817 + | hypothetical protein TERM 167 166543 - 166529 - g 75 -10 -3.09823 | overlap 166531 TTCCTCAAAACCACA CACCAG TAA CTGGTG AAGATGCTGAGAAAT yeeN 165913 - 166635 + | hypothetical protein TERM 168 166691 - 166658 - f 80 -10.5 -3.08314 | gap 1, opp_overlap 166658 166665, overlap 166660 166665 TTTAATTTTCAAAAT GATAAAAGCCGAGC CTATGTT GCTCGGCTTTT-TC TTTTTAATAATGGCT TERM 169 166658 - 166691 + F 100 -10.5 -4.77438 | gap 1, opp_overlap 166658 166660 166665, overlap 166665 TTTAATTTTCAAAAT GATAAAAGCCGAGC CTATGTT GCTCGGCTTTT-TC TTTTTAATAATGGCT TERM 170 166690 - 166660 - f 77 -9.8 -3.09718 | opp_overlap 166658 166665, overlap 166658 166665 TAATTTTCAAAATGA TAAAAGCCGAGC CTATGTT GCTCGGCTTTTT CTTTTTAATAATGGC TERM 171 166665 - 166685 + F 100 -9.7 -5.65496 | opp_overlap 166660 166658 166665, overlap 166658 TTCAAAATGATAAAA GCCGAGC CTATGTT GCTCGGC TTTTTCTTTTTAATA TERM 172 166685 - 166665 - f 100 -9.7 -4.67635 | opp_overlap 166665 166658, overlap 166660 166658 TTCAAAATGATAAAA GCCGAGC CTATGTT GCTCGGC TTTTTCTTTTTAATA rhlE 166790 - 168292 + | RNA helicase TERM 173 168350 - 168316 - f 100 -9.4 -5.08824 | opp_overlap 168325 168348, overlap 168317 168320 168325 TGCTTATGTAAAAAA GTAATAAAACCGGCAA TTT TCGCCGGTTTTTTTAT AAGCTATATATCTCC TERM 174 168349 - 168317 - f 95 -12.9 -3.64812 | opp_overlap 168325 168348, overlap 168316 168320 168325 GCTTATGTAAAAAAG TAATAAAACCGGCAA TTT TCGCCGGTTTTTTTA TAAGCTATATATCTC TERM 175 168346 - 168320 - f 93 -10.2 -3.94773 | opp_overlap 168325, overlap 168317 168316 168325 TATGTAAAAAAGTAA TAAAACCGGCAA TTT TCGCCGGTTTTT TTATAAGCTATATAT TERM 176 168341 - 168325 - f 100 -10.1 -4.95211 | opp_overlap 168325, overlap 168320 168317 168316 AAAAAAGTAATAAAA CCGGCAA TTT TCGCCGG TTTTTTTATAAGCTA TERM 177 168325 - 168341 + F 93 -7.9 -5.626 | opp_overlap 168320 168317 168316 168325 AAAAAAGTAATAAAA CCGGCAA TTT TCGCCGG TTTTTTTATAAGCTA VF_A0152 168529 - 169980 + | GGDEF domain-containing protein TERM 178 170024 - 170003 - f 79 -8.8 -3.79787 | opp_overlap 170003 CCACATTAATCCAAA TCCAGTGA GATATT TCACTGGA TTTTTCATTAGAAAA TERM 179 170003 - 170024 + F 100 -9.5 -4.8622 | opp_overlap 170003 CCACATTAATCCAAA TCCAGTGAG ATAT TTCACTGGA TTTTTCATTAGAAAA emrD 170231 - 171433 + | multidrug resistance protein D TERM 180 171469 - 171495 + T 100 -17.4 -5.40464 | opp_overlap 171469, overlap 171492 171494 ATTTGATAAAAGAAA GGCCGAGTAGGT AAT ATCTACTCGGCC TTTTTATTTATAATG TERM 181 171495 - 171469 - T 100 -15.2 -4.77775 | opp_overlap 171469 171492 171494 ATTTGATAAAAGAAA GGCCGAGTAGGT AAT ATCTACTCGGCC TTTTTATTTATAATG dbpA 172928 - 171540 - | ATP-dependent RNA helicase DbpA VF_A0155 173231 - 174679 + | GGDEF domain-containing protein VF_A0156 174758 - 175489 + | hypothetical protein VF_A0157 176710 - 175505 - | permease fhuC 176797 - 177612 + | iron-hydroxamate transporter subunit fhuD 177651 - 178544 + | iron-hydroxamate transporter subunit TERM 182 178969 - 178988 + G 78 -4.2 -5.20333 | CATTTTTAGGCGGAG CATTTGCC ACCG GGCTAGTG TTTTTATTGTCGGTA TERM 183 179045 - 179055 + G 87 -3.2 -5.85178 | GGTGCTAGCTGGAAT GGTT GTT AGCC TTTTTTTTGGGTCTT fhuB 178557 - 180560 + | iron-hydroxamate transporter permease subunit iucA 180709 - 182484 + | aerobactin siderophore biosynthesis protein IucA iucB 182477 - 183388 + | aerobactin siderophore synthesis protein IucB iucC 183388 - 185148 + | aerobactin siderophore biosynthesis protein IucC TERM 184 185519 - 185538 + G 73 -9.4 -3.20349 | opp_overlap 185519, overlap 185517 185512 TTAAGTAATGTGAAA TTCTCAAC CCAT GTTGAGAA TGTTGAATTTAACGG TERM 185 185538 - 185519 - g 79 -9.4 -3.69434 | opp_overlap 185519 185517 185512 TTAAGTAATGTGAAA TTCTCAAC CCAT GTTGAGAA TGTTGAATTTAACGG iucD 185177 - 186475 + | aerobactin siderophore biosynthesis protein IucD iutA 186579 - 188753 + | ferric aerobactin receptor precursor IutA TERM 186 188809 - 188775 - f 100 -10.2 -4.86731 | opp_overlap 188779, overlap 188779 188782 CTTTTGTAAATAAAA TTAATAAGGCTATCTT TAT AAGATAGCCTTATTTT TTCTTAATAACTGCC TERM 187 188779 - 188805 + F 100 -15.4 -5.5112 | opp_overlap 188775 188779 188782 TGTAAATAAAATTAA TAAGGCTATCTT TAT AAGATAGCCTTA TTTTTTCTTAATAAC TERM 188 188805 - 188779 - f 100 -15.4 -3.88331 | opp_overlap 188779, overlap 188775 188782 TGTAAATAAAATTAA TAAGGCTATCTT TAT AAGATAGCCTTA TTTTTTCTTAATAAC TERM 189 188802 - 188782 - f 100 -12.7 -4.03546 | opp_overlap 188779, overlap 188779 188775 AAATAAAATTAATAA GGCTATCTT TAT AAGATAGCC TTATTTTTTCTTAAT qmcA 188936 - 189859 + | protease, membrane anchored TERM 190 190039 - 190049 + G 76 -3.2 -5.18561 | GCAAATGCAGTGGAT CAGT TTT GCTG TTTTTTCACTCTTTA VF_A0167 189869 - 190321 + | hypothetical protein TERM 191 190341 - 190380 + F 93 -8.1 -5.52909 | overlap 190332 ACATGTTCATTTAAA GTGGATGATTTGTTGTA TTTAAC TGCAATGAATCATTCAC TTTTTTTACATGTTC VF_A0168 190558 - 191808 + | methyl-accepting chemotaxis protein VF_A0169 192233 - 193864 + | methyl-accepting chemotaxis protein TERM 192 193890 - 193909 + F 100 -12.2 -5.64274 | opp_overlap 193890 AATTTAAAGAATAAA GTGATGGC AAAT GCCATCAC TTTTTTTATAAGTCC TERM 193 193909 - 193890 - f 100 -12.2 -4.59489 | opp_overlap 193890 AATTTAAAGAATAAA GTGATGGC AAAT GCCATCAC TTTTTTTATAAGTCC TERM 194 194025 - 194042 + F 86 -2.7 -5.83226 | overlap 194026 TGACCTTTGAGCCAT AGTGAAA GTAT TTTCACA TTTTTTTATTGAATT VF_A0170 194325 - 195950 + | methyl-accepting chemotaxis protein TERM 195 196020 - 195991 - T 83 -10.9 -2.97475 | opp_overlap 195997, overlap 195997 GTGTGTACTAGAAAT TAAAAAGGAGATC ATAT GATCTCCTTTTTT GTACAACAAAGAATG TERM 196 195997 - 196014 + T 100 -9.9 -5.24129 | opp_overlap 195991 195997 ACTAGAAATTAAAAA GGAGATC ATAT GATCTCC TTTTTTGTACAACAA TERM 197 196014 - 195997 - T 100 -9.9 -5.05505 | opp_overlap 195997, overlap 195991 ACTAGAAATTAAAAA GGAGATC ATAT GATCTCC TTTTTTGTACAACAA TERM 198 196062 - 196034 - T 72 -6.1 -4.27512 | overlap 196037 TTGTACAACAAAGAA TGATAGAAAAGCA TAT TACCTTTCTAGCA AGCACAACGATAAAC VF_A0171 196240 - 196139 - | hypothetical protein VF_A0172 196299 - 196553 + | hypothetical protein TERM 199 196588 - 196565 - T 86 -8.2 -4.68103 | opp_overlap 196565 TTAATCCTAAGAAAA TGAGTAGCTT ATAG ATGCTACTCA TTTATGTATGATTAA TERM 200 196565 - 196588 + T 81 -8.2 -4.17417 | opp_overlap 196565 TTAATCCTAAGAAAA TGAGTAGCTT ATAG ATGCTACTCA TTTATGTATGATTAA VF_A0173 197499 - 196618 - | 3-hydroxyisobutyrate dehydrogenase VF_A0174 198174 - 197650 - | hypothetical protein TERM 201 198323 - 198354 + r 79 -4.4 -5.25699 | opp_overlap 198326, overlap 198324 198326 TGTAATCAAAGATAA AAAGCCATATCAAG AGGA CCTGATATGGCTGA TTTTTATTATGTAAT TERM 202 198324 - 198353 + r 73 -7.9 -3.73793 | opp_overlap 198326, overlap 198323 198326 GTAATCAAAGATAAA AAGCCATATCAAG AGGA CCTGATATGGCTG ATTTTTATTATGTAA TERM 203 198326 - 198351 + r 85 -10.5 -3.43245 | opp_overlap 198326, overlap 198324 198323 AATCAAAGATAAAAA GCCATATCAAG AGGA CCTGATATGGC TGATTTTTATTATGT TERM 204 198351 - 198326 - R 100 -12.7 -5.23644 | opp_overlap 198326 198324 198323 AATCAAAGATAAAAA GCCATATCAAG AGGA CCTGATATGGC TGATTTTTATTATGT VF_A0175 199311 - 198391 - | hypothetical protein VF_A0176 199419 - 199730 + | ArsR family transcriptional regulator ogt 199754 - 200227 + | O-6-alkylguanine-DNA:cysteine-protein methyltransferase cusS 201585 - 200245 - | sensory histidine kinase in two-component regulatory system with CusR, senses copper ions cusR 202270 - 201590 - | DNA-binding response regulator in two-component regulatory system with CusS TERM 205 202003 - 201965 - G 71 -6.3 -4.23781 | gap 1, opp_overlap 201965, overlap 201960 TTCAGCAAAAGCAAA GGGTTT-AATTAGGTA ATCATTTG CACCTAATTCAAACCC TTTCACTCTATCATC VF_A0180 202799 - 202374 - | hypothetical protein VF_A0181 202949 - 203614 + | transcriptional regulator SyrB TERM 206 204717 - 204696 - g 82 -8.1 -4.58395 | TCGAGTGGTTAAAAA CTTAATCAC CAAT GCGATTAAG TACGCTGGCGATAAT VF_A0182 203620 - 205008 + | two component sensor histidine kinase TERM 207 205028 - 205076 + F 85 -12.1 -3.12449 | opp_overlap 205038, overlap 205038 CAATAACTTTAGTGT TAATAATAAAGGCTAATTCTATA AAA TTTAGGATTAGCCTTTTTTGTTA TATATATTCATAAAA TERM 208 205066 - 205038 - f 81 -7.5 -4.45068 | opp_overlap 205028 205038 AGTGTTAATAATAAA GGCTAATTCTATA AAA TTTAGGATTAGCC TTTTTTGTTATATAT TERM 209 205038 - 205066 + F 100 -9.7 -5.62045 | opp_overlap 205038, overlap 205028 AGTGTTAATAATAAA GGCTAATTCTATA AAA TTTAGGATTAGCC TTTTTTGTTATATAT VF_A0183 205244 - 206275 + | hypothetical protein VF_A0184 206285 - 206827 + | hypothetical protein VF_A0185 206812 - 208551 + | hypothetical protein motA2 208548 - 209330 + | flagellar motor protein MotA2 TERM 210 209949 - 209922 - g 72 -8.6 -3.52896 | gap 1, opp_overlap 209922 209925 209928, overlap 209925 GCATTACCGATAGAA CAACAGCGTCAAT TAA ATCGACG-TGTTG TGATTTATATTAAAA motB2 209331 - 209972 + | flagellar motor protein MotB2 TERM 211 210032 - 210003 - T 81 -7.9 -4.42806 | opp_overlap 210008, overlap 210008 CTAGCTGTAAATAAA GCAAAGCGCTCTA AATA TAGAGCGCTTTTT TTATAAGAAATGAAT TERM 212 210008 - 210027 + T 100 -12.2 -5.60993 | opp_overlap 210003 210008 TGTAAATAAAGCAAA GCGCTCTA AATA TAGAGCGC TTTTTTTATAAGAAA TERM 213 210027 - 210008 - T 100 -12.2 -4.27211 | opp_overlap 210008, overlap 210003 TGTAAATAAAGCAAA GCGCTCTA AATA TAGAGCGC TTTTTTTATAAGAAA torZ 212531 - 210078 - | TMAO reductase III (TorYZ), TorZ subunit TERM 214 210596 - 210610 + g 76 -7.2 -4.15106 | AGCCTTCGATGGTTT TTGAGA AGA TCTCAA TTTTACCACTTGGTG torY 213635 - 212544 - | TMAO reductase III (TorYZ), cytochrome c-type subunit VF_A0190 213864 - 213769 - | hypothetical protein VF_A0191 214002 - 216104 + | FhuE receptor precursor TERM 215 216144 - 216121 - f 79 -5.2 -5.08601 | opp_overlap 216124, overlap 216124 TTATTGTAATAAAAA TAAGGGAGGC CTCG GTCTCCCTTT AGTGCGTTTATTTGA TERM 216 216141 - 216124 - f 80 -6.9 -4.63592 | opp_overlap 216124, overlap 216121 TTGTAATAAAAATAA GGGAGGC CTCG GTCTCCC TTTAGTGCGTTTATT TERM 217 216124 - 216141 + F 81 -9.1 -3.83771 | opp_overlap 216124 216121 TTGTAATAAAAATAA GGGAGGC CTCG GTCTCCC TTTAGTGCGTTTATT VF_A0192 216215 - 216982 + | hypothetical protein TERM 218 217959 - 217947 - g 70 -3.4 -4.88736 | TACGATGCAGAAAAA CAAC GTTCA GTTG AAGCATTAGAATTAC VF_A0193 216984 - 218339 + | TolQ protein VF_A0194 218339 - 218848 + | TolQ protein VF_A0195 218845 - 219249 + | TolR protein VF_A0196 219249 - 219869 + | TonB protein VF_A0197 219866 - 221047 + | TPR domain-containing protein TERM 219 221080 - 221064 - T 100 -12.3 -5.4833 | opp_overlap 221064 CTACTTAATAAAAAA GCAGCGT TCA ACGCTGC TTTTTTATTGTTACC TERM 220 221064 - 221080 + T 100 -12.3 -5.64873 | opp_overlap 221064 CTACTTAATAAAAAA GCAGCGT TCA ACGCTGC TTTTTTATTGTTACC VF_A0198 221590 - 221111 - | transcriptional repressor VF_A0199 222522 - 221590 - | chitooligosaccharide transport ATP-binding protein oppD VF_A0200 223385 - 222519 - | chitooligosaccharide transport ATP-binding protein oppF VF_A0201 223683 - 224819 + | hypothetical protein TERM 221 224838 - 224867 + T 93 -10.2 -4.04806 | opp_overlap 224836 224838 CTTACTTTAATAAGA GTGACTTAAAGG CTTAGT TCTTTAAGTCAC TTATTTAATATCCAA TERM 222 224867 - 224838 - T 79 -9.5 -3.40611 | opp_overlap 224838, overlap 224836 CTTACTTTAATAAGA GTGACTTAAAG GCTTAGTT CTTTAAGTCAC TTATTTAATATCCAA VF_A0202 225270 - 224872 - | hypothetical protein TERM 223 224992 - 224975 - G 77 -7.7 -4.14739 | CGACTGATTCCAAAA CGCTCAA ATAG CTGAGCG CAATATTTTATGTTC VF_A0203 225569 - 225721 + | hypothetical protein TERM 224 225735 - 225763 + T 93 -3.3 -5.95946 | opp_overlap 225735 AAATTTTAAGTAAAA GCTAATTGA ATCTCCCCCTA TCAATTAGC TTTTTTTGTTATTCG VF_A0204 226410 - 225772 - | hypothetical protein TERM 225 226115 - 226093 - G 80 -7.8 -4.3208 | TGGCACAAGCCAAAA TCCATGATAA ACC TTATCAAGGA CACCATCGCATTCTC yeiH 227506 - 226529 - | inner membrane protein TERM 226 226712 - 226696 - G 71 -3.7 -4.84527 | overlap 226698 226699 TCGATACATCAAAAA TACCGTT ATA AACGACA TCAAATTGTGGCAGG TERM 227 228375 - 228399 + G 74 -4.3 -4.83615 | opp_overlap 228379, overlap 228379 TGAAATCTTATTATC TAAAGCGACAT CTG ATGTCACTTCA TTTTTATCGACAGTC ydeE 227737 - 228987 + | transporter VF_A0207 229964 - 229014 - | hypothetical protein VF_A0208 231212 - 230046 - | arylsulfatase regulator (Fe-S oxidoreductase) VF_A0209 231374 - 232774 + | phosphatidylserine decarboxylase eptA 232903 - 234531 + | metal dependent hydrolase TERM 228 234559 - 234586 + F 100 -12.2 -5.35721 | opp_overlap 234559 TACATAGAAGAGAAA TAGGCTAATCAT GAGA ATGGTTAGCCTA TTTTTGTTATTATCT TERM 229 234586 - 234559 - f 100 -10 -4.3277 | opp_overlap 234559 TACATAGAAGAGAAA TAGGCTAATCAT GAGA ATGGTTAGCCTA TTTTTGTTATTATCT VF_A0211 234631 - 235317 + | transcriptional regulator VF_A0212 235305 - 236729 + | two component sensor histidine kinase TERM 230 236742 - 236776 + T 100 -18.9 -3.37522 | opp_overlap 236742 236749, overlap 236749 TAAGTTAAAATGAAA TATAAAAGAGGAGCG ATGAA CGCTCCTCTTTTATA TTGATTGGCTAGAGT TERM 231 236776 - 236742 - T 100 -18.9 -4.23528 | opp_overlap 236742 236749, overlap 236749 TAAGTTAAAATGAAA TATAAAAGAGGAGCG ATGAA CGCTCCTCTTTTATA TTGATTGGCTAGAGT TERM 232 236769 - 236749 - T 100 -12.6 -4.85894 | opp_overlap 236742 236749, overlap 236742 AAATGAAATATAAAA GAGGAGCG ATGAA CGCTCCTC TTTTATATTGATTGG TERM 233 236749 - 236769 + T 100 -12.6 -4.73864 | opp_overlap 236749 236742, overlap 236742 AAATGAAATATAAAA GAGGAGCG ATGAA CGCTCCTC TTTTATATTGATTGG VF_A0213 238337 - 236799 - | sulfatase family protein VF_A1178 238623 - 238234 - | hypothetical protein VF_A0214 239644 - 238736 - | transcriptional regulator SyrB VF_A0215 240121 - 241011 + | hypothetical protein TERM 234 241546 - 241531 - gf 72 -4.7 -4.77757 | TTGGAAAAATCAAAA GGCAA GTGCTG TTGCC GAAAGTGTGTTTCTA VF_A0216 241001 - 242149 + | two component response regulator VF_A0217 242118 - 242438 + | hypothetical protein TERM 235 242470 - 242441 - f 89 -9.5 -4.13945 | opp_overlap 242447, overlap 242447 ATTTTTAGCCTAAAA TAAAAAGCATAGT TTCG ACTATGCTTTTTT TTGTTTCTAAAGAAA TERM 236 242447 - 242464 + F 100 -8.5 -6.28967 | opp_overlap 242441 242447 AGCCTAAAATAAAAA GCATAGT TTCG ACTATGC TTTTTTTTGTTTCTA TERM 237 242464 - 242447 - f 95 -8.5 -5.46706 | opp_overlap 242447, overlap 242441 AGCCTAAAATAAAAA GCATAGT TTCG ACTATGC TTTTTTTTGTTTCTA flp2 242789 - 243007 + | fimbrial protein precursor Flp1 TERM 238 243036 - 243061 + G 80 -11.3 -2.79983 | opp_overlap 243036 243033 243038, overlap 243033 243031 243029 243038 GTAATAATTCAATTA TATGGTGGACA TTTT TGTTCACCATA TCGTGTATTATATGC TERM 239 243038 - 243059 + G 72 -9.5 -2.94034 | opp_overlap 243038 243036 243033, overlap 243036 243033 243031 243029 AATAATTCAATTATA TGGTGGACA TTTT TGTTCACCA TATCGTGTATTATAT VF_A1179 243017 - 243451 + | hypothetical protein VF_A0219 243460 - 244245 + | tungstate-binding protein precursor VF_A0220 244256 - 245578 + | general secretion pathway protein D VF_A0221 245575 - 246111 + | putative lipoprotein VF_A0222 246113 - 247330 + | ATPase involved in chromosome partitioning tadA2 247333 - 248619 + | putative type IV secretion NTPase tadB2 248616 - 249539 + | TadB-like protein involved in pilus formation and/or protein secretion tadC2 249509 - 250420 + | bipartite nuclear localization signal containing protein tadD2 250410 - 251153 + | TPR repeat-containing protein tadE2 251158 - 251646 + | TadE-like protein tadF2 251630 - 252169 + | ATP/GTP-binding motif-containing protein TERM 240 252923 - 252912 - g 79 -5.8 -4.95618 | opp_overlap 252912, overlap 252920 AATAGTAAAAATAAA CCAG GGAA CTGG TTTCGACCTGTCAAA tadG2 252171 - 253442 + | TadG-like protein VF_A0230 253482 - 254243 + | outer membrane protein TERM 241 254274 - 254328 + F 100 -11.2 -4.17186 | TTTTTTGGTTCAGAA TAGAGTAATAATGAAATTTTAGAATG TCA TATTCTATAGTTTTATTGTTGCTCTA TTCTGTTTTGTTTTA TERM 242 254420 - 254459 + GF 88 -7.4 -4.86861 | GCTGACAGATAATAT GAGTTTGAATGTGTATTT AACA AAATATGAATTCAAGCTC TTTATTTGTTTGTTA TERM 243 254459 - 254505 + GF 74 -6 -4.4078 | ATATGAATTCAAGCT CTTTATTTGTTTGTTAAACTCT CCA GGTGTTAATCAAACAAATGAGG TTTTAATTAACACAA VF_A0231 254364 - 254999 + | hypothetical protein VF_A0232 254953 - 255414 + | hypothetical protein TERM 244 255424 - 255397 - T 91 -5.6 -5.79588 | opp_overlap 255402 255417, overlap 255402 TTAAAACGAAAAAAA GAAAATAGGCTC AAGT GAGCCTATTTAA AAATAGTGGTTATTA TERM 245 255419 - 255402 - T 100 -9.9 -5.57888 | opp_overlap 255402 255417, overlap 255397 ACGAAAAAAAGAAAA TAGGCTC AAGT GAGCCTA TTTAAAAATAGTGGT TERM 246 255402 - 255419 + T 82 -9.9 -3.58522 | opp_overlap 255402 255397, overlap 255417 ACGAAAAAAAGAAAA TAGGCTC AAGT GAGCCTA TTTAAAAATAGTGGT VF_A0233 257627 - 255417 - | hypothetical protein TERM 247 255442 - 255452 + g 79 -5.4 -4.88163 | ATAGTGGTTATTATT GAGT CTA ACTC TTTGTTTTCTATTGG TERM 248 256952 - 256972 + g 76 -2 -5.38958 | gap 1, opp_overlap 256957, overlap 256957 CGGGTTGAATTGCAA TAATATGGT CTTC ACCAT-TTA TTTTTATTTCTGAAT TERM 249 256957 - 256968 + g 76 -4.4 -5.1502 | opp_overlap 256957, overlap 256952 TGAATTGCAATAATA TGGT CTTC ACCA TTTATTTTTATTTCT TERM 250 257498 - 257512 + g 70 -2.8 -5.03201 | AGTACTTATTTTCTG CATTTG TAG CAATTG TTTTTACTTCTTCTT VF_A0234 258041 - 257646 - | hypothetical protein TERM 251 258483 - 258499 + G 73 -2.2 -5.21709 | TTGCAGAGTTCATTG GAACAG GGTTA CTGATC TTTTTTGGTGTGGGC glpF 258428 - 259282 + | glycerol uptake facilitator protein GlpF glpK 259348 - 260862 + | glycerol kinase TERM 252 260919 - 260889 - T 84 -11.3 -3.00525 | opp_overlap 260894, overlap 260894 TGCTGTTAAATTATA CAAAAGGAGCACA TATAT TGTGCTCCTTTTT TTATGACGAAGTTTA TERM 253 260914 - 260894 - T 100 -11.2 -4.6468 | opp_overlap 260894, overlap 260889 TTAAATTATACAAAA GGAGCACA TATAT TGTGCTCC TTTTTTTATGACGAA TERM 254 260894 - 260914 + T 100 -11.2 -5.60993 | opp_overlap 260894 260889 TTAAATTATACAAAA GGAGCACA TATAT TGTGCTCC TTTTTTTATGACGAA rscS 263715 - 260932 - | hybrid sensor kinase RscS TERM 255 263332 - 263346 + g 81 -7.2 -4.56914 | AATAGTGTGGATTGT GTATTC TTT GAATAC TTTTAGTTTAAGTAA TERM 256 263497 - 263482 - G 70 -2.6 -5.01497 | gap 1 ACGATTATACAAAAA TGAAGCT TGC AGCT-CA CTATCAACGAGTAGC TERM 257 264132 - 264146 + H 72 -2.8 -5.3236 | overlap 264133 ATTTGTATAAGATCT ACTCTA ATT TAGAGA TTTTTTATCAATTGT TERM 258 265058 - 265034 - g 73 -7.3 -3.96506 | GATTTTAAAAGATAA TGAAATTCCTT ATG AAGTAATTTCA AAGTAGCTCTCATTT glpR 264297 - 265064 + | glycerol-3-phosphate regulon repressor protein GlpR TERM 259 265121 - 265082 - f 70 -8 -3.14931 | opp_overlap 265089, overlap 265086 265089 CTCATTTCTGACGAA TAAACGATCCCTGTTCTT GATT AAGATCAGGGATTTTTTA TATCTGCATCACACT TERM 260 265114 - 265089 - f 80 -10.5 -3.12942 | opp_overlap 265089, overlap 265086 265082 CTGACGAATAAACGA TCCCTGTTCTT GATT AAGATCAGGGA TTTTTTATATCTGCA TERM 261 265089 - 265114 + F 100 -10.5 -5.4251 | opp_overlap 265089 265086 265082 CTGACGAATAAACGA TCCCTGTTCTT GATT AAGATCAGGGA TTTTTTATATCTGCA TERM 262 265558 - 265584 + G 100 -13 -4.55798 | overlap 265560 ATCGTCCATTTTTAC GCCCAGCATGGA TGA TCCGTGCTGGTC TTTTCCTTTACGATA TERM 263 265560 - 265582 + G 100 -14.2 -3.88396 | overlap 265558 CGTCCATTTTTACGC CCAGCATGGA TGA TCCGTGCTGG TCTTTTCCTTTACGA glpD 265242 - 266789 + | glycerol-3-phosphate dehydrogenase TERM 264 266813 - 266796 - T 100 -11.3 -4.18042 | opp_overlap 266796 GTGATATAAACGAAA GCAGCCA CGAT TGGCTGC TTTTTTTATGTATGC TERM 265 266796 - 266813 + T 100 -11.3 -5.76633 | opp_overlap 266796 GTGATATAAACGAAA GCAGCCA CGAT TGGCTGC TTTTTTTATGTATGC VF_A0240 267940 - 266819 - | SUA5 protein VF_A0241 268451 - 269539 + | choloylglycine hydrolase TERM 266 269579 - 269555 - T 89 -7.3 -5.33405 | opp_overlap 269555 TTTATTAAATAAAAA TAAGCTTCA TGCTGGG TGAAGCTTA TTTTTCTTCGACTTC TERM 267 269555 - 269579 + T 90 -8 -5.10208 | opp_overlap 269555 TTTATTAAATAAAAA TAAGCTTCAT GCTGG GTGAAGCTTA TTTTTCTTCGACTTC VF_A0244 271267 - 269561 - | GGDEF/EAL domain-containing protein TERM 268 270381 - 270358 - G 80 -8.2 -4.40561 | opp_overlap 270378 TTGTTGTAAAAAGAA TTGATGGGCT TTTA ATCCCATCAA GCAATTCTTGATACT TERM 269 270779 - 270767 - G 79 -3.4 -5.42198 | opp_overlap 270774, overlap 270770 270774 GCGTAAAAAACAAAA TGAC AAATA GTCA TCACTAATTGTACTA VF_A0245 271588 - 271758 + | hypothetical protein VF_A0246 271886 - 273751 + | methyl-accepting chemotaxis protein TERM 270 273760 - 273794 + T 85 -10.2 -3.51934 | opp_overlap 273764, overlap 273757 273764 TGTATAAAGGGTAAT TCAATAGGCTGTATTT ATG AAATACAGCCTATTAC TATTTATAGCAAAAA TERM 271 273790 - 273764 - T 100 -15.4 -3.1996 | opp_overlap 273760 273757 273764 TAAAGGGTAATTCAA TAGGCTGTATTT ATG AAATACAGCCTA TTACTATTTATAGCA TERM 272 273764 - 273790 + T 100 -15.4 -3.50335 | opp_overlap 273764, overlap 273760 273757 TAAAGGGTAATTCAA TAGGCTGTATTT ATG AAATACAGCCTA TTACTATTTATAGCA VF_A0247 274957 - 273794 - | SUA5 protein TERM 273 274027 - 274039 + g 75 -2.7 -5.24799 | TGTAATGTGTAATAG GTTGA TTT TTAAC TTTTTCTGTTTCTAC glpC 276506 - 275235 - | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 274 276345 - 276360 + g 85 -6.8 -5.14626 | TCCGCATTGTTTTGG CCCTGG ATAA TCAGGG TTTTCTTTTGCTACT glpB 277870 - 276503 - | anaerobic glycerol-3-phosphate dehydrogenase subunit B TERM 275 277044 - 277056 + g 70 -5.5 -4.31433 | opp_overlap 277044 CCTAGCTCAATAAAG GCGTG TTT CATGC TTTCTTCTAAGCGTA glpA 279519 - 277867 - | sn-glycerol-3-phosphate dehydrogenase subunit A TERM 276 278310 - 278324 + g 85 -2.8 -5.78622 | overlap 278311 278312 TTTGGTAAACCGGTT TTGCAA TAC TTGCGG TTTTTTTTGCGGTAA TERM 277 278376 - 278388 + g 70 -7.7 -3.78419 | opp_overlap 278375, overlap 278382 GTAGTGGACGAATAT GAGTG GTA CACTC TTGTGTATTTCCTAG TERM 278 279763 - 279747 - H 73 -9.5 -2.80821 | overlap 279744 TTTGTAAAGATACGA TCTGGTT CAA AACCAGA CTAAAAGTGGTGATA fdhF 279815 - 283978 + | formate dehydrogenase-H TERM 279 284036 - 283998 - T 100 -16.3 -4.36127 | opp_overlap 284003, overlap 284003 TGTAATAACGTAAAA TAAAATGCCCGATGATT TGAGT AATCATCGGGCATTTTT TATGTTTAGAAGTAG TERM 280 284003 - 284031 + T 100 -16.2 -5.56264 | opp_overlap 283998 284003 TAACGTAAAATAAAA TGCCCGATGATT TGAGT AATCATCGGGCA TTTTTTATGTTTAGA TERM 281 284031 - 284003 - T 100 -16.2 -5.13343 | opp_overlap 284003, overlap 283998 TAACGTAAAATAAAA TGCCCGATGATT TGAGT AATCATCGGGCA TTTTTTATGTTTAGA pepT 285290 - 284061 - | peptidase T VF_A0254 285805 - 285425 - | putative lipoprotein TERM 282 286037 - 286070 + H 89 -10.7 -3.58208 | opp_overlap 286042, overlap 286040 CTAGATGTTGCGTGT TAAGATAAAAGTAAA TTAA TTTATTTTTATCTTA TTGATTATTATCCAA TERM 283 286040 - 286067 + H 79 -8 -3.91564 | opp_overlap 286042, overlap 286037 GATGTTGCGTGTTAA GATAAAAGTAAA TTAA TTTATTTTTATC TTATTGATTATTATC yeaM 286358 - 287146 + | DNA-binding transcriptional regulator VF_A0256 287408 - 287782 + | hypothetical protein TERM 284 287873 - 287847 - T 82 -8.8 -4.08394 | opp_overlap 287836 287849, overlap 287849 ATACGGTTGGTAAAA CAGCCATTTCCA ATG TGAAAATGGCTT TTCATTAAAGACTAA TERM 285 287871 - 287849 - T 90 -11.4 -3.63922 | opp_overlap 287836 287849, overlap 287847 ACGGTTGGTAAAACA GCCATTTCCA ATG TGAAAATGGC TTTTCATTAAAGACT TERM 286 287849 - 287871 + T 93 -9.2 -4.41047 | opp_overlap 287847 287849, overlap 287836 ACGGTTGGTAAAACA GCCATTTCCA ATG TGAAAATGGC TTTTCATTAAAGACT VF_A0257 288489 - 287878 - | malate synthase TERM 287 288907 - 288917 + G 89 -5.4 -5.42198 | overlap 288902 ATTAGTGGAATGGTT CTTG AAC CAAG TTTTCTTTTTTCCAA VF_A0258 288598 - 290100 + | MerR family transcriptional regulator TERM 288 290101 - 290128 + T 79 -5.7 -5.10154 | opp_overlap 290101 ACTTGCTATAAATAA TAGCCGTTA CTGATTGATT TAACGGCTA TTTTTAATTTTAGCT VF_A0259 291238 - 290138 - | transcriptional regulator VF_A0260 293584 - 291668 - | glutathione-regulated potassium-efflux system protein KefC TERM 289 293463 - 293449 - G 72 -8.6 -3.61398 | opp_overlap 293451 TTTCTTCGCCAACAA GACCAA TGA TTGGTC CTATAACCACCCCTG VF_A0261 294209 - 293592 - | modulator of glutathione-dependent potassium efflux system VF_A0262 294654 - 294325 - | quaternary ammonium compound-resistance protein TERM 290 294779 - 294809 + r 74 -6.2 -4.57341 | opp_overlap 294779, overlap 294780 294782 GTGGATTGAAGAGGA GTCGGCTCAATATT AAT GATATTGAGCCTAA TTTTTAGAAGAAGTT TERM 291 294780 - 294808 + r 81 -9.7 -3.33922 | opp_overlap 294779, overlap 294779 294782 TGGATTGAAGAGGAG TCGGCTCAATATT AAT GATATTGAGCCTA ATTTTTAGAAGAAGT TERM 292 294782 - 294806 + r 91 -12.3 -3.23708 | opp_overlap 294779, overlap 294780 294779 GATTGAAGAGGAGTC GGCTCAATATT AAT GATATTGAGCC TAATTTTTAGAAGAA VF_A0263 295220 - 294813 - | hypothetical protein TERM 293 294845 - 294872 + g 100 -6.4 -5.84011 | AGCGACGACCACTCT CAGGATCAAC GGTGGTTG GTTGATCTTG TTTTTGTTTTTTCTT TERM 294 295319 - 295340 + r 86 -8 -4.65747 | opp_overlap 295319 TTAGTAAAGTAAAAA CGGTGCTG TATTAT TAGCACCG TTTTATTAAGAGTTA TERM 295 295340 - 295319 - R 88 -7.3 -5.01811 | opp_overlap 295319 TTAGTAAAGTAAAAA CGGTGCT GTATTATT AGCACCG TTTTATTAAGAGTTA ycbX 296564 - 295353 - | 2Fe-2S cluster-containing protein TERM 296 295610 - 295622 + g 85 -5.5 -5.35354 | TGATAGTGATTTCTT CTGGA GTA TCCGG TTTTTTACTTGTGTG VF_A0265 297832 - 296576 - | two component sensor histidine kinase VF_A0266 298472 - 297807 - | transcriptional regulator VF_A0267 298554 - 299438 + | hypothetical protein TERM 297 299451 - 299488 + F 100 -11.5 -4.88736 | opp_overlap 299453 299458, overlap 299458 TAATTTGTGAAAATA TAGAAAACCACTGGCTT TCAT GAGTCAGTGGTTTTTTG TTTTTATGGGTAATA TERM 298 299458 - 299481 + F 100 -9.6 -5.98675 | opp_overlap 299453 299458, overlap 299451 TGAAAATATAGAAAA CCACTGGCTT TCAT GAGTCAGTGG TTTTTTGTTTTTATG TERM 299 299481 - 299458 - f 80 -6.7 -4.78933 | opp_overlap 299458 299451, overlap 299453 TGAAAATATAGAAAA CCACTGGCT TTCATG AGTCAGTGG TTTTTTGTTTTTATG yedI 299582 - 300490 + | inner membrane protein VF_A0269 300867 - 300493 - | putative lipoprotein TERM 300 302026 - 302001 - R 75 -9.8 -2.71765 | gap 1, overlap 302000 ATAGTGCAAATCAAT GGCTGCGA-GA ATTGA TCATCGCAGCC GAAAGAGATTAAACG VF_A0272 303059 - 302049 - | integral membrane protein TERM 301 303055 - 303045 - G 89 -5.4 -5.40004 | TAGTAAATCAAAAAA GAAG ACT CTTC CCATAATATTCCATC VF_A0273 303302 - 304261 + | elastase 2 precursor TERM 302 304306 - 304276 - T 82 -9.9 -3.67877 | opp_overlap 304281, overlap 304281 ATGTTGGAATAAATA GAAAAGGCATAGT ATTCG ACTATGCCTTTTT AGTATTAAGAATGCT TERM 303 304281 - 304301 + T 100 -9.8 -4.87626 | opp_overlap 304276 304281 GGAATAAATAGAAAA GGCATAGT ATTCG ACTATGCC TTTTTAGTATTAAGA TERM 304 304301 - 304281 - T 100 -9.8 -4.89838 | opp_overlap 304281, overlap 304276 GGAATAAATAGAAAA GGCATAGT ATTCG ACTATGCC TTTTTAGTATTAAGA VF_A0274 305448 - 304321 - | acyl-CoA desaturase VF_A0275 305581 - 305817 + | hypothetical protein VF_A0276 307062 - 305827 - | GGDEF domain-containing protein TERM 305 307302 - 307263 - R 89 -13.8 -2.87931 | opp_overlap 307272, overlap 307265 307272 TTCATTTTCGACAGA TACAAAAAAGGCATCGTC TTTG GACAATGCCTTCGTTGTA GTGGCGGAGCGGACG TERM 306 307300 - 307265 - R 85 -12 -2.9914 | opp_overlap 307272, overlap 307263 307272 CATTTTCGACAGATA CAAAAAAGGCATCGTC TTTG GACAATGCCTTCGTTG TAGTGGCGGAGCGGA TERM 307 307293 - 307272 - R 100 -10.9 -5.4492 | opp_overlap 307272, overlap 307265 307263 GACAGATACAAAAAA GGCATCGTC TTTG GACAATGCC TTCGTTGTAGTGGCG TERM 308 307272 - 307293 + r 75 -8.7 -3.47322 | opp_overlap 307272 307265 307263 GACAGATACAAAAAA GGCATCGTC TTTG GACAATGCC TTCGTTGTAGTGGCG TERM 309 307506 - 307471 - R 93 -14.2 -2.9914 | opp_overlap 307471 307478, overlap 307478 CATTTTCGACAGATA CAAAAAAGGCATCGTC TTTC GACAATGCCTTTGTTG TGTTGGCGGAGCGGA TERM 310 307471 - 307506 + r 85 -12 -3.01712 | opp_overlap 307471 307478, overlap 307478 CATTTTCGACAGATA CAAAAAAGGCATCGTC TTTC GACAATGCCTTTGTTG TGTTGGCGGAGCGGA TERM 311 307499 - 307478 - R 100 -10.9 -5.4492 | opp_overlap 307478 307471, overlap 307471 GACAGATACAAAAAA GGCATCGTC TTTC GACAATGCC TTTGTTGTGTTGGCG TERM 312 307478 - 307499 + r 89 -8.7 -4.46073 | opp_overlap 307471 307478, overlap 307471 GACAGATACAAAAAA GGCATCGTC TTTC GACAATGCC TTTGTTGTGTTGGCG VF_A0277 308296 - 307799 - | hypothetical protein TERM 313 308428 - 308407 - R 100 -10.9 -5.61913 | AACAAATATAAAAAA GGCGATAAC TATC GCTATCGCC TTAAAAGTTTCTTTT alx 309398 - 308442 - | putative membrane-bound redox modulator that IS induced by high pH TERM 314 309911 - 309895 - g 82 -3.7 -5.51612 | ATAGAAAAAAGAAAA GAGCT TGAAGAG AGCTC GTATCGTCGTGCGCT VF_A0279 309787 - 310956 + | hypothetical protein TERM 315 310962 - 311002 + T 100 -14.2 -3.72695 | opp_overlap 310973, overlap 310973 TAAGTTTTAATTCTC CATGTGTAAAAGGAGCGC CAAGT GCGCTCCTTTTTTATATG TTTAATAAAGAGAGT TERM 316 310973 - 310991 + T 100 -11.7 -5.51046 | opp_overlap 310973, overlap 310962 TCTCCATGTGTAAAA GGAGCGC CAAGT GCGCTCC TTTTTTATATGTTTA TERM 317 310991 - 310973 - T 100 -11.7 -4.11216 | opp_overlap 310973 310962 TCTCCATGTGTAAAA GGAGCGC CAAGT GCGCTCC TTTTTTATATGTTTA VF_A0280 311988 - 311017 - | hypothetical protein TERM 318 312885 - 312842 - g 73 -8.4 -3.76402 | gap 1, opp_overlap 312841 ACCGTATTGATGAAA TTTTAGCGCC-TTACGTAACT GTG AGTTACGAAAAAGCGTTAAAA CTTGCTGAAAAGTGG nrdD 312151 - 314271 + | anaerobic ribonucleoside triphosphate reductase TERM 319 314309 - 314337 + G 70 -8.1 -3.69354 | opp_overlap 314313, overlap 314310 314315 314330 AATTGATGTGGTTAA TGGACCGGGTACG CGT TGTACCCTGTTCG TTTCAGGTTGTGAGC TERM 320 314310 - 314336 + G 71 -9.4 -2.81291 | opp_overlap 314313, overlap 314309 314315 314330 ATTGATGTGGTTAAT GGACCGGGTACG CGT TGTACCCTGTTC GTTTCAGGTTGTGAG TERM 321 314315 - 314331 + G 70 -8.7 -3.34267 | opp_overlap 314313, overlap 314310 314309 314330 TGTGGTTAATGGACC GGGTACG CGT TGTACCC TGTTCGTTTCAGGTT nrdG 314271 - 314741 + | anaerobic ribonucleotide reductase-activating protein VF_A0283 314832 - 316019 + | aromatic amino acid aminotransferase TERM 322 316122 - 316102 - g 81 -2.5 -5.62219 | AAGATAGCAAAAAAA TGGTCAACG TTA CTTTTACCA ATACTGCTTGCTGGT VF_A0284 316084 - 316725 + | ATP-dependent Zn protease TERM 323 316758 - 316777 + T 100 -12.2 -5.99154 | opp_overlap 316758 GTTTATGAATAAAAA CGCCCAAT ATAG ATTGGGCG TTTTTTTGTTTAGTC TERM 324 316777 - 316758 - T 100 -12.2 -5.1356 | opp_overlap 316758 GTTTATGAATAAAAA CGCCCAAT ATAG ATTGGGCG TTTTTTTGTTTAGTC VF_A0285 318220 - 316802 - | amino-acid ABC transporter binding protein TERM 325 317958 - 317937 - G 78 -7.3 -4.4448 | opp_overlap 317940 AAAGCGGTAAATAAA TCATCCCGA GGGA TAGGGATGA CTTGAACATTAACGT VF_A0286 319744 - 318311 - | amino-acid ABC transporter binding protein TERM 326 318992 - 319004 + g 78 -4.1 -5.1861 | ATTTACGACATTAGT TAGCT GAG GGCTA TTTTTTCGTACTGCC TERM 327 319980 - 319950 - R 73 -8.5 -3.29947 | opp_overlap 319955, overlap 319955 TATTCACTAGATGAA TATAAGTCAGC GGTTTTTTT GCTGACTTATA TAGATGGTTATGTTC VF_A0287 320548 - 320009 - | hypothetical protein TERM 328 320607 - 320591 - R 100 -9.4 -5.64274 | opp_overlap 320589 TTATCTATAAAAAAA GCCTGC AAAAA GCAGGC CAGTTTATAAGGAGA VF_A0288 321012 - 320632 - | protein YgiW precursor cobQ 321185 - 322690 + | cobyric acid synthase modA 322702 - 323439 + | molybdate ABC transporter, periplasmic molybdate-binding protein modB 323436 - 324125 + | molybdate ABC transporter permease protein modC 324129 - 325223 + | molybdate transporter ATP-binding protein yjjG 325234 - 325914 + | nucleotidase TERM 329 325930 - 325955 + T 100 -14.1 -5.00895 | opp_overlap 325930 GAAAAAAATAAAAAA GCCCTTAGGAT CTTT GTCCTAAGGGC TTTTTATGTAGTAAA TERM 330 325955 - 325930 - T 100 -13.4 -6.12458 | opp_overlap 325930 GAAAAAAATAAAAAA GCCCTTAGGA TCTTTG TCCTAAGGGC TTTTTATGTAGTAAA VF_A0294 326171 - 325995 - | hypothetical protein yaiL 326694 - 326176 - | nucleoprotein/polynucleotide-associated enzyme TERM 331 326466 - 326496 + g 85 -7 -5.02231 | overlap 326469 CAATTTTGTTTACGC TAATTAGTTGCTTA ATC TGAGCAGCTAATTC TTTTTGCTCTTTTTC TERM 332 326469 - 326493 + g 87 -8.7 -4.54753 | overlap 326466 TTTTGTTTACGCTAA TTAGTTGCTTA ATC TGAGCAGCTAA TTCTTTTTGCTCTTT VF_A0296 326739 - 327086 + | hypothetical protein TERM 333 327488 - 327440 - g 73 -7.6 -4.10953 | opp_overlap 327468 ATGTAGTAAAGCAAA GCGATGAAAATAAACGCTCTTC TGAAT GGAAAGCATTTTTCTTCATCAC AGTTGTTCTTTTCCC VF_A0297 327418 - 327594 + | TorE protein torC 327652 - 328830 + | trimethylamine N-oxide reductase, cytochrome c-type subunit TERM 334 329178 - 329154 - g 81 -5.8 -5.0133 | gap 1, opp_overlap 329177 GATTGGTTGAAAAAA CACAAGTACTC AGCT GAG-ACTCGTG GTAACAACCGTTTTA TERM 335 331283 - 331269 - g 71 -6.4 -4.15044 | CCTGGTTCTAAGAAA CACCCA TTC TGGATG CAATCTTGTCACCCT torA 328854 - 331712 + | trimethylamine N-oxide (TMAO) reductase I, catalytic subunit TERM 336 331760 - 331732 - f 84 -11.9 -2.83692 | opp_overlap 331738, overlap 331738 AATAATAAATAATAT TAAAAAGCACCTA ATT TAGGTGCTTTTTT TATATATATAATTCA TERM 337 331754 - 331738 - f 100 -10.9 -4.94672 | opp_overlap 331738, overlap 331732 AAATAATATTAAAAA GCACCTA ATT TAGGTGC TTTTTTTATATATAT TERM 338 331738 - 331754 + F 100 -10.9 -5.77988 | opp_overlap 331738 331732 AAATAATATTAAAAA GCACCTA ATT TAGGTGC TTTTTTTATATATAT VF_A0300 331950 - 333935 + | methyl-accepting chemotaxis protein TERM 339 333971 - 333942 - f 80 -7.1 -4.53685 | opp_overlap 333942 333943, overlap 333944 AAATTATAACCAAAA CAGAGCAGACAGC TATG GTTGTCTGCTCCT CATCTTATTGATTAA TERM 340 333943 - 333970 + F 79 -10.6 -2.88074 | opp_overlap 333942 333944, overlap 333942 AATTATAACCAAAAC AGAGCAGACAGC TATG GTTGTCTGCTCC TCATCTTATTGATTA TERM 341 333969 - 333944 - f 91 -11.9 -3.85899 | opp_overlap 333942 333943, overlap 333942 ATTATAACCAAAACA GAGCAGACAGC TATG GTTGTCTGCTC CTCATCTTATTGATT TERM 342 335263 - 335275 + G 72 -9.1 -3.35278 | TTACTTATGGTGGCT GGCGT TGT ACGCC TTGGTATATCCTTGA VF_A0301 334332 - 336071 + | alpha-galactosidase TERM 343 336097 - 336127 + F 85 -4.1 -5.64274 | AAAAATCAGAAATAA GGCAGGTGTAA TGTTTAAAT TTACACTTGTC TTTTTTTATGCCTAA TERM 344 337621 - 337642 + G 72 -9.5 -3.08464 | gap 1, opp_overlap 337616 AGGCATTGAACTTGA GCCGT-TCTG GAT CAGACACGGC TTCAGTAAGTAGTCA VF_A0302 336291 - 338270 + | methyl-accepting chemotaxis protein VF_A0303 338260 - 338406 + | hypothetical protein TERM 345 338453 - 338412 - T 71 -5.2 -4.60886 | opp_overlap 338413 338417, overlap 338417 AGAGAAGTAAATAAA CTAAATGCCATAGCAGCA AAGGTA TGCTGCTATGGTATGCAT TTTAATAAAACTCTT TERM 346 338413 - 338452 + T 85 -8.7 -4.26344 | opp_overlap 338412 338417, overlap 338417 GAGAAGTAAATAAAC TAAATGCCATAGCAGCA AAGGTA TGCTGCTATGGTATGCA TTTTAATAAAACTCT TERM 347 338448 - 338417 - T 100 -11.7 -4.28115 | opp_overlap 338413 338417, overlap 338412 AGTAAATAAACTAAA TGCCATAGCAGCA AAGGTA TGCTGCTATGGTA TGCATTTTAATAAAA TERM 348 338417 - 338448 + T 89 -13.9 -2.77781 | opp_overlap 338417 338412, overlap 338413 AGTAAATAAACTAAA TGCCATAGCAGCA AAGGTA TGCTGCTATGGTA TGCATTTTAATAAAA VF_A0304 339582 - 338455 - | hypothetical protein TERM 349 339501 - 339456 - G 73 -7.9 -3.88291 | gap 1, opp_overlap 339470 339473, overlap 339459 339470 TAGGATGGCTATAAA GAAGAAACAATAAATTAGCCTC GTT AAGGCTTATTT-TTATCTCTTC TTTAGTGCTATTGAT TERM 350 339470 - 339488 + g 72 -3.1 -5.1383 | opp_overlap 339470 339459 339456, overlap 339473 AGAAGAAACAATAAA TTAGCCT CGTTA AGGCTTA TTTTTATCTCTTCTT TERM 351 339473 - 339485 + g 71 -4.8 -4.62708 | opp_overlap 339470 339459 339456, overlap 339470 AGAAACAATAAATTA GCCT CGTTA AGGC TTATTTTTATCTCTT sapF 340416 - 339592 - | peptide transport system ATP-binding protein SapF sapD 341413 - 340400 - | peptide transport system ATP-binding protein SapD TERM 352 340460 - 340471 + g 76 -4.4 -5.07275 | ATGGCAGCTAAATTT GTGA TCTT TCAC TTTTTGTCTCTCTGG sapC 342300 - 341413 - | peptide transport system permease protein SapC TERM 353 341987 - 341974 - G 77 -8.1 -4.2123 | TACGCAGCCAACAAA CCCTG ATAG CAGGG CAACGATAACCGCAT sapB 343234 - 342287 - | peptide transport system permease protein SapB TERM 354 343130 - 343119 - G 93 -7.2 -5.42131 | opp_overlap 343121 CAACCAGATAAAAAA GGCG TTTG CGCC CAAGCAGATGTATCA sapA 344859 - 343234 - | peptide transport protein SapA pspF 345956 - 344937 - | DNA-binding transcriptional activator TERM 355 345670 - 345655 - G 82 -6 -4.89063 | overlap 345657 TCATCTAAAAATAAA GAGCCG CCAT CGGCAC GTTCAAATCGACCTT TERM 356 345668 - 345657 - G 73 -7.2 -4.05491 | overlap 345655 ATCTAAAAATAAAGA GCCG CCAT CGGC ACGTTCAAATCGACC TERM 357 346228 - 346214 - g 80 -4.3 -5.35222 | AAAATCCAGAAAAAA TGATC CGTTT GATCA TTCAAGAGATGGAAG pspA 346132 - 346797 + | regulatory protein for phage-shock-protein operon pspB 346861 - 347085 + | phage shock protein B pspC 347085 - 347471 + | PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair TERM 358 347502 - 347535 + F 79 -8.2 -4.06678 | overlap 347503 AGTAATACCTTGTTC ATGGAGTGTTCAGA TTAGGT TCTGTACACTCCAC TTTGTATGAATGAAT TERM 359 347503 - 347534 + F 84 -11.7 -3.03525 | overlap 347502 GTAATACCTTGTTCA TGGAGTGTTCAGA TTAGGT TCTGTACACTCCA CTTTGTATGAATGAA TERM 360 348237 - 348248 + G 70 -5.8 -4.33739 | TACCTGGAGAGCTTG CTGG TGCG CCAG TTTTGCAATTTTTTC ycjX 347567 - 348964 + | hypothetical protein ycjF 348961 - 349986 + | hypothetical protein thiD 350247 - 351125 + | phosphomethylpyrimidine kinase VF_A0317 351118 - 351864 + | hydroxymethylpyrimidine transport ATP-binding protein tauC 351857 - 352675 + | taurine transporter permease subunit VF_A0319 352703 - 353650 + | hydroxymethylpyrimidine-binding protein TERM 361 353752 - 353773 + G 71 -3.8 -4.8384 | TCAGCAATTAGCACT TGGTGAAT TAGCAC ATTCATCA TTTTTACATTATTTA VF_A0320 353669 - 354331 + | transcriptional activator TenA thiM 354364 - 355167 + | hydroxyethylthiazole kinase TERM 362 355375 - 355355 - g 71 -4.8 -4.56802 | gap 1, overlap 355357 AAAGAAATACTAAAA GA-TAGTGG TGTA CCACTAATC ATAAACGATCGTGTT TERM 363 355372 - 355357 - g 71 -7.6 -3.86037 | overlap 355355 AGAAATACTAAAAGA TAGTGG TGTA CCACTA ATCATAAACGATCGT VF_A0322 355178 - 355816 + | thiamine-phosphate pyrophosphorylase TERM 364 355835 - 355854 + T 95 -6.4 -5.94597 | opp_overlap 355835 AATTATATAGAATCA GAGCACTT TTTT GGGTGCTC TTTTTTTTGCTCTTC VF_A0323 356634 - 355822 - | GGDEF domain-containing protein TERM 365 356766 - 356742 - R 79 -3.6 -5.48623 | gap 1, opp_overlap 356742 AAATATAAAGAAAAA GCTGC-GATTA GAAA TAAACAGCAGC TTTTTGAGTGGGTAT VF_A0324 358108 - 356822 - | thiol:disulfide interchange protein DsbD TERM 366 356941 - 356956 + g 78 -2.5 -5.48825 | opp_overlap 356929, overlap 356954 CAACGGTCAGAGGAA CGCCA TATCGT TGGTG TTTTTTTAAATACTC TERM 367 359744 - 359728 - g 72 -8.7 -3.46824 | overlap 359729 GTAGTAACTAATCAA CGCTCAG AAA CTGAGCA AATTGCAACAGCGAT TERM 368 359743 - 359729 - g 72 -10 -2.67613 | overlap 359728 TAGTAACTAATCAAC GCTCAG AAA CTGAGC AAATTGCAACAGCGA VF_A0325 358786 - 360471 + | methyl-accepting chemotaxis protein TERM 369 360526 - 360492 - T 73 -8.8 -3.23532 | opp_overlap 360497, overlap 360497 ACGTAAATTAATACA TAAAAGCACAAGAT TGATGAG ATCTTGTGCTTTTT TATTACCATAATTTA TERM 370 360497 - 360521 + T 100 -9.4 -5.46657 | opp_overlap 360492 360497 AATTAATACATAAAA GCACAAGATT GATGA GATCTTGTGC TTTTTTATTACCATA TERM 371 360521 - 360497 - T 93 -8.7 -4.70453 | opp_overlap 360497, overlap 360492 AATTAATACATAAAA GCACAAGAT TGATGAG ATCTTGTGC TTTTTTATTACCATA VF_A0326 361227 - 360529 - | hypothetical protein VF_A0327 361284 - 361454 + | hypothetical protein TERM 372 361513 - 361486 - T 93 -8.4 -5.54907 | opp_overlap 361486 TGGATAAAATAAAAA TCCCCCTTGATA GCAA TATCGTGGGGGA TTTTTGATTCTATAC TERM 373 361486 - 361513 + T 100 -10.6 -4.96646 | opp_overlap 361486 TGGATAAAATAAAAA TCCCCCTTGATA GCAA TATCGTGGGGGA TTTTTGATTCTATAC TERM 374 361579 - 361548 - T 72 -6 -4.29049 | opp_overlap 361546 361548 361553, overlap 361545 GAACCATGAAAACAA GAGAATAACTGTTT TTAT ATACAGTTATTTTC TGTTTTGGTTAAATT TERM 375 361548 - 361579 + T 75 -8.2 -3.82923 | opp_overlap 361548 361545, overlap 361546 361553 GAACCATGAAAACAA GAGAATAACTGTTT TTAT ATACAGTTATTTTC TGTTTTGGTTAAATT TERM 376 361553 - 361574 + T 73 -4.5 -4.93333 | opp_overlap 361548 361545, overlap 361548 361546 ATGAAAACAAGAGAA TAACTGTTT TTAT ATACAGTTA TTTTCTGTTTTGGTT yiaD 362288 - 361620 - | outer membrane lipoprotein TERM 377 362401 - 362431 + r 87 -11.3 -3.29958 | opp_overlap 362392 362400 362399, overlap 362399 362393 AATAACGTGATAAGT GTCACCTTAAATC CAACA GAATTAAGGTGAC TGTTAGTATTATTGA VF_A0329 363000 - 362440 - | hypothetical protein VF_A0330 364505 - 363003 - | hypothetical protein TERM 378 363606 - 363584 - G 79 -9.8 -3.71848 | opp_overlap 363594 TTCGCTCATCAAGAA CGCAGCGCCA TCG TGACGCTGAG TCACCAAGTTTATTT VF_A0331 366813 - 364534 - | hypothetical protein TERM 379 366204 - 366230 + g 79 -9.6 -3.63782 | GGTTACTTGATGTTT TTGGTGTGATTA AAC TAATCGCATCAA TTTGACGTACTCTTG VF_A0332 368958 - 366823 - | TonB system receptor, putative TERM 380 367612 - 367624 + g 76 -3.4 -5.33985 | opp_overlap 367612 AGAAACACTAGGAGA TAGC TCACT GCTA TTTATTTTTTTTACA ptrB 370978 - 368975 - | protease II TERM 381 369790 - 369762 - G 71 -7 -4.03234 | gap 1, opp_overlap 369766 369768, overlap 369765 TCTGTTGCATACAAA GAAGCATCAATAT TTGG ATATTGAT-CTTC TAAGTACAGCGCTCT TERM 382 371210 - 371183 - R 71 -8.6 -3.13432 | opp_overlap 371182 371183 TTCAAGAGGAGGGAA GCATACAGTT ATGACTTA AACTGTATGC ATTAATATTATTTTT VF_A0334 371736 - 371218 - | MarR family transcriptional regulator TERM 383 371315 - 371304 - G 80 -4.4 -5.24129 | GGCTTTTACAAAAAA TACC GTTA GGTA CAGATAGGGCTTTGT VF_A0335 371836 - 372258 + | osmotically inducible protein C VF_A0336 372277 - 372672 + | hypothetical protein TERM 384 372692 - 372731 + T 81 -9.6 -3.38584 | opp_overlap 372700, overlap 372700 ACGTGAGTAGCACAA TGAAGAAAGGGATATG AAATTAAC CATATCCCTTTTTTTA TTAATTAGCTAATGT TERM 385 372723 - 372700 - T 81 -7.5 -4.37199 | opp_overlap 372692 372700 AGCACAATGAAGAAA GGGATATGA AATTAA CCATATCCC TTTTTTTATTAATTA TERM 386 372700 - 372723 + T 95 -6.8 -5.87996 | opp_overlap 372700, overlap 372692 AGCACAATGAAGAAA GGGATATG AAATTAAC CATATCCC TTTTTTTATTAATTA VF_A0338 375132 - 372754 - | putative glucosyl hydrolase precursor TERM 387 374222 - 374235 + g 70 -3.1 -4.89339 | GCTGGTGTTGCGTTA GGGTT TGTT AATCC TTTTTCTAGATAATT TERM 388 374782 - 374793 + g 76 -4.4 -5.10077 | GCTGTATGCCTCCAT GTTG AATT CAAC TTTTTTACCATCTTT ygjJ 376258 - 375263 - | hypothetical protein TERM 389 376552 - 376583 + r 78 -10.3 -2.69151 | opp_overlap 376557, overlap 376557 TAGATTGATTGAATA AAAAAGGCACTGA ATATTA TCAGTGCCTTTTG TCATATCTAGGGGAA TERM 390 376557 - 376578 + r 100 -10.2 -4.53163 | opp_overlap 376557, overlap 376552 TGATTGAATAAAAAA GGCACTGA ATATTA TCAGTGCC TTTTGTCATATCTAG TERM 391 376578 - 376557 - R 100 -10.2 -5.4833 | opp_overlap 376557 376552 TGATTGAATAAAAAA GGCACTGA ATATTA TCAGTGCC TTTTGTCATATCTAG VF_A0340 378046 - 376622 - | amino acid permease TERM 392 376936 - 376956 + g 70 -9.1 -3.19965 | overlap 376927 376935 376933 GTAGCATTGCAGTAC CTGCAGTTA GGT TAATTGCAG TATTCATCATCTCTT TERM 393 377714 - 377690 - G 73 -8.7 -3.66742 | TGGAGAGAAAGAATA TTCATACCCTA GCA TAGCGTATGAA GCGTAAGCGATAACG VF_A0341 378930 - 378811 - | hypothetical protein TERM 394 379789 - 379801 + G 70 -5.5 -4.37863 | GTGTTGTCTTCTTTG CCGCA TTA TGTGG TTATTATTTTTATGT VF_A0342 378969 - 380300 + | GGDEF domain-containing protein VF_A0343 380290 - 381618 + | GGDEF domain-containing protein VF_A0344 381624 - 383054 + | EAL domain-containing protein TERM 395 383104 - 383080 - T 100 -11.5 -5.42514 | opp_overlap 383080 GCATAAATGAAAAAA GATCCGAGAAT ATT ATTCACGGATC TTTAGGTGCTAAGGT TERM 396 383080 - 383104 + T 90 -11.5 -3.68529 | opp_overlap 383080 GCATAAATGAAAAAA GATCCGAGAAT ATT ATTCACGGATC TTTAGGTGCTAAGGT ygjI 384555 - 383125 - | transporter TERM 397 384623 - 384663 + r 77 -4.7 -5.1287 | overlap 384626 AAGTAATGGTATTGG TGTGGAGGGATTTGGTC ATGGTTG GAACCAATCCCTCCTTA TTTTTTGGCTCTGAA TERM 398 384626 - 384660 + r 93 -8.6 -4.65666 | overlap 384623 TAATGGTATTGGTGT GGAGGGATTTGGTC ATGGTTG GAACCAATCCCTCC TTATTTTTTGGCTCT ebgC 385181 - 384729 - | cryptic beta-D-galactosidase subunit beta ebgA 388282 - 385181 - | cryptic beta-D-galactosidase subunit alpha TERM 399 388600 - 388582 - R 100 -7.4 -5.82172 | opp_overlap 388582 ATTAATATAAAAAAA GCAACGCC ATA AACGTTGC TTAATGTAGGTAGTA ebgR 389627 - 388632 - | DNA-binding transcriptional repressor EbgR TERM 400 389581 - 389606 + g 73 -8.3 -3.62756 | overlap 389579 ACACGAGAAACCGTT GCCAATGAAAC TTCA GCTTCGTTGGC TATTTCCTTTAACGT VF_A0349 390508 - 389729 - | DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) VF_A0350 392371 - 390512 - | cyclic nucleotide binding protein/CBS domain-containing proteins TERM 401 391670 - 391686 + g 77 -8.1 -4.21974 | CATCACTAAATCATC TTCATAC ACG GTATGAA TTTCTTGGGTCATGA TERM 402 391846 - 391809 - G 70 -3.5 -4.92757 | gap 1 TCATCAACAATAAAA GCACATGAAACGC-CAAC CAC ATTGCGCATTTGATGAGC TACAGCTTGAATCGT TERM 403 392435 - 392488 + r 72 -9.4 -2.75183 | opp_overlap 392434 392435 392481, overlap 392450 ACGCTCTACAAACAT TGCAGGCTATTCATATTAATTG-CAA CCAA TTGATAATTAATATGAATAGCCC-CA TCATTGGATGAGGCT TERM 404 392488 - 392435 - R 72 -9.4 -2.71125 | opp_overlap 392435 392450, overlap 392434 392481 ACGCTCTACAAACAT TGCAGGCTATTCATATTAATT-GCAA CCAA TTGATAATTAATATGAATAGCCC-CA TCATTGGATGAGGCT TERM 405 392504 - 392481 - R 90 -11.8 -3.43218 | opp_overlap 392435, overlap 392435 392434 GATAATTAATATGAA TAGCCCCATC ATTG GATGAGGCTA GAGAAGATTACCAGA yidK 394143 - 392512 - | transporter TERM 406 393925 - 393913 - G 73 -5.5 -4.59081 | TAAACCGATAGAAAA GCCAG ATC CTGAC ATTCCAATAAATTGT TERM 407 394111 - 394101 - G 79 -5.4 -4.86133 | CATAGAGAGCAAAAA CGAT GAT ATCG ACAATACCTAATCCA TERM 408 394340 - 394353 + H 73 -3.9 -5.03715 | CTTTTTTTGCTTTAG TGTAA ACGT TTACA TTTTTTGAAACTGAT galE 394429 - 395439 + | UDP-galactose-4-epimerase galT 395577 - 396629 + | galactose-1-phosphate uridylyltransferase galK 396823 - 397977 + | galactokinase TERM 409 398021 - 398055 + G 80 -10.1 -3.63515 | gap 1, opp_overlap 398018 398015 398025 398028, overlap 398028 TGTTCGAAACCATGA CTAAG-GAGGCGACCA GCGA TGGTCGCCTTGCTCAG TTATTCGAACTGAAA TERM 410 398028 - 398047 + G 93 -13.6 -3.25169 | opp_overlap 398025 398018 398015 398028, overlap 398021 AACCATGACTAAGGA GGCGACCA GCGA TGGTCGCC TTGCTCAGTTATTCG TERM 411 398047 - 398028 - g 91 -13.6 -2.8076 | opp_overlap 398028 398021, overlap 398025 398018 398015 AACCATGACTAAGGA GGCGACCA GCGA TGGTCGCC TTGCTCAGTTATTCG galM 397987 - 399048 + | aldose 1-epimerase TERM 412 399070 - 399097 + T 84 -11.4 -3.13826 | opp_overlap 399075, overlap 399075 AGGCCATTAGATAGA AAAAAGGAGCGA TCAT TCGCTCCTTTTG ATTTCGTTCTTTTTA TERM 413 399075 - 399092 + T 100 -11.3 -4.62957 | opp_overlap 399075, overlap 399070 ATTAGATAGAAAAAA GGAGCGA TCAT TCGCTCC TTTTGATTTCGTTCT TERM 414 399092 - 399075 - T 100 -11.3 -5.43414 | opp_overlap 399070 399075 ATTAGATAGAAAAAA GGAGCGA TCAT TCGCTCC TTTTGATTTCGTTCT VF_A0357 402172 - 399122 - | acriflavin resistance plasma membrane protein TERM 415 399669 - 399681 + g 72 -3.4 -5.01732 | TAACCTGATGGCAGC TCGA TCGCT TCGA TTTTTTGACGAACTT VF_A0358 403288 - 402176 - | acriflavin resistance periplasmic protein TERM 416 402735 - 402747 + g 87 -4.9 -5.42259 | GCTTGAATTTGGACG TGATT ATC AATCA TTTTTTTGCCAATCA TERM 417 402846 - 402867 + g 71 -3.7 -4.90136 | GCTAGTTGATAACGA GTGGTTAAG GTAT CTAAATCAC TTTTTGCTATTGCTT TERM 418 403354 - 403412 + H 83 -7.9 -4.73614 | gap 1, opp_overlap 403355 403360 403394, overlap 403355 GTTTTATAGTTATAA AGTAAACTCTTGAGTTTATTTTATACGT AAAA AC-TATAAAGTAAACTCAAAAGTATACA TTTGTTTTGGTAATG TERM 419 403355 - 403411 + H 89 -11.4 -3.43084 | gap 1, opp_overlap 403355 403360 403394, overlap 403354 TTTTATAGTTATAAA GTAAACTCTTGAGTTTATTTTATACGT AAAA AC-TATAAAGTAAACTCAAAAGTATAC ATTTGTTTTGGTAAT TERM 420 403411 - 403355 - H 93 -11.4 -3.95073 | gap 1, opp_overlap 403354 403355, overlap 403360 403394 TTTTATAGTTATAAA GTAAACTCTTGAGTTTATTTTATACGT AAAA AC-TATAAAGTAAACTCAAAAGTATAC ATTTGTTTTGGTAAT TERM 421 403406 - 403360 - H 93 -9.9 -4.15066 | gap 1, opp_overlap 403355 403354, overlap 403355 403394 TAGTTATAAAGTAAA CTCTTGAGTTTATTTTATACGT AAAA AC-TATAAAGTAAACTCAAAAG TATACATTTGTTTTG VF_A0359 403459 - 404070 + | TetR family transcriptional regulator VF_A0360 404218 - 406812 + | sensor histidine kinase galR 407840 - 406842 - | DNA-binding transcriptional repressor TERM 422 407879 - 407890 + H 71 -3 -5.08483 | opp_overlap 407879, overlap 407874 TTTGATCGAGTTAAA GTTT TAGT AAAC TTTTATTTCGTTTTC ygjH 407971 - 408303 + | hypothetical protein TERM 423 408319 - 408344 + F 73 -8.3 -3.60296 | opp_overlap 408319 408315 TACCTTTAAAATTAA GTGCCATTAAG AAAA CATAATGGCGC TTTAAAATAAAAGTC VF_A0363 408563 - 410071 + | sodium/proton-dependent alanine carrier protein TERM 424 410118 - 410100 - f 100 -11.8 -5.4593 | opp_overlap 410100 CTAAAATAAGAAAAA TGCCGTTA ATG TAACGGCA TTTTTTATGTCAAAT TERM 425 410100 - 410118 + F 100 -11.8 -5.37043 | opp_overlap 410100 CTAAAATAAGAAAAA TGCCGTTA ATG TAACGGCA TTTTTTATGTCAAAT VF_A0364 410151 - 410543 + | transporter VF_A0365 410624 - 410971 + | translation initiation inhibitor TERM 426 411213 - 411243 + F 83 -4.7 -5.5112 | TATACACTTGTCTCT GTCGTCGTTGTCA TTCAC TGATACTGACGGC TTTTTTATTCGTCAG TERM 427 411551 - 411577 + G 85 -6.6 -5.0925 | TTAACAGCGCTATTA CCTAAATGGATG GAC CGTTCATTTTGG TTTTTAGTTTTAACC TERM 428 412094 - 412080 - g 73 -8.6 -3.63068 | CTACATCATCTGAAA TTGCAC CAA GTGCAA CCAATGGTGGTGAGA VF_A0366 411335 - 412651 + | branched-chain amino acid transport system II carrier protein TERM 429 412674 - 412694 + F 100 -11.9 -5.61881 | opp_overlap 412674 TTGCGTATTGATAAA GAGCAGCCA TAA TGGTTGCTC TTTTTGTTTTTGGAA TERM 430 412694 - 412674 - f 87 -9.7 -3.91897 | opp_overlap 412674 TTGCGTATTGATAAA GAGCAGCCA TAA TGGTTGCTC TTTTTGTTTTTGGAA VF_A0367 412725 - 413621 + | deacetylase VF_A0368 413840 - 415525 + | hypothetical protein TERM 431 415555 - 415574 + F 95 -8.6 -5.72616 | opp_overlap 415554 415555 TTCCCACTGATTAAG CCGCTAAT TTAA GTTAGCGG TTTTTTTATATGCGT TERM 432 415817 - 415807 - g 78 -4 -5.33405 | opp_overlap 415807 CGTAGGAAATAAAAA TGAT TAC ATCA TTAGTTAATACCGAC VF_A0369 415806 - 416237 + | PTS system, fructose-like-1 IIA component VF_A0370 416255 - 417658 + | PTS system, fructose-like enzyme IIC component TERM 433 417705 - 417683 - T 81 -7.8 -4.45664 | opp_overlap 417683, overlap 417703 CTAAGTTAATTAAAA GCCTCTTA CTCCCCC TAAGAGGC TTTTTGTTATTAACA TERM 434 417683 - 417705 + T 89 -7.8 -5.29445 | opp_overlap 417683 417703 CTAAGTTAATTAAAA GCCTCTTA CTCCCCC TAAGAGGC TTTTTGTTATTAACA TERM 435 417724 - 417759 + T 80 -4.7 -5.26875 | opp_overlap 417703 417728, overlap 417726 417728 TTGTTATTAACAATA AAAAGCCCGCATTAT TTCCTT ATACTGCGGGCTATC TTTTTTAATTCGGAA TERM 436 417726 - 417757 + T 75 -7.3 -4.26777 | opp_overlap 417703 417728, overlap 417724 417728 GTTATTAACAATAAA AAGCCCGCATTAT TTCCTT ATACTGCGGGCTA TCTTTTTTAATTCGG TERM 437 417728 - 417755 + T 83 -9.9 -3.71857 | opp_overlap 417703 417728, overlap 417726 417724 TATTAACAATAAAAA GCCCGCATTAT TTCCTT ATACTGCGGGC TATCTTTTTTAATTC TERM 438 417755 - 417728 - T 100 -9.9 -5.31855 | opp_overlap 417726 417724 417728, overlap 417703 TATTAACAATAAAAA GCCCGCATTAT TTCCTT ATACTGCGGGC TATCTTTTTTAATTC VF_A0371 418373 - 417813 - | hypothetical protein TERM 439 418344 - 418324 - G 79 -5.5 -5.00467 | overlap 418326 CCAACAATAATAAAA TATTTCCAA CCT TTGGAAATT AAAGCCTGACTTGGA TERM 440 418342 - 418326 - G 75 -8.1 -4.10348 | overlap 418324 AACAATAATAAAATA TTTCCAA CCT TTGGAAA TTAAAGCCTGACTTG ybdG 418805 - 420064 + | mechanosensitive channel TERM 441 420099 - 420080 - f 81 -9.4 -3.89291 | opp_overlap 420080 420079 GCAATACCATAATAA TACCAGTT CTTA AACTGGTA CTTTTCACATTTATC TERM 442 420080 - 420099 + F 77 -9.4 -3.14991 | opp_overlap 420080, overlap 420079 GCAATACCATAATAA TACCAGTT CTTA AACTGGTA CTTTTCACATTTATC VF_A0373 420219 - 421493 + | mechanosensitive ion channel TERM 443 421674 - 421648 - f 75 -8.9 -3.34344 | gap 1, opp_overlap 421648 TTACTTTCTAATTAA TCCAGTGTATCT GCAA AG-TACACTGGA TTTTTCTTATGTTTA TERM 444 421648 - 421674 + F 95 -8.9 -5.33331 | gap 1, opp_overlap 421648 TTACTTTCTAATTAA TCCAGTGTATCT GCAA AG-TACACTGGA TTTTTCTTATGTTTA VF_A0374 421737 - 423041 + | ATP-dependent RNA helicase TERM 445 423077 - 423049 - f 95 -9 -4.97405 | opp_overlap 423056, overlap 423056 AGCGATAAAAACAAA TAAAAAAGGTGC GTACA GCACCTTTTTTT AAATGTAAATGTTAC TERM 446 423070 - 423056 - f 100 -7.1 -5.88476 | opp_overlap 423056, overlap 423049 AAAACAAATAAAAAA GGTGC GTACA GCACC TTTTTTTAAATGTAA TERM 447 423056 - 423070 + F 93 -7.1 -5.50499 | opp_overlap 423049 423056 AAAACAAATAAAAAA GGTGC GTACA GCACC TTTTTTTAAATGTAA VF_A0375 423316 - 424194 + | hypothetical protein VF_A0376 424198 - 425322 + | hypothetical protein VF_A0377 425333 - 426385 + | hypothetical protein TERM 448 426408 - 426435 + T 100 -9.8 -4.98128 | opp_overlap 426408 TTATTAATAATAAAA GCCCTGTTTCGA TTTC TCGTATCAGGGC TTTATTTTTAATTAT TERM 449 426435 - 426408 - T 100 -9.8 -4.92757 | opp_overlap 426408 TTATTAATAATAAAA GCCCTGTTTCGA TTTC TCGTATCAGGGC TTTATTTTTAATTAT TERM 450 426486 - 426502 + T 77 -5.9 -4.68593 | TTTGCTTTACCCATA TTTGGTG TCG TACCAAA TTTTTCAGTGCTAAA VF_A0378 428065 - 426464 - | glycine betaine transporter TERM 451 428238 - 428202 - R 100 -16.9 -4.0641 | opp_overlap 428208, overlap 428208 TTTTATTGATATAAA TAAAAACGCCTTAAAAC AGT GTTTTAAGGCGTTTTGA TACAGATTAAAGGTG TERM 452 428232 - 428208 - R 100 -15.9 -5.42975 | opp_overlap 428208, overlap 428202 TGATATAAATAAAAA CGCCTTAAAAC AGT GTTTTAAGGCG TTTTGATACAGATTA TERM 453 428208 - 428232 + r 100 -15.9 -4.2679 | opp_overlap 428202 428208 TGATATAAATAAAAA CGCCTTAAAAC AGT GTTTTAAGGCG TTTTGATACAGATTA yiaV 429385 - 428255 - | membrane fusion protein (MFP) component of efflux pump, signal anchor TERM 454 428865 - 428875 + g 70 -5.4 -4.34932 | opp_overlap 428855 ACCGATTCTAATGTT GCTT CAG AAGC TTTGTATGTTTGTTT yiaW 429765 - 429385 - | inner membrane protein TERM 455 429867 - 429913 + rH 84 -6.2 -5.31877 | gap 1, opp_overlap 429860 429861 429879, overlap 429879 GTTAATAAGTTTTTA GAAACAAAAAAACCGACT-AT AAGCAA ATGAGTCGGTTTTTTTGATTG TTTTTTATACTGGGT TERM 456 429879 - 429901 + rH 80 -2.8 -5.73672 | gap 1, opp_overlap 429879, overlap 429867 TTAGAAACAAAAAAA CCGACT-AT AAGCAA ATGAGTCGG TTTTTTTGATTGTTT TERM 457 429901 - 429879 - RH 91 -2.8 -6.02919 | gap 1, opp_overlap 429867 429879 TTAGAAACAAAAAAA CCGACT-AT AAGCAA ATGAGTCGG TTTTTTTGATTGTTT VF_A0381 431086 - 429932 - | GGDEF domain-containing protein VF_A1180 431076 - 431252 + | hypothetical protein VF_A0382 431309 - 431668 + | hypothetical protein TERM 458 431714 - 431685 - T 100 -10.9 -5.1963 | opp_overlap 431690, overlap 431690 GCTAAGTAATAAAAA GAAAACCCATACT ATGA AGTATGGGTTTTT GTTTGTACGAAATAA TERM 459 431690 - 431709 + T 100 -10.8 -5.38054 | opp_overlap 431685 431690 GTAATAAAAAGAAAA CCCATACT ATGA AGTATGGG TTTTTGTTTGTACGA TERM 460 431709 - 431690 - T 100 -10.8 -5.42605 | opp_overlap 431690, overlap 431685 GTAATAAAAAGAAAA CCCATACT ATGA AGTATGGG TTTTTGTTTGTACGA rnb 433780 - 431738 - | exoribonuclease II TERM 461 434818 - 434800 - g 77 -5.2 -4.86033 | opp_overlap 434800 AAAGGCGTAGAAAAA GACGAAGC AAT GTCTCGTC TACTTGAAACTGAAG deaD 434104 - 436008 + | ATP-dependent RNA helicase TERM 462 436059 - 436029 - f 100 -11.3 -4.63107 | opp_overlap 436035 436056, overlap 436035 AGCAAATAATCAAAA TAAAAACCGAGCT CATGT AGCTCGGTTTTTT ATGTCTGCATAAAAT TERM 463 436053 - 436035 - f 100 -10.3 -5.54338 | opp_overlap 436035, overlap 436029 TAATCAAAATAAAAA CCGAGCT CATGT AGCTCGG TTTTTTATGTCTGCA TERM 464 436035 - 436053 + F 100 -10.3 -5.4251 | opp_overlap 436035 436029 TAATCAAAATAAAAA CCGAGCT CATGT AGCTCGG TTTTTTATGTCTGCA speG 436289 - 436825 + | spermidine N1-acetyltransferase TERM 465 436859 - 436828 - T 93 -13.2 -3.34089 | opp_overlap 436828 436833, overlap 436833 TCGTAATAATTAATA GAAAAGGGCTTCTA ATAT TAGAAGCCCTTTTA TTTGCCAACCGTACG TERM 466 436828 - 436859 + T 95 -13.2 -3.53811 | opp_overlap 436828 436833, overlap 436833 TCGTAATAATTAATA GAAAAGGGCTTCTA ATAT TAGAAGCCCTTTTA TTTGCCAACCGTACG TERM 467 436854 - 436833 - T 100 -13.1 -4.74767 | opp_overlap 436828 436833, overlap 436828 ATAATTAATAGAAAA GGGCTTCTA ATAT TAGAAGCCC TTTTATTTGCCAACC TERM 468 436833 - 436854 + T 100 -13.1 -4.86731 | opp_overlap 436833 436828, overlap 436828 ATAATTAATAGAAAA GGGCTTCTA ATAT TAGAAGCCC TTTTATTTGCCAACC VF_A0386 438349 - 436886 - | formate/nitrite transporter family protein TERM 469 438937 - 438927 - g 72 -3.2 -5.03314 | opp_overlap 438916 TTTAGGTGTAAAAAA CACC TCT GGTA TTATTGAAGGGGTAT VF_A0387 438535 - 439446 + | LysR family transcriptional regulator VF_A0388 439542 - 440222 + | hypothetical protein TERM 470 440254 - 440277 + F 100 -11.8 -5.71712 | opp_overlap 440254 TATTTATTATAAAAA CGGTCAACTT TATA AGGTTGACCG TTTTTTTATGTAAAA TERM 471 440277 - 440254 - f 100 -9.6 -4.9218 | opp_overlap 440254 TATTTATTATAAAAA CGGTCAACTT TATA AGGTTGACCG TTTTTTTATGTAAAA VF_A0389 440416 - 442281 + | methyl-accepting chemotaxis protein TERM 472 442309 - 442342 + T 86 -12.7 -2.66042 | opp_overlap 442294 442293 442309 442316, overlap 442316 TATCAATTAAATTGA TATAAAAGCTCAAGA GTAT TCTTGAGCTTTTTTA GTTATGCTAGCTATT TERM 473 442342 - 442309 - T 86 -12.7 -2.71693 | opp_overlap 442309 442316, overlap 442294 442293 442316 TATCAATTAAATTGA TATAAAAGCTCAAGA GTAT TCTTGAGCTTTTTTA GTTATGCTAGCTATT TERM 474 442316 - 442335 + T 100 -10.8 -5.33848 | opp_overlap 442309 442316, overlap 442309 TAAATTGATATAAAA GCTCAAGA GTAT TCTTGAGC TTTTTTAGTTATGCT TERM 475 442335 - 442316 - T 100 -10.8 -4.59081 | opp_overlap 442316 442309, overlap 442309 TAAATTGATATAAAA GCTCAAGA GTAT TCTTGAGC TTTTTTAGTTATGCT VF_A0390 443213 - 442353 - | amino acid ABC transporter permease protein VF_A0391 444026 - 443217 - | ABC transporter amino acid-binding protein glnP 444835 - 444041 - | amino acid ABC transporter permease protein VF_A0393 445583 - 444837 - | amino acid transport ATP-binding protein aroG 445832 - 446884 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 476 446906 - 446929 + T 100 -13.2 -5.73339 | opp_overlap 446906 TTTATAAAACATAAA CGCCAACAGT GTAT GCTGTTGGCG TTTTTTTATCCTTGT TERM 477 446929 - 446906 - T 100 -12.5 -4.51238 | opp_overlap 446906 TTTATAAAACATAAA CGCCAACAG TGTATG CTGTTGGCG TTTTTTTATCCTTGT ybjD 448569 - 446935 - | hypothetical protein VF_A0396 448796 - 450535 + | 5'-nucleotidase TERM 478 450694 - 450717 + F 100 -10.4 -5.4756 | opp_overlap 450694 GGGTGACATTTAAAA GGCTTTCTAA TTAA TTAGGAAGCC TTTTTTATTAGCGTT TERM 479 450717 - 450694 - f 81 -8.2 -4.2349 | opp_overlap 450694 GGGTGACATTTAAAA GGCTTTCTAA TTAA TTAGGAAGCC TTTTTTATTAGCGTT TERM 480 450800 - 450818 + F 79 -4 -5.5604 | overlap 450786 GTTAACGTAAATTGT TTAAATTA TGT TAATTTGA TTTTTTATTCATTAA TERM 481 450938 - 450926 - f 71 -3.4 -5.12068 | TACATTGAAGAAAAA GTCA TTTTT TGAC CAATAAATTAAGCTT TERM 482 451084 - 451096 + G 71 -4.1 -4.93877 | AAAGGATTGATTGCT CATCT TGT GGATG TTTTGTTTGGTAAAG VF_A0397 450997 - 451185 + | hypothetical protein TERM 483 451195 - 451235 + T 86 -10.8 -3.17486 | gap 1, opp_overlap 451206, overlap 451198 451206 451220 CGTTAAGATATAGAC GA-ATGGAAAAAGCTAGCA AGTT TGCTAGCTTTTTTTATATC TTAATAAAAGTTATT TERM 484 451198 - 451231 + T 87 -12.7 -3.13073 | opp_overlap 451206, overlap 451195 451206 451220 TAAGATATAGACGAA TGGAAAAAGCTAGCA AGTT TGCTAGCTTTTTTTA TATCTTAATAAAAGT TERM 485 451206 - 451223 + T 100 -9.9 -5.80248 | opp_overlap 451206, overlap 451198 451195 451220 AGACGAATGGAAAAA GCTAGCA AGTT TGCTAGC TTTTTTTATATCTTA TERM 486 451223 - 451206 - T 100 -9.9 -4.76892 | opp_overlap 451206 451198 451195 451220 AGACGAATGGAAAAA GCTAGCA AGTT TGCTAGC TTTTTTTATATCTTA VF_A0398 452837 - 451254 - | GGDEF domain-containing protein TERM 487 451284 - 451304 + g 79 -8.3 -4.03234 | TTTATTCTTTCCGGA GCGTTTTGC TTG GTAAAGCGC TTTATCTGCACGAAG VF_A0399 454308 - 452839 - | hypothetical protein lsrR 455410 - 454430 - | transcriptional repressor VF_A0401 456888 - 455419 - | hypothetical protein deoD2 457656 - 456946 - | purine nucleoside phosphorylase VF_A0403 457990 - 458652 + | potassium uptake protein KtrA TERM 488 459400 - 459410 + G 70 -3.2 -4.89567 | CATTGTTATTGGTCG GGAC GTT GTTC TTTTATATTTTAGAA VF_A0404 458649 - 460013 + | potassium uptake protein KtrB TERM 489 460242 - 460211 - T 89 -8.9 -4.4715 | opp_overlap 460216, overlap 460216 GTTCAATCCATAAAA GAAAAGGCATACA AAATAG TGTATGCCTTTTT TATGTTTTTCAGATC TERM 490 460237 - 460216 - T 95 -8.8 -5.19275 | opp_overlap 460216, overlap 460211 ATCCATAAAAGAAAA GGCATACA AAATAG TGTATGCC TTTTTTATGTTTTTC TERM 491 460216 - 460237 + T 95 -8.8 -5.69068 | opp_overlap 460211 460216 ATCCATAAAAGAAAA GGCATACA AAATAG TGTATGCC TTTTTTATGTTTTTC ynaI 461337 - 460264 - | inner membrane protein VF_A0406 462006 - 461356 - | hydrogenase cytochrome b-type TERM 492 461968 - 461945 - G 88 -11.1 -4.0162 | opp_overlap 461938 GCGGTATACCATAAA GAGCCAAGT ACAACG ACTTGGCTC CAGTGGTAAATTCGG VF_A0407 462477 - 462022 - | cytochrome c' VF_A0408 462673 - 463200 + | phosphohydrolase (MutT/nudix family protein) ypeB 463190 - 463411 + | hypothetical protein TERM 493 463413 - 463461 + T 80 -9.4 -3.6959 | gap 2 AATATCGTCGTTAAC TTTAGATGGTTCAATTAACATAAT GAT GTT-TGTTAATTGAACC-TCTAGA TTTCAATCATAGTCT VF_A0410 463809 - 463483 - | hypothetical protein TERM 494 464152 - 464167 + G 74 -4.7 -5.00616 | opp_overlap 464164, overlap 464164 ATTGGGGAATGACTC CGCAA GAAAGA TTGCG TTTTTTAAAACAGCA ydhF 464061 - 464975 + | oxidoreductase TERM 495 465028 - 465007 - T 100 -10.2 -5.48514 | opp_overlap 465007 AGTAAGAAACAAAAA TGGGATGC AATTTG GCATCCCA TTTTTATTGTTAGCT TERM 496 465007 - 465028 + T 100 -10.2 -5.30348 | opp_overlap 465007 AGTAAGAAACAAAAA TGGGATGC AATTTG GCATCCCA TTTTTATTGTTAGCT pyrC 466087 - 465059 - | dihydroorotase TERM 497 466210 - 466196 - H 73 -3.6 -5.05079 | AGAACGATAGAAAAA GTTATA ATT TACAAC AAAGAAGACACAATA VF_A0413 466371 - 466568 + | hypothetical protein TERM 498 466592 - 466545 - f 100 -14.4 -3.70149 | opp_overlap 466547, overlap 466547 466560 GGGAGAGGAGGTAAA GAGCCCTATTCAAAAGCAACAT AAGA ATGTTGAGTTTGAATAGGGCTT TTTTTGTGATCAATA TERM 499 466547 - 466590 + F 100 -17 -5.67063 | opp_overlap 466545 466547 466560 GAGAGGAGGTAAAGA GCCCTATTCAAAAGCAACAT AAGA ATGTTGAGTTTGAATAGGGC TTTTTTTGTGATCAA TERM 500 466590 - 466547 - f 100 -17 -3.43109 | opp_overlap 466547, overlap 466545 466560 GAGAGGAGGTAAAGA GCCCTATTCAAAAGCAACAT AAGA ATGTTGAGTTTGAATAGGGC TTTTTTTGTGATCAA TERM 501 466840 - 466798 - f 87 -13.1 -2.73124 | gap 1, opp_overlap 466810, overlap 466810 CTGTACGCTCCAAAT TCTATAAAAAAAGCTCTCGT ATTA ACGAGAGCTTTTTTTAT-GC CTGTAATTTATACAA TERM 502 466810 - 466829 + F 100 -12.2 -5.65177 | opp_overlap 466798 466810 AATTCTATAAAAAAA GCTCTCGT ATTA ACGAGAGC TTTTTTTATGCCTGT TERM 503 466829 - 466810 - f 100 -12.2 -5.63504 | opp_overlap 466810, overlap 466798 AATTCTATAAAAAAA GCTCTCGT ATTA ACGAGAGC TTTTTTTATGCCTGT VF_A0414 466959 - 469289 + | ATP-dependent protease (Lon-like) TERM 504 469314 - 469334 + F 95 -6.2 -6.08563 | opp_overlap 469303 469314, overlap 469303 AAGATATTATAAAAA TGTACAGG TGTGT TCTGTACA TTTTTTTTATATGTT TERM 505 469334 - 469314 - f 77 -5.5 -4.97666 | opp_overlap 469314 469303, overlap 469303 AAGATATTATAAAAA TGTACAG GTGTGTT CTGTACA TTTTTTTTATATGTT TERM 506 470273 - 470260 - g 71 -3.9 -4.86613 | GAAAACCAAAACAAA TTCAA ATGA TTGAA GCAGAAGATAAATCA VF_A0415 469485 - 470714 + | hypothetical protein TERM 507 470744 - 470784 + T 88 -5.8 -5.59502 | opp_overlap 470744 470746 470749, overlap 470749 AGATAACCTAAAAAA TAGAAGCTCCT-TAGTTTTA TCT TAAAACGAGAGGAGCTT-TA TTTTTTACTTTTTTG TERM 508 470784 - 470744 - T 83 -5.8 -5.20154 | opp_overlap 470744 470749, overlap 470746 470749 AGATAACCTAAAAAA TAGAAGCTCCT-TAGTTTTA TCT TAAAACGAGAGGAGCTT-TA TTTTTTACTTTTTTG TERM 509 470783 - 470746 - T 71 -6.5 -4.21792 | gap 1, opp_overlap 470744 470749, overlap 470744 470749 ATAACCTAAAAAATA GAAGCTCCT-TAGTTTTA TCT TAAAACGAGAGGAGCTTT ATTTTTTACTTTTTT TERM 510 470780 - 470749 - T 81 -8.2 -4.19369 | gap 1, opp_overlap 470744 470749, overlap 470746 470744 ACCTAAAAAATAGAA GCTCCT-TAGTTTTA TCT TAAAACGAGAGGAGC TTTATTTTTTACTTT TERM 511 470749 - 470780 + T 90 -8.2 -5.14819 | gap 1, opp_overlap 470749 470746 470744, overlap 470744 ACCTAAAAAATAGAA GCTCCT-TAGTTTTA TCT TAAAACGAGAGGAGC TTTATTTTTTACTTT VF_A0416 471130 - 470789 - | DOPA 4,5-dioxygenase TERM 512 471183 - 471164 - R 100 -8.6 -5.85244 | opp_overlap 471164 AATGAAAATAAAAAA GGCCAAAC CGAA GTTTAGCC TTATTATAGTTCATT tdh 472244 - 471213 - | L-threonine 3-dehydrogenase kbl 473440 - 472244 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 513 474476 - 474462 - g 72 -3.6 -5.07652 | overlap 474463 GTTTGTAAAAGAAAA CTTGAT GAA ATCAAA GGTAAATGATGAAAG VF_A0419 473563 - 474498 + | LysR family transcriptional regulator TERM 514 474767 - 474747 - g 84 -6.9 -4.9725 | ATGTGTATAGAAAAA TAGCTCAAA AAT TTGGAGCTA AGATTAAGATAGATG VF_A0420 474485 - 474862 + | hypothetical protein TERM 515 475096 - 475124 + F 75 -9.7 -2.71022 | opp_overlap 475103 475104, overlap 475095 475103 475104 TTAAATGACACTTCA CGCAAAATTAAGC AAC GCTTAGTTTTGAG CTCTTTAATAATTTG TERM 516 476840 - 476821 - f 72 -9.2 -2.65808 | opp_overlap 476827, overlap 476818 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 517 477094 - 477115 + F 70 -8.1 -3.15742 | overlap 477093 ATCCTGCACGACCCA CCATTCTTT CCAC AGAGAATGG GTTTGTTCCTGATAG TERM 518 477404 - 477431 + F 84 -11.4 -3.07307 | opp_overlap 477412, overlap 477393 477409 AGCTGACTGATTCAG CTTAATCACAGC TCAG GCTGAGATTAAG TTAAATCAAAATTTA TERM 519 477598 - 477570 - f 100 -9.8 -4.77757 | opp_overlap 477569 GGCGAAAAACCAAAA CTCTCTATCTTT TATAC AAAGATAGAAAG AGTTTAAACCTTGGT TERM 520 478132 - 478120 - f 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 521 478925 - 478909 - f 85 -9.4 -4.08546 | overlap 478921 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 522 480659 - 480634 - f 72 -9.3 -2.62396 | opp_overlap 480631 480641, overlap 480641 CAGTTTTCCAGATTA TTATTAATCAT TAGC ATGATTAATAA ACAAATTTTGCTTGG TERM 523 480857 - 480844 - f 79 -5.3 -5.03145 | TAAGTCTTTAAAAAA CTACA GGGG TGTAG CTCCAATTGGCAGAG TERM 524 480891 - 480875 - f 81 -10.9 -2.63631 | opp_overlap 480874 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 525 480936 - 480959 + F 90 -8.2 -4.85129 | opp_overlap 480936 GCCATATTTAGAAAA GGCTTATATC GAAA GGTATGAGCC TTTTTGCTATCTGAT TERM 526 481085 - 481062 - f 83 -8.2 -4.45083 | opp_overlap 481062 GCCATATTTAGAAAA GGCTTATATC GAAA GGTATAAGCC TTTTTGCTATCTGCG TERM 527 481062 - 481085 + F 100 -10.4 -4.84527 | opp_overlap 481062 GCCATATTTAGAAAA GGCTTATATC GAAA GGTATAAGCC TTTTTGCTATCTGCG VF_A0421 481259 - 482179 + | putative manganese-dependent inorganic pyrophosphatase TERM 528 482233 - 482202 - T 73 -8.8 -3.20226 | opp_overlap 482207, overlap 482207 ATATTAAGTAATAGA TAAAAGCCCATGCA AATA TGTATGGGCTTTTT TATTGTCTTTAAACC TERM 529 482207 - 482228 + T 100 -10.9 -5.66338 | opp_overlap 482202 482207 AAGTAATAGATAAAA GCCCATGCA AATA TGTATGGGC TTTTTTATTGTCTTT TERM 530 482228 - 482207 - T 93 -8.7 -4.70453 | opp_overlap 482207, overlap 482202 AAGTAATAGATAAAA GCCCATGCA AATA TGTATGGGC TTTTTTATTGTCTTT VF_A1181 482394 - 482242 - | hypothetical protein VF_A0422 483174 - 482650 - | hypothetical protein TERM 531 483333 - 483345 + G 80 -6.3 -4.67904 | opp_overlap 483332 483333 TTCCCAATTAAAAGT GATAC AAG GTATC TTTTTGGGATTAATC TERM 532 483714 - 483703 - g 70 -5.8 -4.3129 | TATGCATTATCAAAA GGCA TACA TGCC TATGGGAAAATAAAG ycaI 483181 - 485484 + | putative recombination protein msbA 485519 - 487267 + | lipid transporter ATP-binding/permease protein TERM 533 487282 - 487295 + G 79 -5.3 -5.00884 | opp_overlap 487282 ATGATTGAAAAAATT TGGTT TGAT AACCA TTTTTTAGGAAAGCT TERM 534 487314 - 487333 + G 77 -10 -3.406 | opp_overlap 487309 TTTAGGAAAGCTATT GTGGCCAT TATT GTGGCCAC TTAGTTACCTATTCA lpxK 487267 - 488253 + | tetraacyldisaccharide 4'-kinase VF_A0426 488255 - 488452 + | cytosolic protein kdsB 488434 - 489183 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 535 489231 - 489205 - T 100 -14.6 -5.71712 | opp_overlap 489205 TTTTATATAAAAAAA GCACATACCGTT TTA AACAGTATGTGC TTTTTTATTTGTATA TERM 536 489205 - 489231 + T 100 -12.4 -5.76237 | opp_overlap 489205 TTTTATATAAAAAAA GCACATACCGTT TTA AACAGTATGTGC TTTTTTATTTGTATA ycbC 490115 - 489252 - | inner membrane protein TERM 537 490185 - 490173 - H 83 -4.8 -5.55769 | opp_overlap 490173 CTTGAGAACAAAAAA CAGC GTCAT GCTG TTACTTCCTTGAGCT smtA 490251 - 491030 + | putative metallothionein SmtA TERM 538 491141 - 491160 + G 72 -3.6 -5.08088 | ATTTCTCATTGAATT TGCCAA CTGAGCGT TTGGCA TTTTTGTTGGCCATT TERM 539 491689 - 491711 + G 70 -7.8 -3.65902 | opp_overlap 491689 491704 TCTAGCTGTGAAAAA TTGCTTGATG AAA CATCAGGTAA TTTACGTGAGCTGCA mukF 491056 - 492393 + | condesin subunit F TERM 540 492575 - 492586 + G 72 -3.6 -5.04597 | opp_overlap 492575, overlap 492569 GCTGAACTGGTAAAG GCTC CAGA GGGC TTTTTCTATCTGCGT mukE 492374 - 493111 + | condesin subunit E TERM 541 494011 - 493966 - g 71 -6.2 -4.1552 | opp_overlap 493978, overlap 494004 GACCGTCGTAAGAAA GTTGAGCAAACATTAACGCA TCGTGT TGAGTTAATGAATGCACAAC GCAGCTTAGTGGATC TERM 542 494331 - 494303 - g 71 -6.7 -4.13014 | opp_overlap 494306, overlap 494305 494307 TTGATAGCCTTAAAA CACAGCTTGCTGA TTA TCAACAAGCGTTG GATATGCAGCAAACT TERM 543 494327 - 494307 - g 77 -10.5 -3.40622 | opp_overlap 494306, overlap 494305 494303 TAGCCTTAAAACACA GCTTGCTGA TTA TCAACAAGC GTTGGATATGCAGCA mukB 493114 - 497580 + | fused chromosome partitioning protein: nucleotide hydrolase TERM 544 497606 - 497627 + F 100 -10.9 -6.06723 | opp_overlap 497606, overlap 497623 ACGTTAATAAGTGAA TGGCAGTCA GAAA TGGCTGCCA TTTTTTTTTGGAAAG TERM 545 497627 - 497606 - f 73 -8.7 -3.29013 | opp_overlap 497606 497623 ACGTTAATAAGTGAA TGGCAGTCA GAAA TGGCTGCCA TTTTTTTTTGGAAAG VF_A0434 497694 - 498311 + | DnaJ-related protein VF_A0435 499667 - 498318 - | two component sensor histidine kinase VF_A0436 500325 - 499648 - | putative transcriptional regulatory protein TERM 546 500333 - 500347 + H 70 -4.3 -4.77165 | ATTTTCATAACTTAC TCTCT TATTT AGAGA TTTTATTATAACAAG VF_A0437 500566 - 500967 + | hypothetical protein TERM 547 501002 - 500975 - T 100 -10.7 -4.33928 | opp_overlap 500972 500975 CATTGTAAAGATAAA GAGCCTTAACG GGGGAA CATTAAGGCTC TGAGTTTACAACATA nagE2 502499 - 501042 - | fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components TERM 548 502610 - 502571 - R 100 -9.4 -4.71426 | opp_overlap 502575, overlap 502573 502574 GGTGGATTAACAAAA GATTGTGCCAACATTAAC TATA GTTAATGTTGGCACTTTA AGAATTAAAATGTGA TERM 549 502608 - 502573 - R 95 -12 -3.97413 | opp_overlap 502575, overlap 502571 502574 TGGATTAACAAAAGA TTGTGCCAACATTAAC TATA GTTAATGTTGGCACTT TAAGAATTAAAATGT TERM 550 502607 - 502574 - R 100 -15.5 -2.97725 | opp_overlap 502575, overlap 502573 502571 GGATTAACAAAAGAT TGTGCCAACATTAAC TATA GTTAATGTTGGCACT TTAAGAATTAAAATG TERM 551 502575 - 502606 + r 100 -19 -3.60971 | opp_overlap 502574 502573 502571 GATTAACAAAAGATT GTGCCAACATTAAC TATA GTTAATGTTGGCAC TTTAAGAATTAAAAT nnrS 503838 - 502654 - | nitrite and/or nitric oxide reductase VF_A0440 504037 - 504891 + | esterase/lipase TERM 552 504983 - 504942 - T 71 -5.2 -4.63486 | opp_overlap 504948, overlap 504948 ATGGGCTGAATAAAA GCTAAAGCCGATGCATAA AAAACA CTATGCATCGGCTTTTTT ATTATCGGAATAACA TERM 553 504977 - 504948 - T 100 -13 -3.99986 | opp_overlap 504948, overlap 504942 TGAATAAAAGCTAAA GCCGATGCATAA AAAACA CTATGCATCGGC TTTTTTATTATCGGA TERM 554 504948 - 504977 + T 100 -12.3 -5.55769 | opp_overlap 504942 504948 TGAATAAAAGCTAAA GCCGATGCATA AAAAACAC TATGCATCGGC TTTTTTATTATCGGA VF_A0441 506022 - 504985 - | hypothetical protein VF_A0442 506224 - 506619 + | hypothetical protein cusC 506795 - 508129 + | copper/silver resistance outer membrane protein cusB 508140 - 509609 + | copper/silver efflux system, membrane fusion protein TERM 555 511648 - 511638 - g 76 -3.2 -5.19251 | CAATAGGAATAAAAA TAGC AGG GCCA GATCTTAATGTTATT cusA 509606 - 512725 + | copper/silver efflux system, membrane component cusF 512823 - 513329 + | copper-binding protein TERM 556 513340 - 513319 - T 81 -6 -4.88918 | GTATGGTAAAGAAAA TTACATTG TAATAC CAATGTAA CCAACTAGATGATAT TERM 557 513386 - 513362 - T 100 -11.5 -4.83269 | opp_overlap 513362 AGATGATATGAAAAA GCGCTAAGG AGGGTGG CCTTAGCGC TTTCTTTCATTAAGA TERM 558 513362 - 513386 + T 100 -11.5 -4.56702 | opp_overlap 513362 AGATGATATGAAAAA GCGCTAAGG AGGGTGG CCTTAGCGC TTTCTTTCATTAAGA VF_A0447 515036 - 513408 - | methyl-accepting chemotaxis protein TERM 559 515073 - 515062 - R 71 -3 -5.09426 | opp_overlap 515062 TGTAATTCGAAAAAA TATC GTTA GATA TGTCTTATTGTTAGA TERM 560 515230 - 515207 - R 95 -8.9 -5.4492 | opp_overlap 515207 TATAGATACAAAAAA GCAGCAAGA GATTAA CCTTGCTGC TTTAATTCGCTATGG TERM 561 515207 - 515230 + r 79 -8.2 -3.94746 | opp_overlap 515207 TATAGATACAAAAAA GCAGCAAG AGATTAAC CTTGCTGC TTTAATTCGCTATGG VF_A0448 516883 - 515255 - | methyl-accepting chemotaxis protein TERM 562 516387 - 516365 - G 71 -4.8 -4.55023 | TGCAATATCAGAAAA CTCATTCACA CGT TGAGAAAGAG CATTGATAGAAGAAA TERM 563 516850 - 516863 + g 79 -5.3 -5.14965 | GTAGTAAAACTTGAA TACGT ATAG ACGTA TTTTTTAATGAAAAT VF_A0449 517312 - 517067 - | hypothetical protein TERM 564 517380 - 517419 + r 70 -3.6 -5.00895 | opp_overlap 517384, overlap 517381 517384 GACTCAAATTGGGAA AGAATACCCTTAGAGATA GTAT TATCTCCAAGGGTATGAG TTTTTATATACTAGG TERM 565 517415 - 517384 - R 100 -15.4 -3.95071 | opp_overlap 517381 517380 517384 CAAATTGGGAAAGAA TACCCTTAGAGATA GTAT TATCTCCAAGGGTA TGAGTTTTTATATAC TERM 566 517384 - 517415 + r 87 -13.2 -2.90854 | opp_overlap 517384, overlap 517381 517380 CAAATTGGGAAAGAA TACCCTTAGAGATA GTAT TATCTCCAAGGGTA TGAGTTTTTATATAC hutH 518955 - 517423 - | histidine ammonia-lyase TERM 567 518418 - 518435 + g 70 -3.5 -4.84274 | gap 1 TTATTGGAGTTAACC CAGCTATT TCT AAT-GCTG TTTTTCCTGTGATTA hutU 520691 - 518997 - | urocanate hydratase hutG 521762 - 520710 - | formimidoylglutamase hutI 522963 - 521737 - | imidazolonepropionase hutC 523848 - 523147 - | histidine utilization repressor VF_A0455 523991 - 524629 + | hypothetical protein TERM 568 524637 - 524669 + T 100 -11.5 -5.2015 | opp_overlap 524642, overlap 524642 GTAAATAACCAATAC AAAAATGGCTAATCG AAG TGATTAGCCATTTTA TTTTTATCTTATTGA TERM 569 524642 - 524664 + T 100 -11.4 -5.40873 | opp_overlap 524642, overlap 524637 TAACCAATACAAAAA TGGCTAATCG AAG TGATTAGCCA TTTTATTTTTATCTT TERM 570 524664 - 524642 - T 100 -10.7 -5.1485 | opp_overlap 524642 524637 TAACCAATACAAAAA TGGCTAATC GAAGT GATTAGCCA TTTTATTTTTATCTT VF_A0456 525170 - 524697 - | peptidyl-prolyl cis-trans isomerase VF_A0457 525830 - 525195 - | putative lipoprotein TERM 571 525909 - 525878 - R 78 -7.4 -4.20981 | opp_overlap 525883 525903, overlap 525883 TGAAGAAAGTAGAAA TGAAATAGGACAAC AAAT GTTGTCCTATTTTG GTAAATATGTGTAAA TERM 572 525904 - 525883 - R 100 -11.7 -4.18693 | opp_overlap 525883 525903, overlap 525878 AAAGTAGAAATGAAA TAGGACAAC AAAT GTTGTCCTA TTTTGGTAAATATGT TERM 573 525883 - 525904 + r 100 -11.7 -4.3014 | opp_overlap 525878 525883, overlap 525903 AAAGTAGAAATGAAA TAGGACAAC AAAT GTTGTCCTA TTTTGGTAAATATGT VF_A0458 526827 - 525937 - | hypothetical protein mfd 530372 - 526917 - | transcription-repair coupling factor TERM 574 529089 - 529101 + g 71 -4.1 -4.83615 | opp_overlap 529093 GGCAGAGCCGATAAC CAAGG TCG CTTTG TTTTTATGCGACATG TERM 575 529304 - 529328 + g 81 -2.8 -5.69262 | TTTCAGGTAGCTCAA GCAGATCG GGATTAAAA CGACCTGC TTTTTCTTTTTCTGG TERM 576 529592 - 529578 - G 70 -2.8 -5.14563 | overlap 529581 TGTCTCATCAAAAAA TAATGG TTG CCAATA TTCGACACCAGCAGG VF_A0461 530957 - 530388 - | hypothetical protein lolC 531125 - 532333 + | outer membrane-specific lipoprotein transporter subunit lolD 532326 - 533042 + | outer membrane-specific lipoprotein transporter subunit TERM 577 533271 - 533261 - g 79 -3.2 -5.41143 | opp_overlap 533270 GAGGGCGTAAAAAAA CCAG TGA CTGA TTGGCAATCTATGAT lolE 533042 - 534286 + | outer membrane-specific lipoprotein transporter subunit LolE TERM 578 534311 - 534333 + F 100 -9.9 -5.75478 | opp_overlap 534311 TTTTAGTAAGATAAA GCCCTTAGA TATAT TCTGAGGGC TTTTTTTATGTGATT TERM 579 534333 - 534311 - f 78 -7.7 -4.23674 | opp_overlap 534311 TTTTAGTAAGATAAA GCCCTTAGA TATAT TCTGAGGGC TTTTTTTATGTGATT VF_A0465 534451 - 535800 + | hypothetical protein TERM 580 535859 - 535870 + F 71 -3 -5.15381 | GACGACATATTGGGA GTTA ATGC TAAC TTTTTTGCCTATATT VF_A0467 537118 - 538164 + | permease zwf 538302 - 539804 + | glucose-6-phosphate 1-dehydrogenase TERM 581 540472 - 540453 - g 74 -5 -4.7254 | opp_overlap 540462 ACCCGGCAGCAAAAA TTCACTCA ACAT TGGGTGAA ACTGAATGGTTTTTA VF_A0469 539801 - 540523 + | 6-phosphogluconolactonase gnd 540560 - 542008 + | 6-phosphogluconate dehydrogenase TERM 582 542063 - 542038 - T 100 -13.4 -5.86976 | opp_overlap 542038 CGATAAAATAAAAAA GCCCCTAACT TGTATG AGTTAGGGGC TTTTTATATCGAATT TERM 583 542038 - 542063 + T 100 -14.1 -4.98522 | opp_overlap 542038 CGATAAAATAAAAAA GCCCCTAACTT GTAT GAGTTAGGGGC TTTTTATATCGAATT yqjA 542747 - 542082 - | inner membrane protein TERM 584 543083 - 543070 - H 72 -2.5 -5.30189 | TATAATATCAAAAAA TATAT TTTT ATATA AACATTGGTAGTCTC VF_A0472 543371 - 543994 + | transporter TERM 585 544075 - 544098 + F 76 -9.7 -2.79074 | opp_overlap 544062, overlap 544066 544062 ATGAAGTAGGGTATT GCCTATTTC TGTTAT GAAATAGGC TGCTCTATATTTGCT TERM 586 544838 - 544806 - g 95 -4.3 -5.80248 | opp_overlap 544807 544814, overlap 544807 GAAGAGATAAAAAAA GTCAAAGATTTTGAT TTA ATTAAAATCTCTGAA GATAAGTTTTTAATT TERM 587 544837 - 544807 - g 75 -7.8 -4.05708 | opp_overlap 544807 544814, overlap 544806 AAGAGATAAAAAAAG TCAAAGATTTTGAT TTA ATTAAAATCTCTGA AGATAAGTTTTTAAT tcpP 544305 - 544916 + | transcriptional regulatory protein TcpP tcpH 544913 - 545302 + | TcpH protein TERM 588 545976 - 545993 + G 81 -2.7 -5.60993 | opp_overlap 545976 TCCCTTGGAAAAAAA GTATCAT ACCA AGGATAC TTTTTTTATAAACCA TERM 589 545993 - 545976 - g 78 -2.7 -5.40072 | opp_overlap 545976 TCCCTTGGAAAAAAA GTATCAT ACCA AGGATAC TTTTTTTATAAACCA TERM 590 546393 - 546359 - g 79 -9.4 -3.67597 | opp_overlap 546363 TGCTTTATTCAATAA CCAAGCCCATATTAAT TTT ATGAATGTGGACTTGG TAGGAATGCCTCTAG VF_A0475 545355 - 547046 + | GGDEF domain-containing protein VF_A0476 547097 - 548389 + | GGDEF domain-containing protein TERM 591 548425 - 548452 + F 72 -2.8 -5.24531 | TTTATCTTATATAGA TAGTCATTTC CCTTTTTT GGGATGACTA TTTTTTATCAAACGT VF_A0477 548510 - 549862 + | hypothetical protein TERM 592 550805 - 550815 + G 73 -5.4 -4.59089 | GTCCGAGTTTGTTAG GTTG GGG CAAC TTTGTTTATACATTA VF_A0478 549862 - 551175 + | N-acetylglucosaminyltransferase TERM 593 551459 - 551445 - g 73 -7.2 -3.99407 | opp_overlap 551445 ATAAATGTCAAAGAA GGTAAT CAG ATTACC TATGGTCGGAATGTT VF_A0479 551181 - 552224 + | hypothetical protein VF_A0480 552293 - 552541 + | hypothetical protein VF_A0481 552592 - 554235 + | methyl-accepting chemotaxis protein TERM 594 554273 - 554249 - T 100 -13 -4.24075 | opp_overlap 554249 AGTGATGAAGATAAA GCTATAAGGC GTGGT GCCTTATAGC TTTTTTATTTACCGA TERM 595 554249 - 554273 + T 100 -13.7 -5.63517 | opp_overlap 554249 AGTGATGAAGATAAA GCTATAAGGCG TGG TGCCTTATAGC TTTTTTATTTACCGA VF_A0482 555517 - 554294 - | sodium/glutamate symporter TERM 596 555650 - 555621 - R 83 -6.6 -4.84359 | TCACTGTCATAAAAA GTTCATAATTCA AATGAG TGAATAATGAAC GACTTATGACAGTAA VF_A0483 556770 - 555673 - | rod shape-determining protein RodA TERM 597 556885 - 556914 + r 83 -8 -4.42788 | opp_overlap 556885 556888 CCGTAATGAAAGGGA TAACCCAACATT TCGCTT AATGATGGGTTA TTTTATGCAGTTAGG VF_A0484 558687 - 556957 - | ribosomal large subunit pseudouridine synthase A VF_A0485 560368 - 558668 - | ribosomal large subunit pseudouridine synthase A TERM 598 558742 - 558760 + g 79 -3.2 -5.50499 | ACAAATAACCTGCAT GCAAAT GTAAGCG ATTTGC TTTTTTTCCATATAA TERM 599 560445 - 560412 - R 73 -8.3 -3.55202 | gap 1, overlap 560410 560413 TAGGGGTAAAGAAGA GTGC-GTGGTTCGATA TTA TATCAAACCACAGCAA TACCAATGACCATTA TERM 600 560444 - 560413 - R 84 -11.8 -2.72639 | gap 1, overlap 560412 560410 AGGGGTAAAGAAGAG TGC-GTGGTTCGATA TTA TATCAAACCACAGCA ATACCAATGACCATT VF_A0486 560739 - 560503 - | hypothetical protein TERM 601 560841 - 560814 - R 100 -10.7 -4.90471 | opp_overlap 560814 ATGCAAAATAGAAAA TCCGAAATAGC GATTAA GCCATTTCGGA TTTGGTTTTAGCCCT TERM 602 560814 - 560841 + r 85 -8.5 -4.20136 | opp_overlap 560814 ATGCAAAATAGAAAA TCCGAAATAGC GATTAA GCCATTTCGGA TTTGGTTTTAGCCCT ompU2 561808 - 560885 - | outer membrane protein U paralog, OmpU2 TERM 603 561850 - 561832 - R 73 -8.2 -3.52472 | overlap 561828 ATACCCTTAAATTAA CCAAAACA CCC CGTTTTGG CCTAGTTATTTGCTT TERM 604 561969 - 561928 - R 74 -6.1 -4.4727 | opp_overlap 561932 TTAACATTTATAAAA CTAATGTGTCATCTG TGTGACAACGTT GAGATGACACATTAG TAGGAGAAAGGATTA VF_A0488 562857 - 561982 - | hypothetical protein VF_A0489 563955 - 563023 - | LysR family transcriptional regulator TERM 605 564011 - 563999 - H 71 -7.7 -3.65224 | overlap 563977 ATTTGAGTCTAATAA TTCCC TGT GGGAA CTGCAATGTATTTTT VF_A0490 564064 - 565059 + | soluble lytic murein transglycosylase VF_A0491 565069 - 566073 + | soluble lytic murein transglycosylase TERM 606 566119 - 566086 - T 82 -9.7 -3.60638 | opp_overlap 566092, overlap 566092 TAAATGAAGTAAATA CAAAAAGGTCTGCGT TAAA ATGCAGACCTTTCTA ATAAAGATTTTAATT TERM 607 566092 - 566113 + T 93 -10.9 -3.96892 | opp_overlap 566086 566092 AAGTAAATACAAAAA GGTCTGCGT TAAA ATGCAGACC TTTCTAATAAAGATT TERM 608 566113 - 566092 - T 95 -8.7 -5.23644 | opp_overlap 566092, overlap 566086 AAGTAAATACAAAAA GGTCTGCGT TAAA ATGCAGACC TTTCTAATAAAGATT anmK 567248 - 566145 - | anhydro-N-acetylmuramic acid kinase TERM 609 567483 - 567508 + G 70 -3.3 -4.93877 | gap 1, overlap 567487 AGAGCGTGAGTTACT TCAG-CACCCAA CTG TTGGGGGATTGA TTTTATTTGCTCGAA nagZ 567421 - 568416 + | beta-hexosaminidase TERM 610 568443 - 568479 + T 100 -13.1 -4.43221 | opp_overlap 568448, overlap 568448 TATTTGGATGAAATA AAAAAGCCCCGATGTTG ATT TAACAGCGGGGCTTTTA TTTTATGCGATGTTT TERM 611 568448 - 568474 + T 100 -13 -5.18371 | opp_overlap 568448, overlap 568443 GGATGAAATAAAAAA GCCCCGATGTTG ATT TAACAGCGGGGC TTTTATTTTATGCGA TERM 612 568474 - 568448 - T 100 -12.3 -5.68438 | opp_overlap 568443 568448 GGATGAAATAAAAAA GCCCCGATGTT GATTT AACAGCGGGGC TTTTATTTTATGCGA pykA 569942 - 568497 - | pyruvate kinase II ygcF 570724 - 570044 - | hypothetical protein dgsA 570908 - 572122 + | DNA-binding transcriptional repressor TERM 613 572143 - 572173 + T 100 -9.8 -5.1244 | opp_overlap 572148, overlap 572148 CACCGTAAAGTAATA AAAAAGAGCAGCGA ATT TGGCTGCTCTTTTC TTTTTATATTGATGG TERM 614 572148 - 572168 + T 100 -9.7 -5.40873 | opp_overlap 572148, overlap 572143 TAAAGTAATAAAAAA GAGCAGCGA ATT TGGCTGCTC TTTTCTTTTTATATT TERM 615 572168 - 572148 - T 100 -9.7 -5.59655 | opp_overlap 572148 572143 TAAAGTAATAAAAAA GAGCAGCGA ATT TGGCTGCTC TTTTCTTTTTATATT VF_A0497 573204 - 572200 - | L-allo-threonine aldolase TERM 616 573826 - 573838 + G 80 -7.7 -4.44914 | ACTCAAGGTTACTTG CCTGA TGC TCAGG TTGTTTTCTTAGATG ravA 573487 - 575136 + | MoxR-like ATPase, regulatory ATPase variant A, RavA TERM 617 575519 - 575506 - g 76 -6.7 -4.3953 | opp_overlap 575502, overlap 575502 GCTAATGATAACAAA GGGTT AATG AACCC TATGTTCCCTCGATT TERM 618 576376 - 576364 - g 71 -4.9 -4.56597 | CCCGTGCTGGAAAAA TCAAT TCA ATTGA TGCATGGGGATAAAT viaA 575155 - 576603 + | hypothetical protein VF_A0500 576846 - 576604 - | hypothetical protein TERM 619 576881 - 576862 - R 93 -9.3 -4.57073 | opp_overlap 576861 576860, overlap 576842 TATTTCTCCGAAAAA GGATGGC ACTAAA GCCATCC AATATTAATTATTTT VF_A0501 577327 - 576890 - | hypothetical protein VF_A0502 577536 - 578162 + | outer membrane protein TERM 620 578203 - 578168 - T 100 -16.4 -2.74523 | opp_overlap 578175, overlap 578175 TCACTGGTAACAGTA TAAAAAATGGCCCTCA TTAT TGAGGGCCATTTTGTA GATATTTATAAATTA TERM 621 578175 - 578196 + T 100 -14.5 -4.48877 | opp_overlap 578175 578168 TAACAGTATAAAAAA TGGCCCTCA TTAT TGAGGGCCA TTTTGTAGATATTTA TERM 622 578196 - 578175 - T 100 -14.5 -5.36965 | opp_overlap 578175, overlap 578168 TAACAGTATAAAAAA TGGCCCTCA TTAT TGAGGGCCA TTTTGTAGATATTTA creA 578728 - 578216 - | CreA family protein VF_A0504 579102 - 579524 + | hypothetical protein TERM 623 579535 - 579550 + F 95 -9 -5.28778 | opp_overlap 579535 TTTAATTTAAATAAA GGATGG GGTA CCATCC TTTTTTGTAGGTGAT TERM 624 579550 - 579535 - f 89 -9 -4.50159 | opp_overlap 579535 TTTAATTTAAATAAA GGATGG GGTA CCATCC TTTTTTGTAGGTGAT TERM 625 579609 - 579595 - g 79 -8.6 -4.09963 | TTTTAATAAGAATAA GCTAAC TTG GTTAGC AGAGCAGGTGAATGT VF_A0505 579566 - 580051 + | hypothetical protein TERM 626 580430 - 580420 - g 71 -4 -4.97824 | AAAACGCAAACAAAA CTTT TCC AAAG CTACCTATCGTTGCT TERM 627 581106 - 581090 - g 71 -3.7 -4.99638 | ATACTTATATAAAAA CAGAAAT ATT ATATCTG TAACGGCTCTGCTGA VF_A0506 580074 - 581819 + | two component response regulator TERM 628 581873 - 581897 + T 100 -12.9 -5.55769 | opp_overlap 581873 TTAATATAAAAAAAA GCCCTAACTCT ATG AGAGGTAGGGC TTTTTTCTTATCCGA TERM 629 581897 - 581873 - T 100 -12.9 -6.10295 | opp_overlap 581873 TTAATATAAAAAAAA GCCCTAACTCT ATG AGAGGTAGGGC TTTTTTCTTATCCGA gltS 583128 - 581905 - | glutamate transporter TERM 630 583253 - 583263 + r 73 -4 -5.1356 | overlap 583245 TCTGATTTCAGGGAC TGAT AGT ATCA TTTTTATTAATAGAG VF_A0508 584344 - 583349 - | hypothetical protein TERM 631 584469 - 584502 + r 100 -13.5 -4.20025 | gap 1, opp_overlap 584469 584473, overlap 584473 TTATTCCAGATAAAA TAAACACGCTACATAA ACG TTA-GTAGCGTGTTTA TTTATCTTAGAACTT TERM 632 584502 - 584469 - R 100 -13.5 -4.54047 | gap 1, opp_overlap 584469 584473, overlap 584473 TTATTCCAGATAAAA TAAACACGCTACATAA ACG TTA-GTAGCGTGTTTA TTTATCTTAGAACTT TERM 633 584498 - 584473 - R 100 -9.9 -4.83243 | gap 1, opp_overlap 584473 584469, overlap 584469 TCCAGATAAAATAAA CACGCTACATAA ACG TTA-GTAGCGTG TTTATTTATCTTAGA TERM 634 584473 - 584498 + r 100 -9.9 -4.68511 | gap 1, opp_overlap 584469 584473, overlap 584469 TCCAGATAAAATAAA CACGCTACATAA ACG TTA-GTAGCGTG TTTATTTATCTTAGA VF_A0509 586347 - 584521 - | multidrug resistance ABC transporter ATP-binding and permease protein TERM 635 584736 - 584762 + g 76 -11 -2.55999 | overlap 584735 584739 CTTGGATCGCTGCTT CAACTTCAGAAT CTA ATGCTGAAGTTG CTTCATCTAAAATAA VF_A0510 586538 - 587506 + | low-affinity zinc transport protein TERM 636 587525 - 587557 + T 75 -4.8 -4.91511 | opp_overlap 587532, overlap 587531 587532 ATATTGATGTATGAA TAAAAAAGGGGAGC GTAAA GCTCCCCGTTTGCA TTTTTGTAATGGAAT TERM 637 587531 - 587551 + T 79 -8.2 -4.03085 | opp_overlap 587532, overlap 587525 587532 ATGTATGAATAAAAA AGGGGAGC GTAAA GCTCCCCG TTTGCATTTTTGTAA TERM 638 587550 - 587532 - T 100 -11.7 -5.5112 | opp_overlap 587532 587531 587525 TGTATGAATAAAAAA GGGGAGC GTAAA GCTCCCC GTTTGCATTTTTGTA TERM 639 587532 - 587550 + T 84 -11.7 -3.00767 | opp_overlap 587532, overlap 587531 587525 TGTATGAATAAAAAA GGGGAGC GTAAA GCTCCCC GTTTGCATTTTTGTA VF_A0511 588518 - 587574 - | ribosomal biogenesis GTPase VF_A0512 588898 - 589203 + | Phage integrase family protein VF_A0513 589236 - 589418 + | DNA integration/recombination/invertion protein TERM 640 589513 - 589536 + T 100 -10.4 -4.57503 | opp_overlap 589513 TATAGCTTAAAGAAA GTAGGTAGAG TTAA TTCTACCTAC TTTATTATTATATTC TERM 641 589536 - 589513 - T 100 -9.7 -4.45117 | opp_overlap 589513 TATAGCTTAAAGAAA GTAGGTAGA GTTAAT TCTACCTAC TTTATTATTATATTC VF_A0514 590497 - 589544 - | hypothetical protein TERM 642 589640 - 589626 - G 77 -5 -4.91712 | opp_overlap 589626, overlap 589616 TTCAACCCATAAAAA TGAGAA ATA TCCTCA AGTTTACTTTTTGAA TERM 643 590507 - 590517 + H 74 -5.4 -4.75356 | AGGCATTCTAGTAAT CTAC TAA GTAG TTTTTGCGTGTGTTT TERM 644 590762 - 590772 + H 73 -4 -5.02476 | opp_overlap 590762 590769 AACAATAGGATATTA TAAG TTA CTTA TTTTTTAAAAAATAT TERM 645 590854 - 590833 - H 83 -10.3 -3.24425 | opp_overlap 590825, overlap 590825 TATATAACCTATTAA TACTAGGTT CCCT AACCTAGTA ATAGAGTAACCTCAA yagK 590932 - 591585 + | prophage protein TERM 646 591574 - 591628 + T 75 -8.7 -3.41581 | opp_overlap 591590 591592, overlap 591583 591587 591590 591592 CGAAGCTTTGGTTGT TCTCTGCGATAAAAAATAGAGGAGC ATTAC GCTCCTCTGTAATTTATTTCAGTGA TTAATTAGTGCATTC TERM 647 591583 - 591619 + T 73 -7.4 -3.72642 | opp_overlap 591590 591592, overlap 591574 591587 591590 591592 GGTTGTTCTCTGCGA TAAAAAATAGAGGAGC ATTAC GCTCCTCTGTAATTTA TTTCAGTGATTAATT TERM 648 591590 - 591612 + T 79 -9.9 -3.19523 | opp_overlap 591590 591592, overlap 591587 591583 591574 591592 CTCTGCGATAAAAAA TAGAGGAGC ATTAC GCTCCTCTG TAATTTATTTCAGTG TERM 649 591612 - 591590 - T 90 -8.4 -5.24129 | opp_overlap 591590 591587 591583 591574 591592, overlap 591592 CTCTGCGATAAAAAA TAGAGGAGCA TTA CGCTCCTCTG TAATTTATTTCAGTG TERM 650 591592 - 591610 + T 80 -10.3 -3.14807 | opp_overlap 591590 591592, overlap 591590 591587 591583 591574 CTGCGATAAAAAATA GAGGAGC ATTAC GCTCCTC TGTAATTTATTTCAG TERM 651 591610 - 591592 - T 100 -11 -4.25873 | opp_overlap 591592 591590 591587 591583 591574, overlap 591590 CTGCGATAAAAAATA GAGGAGCA TTA CGCTCCTC TGTAATTTATTTCAG VF_A0516 593068 - 591629 - | putative lipoprotein VF_A0517 593851 - 593087 - | hypothetical protein TERM 652 594049 - 594069 + r 81 -9.8 -3.35679 | opp_overlap 594049 ACTGGTTTGAATTCA CTGAGGTT GTAGA AACCTCAG TTATAGATAGACAGA TERM 653 594069 - 594049 - R 75 -9.8 -2.52543 | opp_overlap 594049 ACTGGTTTGAATTCA CTGAGGTT GTAGA AACCTCAG TTATAGATAGACAGA VF_A0518 594429 - 594094 - | hypothetical protein TERM 654 594470 - 594498 + r 100 -11.8 -4.33274 | opp_overlap 594468 594471, overlap 594471 GGAGTAAAGATAATG ACGAGTGAGACA AATAG TGTCTCACTCGA TTTTGGTCATCTAAA TERM 655 594471 - 594497 + r 100 -15.3 -3.19482 | opp_overlap 594471 594468, overlap 594470 GAGTAAAGATAATGA CGAGTGAGACA AATAG TGTCTCACTCG ATTTTGGTCATCTAA TERM 656 594497 - 594471 - R 100 -15.3 -3.00128 | opp_overlap 594470 594471, overlap 594468 GAGTAAAGATAATGA CGAGTGAGACA AATAG TGTCTCACTCG ATTTTGGTCATCTAA VF_A0519 595799 - 594900 - | hypothetical protein TERM 657 595619 - 595639 + g 76 -6.9 -4.46212 | opp_overlap 595623 GTTTATCTCCATTTT CAAATGTCA CGG TGACATTGG TTTTGTCGTAACCGC TERM 658 595859 - 595840 - R 100 -11.4 -5.76633 | opp_overlap 595838 TTAGACATAAAAAAA CCGCAACC AAAA GGCTGCGG CATGATGTGTTTGAT VF_A0520 596362 - 595895 - | hypothetical protein VF_A0521 596870 - 596427 - | hypothetical protein VF_A0522 597343 - 596870 - | DNA repair protein RadC VF_A0523 597490 - 597681 + | DNA-binding protein VF_A0524 597774 - 598220 + | ribonuclease H TERM 659 598542 - 598531 - f 89 -3 -5.81412 | opp_overlap 598531 TTTATGTAAAAAAAA TCAA TTTA TTGA TACTTTCACATATAG VF_A0525 598645 - 599412 + | AraC family transcriptional regulator TERM 660 600041 - 600017 - g 87 -5.1 -5.42975 | opp_overlap 600019 600022, overlap 600019 GGATAGAAAGAAAAA CACAACTTAAC TTG ATTAAGTTGTT TGATGATAATGCAAT TERM 661 600039 - 600019 - g 80 -7.7 -4.33302 | opp_overlap 600019 600022, overlap 600017 ATAGAAAGAAAAACA CAACTTAAC TTG ATTAAGTTG TTTGATGATAATGCA VF_A0526 599443 - 600312 + | GGDEF domain-containing protein TERM 662 601130 - 601150 + G 71 -4.1 -4.88918 | TCTCGTTCTTTTTCT TAGTAAC TTTAATT GTTACTA TTTTGTTTACAATGA VF_A0527 600595 - 602205 + | methyl-accepting chemotaxis protein TERM 663 602249 - 602222 - f 100 -13.6 -3.62816 | opp_overlap 602219 602222 TAAATATAACTAGAA TCAGCTCTATCG ATAT CGATAGAGCTAA TAAATTTAATACCAA TERM 664 602222 - 602249 + F 83 -11.4 -2.67803 | opp_overlap 602222, overlap 602219 TAAATATAACTAGAA TCAGCTCTATCG ATAT CGATAGAGCTAA TAAATTTAATACCAA VF_A0528 602634 - 604277 + | methyl-accepting chemotaxis protein pnuC 604839 - 605573 + | nicotinamide mononucleotide transporter VF_A0530 605570 - 606304 + | uridine phosphorylase VF_A0531 606435 - 607118 + | hypothetical protein TERM 665 607121 - 607155 + F 100 -7.9 -5.95166 | opp_overlap 607121 607127 607128, overlap 607128 AGGACATGAATAGAA CATAAACCCCACATC GTAAA GGTGTGGGCTTTCTG TTTTTTTTGCTTGGG TERM 666 607128 - 607148 + F 75 -9 -3.43017 | opp_overlap 607128 607127 607121, overlap 607121 GAATAGAACATAAAC CCCACATC GTAAA GGTGTGGG CTTTCTGTTTTTTTT VF_A0532 607308 - 607451 + | hypothetical protein TERM 667 607464 - 607479 + F 72 -6.1 -4.34263 | opp_overlap 607464 607458, overlap 607458 TAGAAATGATAAAAA TGGGC CTTTGT GCCCA TTTATATTGTTAAAA TERM 668 607479 - 607464 - f 83 -6.1 -5.06735 | opp_overlap 607458 607464, overlap 607458 TAGAAATGATAAAAA TGGGC CTTTGT GCCCA TTTATATTGTTAAAA VF_A0533 607543 - 609771 + | hypothetical protein TERM 669 609864 - 609831 - f 100 -15.5 -4.77036 | opp_overlap 609831 TTCCACCACTAAAAA CATAAAGCCCATATC GAAA GGTATGGGCTTTATG TTTTTTAGCTTTAAA TERM 670 609831 - 609864 + F 100 -17.7 -5.22039 | opp_overlap 609831 TTCCACCACTAAAAA CATAAAGCCCATATC GAAA GGTATGGGCTTTATG TTTTTTAGCTTTAAA TERM 671 610051 - 610040 - f 79 -4.4 -5.252 | TATTGTCATAAAAAA CCTT ACTG AAGG TAACACTAAACATGA VF_A0534 610063 - 610233 + | hypothetical protein hsdM 610230 - 611711 + | DNA methylase M TERM 672 611871 - 611860 - g 72 -4.4 -4.76041 | TACAGTGACTAAAAA CCTA CCGC TAGG TGTAACCTTACTGCT VF_A0536 611708 - 613579 + | hypothetical protein TERM 673 614541 - 614528 - g 74 -3.8 -5.15381 | AACACATTCAAAAAA GCCT TGATTT AGGC AATGGTCGTTCAATT VF_A0537 613576 - 615042 + | type I restriction-modification system methylation subunit VF_A0538 615042 - 616262 + | type I restriction-modification system specificity subunit TERM 674 616299 - 616285 - g 71 -7.2 -3.93556 | opp_overlap 616288 ATTTACCGAATTAAA TAGTGT GGA ACACTA CATCATTCATCAAAT TERM 675 616609 - 616583 - g 70 -9.5 -2.56185 | overlap 616582 616580 AAAGCCAATGAAGAG TTTTTCGCCTG GATGA CGGGCGAAAAA ACAATGCCCTTTGGC VF_A0539 616265 - 619258 + | type I restriction-modification system restriction subunit VF_A0540 619283 - 620608 + | hypothetical protein TERM 676 621198 - 621182 - g 71 -6.6 -4.06562 | AAGCTGAAGCAGAAA TACCAG TGTCT CTGGTA AGAGTGCAAAAAAGC TERM 677 621434 - 621424 - g 81 -6.8 -4.82901 | opp_overlap 621424 CTCCCTTCACAAAAA TCCG CTT CGGA TGGTGTTCATGCTGT TERM 678 621853 - 621865 + G 75 -10.5 -3.12999 | ACTTCTACATGGTTT CGCCC TGA GGGCG TTAGATATGACGTAA VF_A0541 621001 - 622650 + | hypothetical protein TERM 679 626466 - 626456 - g 81 -5.4 -5.12707 | GTAAACGGGAAAAAA CTTC GAG GAAG GCTGGTTCAGCAGAG VF_A0542 622655 - 626719 + | superfamily I DNA helicase VF_A0543 626716 - 627219 + | hypothetical protein VF_A0544 627213 - 627479 + | hypothetical protein VF_A0545 627490 - 628893 + | putative cytoplasmic protein TERM 680 628919 - 628902 - g 77 -8.5 -3.86944 | overlap 628895 TTTATAACCACGAAA TTTCACG CCTT CGTGAAA CCAAAAATAGAGATG VF_A0546 628883 - 629860 + | hypothetical protein VF_A0547 629853 - 630443 + | hypothetical protein TERM 681 630669 - 630695 + T 87 -12.3 -3.02096 | opp_overlap 630672, overlap 630664 630671 TTTAATTTATTTAAT GAAGAGGCAGC TTTAC GCTGCCTCATC TATATAATTACTCCA TERM 682 630671 - 630693 + T 74 -9.1 -3.06361 | opp_overlap 630672, overlap 630669 630664 TAATTTATTTAATGA AGAGGCAGC TTTAC GCTGCCTCA TCTATATAATTACTC TERM 683 630692 - 630672 - T 93 -12.6 -3.38088 | opp_overlap 630671 630669 630664 AATTTATTTAATGAA GAGGCAGC TTTAC GCTGCCTC ATCTATATAATTACT intA 631880 - 630681 - | phage family integrase TERM 684 631513 - 631523 + g 85 -4 -5.63103 | TATGAATGCGCAGGA GAAA CCG TTTC TTTTTTTCGTTCAAA TERM 685 632193 - 632208 + r 87 -10.4 -3.79043 | opp_overlap 632193 TTAGTATGAAAAAAA CGGCCT AAAT AGGCCG TTTAAATTAATCCTA TERM 686 632208 - 632193 - R 100 -10.4 -5.55664 | opp_overlap 632193 TTAGTATGAAAAAAA CGGCCT AAAT AGGCCG TTTAAATTAATCCTA VF_A0549 632686 - 632237 - | putative lipoprotein VF_A0550 634810 - 632699 - | putative cytoplasmic protein TERM 687 633726 - 633743 + g 77 -7.7 -4.23707 | GGAACGATTTGTACG CCACTCA CTAT TGGGTGG TTTGTTAAAATTTGT VF_A0551 635925 - 635125 - | EAL domain-containing protein TERM 688 636072 - 636038 - R 83 -8 -4.29326 | opp_overlap 636039 636044, overlap 636039 636044 TTCAAAGTTAAGAAA TTAGAAGCCCATTTAC ATC ATAAATGGGCTTTTAT TAGTTACGCTGTCAC TERM 689 636071 - 636039 - R 87 -11.5 -3.16873 | opp_overlap 636039 636044, overlap 636038 636044 TCAAAGTTAAGAAAT TAGAAGCCCATTTAC ATC ATAAATGGGCTTTTA TTAGTTACGCTGTCA TERM 690 636039 - 636071 + r 93 -13 -3.36785 | opp_overlap 636038 636039 636044, overlap 636044 TCAAAGTTAAGAAAT TAGAAGCCCATTTA CATCA TAAATGGGCTTTTA TTAGTTACGCTGTCA TERM 691 636066 - 636044 - R 90 -11.4 -3.68962 | opp_overlap 636044 636039, overlap 636039 636038 GTTAAGAAATTAGAA GCCCATTTAC ATC ATAAATGGGC TTTTATTAGTTACGC TERM 692 636044 - 636066 + r 100 -10.7 -4.78572 | opp_overlap 636039 636038 636044, overlap 636039 GTTAAGAAATTAGAA GCCCATTTA CATCA TAAATGGGC TTTTATTAGTTACGC VF_A0552 636903 - 636076 - | putative cytoplasmic protein VF_A0553 637049 - 638431 + | ATP-dependent RNA helicase TERM 693 638476 - 638501 + T 100 -12.7 -5.44119 | opp_overlap 638476 ATCAGAAATAAAAAA TGACAAGGGAG CGAA CTTCCTTGTCA TTTTTTTAAACTAAA TERM 694 638501 - 638476 - T 100 -10.5 -5.73978 | opp_overlap 638476 ATCAGAAATAAAAAA TGACAAGGGAG CGAA CTTCCTTGTCA TTTTTTTAAACTAAA VF_A0554 638858 - 638577 - | putative cytoplasmic protein VF_A0555 639732 - 638920 - | phosphate-binding protein VF_A0556 640595 - 639795 - | hypothetical protein TERM 695 639939 - 639953 + g 73 -5.7 -4.54727 | overlap 639931 TCTTAGTTGTGTTGC CGCAT AATTA ATGCG TTTTACTTTAACCAA TERM 696 640355 - 640392 + g 76 -7.3 -4.30635 | gap 1, opp_overlap 640353 GAAATAAAGCAACGT CGATAACAACAGATTGTG CTT TAAAAT-TGTTGTTATCG TTTGTCATTTTTATT sgrR 640722 - 642434 + | DNA-binding transcriptional regulator VF_A0558 643447 - 642482 - | coproporphyrinogen III oxidase VF_A0559 643535 - 643801 + | hypothetical protein TERM 697 643791 - 643811 + F 72 -9.1 -2.7264 | opp_overlap 643791, overlap 643790 TAGGTGGTAAAGTCA TGGCAAAGT AAG ACTTTGTCA ATTTAAGCCCACTTT VF_A0560 643933 - 645378 + | two component sensor histidine kinase VF_A0561 645353 - 646009 + | two component response regulator VF_A0562 646014 - 646922 + | hypothetical protein VF_A0563 646922 - 647083 + | hypothetical protein TERM 698 647097 - 647115 + F 89 -7.4 -5.38951 | opp_overlap 647097 AATTATTATTTTAAA GCCGAG CTAACCC CTCGGC TTTTTTGTATGCATT TERM 699 647115 - 647097 - f 71 -7.4 -3.6284 | opp_overlap 647097 AATTATTATTTTAAA GCCGAG CTAACCC CTCGGC TTTTTTGTATGCATT VF_A0564 647250 - 648449 + | TraF protein mog 648528 - 649064 + | molybdenum cofactor biosynthesis protein TERM 700 649098 - 649069 - T 95 -12.4 -3.71308 | opp_overlap 649075, overlap 649075 AAGCAAAATAACCAA TAAAAAGCCAAC GTAACT GTTGGCTTTTTA ACATCCTTTTTCTTT TERM 701 649075 - 649092 + T 83 -7.7 -4.652 | opp_overlap 649075 649069 AATAACCAATAAAAA GCCAACG TAAC TGTTGGC TTTTTAACATCCTTT TERM 702 649092 - 649075 - T 89 -7 -5.23396 | opp_overlap 649075, overlap 649069 AATAACCAATAAAAA GCCAAC GTAACT GTTGGC TTTTTAACATCCTTT VF_A0566 649320 - 649096 - | hypothetical protein TERM 703 649422 - 649406 - H 74 -5.2 -4.78077 | TCGAATGAAAATAAA CATTCA AAGTA TGAATG GTAATTGATGAAGTT ydaM 649637 - 651601 + | GGDEF domain-containing protein VF_A1183 651702 - 651782 + | hypothetical protein TERM 704 651852 - 651826 - T 75 -8.2 -3.84825 | opp_overlap 651826 TGTATCTATATTAAA CCAAGATAAA TCAAGTG TTTATCTTGG TTTTTTTATGCCTCA TERM 705 651826 - 651852 + T 95 -8.9 -5.64274 | opp_overlap 651826 TGTATCTATATTAAA CCAAGATAAAT CAAGT GTTTATCTTGG TTTTTTTATGCCTCA yfiQ 654569 - 651891 - | fused acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit TERM 706 654688 - 654678 - H 84 -4 -5.73672 | AAATAACCAAAAAAA TCAA GTA TTGA GCACAAAGATATGAG VF_A0569 654794 - 655354 + | hypothetical protein TERM 707 655357 - 655388 + F 90 -8.1 -4.91109 | opp_overlap 655361, overlap 655358 655361 TAAGTTAAATTAATC ATAATCGGTGCAT CTAAAT ATGCACCGATTGC TTTTTATAGTGAAAA TERM 708 655358 - 655387 + F 90 -11.6 -3.54183 | opp_overlap 655361, overlap 655357 655361 AAGTTAAATTAATCA TAATCGGTGCAT CTAAAT ATGCACCGATTG CTTTTTATAGTGAAA TERM 709 655384 - 655361 - f 89 -11.1 -3.58914 | opp_overlap 655358 655357 655361 TTAAATTAATCATAA TCGGTGCAT CTAAAT ATGCACCGA TTGCTTTTTATAGTG TERM 710 655361 - 655384 + F 90 -11.1 -3.89607 | opp_overlap 655361, overlap 655358 655357 TTAAATTAATCATAA TCGGTGCAT CTAAAT ATGCACCGA TTGCTTTTTATAGTG TERM 711 656078 - 656091 + G 77 -8.1 -4.15657 | opp_overlap 656077 CCAGGTGAAGTAACG GCACC AGAC GGTGC TTTCTATACTTATGA ddlA 655406 - 656398 + | D-alanyl-alanine synthetase A TERM 712 656411 - 656442 + T 93 -9.6 -4.18197 | opp_overlap 656419, overlap 656419 TAAGTTTGGTTTAAA TGGAAAAAGCCTGA TAAT TCAGGCTTTTTTTG TTTTAAATACAGACT TERM 713 656434 - 656419 - T 93 -9 -4.81249 | opp_overlap 656411 656419 GTTTAAATGGAAAAA GCCTGA TAAT TCAGGC TTTTTTTGTTTTAAA TERM 714 656419 - 656434 + T 100 -9 -6.09196 | opp_overlap 656419, overlap 656411 GTTTAAATGGAAAAA GCCTGA TAAT TCAGGC TTTTTTTGTTTTAAA VF_A0571 657343 - 656429 - | DNA integration/recombination/invertion protein VF_A0572 657487 - 657837 + | minor tail protein yciH 657877 - 658188 + | translation initiation factor Sui1 TERM 715 658207 - 658258 + T 74 -6.2 -4.4767 | gap 1, opp_overlap 658209, overlap 658209 658255 AACGTTGTTAGAGTT AAGCTAATAATCAAACGATGAATAC GAA GTATT-ATTGAATGATTATTAGCTA TTTTATGGTAAATAG TERM 716 658209 - 658256 + T 79 -8.8 -3.84585 | gap 1, opp_overlap 658209, overlap 658207 658255 CGTTGTTAGAGTTAA GCTAATAATCAAACGATGAATAC GAA GTATT-ATTGAATGATTATTAGC TATTTTATGGTAAAT TERM 717 658485 - 658446 - T 100 -11.7 -5.60993 | opp_overlap 658445 CTGTTTATAAAAAAA CCATGATGGAACACC-GCA CTCA TACTGGTGT-CCATCATGG GTAATTATCAACACA TERM 718 658553 - 658533 - T 77 -5.6 -5.01535 | opp_overlap 658533 658531 658548 CGATAATTATAAAAA GATTTATT TGGCT AATAAATC TCTATTTATACTCTC TERM 719 658627 - 658648 + T 79 -8.1 -3.92324 | opp_overlap 658625 658627 GCAAAAAATGCAATA TTGATACGC GCTA GCGTATTAA TTTAATCTTACGAGC VF_A0574 658824 - 658717 - | hypothetical protein TERM 720 659001 - 659047 + r 73 -8.9 -3.28712 | gap 1, opp_overlap 659005 659021 659023, overlap 659004 AAGTCTGTTTATAAA AAAACCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGGGTAA TTATCAACACAAGGC TERM 721 659004 - 659044 + r 95 -15 -2.82623 | gap 1, opp_overlap 659005 659021 659023, overlap 659001 TCTGTTTATAAAAAA ACCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGGG TAATTATCAACACAA TERM 722 659043 - 659005 - R 100 -18.5 -5.60993 | gap 1, opp_overlap 659004 659001, overlap 659021 659023 CTGTTTATAAAAAAA CCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGG GTAATTATCAACACA TERM 723 659111 - 659091 - R 77 -5.6 -5.01535 | opp_overlap 659091 659089 659106 CGATAATTATAAAAA GATTTATT TGGCT AATAAATC TCTATTTATACTCTC TERM 724 659185 - 659206 + r 79 -8.1 -3.92324 | opp_overlap 659185 659183 GCAAAAAATGCAATA TTGATACGC GCTA GCGTATTAA TTTAATCTTACGAGC VF_A0575 659382 - 659275 - | hypothetical protein TERM 725 659559 - 659605 + r 73 -8.9 -3.28712 | gap 1, opp_overlap 659563 659579 659581, overlap 659562 AAGTCTGTTTATAAA AAAACCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGGGTAA TTATCAACACAAAGG TERM 726 659562 - 659602 + r 95 -15 -2.82623 | gap 1, opp_overlap 659563 659579 659581, overlap 659559 TCTGTTTATAAAAAA ACCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGGG TAATTATCAACACAA TERM 727 659601 - 659563 - R 100 -18.5 -5.60993 | gap 1, opp_overlap 659562 659559, overlap 659579 659581 CTGTTTATAAAAAAA CCATGATGGAACACCATA TCCA TATGGTG-TCCATCATGG GTAATTATCAACACA TERM 728 659741 - 659762 + r 79 -8.1 -3.92324 | opp_overlap 659739 659741 CAAAAAAATGCAATA TTGATACGC GCTA GCGTATTAA TTTAATCTTACGAGC zot 661085 - 659901 - | zona occludens toxin TERM 729 660085 - 660068 - G 79 -5.5 -4.87893 | opp_overlap 660068 AACTGTAATTAAAAA GCTCAGT TGGT ACAGAGC CTTGCTGTGATTCAA TERM 730 660489 - 660500 + g 80 -4.4 -5.25893 | opp_overlap 660489, overlap 660481 ATACATTTTAAAAAC GTAC TTAG GTAC TTTTTTAATCTCTCT ace 661366 - 661082 - | enterotoxin orfU 662578 - 661373 - | OrfU TERM 731 662604 - 662591 - R 93 -9.5 -4.34759 | opp_overlap 662591 CATAAGATCAACAAA GGGGC CGAA GCCCC TTCCTATTAATTAAA TERM 732 662591 - 662604 + r 79 -9.5 -3.42147 | opp_overlap 662591 CATAAGATCAACAAA GGGGC CGAA GCCCC TTCCTATTAATTAAA cep 662939 - 662694 - | Cep rstB 663408 - 663082 - | RstB2 protein TERM 733 663237 - 663261 + g 73 -9.5 -3.14132 | overlap 663241 TTAAAAGTTCATCAT TCGATTGAAAT GGG ATTTCAATTGA TTCATGCCCAGAAGC rstA 664565 - 663411 - | RstA2 protein TERM 734 663612 - 663623 + g 93 -2.2 -6.38492 | AATTTGTGAGTGGAT GTCT AGAC AGGC TTTTTTTTTATTACT TERM 735 664503 - 664534 + g 73 -8.2 -3.87354 | opp_overlap 664502 664504 664507, overlap 664504 664507 664512 CCAGTCACAGAAAAC GTAAGGAGATAGAT TTGT ATCTATTTCCTTAA TTTCATCTAAATTTA TERM 736 664533 - 664504 - G 70 -9.5 -2.59132 | opp_overlap 664503 664504 664507 664512, overlap 664502 664507 CAGTCACAGAAAACG TAAGGAGATAGAT TTGT ATCTATTTCCTTA ATTTCATCTAAATTT TERM 737 664504 - 664533 + g 81 -11.7 -2.91689 | opp_overlap 664504 664502 664507, overlap 664503 664507 664512 CAGTCACAGAAAACG TAAGGAGATAGAT TTGT ATCTATTTCCTTA ATTTCATCTAAATTT TERM 738 664507 - 664530 + g 74 -9 -3.59402 | opp_overlap 664504 664502 664507, overlap 664504 664503 664512 TCACAGAAAACGTAA GGAGATAGAT TTGT ATCTATTTCC TTAATTTCATCTAAA rstR 664687 - 665022 + | transcriptional repressor rstR TERM 739 665067 - 665088 + F 89 -8.7 -4.61747 | opp_overlap 665058 665055 AAGTGACGGAGTTTA CCCCCGT AATACTAG ACGGGGG TTTTCTGATTATTCG TERM 740 665396 - 665384 - f 80 -6.3 -4.7373 | CTACGCCATTAAAAA TAACC TGG GGTTA CGTACGCGAGGGATT TERM 741 665454 - 665492 + F 95 -8.9 -5.06414 | opp_overlap 665458, overlap 665458 ATTCCTTTAAGAAAG AAAACCCATGGTGGGGT GTCGA ATTCCACCATGGGTTAC TTTTTATTAACAAAG TERM 742 665458 - 665488 + F 100 -14.1 -3.9407 | opp_overlap 665458, overlap 665454 CTTTAAGAAAGAAAA CCCATGGTGGGGT GTCGA ATTCCACCATGGG TTACTTTTTATTAAC TERM 743 665488 - 665458 - f 100 -9.8 -5.09762 | opp_overlap 665458 665454 CTTTAAGAAAGAAAA CCCATGGTGG GGTGTCGAATT CCACCATGGG TTACTTTTTATTAAC TERM 744 665724 - 665708 - f 77 -5.8 -4.78107 | GATGAGCATTAAAAA GGCCAG ACAAG CTGACC TCCTAATTTAAAGCA VF_A1185 666012 - 666290 + | hypothetical protein TERM 745 666300 - 666324 + T 93 -8.6 -4.67608 | opp_overlap 666302, overlap 666302 666323 TGTTAGCTAGTTACT AAGAGCCAGT TTTGT ACTGGCTCTA TTTTATATTGAAATA TERM 746 666322 - 666302 - T 87 -11.2 -3.18912 | opp_overlap 666300 666302 TTAGCTAGTTACTAA GAGCCAGT TTTGT ACTGGCTC TATTTTATATTGAAA TERM 747 666302 - 666322 + T 93 -11.2 -3.94773 | opp_overlap 666302, overlap 666300 TTAGCTAGTTACTAA GAGCCAGT TTTGT ACTGGCTC TATTTTATATTGAAA VF_A1186 666492 - 666343 - | hypothetical protein VF_A0583 666784 - 667350 + | hypothetical protein TERM 748 667408 - 667368 - T 72 -9.3 -2.76737 | gap 1, opp_overlap 667369 667380, overlap 667371 667380 GATTAATTGCTAAAG TGACAT-AAAAAAGACGC GAATAT GCGTCTTTTTTCATGTCT GTATATTATTGAAAT TERM 749 667369 - 667407 + T 93 -13.5 -3.19509 | gap 1, opp_overlap 667368 667371 667380, overlap 667380 ATTAATTGCTAAAGT GACAT-AAAAAAGACGCG AATA TGCGTCTTTTTTCATGTC TGTATATTATTGAAA TERM 750 667405 - 667371 - T 75 -9.6 -2.65279 | gap 1, opp_overlap 667369 667380, overlap 667368 667380 TAATTGCTAAAGTGA CAT-AAAAAAGACGC GAATAT GCGTCTTTTTTCATG TCTGTATATTATTGA TERM 751 667395 - 667380 - T 84 -6.1 -5.38951 | opp_overlap 667369 667380, overlap 667371 667368 AAGTGACATAAAAAA GACGC GAATAT GCGTC TTTTTTCATGTCTGT TERM 752 667380 - 667395 + T 85 -6.8 -5.25893 | opp_overlap 667380 667371 667368, overlap 667369 AAGTGACATAAAAAA GACGCG AATA TGCGTC TTTTTTCATGTCTGT VF_A0584 668004 - 667426 - | hypothetical protein TERM 753 668171 - 668191 + r 72 -8.3 -3.36648 | opp_overlap 668171 TACAGATACAAAAAA GCCGAGA CATTACA TCTCGGC TTATCGACTCTATTA TERM 754 668191 - 668171 - R 100 -9.7 -5.4492 | opp_overlap 668171 TACAGATACAAAAAA GCCGAGACA TTA CATCTCGGC TTATCGACTCTATTA pntB 669593 - 668217 - | pyridine nucleotide transhydrogenase pntA 671161 - 669605 - | NAD(P) transhydrogenase subunit alpha TERM 755 670106 - 670117 + g 80 -4.4 -5.30616 | TTCAAAATCGATGTT GATG TTGC CATC TTTTTCTTTACATAA TERM 756 671132 - 671116 - G 75 -10.1 -3.14344 | TAGGCGTTGCAGCAA CACGGGT TTC ACCCGCG AAGACTTCTCTAGGT TERM 757 671340 - 671328 - R 74 -3.3 -5.24129 | opp_overlap 671328 TTTGGTGACAAAAAA GAGGT CAA ACCAC TAATTGTTACTTATT TERM 758 671377 - 671395 + r 74 -3.2 -5.22312 | opp_overlap 671381, overlap 671381 CAAGAATAAGTCGAA AAAACAAT CAA ATTGTTTA TTTTTTAATATCAAT TERM 759 671381 - 671391 + r 73 -4 -5.10526 | opp_overlap 671381, overlap 671377 AATAAGTCGAAAAAA CAAT CAA ATTG TTTATTTTTTAATAT TERM 760 671391 - 671381 - R 73 -4 -5.11937 | opp_overlap 671377 671381 AATAAGTCGAAAAAA CAAT CAA ATTG TTTATTTTTTAATAT VF_A0587 671695 - 671420 - | transcriptional activator HlyU TERM 761 671720 - 671689 - G 72 -3.1 -5.08169 | ATAGACGTGAAAAAA GCCCCATTTCA TTTTCCTTTT TGAAATAAGGC TTATTATACATGAGA VF_A0588 672329 - 671775 - | OmpA family domain-containing protein VF_A0589 673563 - 672439 - | integral membrane protein TERM 762 673226 - 673243 + g 72 -3.4 -5.02476 | overlap 673223 TAACCAACCGTTGGC GCTTCG CCTAAT TGAAGC TTTTTTGAAAACTCT VF_A0590 674691 - 673567 - | daunorubicin resistance transmembrane protein VF_A0591 675694 - 674711 - | multidrug resistance protein A VF_A0592 677057 - 675699 - | type I secretion outer membrane protein TERM 763 677111 - 677131 + r 78 -6.9 -4.33165 | opp_overlap 677112, overlap 677112 CTAGATGCAAAAAAA AGCTTATCT ATA AGATAAGCC TTTTAATACATTTAA TERM 764 677112 - 677130 + r 83 -10.4 -3.19176 | opp_overlap 677112, overlap 677111 TAGATGCAAAAAAAA GCTTATCT ATA AGATAAGC CTTTTAATACATTTA TERM 765 677130 - 677112 - R 100 -10.4 -5.83822 | opp_overlap 677112 677111 TAGATGCAAAAAAAA GCTTATCT ATA AGATAAGC CTTTTAATACATTTA luxT 677614 - 677153 - | LuxT transcriptional regulator TERM 766 678345 - 678330 - g 70 -3.4 -4.85599 | opp_overlap 678304 TGCAGTGCAGAAAAA TTAATT TATG AATTAA AAACACGTTCTCTAC VF_A0594 678072 - 678368 + | hypothetical protein TERM 767 678416 - 678391 - T 91 -4.8 -5.79588 | gap 2, opp_overlap 678391 TCAAAATGAAAAAAA GGCCCTAACTAG TCAC CTAG--AGGGCC TTTTTTATTAATTCT TERM 768 678391 - 678416 + T 83 -4.8 -5.57396 | gap 2, opp_overlap 678391 TCAAAATGAAAAAAA GGCCCTAACTAG TCAC CTAG--AGGGCC TTTTTTATTAATTCT VF_A0595 678644 - 678438 - | cold shock protein TERM 769 678697 - 678715 + H 71 -7.5 -3.70902 | TGACACATTTGTCGC TTCGGTA TCCAT TACCGAA TTTCACTATAACAAA VF_A0596 678842 - 679456 + | hypothetical protein VF_A0597 679484 - 680419 + | LysR family transcriptional regulator VF_A0598 681650 - 680421 - | hypothetical protein TERM 770 681049 - 681027 - G 71 -7 -3.98627 | opp_overlap 681033 GTATGAAGATAATAA GCCTAATGCT TGA AGCATTTGAC GAGGCGCTTTTGCCG VF_A0599 681687 - 682349 + | hypothetical protein VF_A0600 682895 - 682386 - | hypothetical protein VF_A0601 683414 - 682902 - | nicotinic acid mononucleotide adenylyltransferase TERM 771 682934 - 682946 + g 72 -9.1 -3.42256 | opp_overlap 682933 682934, overlap 682932 682937 GTTTCTTTATATAAT CCGCA ACA TGCGG TGTTGTTAAGTGGCT TERM 772 683205 - 683220 + g 83 -7.6 -4.81083 | AATCTCTTTTTCTAA TGTCGA GATT TCGACA TTTTTGATAATTAAA nadE 683569 - 684399 + | NAD synthetase yhbQ 684680 - 684396 - | endonuclease TERM 773 684431 - 684460 + g 100 -14.5 -5.94713 | opp_overlap 684431 684438 ATGGTATTTGATTAA TGACTAAGGCTTC TTTT GAAGCTTTAGTCA TTTTTTTTATACGAT TERM 774 684460 - 684431 - G 85 -12.3 -3.16683 | opp_overlap 684431, overlap 684438 ATGGTATTTGATTAA TGACTAAGGCTTC TTTT GAAGCTTTAGTCA TTTTTTTTATACGAT yceH 685333 - 684680 - | hypothetical protein VF_A0605 685485 - 685904 + | hypothetical protein TERM 775 686118 - 686096 - g 72 -9.2 -3.33009 | opp_overlap 686102, overlap 686102 GAAAATTCGTGATAA CCAAAAGCGT GTA ACGCTTCTAG AAAACATGCTTGATT TERM 776 686112 - 686102 - g 79 -6.8 -4.48987 | opp_overlap 686102, overlap 686096 TCGTGATAACCAAAA GCGT GTA ACGC TTCTAGAAAACATGC VF_A0606 686004 - 686312 + | hypothetical protein TERM 777 686353 - 686335 - T 100 -13.2 -5.1861 | opp_overlap 686335 TTTATGATGAAAAAA GGAGGCTA AAT TAGCCTCC TTTTTTTTGTTTATA TERM 778 686335 - 686353 + T 100 -13.2 -6.28967 | opp_overlap 686335 TTTATGATGAAAAAA GGAGGCTA AAT TAGCCTCC TTTTTTTTGTTTATA VF_A0607 686820 - 686377 - | hypothetical protein VF_A0608 687824 - 686820 - | two component response regulator TERM 779 687938 - 687910 - R 80 -11.1 -2.55779 | opp_overlap 687909 687916, overlap 687916 GAATATATAAGACAT GAAAAAGGAGCCT TAA AAGCTCCTTTGTC GTCAGTTACTTGATG TERM 780 687932 - 687916 - R 95 -8.7 -4.88711 | opp_overlap 687916 687909, overlap 687910 ATAAGACATGAAAAA GGAGCCT TAA AAGCTCC TTTGTCGTCAGTTAC VF_A0609 688325 - 687960 - | hypothetical protein TERM 781 688625 - 688606 - R 95 -8.6 -5.64274 | opp_overlap 688606 TGAGGCATAAAAAAA GCACCCTA TTTC TAGGATGC TTTTAAAAATTAGAT TERM 782 688606 - 688625 + r 71 -6.4 -4.1466 | opp_overlap 688606 TGAGGCATAAAAAAA GCACCCTA TTTC TAGGATGC TTTTAAAAATTAGAT VF_A0610 689202 - 688651 - | hypothetical protein yhjX 689520 - 690758 + | transporter TERM 783 690807 - 690774 - f 80 -6.7 -4.69053 | opp_overlap 690779, overlap 690779 TATTATTCAATAAAA TCAAAGCCCGTTTGC AATT GTAAACGGGCTTTTT TTGTTTTTTTCCTCT TERM 784 690802 - 690779 - f 100 -11 -4.3295 | opp_overlap 690779, overlap 690774 TTCAATAAAATCAAA GCCCGTTTGC AATT GTAAACGGGC TTTTTTTGTTTTTTT TERM 785 690779 - 690802 + F 100 -13.2 -6.32976 | opp_overlap 690779 690774 TTCAATAAAATCAAA GCCCGTTTGC AATT GTAAACGGGC TTTTTTTGTTTTTTT TERM 786 692885 - 692873 - g 83 -6.3 -5.09521 | overlap 692867 CTAATAAAGGAAAAA GTGAA TTT TTCAC CCTATTAAATACAAG VF_A0612 690868 - 693222 + | 9-hexadecenoic acid cis-trans isomerase TERM 787 693270 - 693246 - f 72 -5.8 -4.28254 | opp_overlap 693246 693259 693268, overlap 693259 TTTGAATATTGAAAA GTGAGTGT ACACAGGAG ACACTCAC CTTTTTAGGGGTATT VF_A0613 693386 - 693916 + | hypothetical protein VF_A0614 694296 - 693922 - | hypothetical protein VF_A0615 695892 - 694489 - | hypothetical protein TERM 788 695187 - 695203 + g 77 -9.5 -3.55622 | opp_overlap 695183 695180 AATCAAAGTTACAGC TAGTGAC AGT GTCACTA TTTGAAAAACTTAAA TERM 789 696061 - 696033 - R 95 -12.6 -3.66095 | opp_overlap 696029 696035, overlap 696021 696035 696060 AAACTGTTATTCAAA CAGTTACCCACA GAAAT TGTGGATAACTG TGGGTAACTTTAACC TERM 790 696035 - 696069 + r 89 -10.8 -3.53012 | opp_overlap 696033 696035 696060, overlap 696029 ACTGTTATTCAAACA GTTACCCACAGAAATT GTG GATAACTGTGGGTAAC TTTAACCCCACAAGG TERM 791 696069 - 696035 - R 81 -10.1 -3.40775 | opp_overlap 696029 696035, overlap 696033 696060 ACTGTTATTCAAACA GTTACCCACAGAAAT TGTGG ATAACTGTGGGTAAC TTTAACCCCACAAGG VF_A0616 696304 - 696071 - | hypothetical protein VF_A0617 696468 - 698114 + | hypothetical protein TERM 792 698153 - 698135 - f 93 -10.3 -3.90328 | opp_overlap 698135 CACAACTTTTATAAA GCCTCCT TCTAT AGGAGGC TTTTTTGTATATAAT TERM 793 698135 - 698153 + F 100 -10.3 -5.43414 | opp_overlap 698135 CACAACTTTTATAAA GCCTCCT TCTAT AGGAGGC TTTTTTGTATATAAT TERM 794 698613 - 698636 + G 71 -4.8 -4.63218 | gap 1 GGCAGTAGTAACTAT CTT-GTTTAAA TTA TTTAAACCAAG TTTTATTACCAGCAA VF_A0618 698416 - 699756 + | hypothetical protein TERM 795 699784 - 699801 + T 100 -7.7 -5.86332 | opp_overlap 699784 CTCACCTATTTAAAG CGATCTC TTAT GAGGTCG TTTTTTTTGACTTAA TERM 796 700125 - 700104 - T 86 -5.9 -5.39721 | opp_overlap 700104 TTATTAGATAAAAAA GGCTTAG CAATAAAC CTAAGCC TTTCAATACTTATAA VF_A0619 700400 - 700152 - | hypothetical protein VF_A0620 700605 - 700832 + | hypothetical protein TERM 797 700848 - 700873 + T 78 -10.6 -2.60511 | overlap 700847 700846 TGCTGTAATATGTCA TTCTAGCCTT TTAATT AAGGCTAGAA ATCTATTTGTAAATA VF_A0621 701434 - 700904 - | hypothetical protein VF_A0622 702205 - 701630 - | putative lipoprotein TERM 798 702382 - 702357 - R 93 -7.6 -5.71983 | TTAACTATAAAAAAA GGGACTCAAT GACTCG AATGAGTCCC AAATCTGTAATATCC VF_A0623 702620 - 702519 - | hypothetical protein TERM 799 702689 - 702704 + r 74 -6.2 -4.5394 | opp_overlap 702689 ATACAACTTCAGTAA CTGTAA AATA TTACAG TTTTAATATTTGTAT ygeA 703982 - 703278 - | racemase TERM 800 704015 - 704027 + r 74 -6.3 -4.4009 | opp_overlap 704014 AAAAGTAATATAACG CGTAT ATA ATACG TTTTCTGCCATGCAA VF_A0625 704566 - 704117 - | hypothetical protein VF_A0626 705062 - 704628 - | acetyltransferase VF_A0627 705861 - 705313 - | hypothetical protein VF_A0628 706054 - 706920 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 801 707083 - 707058 - T 78 -7.5 -4.208 | overlap 707051 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VF_A1187 707374 - 707120 - | hypothetical protein TERM 802 707190 - 707173 - G 80 -6.3 -4.67353 | TTACCGATGTAAAAA CAAACGG CCTA CCATTTG CTATCACTACGTTTT VF_A0629 707768 - 707406 - | hypothetical protein TERM 803 707979 - 707969 - R 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA ATT TAGC GAACAAAAGAACCGT TERM 804 708321 - 708298 - R 87 -9.6 -3.93166 | overlap 708294 708299 CGTCTAAAAAACTAA CGGCTCAATC ACTG GACTGAGCCA AAAAACTGCAATCTT TERM 805 708320 - 708299 - R 81 -10.9 -2.95177 | overlap 708298 708294 GTCTAAAAAACTAAC GGCTCAATC ACTG GACTGAGCC AAAAAACTGCAATCT VF_A0630 708961 - 708464 - | hypothetical protein TERM 806 708844 - 708856 + g 81 -2.7 -5.65927 | TTTCACGAAGTAGTA CATTT TTA AGATG TTTTTTATTTAGGTG TERM 807 708994 - 708984 - R 73 -4.6 -4.91109 | TTCTCACCAGAAAAA GGCA TAA CGCC TGCATAACACGTTTA TERM 808 709080 - 709054 - R 75 -7.2 -4.208 | opp_overlap 709056, overlap 709047 709056 CCTTAAAACGAGAAA TACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 809 709078 - 709056 - R 82 -9.8 -3.69497 | opp_overlap 709056, overlap 709047 709054 TTAAAACGAGAAATA CCCGGCAAAC TGA GATTGCCGAG TGTAGTAAATCGTGT VF_A0631 710063 - 709110 - | hypothetical protein VF_A0632 710931 - 710353 - | hypothetical protein VF_A0633 711625 - 711245 - | hypothetical protein TERM 810 711774 - 711764 - R 74 -3.2 -5.21709 | TCTCACATCAAAAAA GCAT TTA ACGC CTGCATAACACGTTT TERM 811 711860 - 711835 - R 78 -7.5 -4.208 | overlap 711828 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VF_A0634 712119 - 711895 - | hypothetical protein VF_A0635 712695 - 712222 - | hypothetical protein VF_A0636 713085 - 712801 - | hypothetical protein TERM 812 713247 - 713221 - R 100 -15.2 -4.208 | opp_overlap 713223, overlap 713214 CCCTAAAACGAGAAA CACTCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 813 713223 - 713245 + r 84 -12 -2.81642 | opp_overlap 713214 713221 CTAAAACGAGAAACA CTCGGCAAAC TGA GATTGCCGAG TGTAGTAAATCGTGT VF_A0637 714956 - 714441 - | hypothetical protein TERM 814 715182 - 715156 - R 100 -13 -4.208 | opp_overlap 715158, overlap 715149 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VF_A0638 715859 - 715230 - | hypothetical protein VF_A0639 716375 - 716019 - | hypothetical protein VF_A0640 716951 - 716541 - | glyoxylase TERM 815 717108 - 717083 - R 78 -7.5 -4.208 | CCTTAAAATGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VF_A0641 717505 - 717197 - | hypothetical protein VF_A0642 717783 - 718151 + | hypothetical protein TERM 816 718162 - 718187 + T 79 -8.3 -4.07568 | TTTAATTAAACCCTA TGGGGCTAGCT AAAC AACTAGCTCCA TTTTACAAAAACACA VF_A0643 719108 - 718320 - | phosphotransferase family protein TERM 817 719233 - 719207 - H 100 -13 -4.208 | opp_overlap 719209, overlap 719200 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GGTTGCCGAGTG TAGTAAATCGTGTTG TERM 818 719383 - 719359 - H 100 -11.5 -5.84381 | GTATGAATAAAAAAA GGGCTCGAT GACTGGA ATCGAGCCC TGAACGTGAAATGCC TERM 819 719568 - 719542 - H 100 -6.6 -6.02914 | TTCACACAAAAAAAA GGGACTCATT GGCTAAA ATTGAGTCCC AGACATGAAATGCTT VF_A0644 719883 - 720251 + | hypothetical protein VF_A0645 720817 - 720374 - | acetyltransferase VF_A0646 721417 - 720959 - | hypothetical protein TERM 820 721098 - 721113 + g 70 -2.6 -5.08255 | gap 1 AGGCGATAAGTTTGG TGAC-CT AAT AGTGTCA TTTTATTTTCAACAT TERM 821 721532 - 721507 - R 78 -7.5 -4.208 | overlap 721500 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VF_A0647 722393 - 721572 - | hypothetical protein VF_A0648 722771 - 722406 - | hypothetical protein VF_A0649 723241 - 722927 - | toxin of toxin-antitoxin (TA) stability system VF_A0650 723486 - 723232 - | antitoxin of toxin-antitoxin (TA) stability system VF_A0651 724331 - 725500 + | hypothetical protein VF_A0652 725517 - 726542 + | hypothetical protein TERM 822 726581 - 726546 - T 95 -8.6 -4.96106 | gap 1, opp_overlap 726551, overlap 726547 TACAAACATTAAAAA CTAAATGCCACATTATC GAA AATA-TGTGGCATTTAA CGCCTGCATAACACG TERM 823 726580 - 726547 - T 82 -9.9 -3.56037 | gap 1, opp_overlap 726551, overlap 726546 ACAAACATTAAAAAC TAAATGCCACATTATC GAA AATA-TGTGGCATTTA ACGCCTGCATAACAC VF_A0653 727160 - 726708 - | IAA acetyltransferase VF_A0654 727819 - 727310 - | hypothetical protein VF_A0655 728824 - 727937 - | hypothetical protein TERM 824 728433 - 728457 + g 75 -2.9 -5.22481 | opp_overlap 728433 728435, overlap 728435 GCAATAAAATTGAAA TAGTATTTGTT ACC ATCAAATACCA TTTTCTTTGTTTGTA VF_A0656 730075 - 729551 - | hypothetical protein VF_A0657 730330 - 730632 + | hypothetical protein VF_A0658 731234 - 730824 - | hypothetical protein TERM 825 731503 - 731479 - H 100 -7.9 -5.85737 | ATATGAATAAAAAAA GGGCTCGAT GACTGGA ATCGAACCC TGAACGTGAAATGCC TERM 826 731662 - 731636 - H 95 -6.6 -5.93809 | TCGGCACAAAAAAAA GGGACTCATT GGCTAAA ATTGAGTCCC AGACATGAAATGCTT TERM 827 731994 - 731984 - H 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA ATT TAGC GAACAAAAGAACCGT VF_A0659 732588 - 732890 + | hypothetical protein VF_A0660 733430 - 733032 - | prolyl endopeptidase TERM 828 733549 - 733523 - R 100 -13 -4.208 | opp_overlap 733525, overlap 733516 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VF_A0661 734072 - 733701 - | hypothetical protein TERM 829 734245 - 734220 - R 78 -7.5 -4.22407 | overlap 734213 CATTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VF_A0662 734695 - 734270 - | acetyltransferase TERM 830 734457 - 734469 + g 73 -7.7 -3.86202 | AATTTGCTACCAATT CCAGA GCC TCTGG TTTCCTCTGATAGCC TERM 831 735680 - 735666 - g 78 -2.8 -5.44119 | overlap 735668 GCCATTGCAAAAAAA TACCCT CAC AGAGCA AAAAGTTATGGTTGG TERM 832 735938 - 735909 - g 84 -12.3 -3.04032 | opp_overlap 735908 735909, overlap 735906 ACAATACAAGAATTA TTGGGTCATTCTG ATAT CAAAACGACCCAA ATTTATACTCACGTA VF_A0663 735018 - 736001 + | XerC/CodV family integrase/recombinase VF_A0664 736181 - 736008 - | hypothetical protein VF_A0665 737008 - 736184 - | putative cytoplasmic protein ydiI 737456 - 737031 - | hypothetical protein VF_A0667 737601 - 738305 + | hypothetical protein TERM 833 738384 - 738363 - T 100 -10.9 -5.03994 | opp_overlap 738355 738363 TCTTAGATACAAAAA TGCCAGCAT TTAT ACGCTGGCA TTTTTTATGGATTCA TERM 834 738363 - 738384 + T 95 -8.7 -5.31456 | opp_overlap 738363, overlap 738355 TCTTAGATACAAAAA TGCCAGCAT TTAT ACGCTGGCA TTTTTTATGGATTCA VF_A0668 738608 - 738408 - | hypothetical protein TERM 835 739152 - 739195 + r 95 -12.8 -3.6834 | opp_overlap 739152 739157 739166, overlap 739157 739166 GGGGCTTGCCACCAA TAAAATATAAAAAACCGCCG ATAA TGGCAGTTTTTTGTATTTTA TTTAAACCTTTTATT TERM 836 739195 - 739152 - R 85 -12.1 -3.14132 | opp_overlap 739152 739157 739166, overlap 739157 739166 GGGGCTTGCCACCAA TAAAATATAAAAAACCGCC GATAAT GGCAGTTTTTTGTATTTTA TTTAAACCTTTTATT TERM 837 739157 - 739190 + r 90 -8.3 -4.88405 | opp_overlap 739157 739152 739166, overlap 739152 739166 TTGCCACCAATAAAA TATAAAAAACCGCCG ATAA TGGCAGTTTTTTGTA TTTTATTTAAACCTT TERM 838 739190 - 739157 - R 83 -7.6 -4.71426 | opp_overlap 739152 739157 739166, overlap 739152 739166 TTGCCACCAATAAAA TATAAAAAACCGCC GATAAT GGCAGTTTTTTGTA TTTTATTTAAACCTT TERM 839 739181 - 739166 - R 84 -3.9 -5.65678 | opp_overlap 739166 739157 739152, overlap 739157 739152 ATAAAATATAAAAAA CCGCC GATAAT GGCAG TTTTTTGTATTTTAT TERM 840 739166 - 739181 + r 78 -2.4 -5.65678 | opp_overlap 739157 739152 739166, overlap 739157 739152 ATAAAATATAAAAAA CCGCCG ATAA TGGCAG TTTTTTGTATTTTAT VF_A0669 739534 - 739193 - | hypothetical protein TERM 841 739452 - 739439 - G 71 -5.3 -4.63542 | CATAACTTCTAAAAA TGCAA CCAT TTGCA TAGGATGAATTTCAT TERM 842 739643 - 739658 + r 75 -8.2 -3.88498 | opp_overlap 739643 CATACGTACAAAAAA CCGCCG GTAA TGGCGG TTTAGTCTATAAAAC TERM 843 739658 - 739643 - R 89 -7.5 -5.29782 | opp_overlap 739643 CATACGTACAAAAAA CCGCC GGTAAT GGCGG TTTAGTCTATAAAAC VF_A0670 740099 - 739908 - | hypothetical protein VF_A0671 740976 - 740479 - | hypothetical protein TERM 844 740886 - 740855 - G 93 -9.4 -4.91712 | overlap 740845 GTGAAGTCAGAAAAA CTAACACGGCACCG TTTT CGATTCCGAGTTAG CAATAACAGAGCTAC VF_A0672 743676 - 741538 - | outer membrane heme receptor sbmA 744692 - 743673 - | putative transporter TERM 845 743757 - 743746 - G 76 -7.2 -4.13945 | opp_overlap 743746 ATTTGCATTTCAAAA GCGC GTAG GCGC TTGTAAATTGACATT TERM 846 744949 - 744931 - R 72 -8.2 -3.36878 | TTTATGGACTTAGAA CTTAACGC CAA GCATTAAG CTGGAAATAGTAGAA VF_A0674 745473 - 744925 - | hypothetical protein VF_A0675 746143 - 746042 - | hypothetical protein TERM 847 746468 - 746458 - H 72 -2.6 -5.25799 | AAAACAAGACAAAAA TTTT AAT AAAA CTGTATAAGGTTCGA VF_A0676 746486 - 747136 + | hypothetical protein TERM 848 747183 - 747166 - T 73 -6.9 -3.97947 | opp_overlap 747165 747166 TTTAGCCACCACAAA GCCCCGT TTCT AAGGGGC CTTCTTTTTTATCTC VF_A0677 749347 - 747434 - | methyl-accepting chemotaxis protein VF_A0678 749540 - 750496 + | MoxR protein TERM 849 750997 - 751033 + G 71 -6 -4.1552 | gap 1 TAAATCCACACTCGA TTGTAAGCCCTC-TTCT CGTC AGAAAGTGGTCTTACAA TTTCTTCAAAAGATC VF_A0679 750545 - 751504 + | putative cytoplasmic protein TERM 850 751705 - 751687 - g 85 -3 -5.71712 | opp_overlap 751687 GCTTACAGAAAAAAA CGACGCCT TCA ACGGGTCG CTTTATCGGAATTAG TERM 851 751918 - 751928 + G 71 -6.8 -4.03234 | GAGAAAGCCTTATAC GGCA AAG TGCC TTTATCTGAAACCAA VF_A0680 751504 - 752037 + | hypothetical protein TERM 852 752759 - 752748 - g 73 -5.8 -4.64861 | opp_overlap 752744, overlap 752744 TCTTTGGAAAACAAA CGGT AAAT ACCG CTCGTGATCTGGATG VF_A0681 752030 - 752995 + | hypothetical protein VF_A0682 752988 - 754895 + | transporter TERM 853 754951 - 754941 - g 73 -5.4 -4.56133 | CTTCAATAATGAAAA CATC ACT GATG AAGAAAATACTATTA TERM 854 756552 - 756533 - g 77 -5 -4.88217 | AGTAAAAAATCAAAA TCAAGCCC AGCA GAACTTGA AGCATTATAGACTTT VF_A0683 754889 - 756562 + | hypothetical protein TERM 855 756588 - 756606 + T 90 -8.1 -4.84527 | opp_overlap 756588 CATAAATGAATTTAA GGCTGGC TATGT GTCAGCC TTTTTAATCTCTCAC VF_A0684 756708 - 756610 - | hypothetical protein talB 756912 - 757862 + | transaldolase B TERM 856 757884 - 757918 + F 73 -7.8 -3.87815 | overlap 757885 757890 757913 GGTTTCAGATCGGTC GGCAAGCTCCCTTGCA GAA TTCAGGGGGGTTTGCA TTTATACCAATGCAA TERM 857 757885 - 757917 + F 83 -11.3 -2.92475 | overlap 757884 757890 757913 GTTTCAGATCGGTCG GCAAGCTCCCTTGCA GAA TTCAGGGGGGTTTGC ATTTATACCAATGCA TERM 858 758478 - 758462 - g 89 -10.1 -4.14511 | AACTTCACTCTAAAA CTCCGGG TCA CCCAGAG TATGGCTATGCGCCA TERM 859 759211 - 759190 - g 85 -6.7 -5.07486 | gap 1, opp_overlap 759193, overlap 759191 759193 GAGTGGGAAGAAAAA GCATCAGCAA TCA TTGCTGAT-C TTCAAGCTAACCCTG TERM 860 759209 - 759193 - g 75 -9.5 -3.39061 | opp_overlap 759193, overlap 759190 759191 TGGGAAGAAAAAGCA TCAGCAA TCA TTGCTGA TCTTCAAGCTAACCC TERM 861 759193 - 759209 + G 72 -9.5 -3.04144 | opp_overlap 759193 759190 759191 TGGGAAGAAAAAGCA TCAGCAA TCA TTGCTGA TCTTCAAGCTAACCC TERM 862 759785 - 759769 - g 77 -9.5 -3.54408 | opp_overlap 759781 CGTGATGCAAAGCAA TTAGCGA ACA TCGCTAA AGGTGGCTATATCCT tktB 758176 - 760167 + | transketolase TERM 863 760216 - 760186 - T 100 -13.4 -3.88583 | opp_overlap 760191, overlap 760191 CAAACGCTTTATAAA CAAAAGCCTCGCTA ATT CAGCGAGGCTTTTT TATATTGAGAAATAG TERM 864 760191 - 760211 + T 100 -12.6 -5.47159 | opp_overlap 760186 760191 GCTTTATAAACAAAA GCCTCGCT AATTC AGCGAGGC TTTTTTATATTGAGA TERM 865 760211 - 760191 - T 100 -13.3 -4.99043 | opp_overlap 760191, overlap 760186 GCTTTATAAACAAAA GCCTCGCTA ATT CAGCGAGGC TTTTTTATATTGAGA htrB1 761187 - 760252 - | lipid A biosynthesis lauroyl acyltransferase TERM 866 761222 - 761205 - R 74 -6.3 -4.2828 | overlap 761213 TTTCACCCATCAAAA CTAAGAC ACCT GTCTCAG AAATATAATTAAAGT VF_A0688 762190 - 761408 - | hypothetical protein VF_A0689 762407 - 763300 + | hypothetical protein VF_A0690 763333 - 767424 + | hypothetical protein TERM 867 767437 - 767464 + T 75 -8.5 -3.36452 | opp_overlap 767442, overlap 767442 TAACCTCCCCCAATA AAAAAGCCAGC ATAACC GCTGGCTTTTC TTCATCTTAAACACT TERM 868 767442 - 767459 + T 86 -8.4 -4.78753 | opp_overlap 767442, overlap 767437 TCCCCCAATAAAAAA GCCAGC ATAACC GCTGGC TTTTCTTCATCTTAA TERM 869 767459 - 767442 - T 100 -9.1 -5.4505 | opp_overlap 767442 767437 TCCCCCAATAAAAAA GCCAGCA TAAC CGCTGGC TTTTCTTCATCTTAA nfsB 768141 - 767485 - | dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive VF_A0692 769550 - 768231 - | GGDEF domain-containing protein TERM 870 768388 - 768407 + g 73 -2 -5.21236 | AATTCTTTTTCTATC GCTGATCG TATC CTCTCAGC TTTTTCTTCTGAATT TERM 871 769742 - 769730 - H 72 -2.7 -5.34655 | CAATTAAAAACAAAA CTTAC AAC ATAAG TTTAAATTCTCATCG VF_A0693 769866 - 770063 + | hypothetical protein VF_A0694 770256 - 770966 + | hexapeptide repeat-containing transferase TERM 872 770990 - 771008 + T 95 -14.6 -2.69288 | opp_overlap 770990, overlap 770987 770986 TACGTACACAAAAAA GGGTCGCA AAC TGCGACCC TAACTTATTCGTTAT TERM 873 771008 - 770990 - T 100 -14.6 -5.38047 | opp_overlap 770987 770986 770990 TACGTACACAAAAAA GGGTCGCA AAC TGCGACCC TAACTTATTCGTTAT guaC 772085 - 771042 - | guanosine 5'-monophosphate oxidoreductase TERM 874 772202 - 772179 - H 100 -10.9 -5.64274 | opp_overlap 772179 GCAGGCACAAAAAAA CCGGGGCGC TGGCAG GCGCTCCGG TTTTCAGTATTATAG TERM 875 772179 - 772202 + H 100 -13.8 -4.30441 | opp_overlap 772179 GCAGGCACAAAAAAA CCGGGGCGCT GGCA GGCGCTCCGG TTTTCAGTATTATAG TERM 876 773301 - 773286 - g 70 -3.2 -4.86731 | TTTCTTGAAAGAAAA CGTAAC TGTT GTTGCG ATGAATGAAGAAGAA VF_A0696 772546 - 773850 + | inosine-guanosine kinase TERM 877 773872 - 773908 + T 100 -10.5 -4.08578 | gap 1, opp_overlap 773880, overlap 773880 TTAGCATCTGGTTCA TA-AAAAAATCCGACG GTTAAA CGTCGGATTTTTTGTA TTTATAATTCAGTTT TERM 878 773899 - 773880 - T 100 -9.3 -5.60993 | opp_overlap 773872 773880 TGGTTCATAAAAAAA TCCGACG GTTAAA CGTCGGA TTTTTTGTATTTATA TERM 879 773880 - 773899 + T 100 -9.3 -5.59879 | opp_overlap 773880, overlap 773872 TGGTTCATAAAAAAA TCCGACG GTTAAA CGTCGGA TTTTTTGTATTTATA ppiC 774205 - 773927 - | peptidyl-prolyl cis-trans isomerase C (rotamase C) TERM 880 774989 - 774979 - g 85 -4 -5.66989 | GAAATACTAAAAAAA TCAT CTG ATGA AGGTAAACCATATAA cheV3 774346 - 775242 + | CheW/CheY hybrid protein CheV3 TERM 881 775325 - 775302 - T 100 -11.8 -5.4492 | opp_overlap 775302 TACACATACAAAAAA CCGCATTACC CTAG GATAATGCGG TTTTTTTATATTTTT TERM 882 775302 - 775325 + T 100 -10.4 -5.9667 | gap 1, opp_overlap 775302 TACACATACAAAAAA CCGCATTA-CC CTA GGATAATGCGG TTTTTTTATATTTTT VF_A0699 776047 - 775364 - | nodulation protein N TERM 883 776102 - 776123 + r 74 -2.3 -5.43866 | gap 1 TTAATAGCCAGATTG CGTAATTGTG TTA CACA-TCACG TTTTTTTGCAAATTA TERM 884 776406 - 776425 + r 71 -6.4 -4.14739 | opp_overlap 776406 TCAATAAACAAAAAA CCTCTGAA TAAA TACAGAGG TTTTCAAATAACTCA TERM 885 776425 - 776406 - R 95 -6.4 -5.80003 | opp_overlap 776406 TCAATAAACAAAAAA CCTCTGAA TAAA TACAGAGG TTTTCAAATAACTCA gcvT 777606 - 776488 - | aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex TERM 886 777400 - 777412 + g 93 -7.7 -5.38497 | opp_overlap 777392, overlap 777392 AACCAAAGCTTCTAA TGCAG CAG CTGCA TTTTTTCCTTTAAGT VF_A0701 778328 - 777672 - | transcriptional regulator TERM 887 777853 - 777834 - G 75 -2.8 -5.23396 | overlap 777835 AAGAACTAATAAAAA CTCTTCAC CATC GTGACGAA CCCATTCTGCATACG gcvH 778596 - 778976 + | glycine cleavage system protein H gcvP 779000 - 781867 + | glycine dehydrogenase TERM 888 781920 - 781899 - T 74 -5.9 -4.55287 | opp_overlap 781899, overlap 781884 CCTATCTATATAAAA TAGACAAGC GTAT GTTTGTCTA TTTTTTTTATCTAAA TERM 889 781899 - 781920 + T 100 -8.1 -6.02914 | opp_overlap 781884 781899 CCTATCTATATAAAA TAGACAAGC GTAT GTTTGTCTA TTTTTTTTATCTAAA VF_A0704 782789 - 782181 - | hypothetical protein VF_A0705 789201 - 782758 - | hypothetical protein TERM 890 787382 - 787411 + gH 90 -10.7 -3.75863 | TTAGCTTTGAAGTGT GCTGCTGAACGCT TATA AGCTTCCAGCAGC TTTGGTCGAGCTTTT TERM 891 789918 - 789940 + H 93 -9.2 -4.2828 | opp_overlap 789917 ACTACTCTCCAATAT GGGAAATGAA TCA TTCCTTTCCC TTTTGCTACATGAAA VF_A0706 790265 - 792298 + | EAL domain-containing protein VF_A0707 793258 - 792386 - | drug/metabolite exporter family protein TERM 892 792878 - 792854 - G 73 -7.1 -4.00097 | overlap 792858 ACAACTTAATAAGAA GACAGCAACCG CGC CGATTGCCACC CCTAACCACCCAAAT TERM 893 792874 - 792858 - G 70 -8.7 -3.35255 | overlap 792854 CTTAATAAGAAGACA GCAACCG CGC CGATTGC CACCCCTAACCACCC TERM 894 792953 - 792980 + g 75 -2.8 -5.19879 | CACAGGAGCTTCACT CTTTGCCA ACCCTGCTCCAA TGGCAAAG TTTTTCTGTTTAAAC TERM 895 793070 - 793056 - G 76 -2.1 -5.37865 | CCAATAATGAAAAAA TACGA ATAAG CCGTA AAGCTTGGTAAATTA TERM 896 793164 - 793148 - G 80 -6.5 -4.83169 | overlap 793149 ACCGGCCCACAAAAA TCGTGAC AGT GTCACGC CCGTCACATTCAATT TERM 897 793163 - 793149 - G 79 -10 -3.49419 | overlap 793148 CCGGCCCACAAAAAT CGTGAC AGT GTCACG CCCGTCACATTCAAT TERM 898 793229 - 793202 - G 72 -8.4 -3.53761 | TAATCGGCTTTGAAA CGCATTCCGCCA TGAT TGGCTAAACGCG GCAAGTAACGTAAAT yijO 794197 - 793340 - | DNA-binding transcriptional regulator TERM 899 793593 - 793581 - G 77 -6.3 -4.49756 | opp_overlap 793581 GGTGAAATATTAAAA CGATT CGC AATCG TGGTTCTATCTATGC TERM 900 793729 - 793760 + g 73 -8.2 -3.90291 | opp_overlap 793735, overlap 793735 TGTAACTGAGTAACG CAAGAAGCAGAT ATTCGTCG ATCTGCTTTTTG TTTGGTTCGCGGGCT TERM 901 793735 - 793754 + g 79 -3.6 -5.38326 | opp_overlap 793735, overlap 793729 TGAGTAACGCAAGAA GCAGAT ATTCGTCG ATCTGC TTTTTGTTTGGTTCG VF_A1188 794340 - 794188 - | hypothetical protein TERM 902 794310 - 794322 + g 87 -3.5 -5.75822 | AATCATGTAACTCTT TATTT ATT AAATA TTTTTTTGATTTGTA VF_A0709 794498 - 796399 + | PTS system, mannose-specific IIAB component TERM 903 796407 - 796445 + F 100 -13.4 -4.2408 | CTGCTTAATTGCTCT GACACTATTGACGACA ATCCCCC TGTCGTTGATAGTGTC TTTCTAGTTTTATGA manA 796471 - 797667 + | mannose-6-phosphate isomerase TERM 904 797788 - 797815 + T 100 -12.8 -5.24129 | opp_overlap 797787 797788 AGGGTCTAGCAGAAT GCTGGCTTAGCG TTGT CGTTAAGTCAGC TTTTTTATGCCCGCA VF_A0711 798632 - 797847 - | PTS system, IIA component VF_A0712 798931 - 798632 - | hypothetical protein TERM 905 800539 - 800518 - g 77 -8.7 -3.79668 | opp_overlap 800517 800514 800518 ATTTAATGTATTAAA CCATGCTCC TTGG GGAGGATGG ATTGTATTACCTGTT TERM 906 800683 - 800672 - g 70 -3 -5.12068 | opp_overlap 800672, overlap 800666 CATACGCAACAAAAA TTCA CTTT TGAA TCCGTTAAAAATGAA frwC 799136 - 801031 + | enzyme IIC component of PTS TERM 907 801072 - 801037 - T 84 -12.1 -2.67441 | opp_overlap 801035, overlap 801034 801033 AAAAGCGTAAACTCA GTCAGGGTTGATT GTAATATCTT AATCAACCCTGAC CTTAAAACCGTTAAT VF_A0714 803417 - 801099 - | serine protease TERM 908 804153 - 804139 - H 73 -3.6 -5.08483 | opp_overlap 804142 804146, overlap 804142 804144 TAAAATTAAATAAAA TAACAG CCG CTATTA CTAGCGTCATGTTTA VF_A0715 804162 - 807479 + | chitodextrinase precursor TERM 909 807531 - 807556 + T 100 -10.5 -5.67063 | opp_overlap 807531 CTGTTAAATGAATAA GAACCCTGCTT TTCG AAGTGGGGTTC TTTTTTTGTAATAAA VF_A0716 808192 - 808046 - | hypothetical protein TERM 910 808258 - 808273 + r 78 -7.6 -4.2074 | CGCCAGTATCAAGTG CATGGA TCAG TCCATG TTTATCTGTTCCCCA VF_A0717 809736 - 808534 - | putative lipoprotein VF_A0718 810962 - 809736 - | hypothetical protein VF_A0719 815894 - 811053 - | hypothetical protein TERM 911 812205 - 812183 - G 76 -9.2 -3.64703 | GTTTTTCTATCGAAA CTTTATGCTG ATT CAGCTTAAAG AAATACGACAGAGCT TERM 912 813038 - 813059 + g 73 -2.4 -5.31877 | gap 1 TTTCTATGTAGTCTT GAACTCGAT CGCTT AT-GAGTTC TTTTTTATAATCACT TERM 913 815086 - 815070 - G 73 -6.6 -4.27965 | opp_overlap 815070 815071 815072 815085, overlap 815072 AGAATCAAAATTAAA CACTAC GCTCG GTAGTG TAGCTTTAGCTTCAT VF_A0720 816985 - 815894 - | putative lipoprotein TERM 914 816742 - 816754 + g 71 -4.8 -4.57073 | TAAGATCTTCTTTTG GCCA CTCTT TGGC TTTTTCAACAAAGTA VF_A0721 818684 - 816990 - | hypothetical protein TERM 915 817787 - 817813 + g 74 -4.4 -4.90013 | ATTCTGGCAGAAACT CCGATCCTGTAA TAT TTACATGGTAGG TTTTTGATTGGCTTG TERM 916 818906 - 818889 - R 88 -6.2 -5.64421 | opp_overlap 818889 818902, overlap 818902 ATGTGAAACAAAAAA CGGCCC AATTAA GGACCG CTTCATTGCTGTCAT VF_A0722 820477 - 818936 - | sodium/proton antiporter VF_A0723 820810 - 821280 + | hypothetical protein VF_A0724 822204 - 821281 - | LysR family transcriptional regulator VF_A0725 822303 - 823343 + | choloylglycine hydrolase family protein TERM 917 823384 - 823406 + T 100 -9.2 -5.60556 | opp_overlap 823384 AATACTAAGACCAAA GCCGAATG TATTTAC CATTCGGC TTTTTATTTTATCTT TERM 918 823406 - 823384 - T 85 -9.2 -3.96696 | opp_overlap 823384 AATACTAAGACCAAA GCCGAATG TATTTAC CATTCGGC TTTTTATTTTATCTT VF_A0726 824397 - 823420 - | NAD-dependent oxidoreductase VF_A0727 824775 - 824428 - | putative cytoplasmic protein TERM 919 824845 - 824823 - R 100 -11.4 -5.80817 | opp_overlap 824823 TCCAATACAAAAAAA CCTAGATAGA CGT TCTACCTAGG TTTCAATTATTTCGC TERM 920 824823 - 824845 + r 81 -9.2 -3.89435 | opp_overlap 824823 TCCAATACAAAAAAA CCTAGATAGA CGT TCTACCTAGG TTTCAATTATTTCGC VF_A0728 825130 - 824852 - | acetyltransferase VF_A0729 826349 - 825171 - | major facilitator transporter abgR 827321 - 826434 - | DNA-binding transcriptional regulator TERM 921 827994 - 827981 - g 70 -8.1 -3.74158 | CCAACCAGATTTAAA CTGGG AGAA CCCAG AAGTTCACCAAAAAG TERM 922 828939 - 828923 - g 71 -7.3 -3.82946 | TGAGCGTAAAGATAA CGACCAA CAC TTAGTCG TGCTAAATAACTTTA treC 827466 - 829097 + | trehalose-6-P hydrolase VF_A0732 829970 - 829167 - | transcriptional regulator TERM 923 829772 - 829789 + g 70 -2.7 -5.03994 | TTGCCGCCAATGCCA TGCCA TCTAACTC TGGCA TTTTTATATCTAAAA VF_A0733 831019 - 829967 - | two component sensor histidine kinase VF_A0734 832274 - 831096 - | hypothetical protein VF_A0735 833074 - 832277 - | hypothetical protein TERM 924 832854 - 832877 + g 77 -5.3 -5.00642 | GTGTATACCGTGTAT TGGCGAGTT TTATCT AGCTCGTCA TTTTTGTATAGCTTA VF_A0736 834335 - 833067 - | ABC transporter permease protein TERM 925 833640 - 833628 - G 76 -3.4 -5.33405 | GGTATCAAATAAAAA TACC GATAA GGTA CTCACTTTCTCTGAT VF_A0737 835006 - 834323 - | ABC transporter ATP-binding protein VF_A0738 835657 - 835016 - | hypothetical protein yhhY 835843 - 836337 + | acetyltransferase TERM 926 836375 - 836410 + T 78 -10.6 -2.74488 | gap 1, opp_overlap 836406, overlap 836406 AAACTTAATTAAACG TGGCGGTCTGTTTCTGA ATA TTAGGAGCA-ACCGCCA TACTTAGCGTAATTG ybiI 836683 - 836414 - | hypothetical protein TERM 927 836834 - 836814 - R 82 -5.4 -5.21709 | opp_overlap 836814 GGGGATATTAAAAAA GCCGCAAA ATTAA CTTACGGC TTTCATTCATAGCTA VF_A0741 837871 - 836867 - | hypothetical protein VF_A0742 839019 - 837994 - | hypothetical protein VF_A0743 840099 - 839032 - | multidrug resistance protein A TERM 928 839525 - 839537 + g 73 -7.7 -3.95883 | overlap 839524 TCTAAATCTAACTCT GCTTG TTT CAAGC TATTTTTCGCTGATA TERM 929 840247 - 840259 + G 70 -2.7 -5.01535 | overlap 840241 TCTTTGCCTTCATTT GATGA TAT TTATC TTTTTGTCCTTGTAG VF_A0744 840214 - 841101 + | LysR family transcriptional regulator TERM 930 841366 - 841404 + T 100 -12 -4.8622 | opp_overlap 841367 841369 841373, overlap 841369 841373 CCAAGTGAGCCCTAA ATATAAAGCCAATATCAT CAA ATGATATTGGCTTTATTC TTTTTACTTAAACAG TERM 931 841403 - 841367 - T 100 -15.5 -3.58269 | opp_overlap 841366 841369 841373, overlap 841369 841373 CAAGTGAGCCCTAAA TATAAAGCCAATATCAT CAA ATGATATTGGCTTTATT CTTTTTACTTAAACA TERM 932 841401 - 841369 - T 100 -18.1 -3.36694 | opp_overlap 841366 841369 841373, overlap 841367 841373 AGTGAGCCCTAAATA TAAAGCCAATATCAT CAA ATGATATTGGCTTTA TTCTTTTTACTTAAA TERM 933 841369 - 841401 + T 100 -18.1 -4.53777 | opp_overlap 841369 841367 841373, overlap 841366 841373 AGTGAGCCCTAAATA TAAAGCCAATATCAT CAA ATGATATTGGCTTTA TTCTTTTTACTTAAA TERM 934 841397 - 841373 - T 100 -14.5 -4.33258 | opp_overlap 841369 841366 841373, overlap 841369 841367 AGCCCTAAATATAAA GCCAATATCAT CAA ATGATATTGGC TTTATTCTTTTTACT TERM 935 841373 - 841397 + T 100 -14.5 -4.78157 | opp_overlap 841373 841369 841367, overlap 841369 841366 AGCCCTAAATATAAA GCCAATATCAT CAA ATGATATTGGC TTTATTCTTTTTACT bioD 842112 - 841432 - | dithiobiotin synthetase bioC 842926 - 842105 - | biotin biosynthesis protein BioC TERM 936 842348 - 842361 + g 79 -6.7 -4.62783 | GTTGTTGCATTCAGA TTGCG CTAA CGCAA TTTTTACCATAGATG bioF 844084 - 842933 - | 8-amino-7-oxononanoate synthase bioB 845120 - 844068 - | biotin synthase TERM 937 844958 - 844972 + g 70 -5.7 -4.41494 | AATACTTACAGTCTT CAGGA CAGGC TCCTG TTTTAATTGAAAGTA bioA 845249 - 846529 + | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 938 846567 - 846541 - T 100 -12.4 -5.95946 | opp_overlap 846541 CTAATAATAAAAAAA CCGATGCCTTTA CAA TAAAGGTATCGG TTTTTTAGACGCTCA TERM 939 846541 - 846567 + T 100 -14.6 -5.02074 | opp_overlap 846541 CTAATAATAAAAAAA CCGATGCCTTTA CAA TAAAGGTATCGG TTTTTTAGACGCTCA VF_A0749 846814 - 846605 - | hypothetical protein rimJ 847515 - 846958 - | ribosomal-protein-S5-alanine N-acetyltransferase tyrR 849074 - 847527 - | DNA-binding transcriptional regulator, tyrosine-binding TERM 940 848369 - 848411 + g 90 -8.7 -5.15969 | gap 1 TCTCTTTACCCGTTC CTGTCTCACCTTGGATCAAT AATG ATTGATC-AATGTCAGACAG TTTTTTCGCTTGAGA TERM 941 848620 - 848588 - G 77 -7.7 -4.19624 | overlap 848589 CATCTGTAATATAAA CTGGCATGATCTCCA TGA TGTAGTTCATGCCAT CAATCAACATAGGTT TERM 942 848619 - 848589 - G 82 -11.2 -3.11292 | overlap 848588 ATCTGTAATATAAAC TGGCATGATCTCCA TGA TGTAGTTCATGCCA TCAATCAACATAGGT TERM 943 848697 - 848722 + g 76 -6.9 -4.44974 | opp_overlap 848697 GTCTGACAATAAAAC CGTTGCTGATT GGCC AATAAGCGACG TTTTATCCAATTTAA TERM 944 849404 - 849391 - g 71 -6.7 -4.09215 | opp_overlap 849390 TAGATTAATGACAAA CGATG AACG CATCG CCTTAGTTGATTCTA ybgA 849209 - 850153 + | hypothetical protein TERM 945 850240 - 850217 - g 77 -11 -2.83641 | opp_overlap 850207 850207 850215 850214 850217 TAACCCAGCATTACA GGCTGCTGTT GATA ATCAGCAGCC TACTTTTGCTCTATT TERM 946 850217 - 850240 + G 79 -11 -3.17875 | opp_overlap 850217, overlap 850207 850207 850215 850214 TAACCCAGCATTACA GGCTGCTGTT GATA ATCAGCAGCC TACTTTTGCTCTATT TERM 947 850359 - 850343 - g 73 -2.3 -5.27477 | AGTGGAATTAAAAAA TGAATTA GAG CAACTCA ATATTCCGTTGATCG TERM 948 851135 - 851125 - g 70 -8.2 -3.71649 | opp_overlap 851125 851124 GGTGTAAAGGTGAAA CGGG CTT CCCG ATTGTTGATGCAGCA phr 850143 - 851582 + | deoxyribodipyrimidine photolyase Phr, FAD-binding TERM 949 851593 - 851636 + F 77 -10 -2.98907 | gap 1, opp_overlap 851603, overlap 851592 GTTAACCACGCTTGA GTAT-GATTAATACATCTATT ACT AAGAGATGTATTAATCGATGC CTTTACCTTTTGTTC TERM 950 853070 - 853054 - g 88 -10.9 -4.11692 | TATTGATGCTGAAAA CTGGATG GCA CATCCAG GCTCTGCAAATACCT VF_A0754 851633 - 853486 + | peptide-methionine (S)-S-oxide reductase VF_A0755 853649 - 853512 - | hypothetical protein VF_A0756 853842 - 854789 + | putative lipoprotein TERM 951 854838 - 854802 - T 93 -5.3 -6.02345 | gap 1, opp_overlap 854802 854797 TAATCATAAAAAAAA CCACCTACC-TTTGAC GGGGGA GTAAAAAGGTAAGTGG TTTTGGTATTTTTTT VF_A0757 855378 - 854860 - | hypothetical protein VF_A0758 855881 - 855378 - | hypothetical protein VF_A0759 856398 - 855829 - | hypothetical protein TERM 952 856350 - 856317 - GR 87 -9.7 -4.04157 | GTAATAAAAAAGGAA TGGCTTGCTGC TTGTAAATAATG GCAGCAAGCCA GGCAAGCTGAAACCA cfa 857740 - 856484 - | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) TERM 953 857296 - 857312 + g 74 -3.7 -5.10461 | opp_overlap 857296 TTTCATTCCCTAAAT CATAATG AGC CAGTATG TTTTTCTTCGATCCA VF_A0761 858501 - 857749 - | plasmid partition ParA protein TERM 954 858457 - 858437 - G 91 -11.9 -4.12188 | TCACGAGTTTGAAAA CGGCGATGT CTA ACATCACCG TGATAAATACAGGAA VF_A0762 859796 - 858498 - | putative dehydrogenase VF_A0763 860494 - 859754 - | short chain dehydrogenase VF_A0764 860958 - 860491 - | transcriptional regulator TERM 955 860974 - 861019 + r 100 -15.3 -3.74158 | gap 1, opp_overlap 860982 860989, overlap 860977 860982 860989 ACACCTATATACGCT TAGTGAAATATAAAAGATCACA TCC TGTGATCTTTTATATT-CATTA TTTAAGTATGGTTGC TERM 956 860977 - 861016 + r 100 -14.8 -3.99315 | gap 1, opp_overlap 860982 860989, overlap 860974 860982 860989 CCTATATACGCTTAG TGAAATATAAAAGATCACA TCC TGTGATCTTTTATATT-CA TTATTTAAGTATGGT TERM 957 861012 - 860982 - R 100 -15.8 -3.65529 | opp_overlap 860977 860974 860982 860989, overlap 860989 ATACGCTTAGTGAAA TATAAAAGATCACA TCC TGTGATCTTTTATA TTCATTATTTAAGTA TERM 958 860982 - 861012 + r 100 -15.8 -3.62723 | opp_overlap 860982 860989, overlap 860977 860974 860989 ATACGCTTAGTGAAA TATAAAAGATCACA TCC TGTGATCTTTTATA TTCATTATTTAAGTA TERM 959 860989 - 861005 + r 100 -9.5 -4.74767 | opp_overlap 860989 860982, overlap 860982 860977 860974 TAGTGAAATATAAAA GATCACA TCC TGTGATC TTTTATATTCATTAT TERM 960 861005 - 860989 - R 100 -9.5 -4.80455 | opp_overlap 860982 860977 860974 860989, overlap 860982 TAGTGAAATATAAAA GATCACA TCC TGTGATC TTTTATATTCATTAT chrR 861717 - 861034 - | zinc-binding anti-sigmaE4 factor ChrR rpoE4 862321 - 861710 - | RNA polymerase sigma factor VF_A0767 862543 - 862869 + | cytochrome c-554(548) VF_A0768 864068 - 862836 - | cysteine desulfhydrase TERM 961 863292 - 863272 - G 82 -8.3 -4.17089 | opp_overlap 863273 863273, overlap 863273 GCTAAAGCTTCAAAA CTTTGAGTC CCA GTCTCAAAG CGACCGGGACCAACA VF_A0769 864708 - 864052 - | agglutination protein VF_A0770 866140 - 864938 - | bicyclomycin resistance protein TERM 962 865905 - 865891 - G 76 -4.3 -5.10767 | GACCCAATATAAAAA TAGGA CGTCT TCCTA ACGCATCAGATAATG VF_A0771 866219 - 867091 + | LysR family transcriptional regulator VF_A0772 867186 - 867806 + | homogentisate export protein VF_A0773 868030 - 867839 - | hypothetical protein ycdX 868162 - 868908 + | putative hydrolase TERM 963 868950 - 868914 - T 100 -10.5 -4.42464 | gap 1, opp_overlap 868913 868912 868910 868921 868926, overlap 868918 AATGGTTTAAATAAA TTAA-TCAGGAAAGTG TATTAG CACTTTCCTGACTTAA ACTTAATTTAGCATA TERM 964 868945 - 868918 - T 95 -12.9 -3.75884 | opp_overlap 868913 868912 868910 868921 868926, overlap 868914 GTTTAAATAAATTAA TCAGGAAAGTG TATTAG CACTTTCCTGA CTTAAACTTAATTTA TERM 965 868921 - 868942 + T 72 -9.5 -2.55253 | opp_overlap 868918 868914, overlap 868913 868912 868910 868926 TAAATAAATTAATCA GGAAAGTGT ATTA GCACTTTCC TGACTTAAACTTAAT VF_A0775 870138 - 868966 - | short chain dehydrogenase VF_A0776 870755 - 870135 - | TonB protein VF_A0777 871159 - 870755 - | TonB system transport protein ExbD2 VF_A0778 871689 - 871156 - | TolQ protein TERM 966 871569 - 871555 - G 85 -2.8 -5.72207 | TGGAAAGTAAAAAAA CAAGTA AAT TACCCG CTCACCAACAAACAA VF_A0779 873041 - 871689 - | TolQ protein VF_A0780 873804 - 873043 - | hypothetical protein VF_A0781 875892 - 873877 - | iron-hydroxamate transporter permease subunit TERM 967 874313 - 874291 - G 74 -6.3 -4.41158 | overlap 874288 GATACAAACAAACAA TATCAACGC TGATT GCGCCGATA CTCGATACGTAGAAC VF_A0782 876839 - 875895 - | ferrichrome-binding protein VF_A0783 877600 - 876833 - | ferrichrome transport ATP-binding protein FhuC TERM 968 877357 - 877372 + g 76 -4.6 -5.0133 | overlap 877359 CTTCAGGTAACTTTT GGGGCA GAAA TGCCAC TTTTTTAGCAAACTC TERM 969 877689 - 877665 - R 82 -7.9 -4.5538 | opp_overlap 877665 877663 ATAAAATGCAGAAAA GAAGTACGCAA GAG CCACGTACTTC TCTCTATTTTTAAAT fhuA 879912 - 877714 - | ferrichrome outer membrane transporter VF_A0785 880956 - 880057 - | AraC family transcriptional regulator TERM 970 881046 - 881069 + r 100 -11 -4.11692 | opp_overlap 881046 TAGTAAAATAAAAAA CGGAAGACCC AACT GGATCTTCCG TTTTAAAAGTGAATC TERM 971 881069 - 881046 - R 100 -13.2 -5.83211 | opp_overlap 881046 TAGTAAAATAAAAAA CGGAAGACCC AACT GGATCTTCCG TTTTAAAAGTGAATC VF_A0786 882706 - 881096 - | PTS system, glucose-specific II BC component TERM 972 882171 - 882155 - G 79 -5.1 -5.14563 | opp_overlap 882154, overlap 882157 GTTTCCACTAAAAAA TGCCAGA TAA TCTGGTA ACTGTTTATTTGAGT TERM 973 882980 - 882941 - R 100 -13.8 -4.27584 | opp_overlap 882950, overlap 882950 ATGCCGAATTTAAAA CAAAAAAAATGGAAGCGA TGAG TCGCTTCCATTTAATTTG ATTAAAAGAAAATCA TERM 974 882971 - 882950 - R 100 -13.1 -6.34616 | opp_overlap 882950, overlap 882941 TTAAAACAAAAAAAA TGGAAGCGA TGAG TCGCTTCCA TTTAATTTGATTAAA TERM 975 882950 - 882971 + r 100 -13.1 -4.14598 | opp_overlap 882941 882950 TTAAAACAAAAAAAA TGGAAGCGA TGAG TCGCTTCCA TTTAATTTGATTAAA ybiT 884571 - 883000 - | ABC transporter ATP-binding protein TERM 976 884650 - 884633 - R 93 -7 -5.43414 | opp_overlap 884633 ATGAGACAGAAAAAA GCTGGT ACAAAA ACCAGC TTTTCAAATTTAGGG TERM 977 884633 - 884650 + r 75 -7 -4.24002 | opp_overlap 884633 ATGAGACAGAAAAAA GCTGGT ACAAAA ACCAGC TTTTCAAATTTAGGG TERM 978 884683 - 884696 + r 82 -5.3 -5.33331 | AGTATAGCAGCATTT GTGAT TTCC ATCAC TTTTTATTCTGTTTC VF_A0788 885124 - 884720 - | hypothetical protein TERM 979 885338 - 885317 - R 93 -7.3 -5.40625 | opp_overlap 885317 ACAGTACATAAAAAA GGCCTAAAC CGAA GTCTAAGCC TTAATCATCTTAATT VF_A0789 885839 - 885354 - | lactoylglutathione lyase VF_A0790 886662 - 886006 - | chloramphenicol acetyltransferase TERM 980 887533 - 887522 - g 70 -3 -5.1502 | ACAAACAAAAAGAAA TGAA ATCG TTCA ATTAATCCCAAGTTG VF_A0791 886752 - 887660 + | LysR family transcriptional regulator TERM 981 887708 - 887726 + T 89 -8.8 -4.31043 | opp_overlap 887708 CTGAAAAACAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT TERM 982 887726 - 887708 - T 100 -11 -5.93252 | opp_overlap 887708 CTGAAAAACAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT VF_A0792 888784 - 887939 - | proline iminopeptidase VF_A0793 888886 - 889788 + | LysR family transcriptional regulator TERM 983 889890 - 889908 + T 89 -8.8 -4.31043 | opp_overlap 889890 TATAAAACAAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT TERM 984 889908 - 889890 - T 100 -11 -6.14618 | opp_overlap 889890 TATAAAACAAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT ackA2 891133 - 889937 - | acetate kinase TERM 985 890109 - 890092 - G 73 -7.1 -4.0219 | CAACAAAACCAAGAA TCTTAAG GTTG CTTAAGA TCTCACGACGGATTG VF_A0795 891440 - 892435 + | two component response regulator adrA 892435 - 893397 + | GGDEF domain-containing protein TERM 986 893433 - 893452 + T 75 -8.6 -3.50853 | opp_overlap 893433 CTAGACAGAAAAAAA CCGAAGTG ATAA TACTTCGG TTCTGATTACAACAA TERM 987 893452 - 893433 - T 93 -7.9 -5.76633 | opp_overlap 893433 CTAGACAGAAAAAAA CCGAAGT GATAAT ACTTCGG TTCTGATTACAACAA malG 894502 - 893612 - | maltose transporter permease malF 896115 - 894571 - | maltose transporter membrane protein malE 897445 - 896261 - | maltose ABC transporter periplasmic protein TERM 988 897046 - 897069 + g 72 -3.2 -5.08367 | gap 1 TAAGAGATACAGATT CAATAGC-TAC AGG GTAAGCAATTG TTTTTCCTTTGTATT malK 897854 - 898963 + | maltose/maltodextrin transporter ATP-binding protein TERM 989 899006 - 898984 - f 100 -7 -6.07374 | opp_overlap 898986, overlap 898986 ACAAAAAATAAAAAA GAGCCCAACA ATG TATTGGGCTT TTGTTGTTTTATGCC TERM 990 899004 - 898986 - f 100 -9.6 -4.6155 | opp_overlap 898986, overlap 898984 AAAAAATAAAAAAGA GCCCAACA ATG TATTGGGC TTTTGTTGTTTTATG TERM 991 898986 - 899004 + F 88 -7.4 -5.12916 | opp_overlap 898986 898984 AAAAAATAAAAAAGA GCCCAACA ATG TATTGGGC TTTTGTTGTTTTATG glgX 899076 - 901031 + | glycogen debranching enzyme TERM 992 901073 - 901092 + T 100 -12.2 -4.7497 | opp_overlap 901073 GTATATAATAAAAAA GGAGGCTA ATAA TAGCCTCC TTTTTAGTAACTAAG TERM 993 901092 - 901073 - T 100 -12.2 -5.60689 | opp_overlap 901073 GTATATAATAAAAAA GGAGGCTA ATAA TAGCCTCC TTTTTAGTAACTAAG cheV2 902332 - 901391 - | CheW/CheY hybrid protein CheV2 sstT 902525 - 903766 + | serine/threonine transporter SstT TERM 994 903824 - 903788 - T 100 -16.2 -3.61001 | gap 1, opp_overlap 903795, overlap 903795 GTTTATAAAAACACA TA-AAAAATGGCCGCTC GTTT GAGCGGCCATTTTTATA TTAAAATACCAACCT TERM 995 903816 - 903795 - T 100 -15.9 -5.53079 | opp_overlap 903795, overlap 903788 AAAACACATAAAAAA TGGCCGCTC GTTT GAGCGGCCA TTTTTATATTAAAAT TERM 996 903795 - 903816 + T 100 -15.9 -5.09762 | opp_overlap 903795 903788 AAAACACATAAAAAA TGGCCGCTC GTTT GAGCGGCCA TTTTTATATTAAAAT VF_A0804 904500 - 903838 - | permease TERM 997 904597 - 904579 - R 93 -7.4 -5.46706 | opp_overlap 904579 ACCGCAAAATAAAAA GGAAGACA TTA CGCCTTCC TTTAAAAGTTAACTC glgA 906127 - 904628 - | glycogen synthase TERM 998 905998 - 906030 + gr 83 -6.2 -5.06816 | opp_overlap 905993, overlap 906000 CTTTTAATGACTTAG GCAGAGCCTTGGCA ACATC TGCCAAGCCTCCAC TTTTTATTAACCCGT glgC 907298 - 906081 - | glucose-1-phosphate adenylyltransferase TERM 999 906130 - 906142 + gH 83 -6.3 -4.94147 | ACAATACCCTCATCT GATAC GTG GTATC TTTTCTTATCTTCTT VF_A0807 907592 - 908245 + | hypothetical protein TERM 1000 908291 - 908318 + T 89 -7.8 -5.30155 | gap 1, opp_overlap 908291 TTCTTTTAATAAAAA GCCCT-AAATCAG AAA CTGACTTGAGGGC TTTTTTCATTCATAC TERM 1001 908318 - 908291 - T 100 -10 -5.06414 | gap 1, opp_overlap 908291 TTCTTTTAATAAAAA GCCCT-AAATCAG AAA CTGACTTGAGGGC TTTTTTCATTCATAC glgB 910491 - 908344 - | glycogen branching enzyme TERM 1002 909465 - 909455 - G 73 -5.4 -4.51743 | GGATCATTAAACAAA GATG TTC CATC AAAATTCGCCAAACC TERM 1003 910341 - 910323 - G 79 -5.2 -5.10767 | overlap 910325 CATTTAATACAAAAA TACCCGAA TGT CTCGGGTC TGAAAGCAATTGATA TERM 1004 910339 - 910325 - G 77 -7.8 -4.17211 | overlap 910323 TTTAATACAAAAATA CCCGAA TGT CTCGGG TCTGAAAGCAATTGA TERM 1005 910489 - 910472 - G 90 -9.1 -4.92783 | AATGGATCAGAAAAA GCAGCCC TTTC GAGCTGC ATGTAGATGTCCTTT malQ 912761 - 910545 - | 4-alpha-glucanotransferase TERM 1006 912739 - 912757 + g 90 -13.2 -2.85004 | overlap 912736 912734 ATCGCTTTTCTCCAA GGGCAGTA CAA TACTGCCC TCATATTATAATTTT malP 915231 - 912778 - | maltodextrin phosphorylase TERM 1007 913645 - 913657 + g 87 -4.9 -5.42198 | TTGAACCCAATTAGC TAAAC GCT GTTTA TTTTGTTTTTTCACA TERM 1008 915126 - 915137 + g 73 -2.2 -5.21709 | CTAAATACCATACTT TAGC GCTC GCTG TTTTTTCATCTGCAG TERM 1009 918065 - 918050 - g 73 -7.6 -4.0031 | AGCGCTATCAAATAA TGAACG TTCT CGTTCA GCTCACTTCGATGAA malT 915627 - 918332 + | transcriptional regulator MalT TERM 1010 918361 - 918400 + F 84 -5.3 -5.42975 | gap 1, overlap 918386 ATTTTTTACACAGAA CTTATGTATAAT-CATGG CATCT TCATGCATTGTGCATAAG TTTTTATTTGTATCG VF_A0812 918423 - 919349 + | integral membrane protein TERM 1011 919419 - 919378 - T 79 -9.8 -3.33419 | gap 1, opp_overlap 919389, overlap 919380 919389 ACTGGTAAATCAATA GATACAAAAAA-GGAGCAT TCAAT ATGCTCCTTTTTTTACATC TGTAATACTACTGAT TERM 1012 919415 - 919380 - T 79 -10.1 -3.2313 | gap 1, opp_overlap 919389, overlap 919378 919389 TGGTAAATCAATAGA TACAAAAAAGGAGCAT TCAAT ATGCTCCTTTTTT-TA CATCTGTAATACTAC TERM 1013 919389 - 919407 + T 95 -8.9 -5.51402 | opp_overlap 919380 919378 919389 AATAGATACAAAAAA GGAGCAT TCAAT ATGCTCC TTTTTTTACATCTGT TERM 1014 919407 - 919389 - T 95 -8.9 -5.46276 | opp_overlap 919389, overlap 919380 919378 AATAGATACAAAAAA GGAGCAT TCAAT ATGCTCC TTTTTTTACATCTGT focA 920288 - 919440 - | formate transporter TERM 1015 920431 - 920410 - R 82 -3.2 -5.75599 | TAAAGTATAAAAAAA TATTTATT GAAACT AATAAATA AGCATTGATTAAGTA VF_A0814 920642 - 920457 - | hypothetical protein tag 921262 - 920693 - | 3-methyl-adenine DNA glycosylase I, constitutive TERM 1016 920853 - 920887 + g 81 -6.7 -4.72986 | gap 1, opp_overlap 920859 920863, overlap 920854 920856 TCGGTTGTTGCAGGT AC-ATCATTAATCACT TCCC AGTGATTAATGATCGG TTTTTGATCGACATA TERM 1017 920854 - 920886 + g 77 -10.2 -3.4331 | gap 1, opp_overlap 920859 920863, overlap 920853 920856 CGGTTGTTGCAGGTA C-ATCATTAATCACT TCCC AGTGATTAATGATCG GTTTTTGATCGACAT TERM 1018 920856 - 920883 + g 90 -13 -2.86601 | opp_overlap 920859 920863, overlap 920854 920853 GTTGTTGCAGGTACA TCATTAATCACT TCCC AGTGATTAATGA TCGGTTTTTGATCGA VF_A0816 921314 - 921820 + | hypothetical protein VF_A0817 921817 - 922377 + | Sco1-related protein VF_A0818 922358 - 922849 + | hypothetical protein TERM 1019 922945 - 922915 - f 80 -9.1 -3.55563 | opp_overlap 922904 ATTGTACCTGTCAAA CTGCATCCCATTA TCCTC TGATGAGATGCAG TTCACATGTATTATC TERM 1020 923031 - 923013 - f 73 -7.4 -3.75024 | TTCTATCATCAATAA GATGGCAG CTT CTGCTATC GAACCTAGCGCAATG TERM 1021 923489 - 923471 - g 75 -8.2 -4.10453 | opp_overlap 923470 TAAAGCGCTGGAAAA TGCCAATT ACT AACTGGCA ACTTATTTACATGCA VF_A0819 923014 - 923847 + | drug/metabolite exporter family protein TERM 1022 923878 - 923896 + T 83 -7.4 -4.72272 | opp_overlap 923878 TACATACATAATAAA GCCGAC TATTAAT GTCGGC TTTTTAGTACAAAGA TERM 1023 923896 - 923878 - T 81 -7.4 -4.4458 | opp_overlap 923878 TACATACATAATAAA GCCGAC TATTAAT GTCGGC TTTTTAGTACAAAGA rpoE3 924466 - 923921 - | RNA polymerase sigma factor SigZ TERM 1024 924545 - 924515 - R 79 -8.4 -4.06419 | opp_overlap 924520, overlap 924520 TGGCGGTACAAACAA CTTAAGGTAACCAA TAG TTGGTTACCTTGAT TAAAGTTTACTATTT TERM 1025 924540 - 924520 - R 93 -12.7 -3.35696 | opp_overlap 924520, overlap 924515 GTACAAACAACTTAA GGTAACCAA TAG TTGGTTACC TTGATTAAAGTTTAC TERM 1026 924520 - 924540 + r 93 -12.7 -3.3907 | opp_overlap 924520 924515 GTACAAACAACTTAA GGTAACCAA TAG TTGGTTACC TTGATTAAAGTTTAC VF_A0821 925287 - 924577 - | glutathione S-transferase TERM 1027 925395 - 925374 - R 100 -9.5 -6.09888 | opp_overlap 925374 TTTTAATAAAAAAAA TCCCCATCA AAGA TGATGAGGA TTAGATATGATTAAA VF_A0822 925681 - 925424 - | hypothetical protein VF_A0823 926578 - 925784 - | vulnibactin utilization protein ViuB vctC 927351 - 926590 - | ferric anguibactin transport ATP-binding protein VF_A0825 928310 - 927360 - | ferric anguibactin transport system permease protein FatC TERM 1028 927906 - 927933 + g 74 -4.2 -5.08601 | opp_overlap 927909 AAAAATCACCCCAAG CAACAATAAGGT AATT ACGTTACTGTTG TTTTTCTTGAAGTAA vctD 929194 - 928361 - | ferric anguibactin transport system permease protein FatD TERM 1029 929217 - 929243 + r 73 -8 -3.61103 | opp_overlap 929217, overlap 929210 CTCAGCCTGCACAAA GCGTGCTATCTC AGT GAAATAACACGC TTTACAGTAGAATTA TERM 1030 929243 - 929217 - R 95 -12.4 -3.86897 | opp_overlap 929210 929217 CTCAGCCTGCACAAA GCGTGCTATCTC AGT GAAATAACACGC TTTACAGTAGAATTA vctP 930173 - 929268 - | ferric anguibactin-binding protein TERM 1031 930242 - 930227 - R 74 -6.2 -4.51174 | TCACTATAATGAAAA TGGTTA TTAT TAACCA GAATAAAAAAGTAAA TERM 1032 930360 - 930333 - R 84 -5.7 -5.49234 | ATAGGCAATAAAAAA GGCCATTAT AGGGGGAATG ATAATGGCC TTAAAAATACATAGC VF_A1190 930618 - 930385 - | hypothetical protein TERM 1033 930605 - 930617 + g 83 -6.3 -5.1101 | overlap 930603 TTAATTGACCATTTA TGAGT CAT ACTCA TTTTTTCCATAATAA TERM 1034 930845 - 930823 - R 83 -4.9 -5.47431 | gap 1, opp_overlap 930823, overlap 930838 TTAACACATAAAAAA GGCG-CTGTA TTAA TACAAACGCC TTTGAATTACCACTT VF_A0828 931248 - 930886 - | glutaredoxin 2 TERM 1035 931402 - 931376 - R 100 -9.5 -6.02914 | opp_overlap 931376 TTTATATAAAAAAAA GCCTCAAAAGA AATCA TCTTATGAGGC TTTAAGTTTATCGTT TERM 1036 931376 - 931402 + r 85 -9.5 -3.90889 | opp_overlap 931376 TTTATATAAAAAAAA GCCTCAAAAGA AATCA TCTTATGAGGC TTTAAGTTTATCGTT putP 932930 - 931434 - | proline:sodium symporter VF_A0830 933747 - 933040 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 1037 933452 - 933465 + g 73 -2.3 -5.26918 | opp_overlap 933452 ATTTGACCAATCAAT GCAAC AACC GATGC TTTTTTATCCGATGT TERM 1038 933508 - 933492 - G 70 -2.9 -5.09225 | overlap 933494 ATGTGATGTAAAAAA CACCTCT TGG AGCGGTA TAAAGTTCATTACTT putA 936938 - 933762 - | proline dehydrogenase TERM 1039 935470 - 935458 - G 84 -7.7 -4.76123 | opp_overlap 935457 AAACGATGAACAAAA GAGCT GTT AGCTC CATTCTCTAATAAAC VF_A0833 937880 - 937098 - | AraC family transcriptional regulator TERM 1040 937132 - 937148 + g 83 -6.5 -5.14563 | overlap 937133 ATATTACGGTAGTGA CTGGGAG AAT CTCCCAC TTTTTTCATAAAAGC TERM 1041 937133 - 937147 + g 80 -10 -3.68256 | overlap 937132 TATTACGGTAGTGAC TGGGAG AAT CTCCCA CTTTTTTCATAAAAG TERM 1042 937419 - 937429 + g 85 -2.6 -5.86965 | GATCACATCTGGATT TAAA CGT TTTA TTTTTTTTGCTGAAT TERM 1043 938556 - 938532 - g 70 -5.8 -4.40993 | overlap 938534 TAGAAATGACCAAAA TCGACTACGT GATTT ACGTAATCAA AGTGATTCTTTAGAC VF_A0834 938314 - 940188 + | NirV precursor TERM 1044 940214 - 940239 + F 100 -14.1 -5.5604 | opp_overlap 940214 TCCATCAACAACAAA GCCGCTGAATA GTCA TGTTCAGCGGC TTTTTTATTACTTAA TERM 1045 940239 - 940214 - f 100 -11.9 -4.48713 | opp_overlap 940214 TCCATCAACAACAAA GCCGCTGAATA GTCA TGTTCAGCGGC TTTTTTATTACTTAA ybbM 940344 - 941132 + | inner membrane protein tas 941168 - 942220 + | oxidoreductase, NADP(H)-dependent aldo-keto reductase TERM 1046 942248 - 942282 + T 83 -5.8 -5.1861 | opp_overlap 942253, overlap 942253 ATGATCACCACATAG AAAAATGGCGCATC CTATCTT GATGCACCATTTTA TTTTTTAGTCCTAGG TERM 1047 942277 - 942253 - T 88 -7.9 -5.05601 | opp_overlap 942248 942253 CACCACATAGAAAAA TGGCGCATC CTATCTT GATGCACCA TTTTATTTTTTAGTC TERM 1048 942253 - 942277 + T 84 -5.7 -5.45813 | opp_overlap 942253, overlap 942248 CACCACATAGAAAAA TGGCGCATC CTATCTT GATGCACCA TTTTATTTTTTAGTC VF_A0837 945538 - 942485 - | putative ATPase involved in pili biogenesis VF_A0838 945861 - 946766 + | hypothetical protein TERM 1049 946785 - 946816 + T 100 -14.7 -4.74801 | opp_overlap 946785 946789, overlap 946789 GAATCCTGAAAAGCA TAAACCCGTTGAA CTCTCA TTCAACGGGTTTA TTTTTACTCAGCTTA TERM 1050 946816 - 946785 - T 100 -15.4 -3.09718 | opp_overlap 946785 946789, overlap 946789 GAATCCTGAAAAGCA TAAACCCGTTGAAC TCTC ATTCAACGGGTTTA TTTTTACTCAGCTTA TERM 1051 946789 - 946812 + T 100 -11.1 -4.91852 | opp_overlap 946785 946789, overlap 946785 CCTGAAAAGCATAAA CCCGTTGAA CTCTCA TTCAACGGG TTTATTTTTACTCAG TERM 1052 946812 - 946789 - T 100 -11.8 -4.208 | opp_overlap 946789 946785, overlap 946785 CCTGAAAAGCATAAA CCCGTTGAAC TCTC ATTCAACGGG TTTATTTTTACTCAG speB 947764 - 946838 - | agmatinase speA 949674 - 947764 - | arginine decarboxylase VF_A0841 949957 - 951216 + | 3-hydroxy-3-methylglutaryl-coenzyme A reductase TERM 1053 951268 - 951248 - T 90 -8.3 -5.36441 | opp_overlap 951248 TTTCCATATAAAAAA TGGCACTTA ATA TGAGTGCCA TTTCTTTTATTTGCT TERM 1054 951248 - 951268 + T 100 -10.5 -4.98352 | opp_overlap 951248 TTTCCATATAAAAAA TGGCACTTA ATA TGAGTGCCA TTTCTTTTATTTGCT TERM 1055 951281 - 951292 + T 70 -4.4 -4.78157 | CCATTTCTTTTATTT GCTA TATC TAGC TTTATTATTTTTGCT blc 951827 - 951297 - | outer membrane lipoprotein (lipocalin) TERM 1056 951341 - 951374 + g 76 -9 -3.73936 | opp_overlap 951341 TTGTTTTAAAACCAA GTGATTGAGCGGTT GATACA AAACGTTCAATCAC TTCTTGGTCCACTTT VF_A0843 952031 - 951912 - | hypothetical protein TERM 1057 951989 - 952002 + g 76 -3.1 -5.18726 | AACCAAAAATAAATT TGTGA CTAA TCGCA TTTTTATTATACGCA VF_A0844 952063 - 953214 + | outer membrane protein P1 precursor TERM 1058 953258 - 953222 - T 89 -7.4 -5.27335 | opp_overlap 953227, overlap 953203 953202 953227 CTTTTTAAAGAAAAA GTAAATGGCCTACCAA TTGAG TTGGTAAGCCATTTTA ATTTGTTGGATCGTT TERM 1059 953227 - 953253 + T 100 -10.2 -4.67942 | opp_overlap 953222 953227 TAAAGAAAAAGTAAA TGGCCTACCAAT TGA GTTGGTAAGCCA TTTTAATTTGTTGGA TERM 1060 953253 - 953227 - T 100 -11.7 -4.46652 | opp_overlap 953227, overlap 953222 TAAAGAAAAAGTAAA TGGCCTACCAA TTGAG TTGGTAAGCCA TTTTAATTTGTTGGA VF_A0845 954078 - 953272 - | hypothetical protein VF_A0846 954299 - 955489 + | hypothetical protein TERM 1061 955515 - 955503 - T 72 -4.9 -4.68919 | overlap 955498 AAAGAGAAACTAAAA TTTAC AAT GTAAA CTTCAAAAATTAAAA TERM 1062 955557 - 955532 - T 83 -6.2 -5.18355 | opp_overlap 955522 955532 TTCAAAAATTAAAAA GCCATAAATG ATCCTA CATTTAAGGC TTTTTATTTAATTAT TERM 1063 955532 - 955557 + T 84 -6.2 -5.39681 | opp_overlap 955532, overlap 955522 TTCAAAAATTAAAAA GCCATAAATG ATCCTA CATTTAAGGC TTTTTATTTAATTAT TERM 1064 955612 - 955595 - T 72 -2.7 -5.2189 | TTAACTATTAAAAAA TAACAGA TTAT TCCGCTA TTTTTGGAATGGATA astB 956944 - 955610 - | succinylarginine dihydrolase TERM 1065 957557 - 957579 + G 77 -9.9 -3.56318 | overlap 957556 TCATCTCTACTTGGT GCACTACCA GGCTG TGGTGGTGC TATTGTTGTTACGAC VF_A0848 957269 - 958456 + | hypothetical protein TERM 1066 958534 - 958512 - T 100 -10.6 -4.73973 | opp_overlap 958512 AGATAAAACAACAAA GGCGACAATA TAA TAATGTCGCC TTTTGTATTAAAACG TERM 1067 958512 - 958534 + T 100 -10.6 -4.66537 | opp_overlap 958512 AGATAAAACAACAAA GGCGACAATA TAA TAATGTCGCC TTTTGTATTAAAACG yghU 959425 - 958565 - | putative glutathione S-transferase YghU TERM 1068 959878 - 959891 + G 78 -3.8 -5.28826 | opp_overlap 959878, overlap 959873 959872 TAGCTTTCTACATTA CACC TGTAAT GGTG TTTTTTATGGGCTTT VF_A0850 959580 - 960431 + | chloramphenicol-sensitive protein RarD VF_A0851 961287 - 960418 - | transcriptional regulatory protein TERM 1069 960467 - 960481 + g 70 -3.6 -4.91109 | overlap 960468 TCAAACTCTTCGTTT TCATTT AAA AAATGG TTTTTGTGGTAACGA ydcR 961400 - 962554 + | fused DNA-binding transcriptional regulator/ amino transferase VF_A0853 962591 - 963715 + | zinc-carboxypeptidase precursor TERM 1070 963745 - 963726 - T 100 -12.2 -5.93252 | opp_overlap 963726 TGTAAAAATAAAAAA GCCGATCT TAGT AGATCGGC TTTTTGATAAAGTTC TERM 1071 963726 - 963745 + T 100 -12.2 -4.74801 | opp_overlap 963726 TGTAAAAATAAAAAA GCCGATCT TAGT AGATCGGC TTTTTGATAAAGTTC VF_A0854 964781 - 964137 - | hypothetical protein VF_A0856 965251 - 964868 - | hypothetical protein TERM 1072 965490 - 965464 - g 74 -3.8 -5.01553 | AAGCGACAAATAAAA GTTCTTTTTC AACATCA GAACAAGAAC TACAGTTAGAAACAC VF_A0857 965433 - 965774 + | transcriptional repressor SmtB TERM 1073 965782 - 965804 + F 76 -4.1 -5.11033 | opp_overlap 965784, overlap 965784 TGATGTAATACGAAT AACGCCGTT TAGAT AATGGCGTA TTTTTTGACATTCTC TERM 1074 965784 - 965802 + F 71 -6.7 -4.17355 | opp_overlap 965784, overlap 965782 ATGTAATACGAATAA CGCCGTT TAGAT AATGGCG TATTTTTTGACATTC VF_A0858 965865 - 966917 + | arsenical-resistance protein ACR3 TERM 1075 966950 - 966925 - T 100 -11.3 -4.8622 | opp_overlap 966925 TCCTTTAATCAAAAA TAGCCTTTAGC TTTC ACTAAAGGCTA TTTTTTTATCGTCTC TERM 1076 966925 - 966950 + T 100 -10.6 -5.69473 | opp_overlap 966925 TCCTTTAATCAAAAA TAGCCTTTAG CTTTCA CTAAAGGCTA TTTTTTTATCGTCTC VF_A0859 968850 - 966976 - | methyl-accepting chemotaxis protein TERM 1077 969012 - 968991 - H 78 -2.3 -5.65177 | ACATCTACAAAAAAA TCAATACCA AAAA TAGTGTTGA TAAAATAAATTTCTT TERM 1078 969436 - 969424 - g 79 -4.9 -5.05116 | TCATAAATAATAAAA GTTAT GTG ATAAC CATTCCCGAAAGTAA VF_A0860 969354 - 969836 + | hypothetical protein VF_A0861 969839 - 970297 + | hypothetical protein TERM 1079 970364 - 970346 - f 71 -9 -3.07962 | GCTTATATGGTAACA TGATGTAA ATT TTACATCA CATTAGGTTATATCA norR2 970385 - 971920 + | anaerobic nitric oxide reductase transcription regulator TERM 1080 973043 - 973025 - g 85 -3.8 -5.63103 | CCTGAACTAAAAAAA TACCCTCA CCT TGTAGGTA ACTACGGCAGCGCAT TERM 1081 973314 - 973328 + G 80 -10 -3.62046 | opp_overlap 973312 GTAACGCACTAATGG CTGCAG CTC CTGCAG TTGTTGAGCAAGTAA hcp 972161 - 973822 + | hydroxylamine reductase TERM 1082 973849 - 973868 + F 100 -10 -4.66609 | opp_overlap 973849 AAATCCATCAAGTTA TGCCTCAG TTAT CTGGGGCA TTTTTCGCTAGCGTG TERM 1083 974585 - 974567 - g 73 -6.8 -4.15222 | ATGCGGCCCAACAAA TTTCATGC AGG ACATGAAA AAATATGTTGAAGCA hcr 973917 - 974948 + | HCP oxidoreductase, NADH-dependent TERM 1084 974935 - 974953 + T 70 -4.6 -4.78572 | overlap 974930 AAAGTGATGTTGAAG TGAGTTTA GTT TAATCTCA TTTTATTCATTCCAA TERM 1085 975324 - 975306 - T 80 -6.7 -4.78752 | ACCATAAGTCAAAAA CCGAGCT TACTT AACTCGG CGCTTTTTATAAAAA TERM 1086 976340 - 976309 - T 73 -8.9 -3.17598 | opp_overlap 976315, overlap 976306 976311 976315 ATTTTGACAAAATGA TATTAATGGCCAA TTTTAT TTGGCCATTAATT GAACATACTTCATAG TERM 1087 976338 - 976311 - T 84 -11.5 -3.14587 | opp_overlap 976315, overlap 976309 976306 976315 TTTGACAAAATGATA TTAATGGCCAA TTTTAT TTGGCCATTAA TTGAACATACTTCAT VF_A0865 978273 - 976378 - | methyl-accepting chemotaxis protein TERM 1088 978582 - 978569 - R 76 -3.9 -5.31275 | opp_overlap 978569, overlap 978550 978544 TTTTATTACAAAAAA TAGTT TTAT AACTA TCATTACTATATAAA tcpF 979534 - 978674 - | toxin coregulated pilus biosynthesis protein TcpF tcpE 980584 - 979538 - | toxin coregulated pilus biosynthesis protein TcpE tcpT 982031 - 980538 - | toxin coregulated pilus biosynthesis protein TcpT TERM 1089 981142 - 981170 + gr 71 -4.8 -4.63486 | gap 1 GATGAACGAATCGCT TCAGAAAATAGGT TTGA ACC-ATTTTTTGA TTTTGTTACAGAACT TERM 1090 981982 - 982018 + gr 83 -6.9 -4.70319 | opp_overlap 981994, overlap 981969 981984 981984 981994 TAGATTACACCGTGG TCTTTAAAAAAATCAAA ACC TTTGATTTTTTTTAAAA TTTTAATTTTCATAG TERM 1091 981984 - 982016 + gr 72 -9.5 -2.63579 | opp_overlap 981994, overlap 981982 981984 981994 GATTACACCGTGGTC TTTAAAAAAATCAAA ACC TTTGATTTTTTTTAA AATTTTAATTTTCAT TERM 1092 982006 - 981994 - GR 87 -4.9 -5.40072 | opp_overlap 981984 981984 981982 981994 TGGTCTTTAAAAAAA TCAAA ACC TTTGA TTTTTTTTAAAATTT TERM 1093 981994 - 982006 + gr 100 -4.9 -5.82388 | opp_overlap 981994, overlap 981984 981984 981982 TGGTCTTTAAAAAAA TCAAA ACC TTTGA TTTTTTTTAAAATTT tcpS 982477 - 982028 - | toxin coregulated pilus biosynthesis protein TcpS TERM 1094 982063 - 982076 + g 70 -3.1 -4.87389 | AACCTTTTGATATAA CGACA TTTC TGTTG TTTATTTTTAACCTC tcpD 983270 - 982491 - | toxin coregulated pilus biosynthesis protein TcpD VF_A0871 983737 - 983258 - | hypothetical protein tcpC 985178 - 983724 - | toxin coregulated pilus outer membrane protein TcpC TERM 1095 984646 - 984634 - G 79 -5.5 -4.99861 | overlap 984635 984638 GATGAAGCAGAAAAA CCACC AGA GGTAG CACCACTGCCGACAG tcpQ 985695 - 985183 - | toxin coregulated pilus biosynthesis protein TcpY/TcpQ tcpB 987037 - 985700 - | toxin coregulated pilus biosynthesis protein TcpB tcpA 987683 - 987057 - | toxin coregulated pilin subunit precursor TcpA TERM 1096 987997 - 988020 + G 86 -7.6 -5.1286 | opp_overlap 987999 TGAAGTAAGTCACAC TATAGAGCAA CCAT TTGTTCTATA TTTTTCTGGTTTTTC VF_A0876 987944 - 988717 + | hypothetical protein TERM 1097 988754 - 988727 - T 82 -10 -3.5292 | opp_overlap 988727, overlap 988723 988719 ATATAAATTAATTAA TGGTGATATCCA TTTC TGTATATCACCA TTTGTTTAGAACAAT TERM 1098 988727 - 988754 + T 100 -10 -4.41616 | opp_overlap 988727 988723 988719 ATATAAATTAATTAA TGGTGATATCCA TTTC TGTATATCACCA TTTGTTTAGAACAAT VF_A0877 989463 - 988822 - | chromosome partitioning protein ParA TERM 1099 989827 - 989817 - g 87 -3.2 -5.78622 | GCATCGGAAAAAAAA TGAC TAT GCCA TACGTTGATTCAGAT VF_A0878 989657 - 990007 + | hypothetical protein VF_A0879 991449 - 990562 - | EAL domain-containing protein VF_A0880 991828 - 992679 + | putative AraC-type HTH DNA-binding protein VF_A0881 996433 - 992699 - | cellulose synthase operon C protein TERM 1100 994661 - 994672 + g 76 -2.2 -5.52079 | opp_overlap 994653 TAAATTAGATGTCAT TGCA TCAC TGCG TTTTTCTTTTGATAT TERM 1101 995820 - 995843 + g 77 -6 -4.5187 | opp_overlap 995820 995821 TACGCTAATTGGAAA TCAGGTACAC CTGG GTGTTCTTGA TTTAGTTTTTTTAAG bcsZ 997602 - 996424 - | endo-1,4-D-glucanase bcsB 999896 - 997602 - | cellulose synthase regulator protein TERM 1102 998094 - 998107 + g 71 -3.9 -4.89838 | opp_overlap 998094, overlap 998096 ATTCGATGCAACTAA TTGAA TATT TTCAA TTTTCTCTTTATTAA TERM 1103 998414 - 998404 - G 75 -5.4 -4.72486 | GAGAAACCTGAAAAA TCGA TGG TCGA ATCTGAATTGATTAC bcsA 1002513 - 999910 - | cellulose synthase catalytic subunit TERM 1104 999938 - 999953 + g 71 -7.6 -3.92963 | opp_overlap 999937 999938 TTTTTTGGTTTAAAT GTGAGT AAGA ACTCAC TTGTTATAGTTATTA VF_A0885 1003287 - 1002517 - | hypothetical protein TERM 1105 1002692 - 1002672 - G 71 -6.9 -4.04549 | opp_overlap 1002670 CAAAATGTAAAAACA TAGGTAAGC ACT GCTTATCTA ACTCATATTTAAGCA bcsE 1003778 - 1005322 + | hypothetical protein VF_A1191 1005327 - 1005530 + | hypothetical protein TERM 1106 1006034 - 1006020 - g 81 -11.4 -3.06171 | opp_overlap 1006018 CTCAACAACCAGAGA GCGCAG AAA CTGCGC AAATTTCCGATCATC TERM 1107 1006278 - 1006307 + G 71 -7.1 -3.82205 | gap 1, overlap 1006279 TGTTTGATAATTTCA GCGCAGCGACCTCT TAT AGTGGTC-CTGCGG TTATTCGTCTATTAA TERM 1108 1006279 - 1006306 + G 77 -10.6 -2.886 | gap 1, overlap 1006278 GTTTGATAATTTCAG CGCAGCGACCTCT TAT AGTGGTC-CTGCG GTTATTCGTCTATTA TERM 1109 1006840 - 1006830 - g 73 -5.4 -4.52589 | TGCGTGGAGATAAAA TGCA AAT TGCA GGTATGCGTGAAATT bcsG 1005530 - 1007158 + | inner membrane protein TERM 1110 1007316 - 1007285 - T 100 -10.3 -4.95302 | overlap 1007287 TGAAAGATAATAAAA TACTGCTCAACAT TATTGC ATGTTGAGCAGTT AGCCATAATTTCAAC TERM 1111 1007314 - 1007287 - T 100 -12.9 -4.07559 | overlap 1007285 AAAGATAATAAAATA CTGCTCAACAT TATTGC ATGTTGAGCAG TTAGCCATAATTTCA VF_A0888 1007702 - 1007406 - | hypothetical protein TERM 1112 1007902 - 1007856 - H 89 -8.5 -4.55625 | gap 1, opp_overlap 1007859, overlap 1007857 1007859 1007860 ACCAATACTACAAAA GCATTATTATTGATATTGTCTA ATGT TAGACAATATCAATAA-AATAA TCATATAATTTATAG TERM 1113 1007901 - 1007857 - H 89 -12 -3.32291 | gap 1, opp_overlap 1007859, overlap 1007856 1007859 1007860 CCAATACTACAAAAG CATTATTATTGATATTGTCTA ATGT TAGACAATATCAATAA-AATA ATCATATAATTTATA TERM 1114 1007899 - 1007859 - H 91 -12.4 -3.21702 | gap 1, opp_overlap 1007859, overlap 1007857 1007856 1007860 AATACTACAAAAGCA TTATTATTGATATTGTCTA ATGT TAGACAATATCAATAA-AA TAATCATATAATTTA TERM 1115 1007899 - 1007860 - H 93 -14 -2.51936 | opp_overlap 1007859, overlap 1007859 1007857 1007856 ATACTACAAAAGCAT TATTATTGATATTGTCTA ATGT TAGACAATATCAATAAAA TAATCATATAATTTA tagD 1007930 - 1008436 + | lipid hydroperoxide peroxidase TERM 1116 1008974 - 1008957 - g 70 -3.5 -4.96848 | opp_overlap 1008960 TGTTGTAGATAAAAA CAATAAG ATAG CTTATTA TCAAAGAGTTCCTGA VF_A0890 1008436 - 1009047 + | thioredoxin peroxidase TERM 1117 1009062 - 1009083 + T 100 -13.1 -4.37506 | opp_overlap 1009062 ATTAAATCAAAAAAA TAGCCTGCT AATA AGCAGGCTA TTTCTCTTTCATAAT TERM 1118 1009083 - 1009062 - T 100 -13.1 -5.73563 | opp_overlap 1009062 ATTAAATCAAAAAAA TAGCCTGCT AATA AGCAGGCTA TTTCTCTTTCATAAT VF_A0891 1010412 - 1009204 - | methyl-accepting chemotaxis protein TERM 1119 1009393 - 1009403 + g 79 -5.4 -4.91511 | CGCAATAACAACACT TGAG TCA CTCA TTTTTCTAATACCCT TERM 1120 1011373 - 1011400 + r 73 -7.8 -3.82525 | gap 1, opp_overlap 1011373 TAAACTAACAAAAAA GCCCAAAGTAGTG ATT TAC-GCTTTGGGC TTATCTATTCTTTTC TERM 1121 1011400 - 1011373 - R 86 -4.9 -5.59655 | gap 1, opp_overlap 1011373 TAAACTAACAAAAAA GCCCAAAGTAGT GATTT AC-GCTTTGGGC TTATCTATTCTTTTC yjgK 1011906 - 1011436 - | hypothetical protein TERM 1122 1011788 - 1011766 - G 71 -7 -4.07486 | overlap 1011787 ATCAACAATAAAATA CACTGACTCA TCA TGAGGCAATG GGTAATTCCCAACCG VF_A0893 1012020 - 1013030 + | AraC family transcriptional regulator TERM 1123 1013121 - 1013081 - f 72 -5 -4.67904 | gap 1, opp_overlap 1013089 1013092, overlap 1013092 CAGGAAGGTTAAAAA GTAAGCAATA-AGAGTTCT AATT AGAACTCTACATTAATTAC TATTTGGTTTATGAA TERM 1124 1013109 - 1013092 - f 79 -8.5 -3.88541 | opp_overlap 1013092 1013089, overlap 1013081 AAAAGTAAGCAATAA GAGTTCT AATT AGAACTC TACATTAATTACTAT TERM 1125 1014310 - 1014281 - g 72 -8.7 -3.45849 | gap 1, overlap 1014285 1014302 GTTACACCAGGAGAA GCAACCGT-TACTG CAA CAGTAGACGGTCAC ATCGCTACCTCATCG VF_A0894 1013132 - 1014928 + | putative surface protein TERM 1126 1014951 - 1014980 + F 70 -7.3 -3.80419 | opp_overlap 1014951 1014948, overlap 1014952 ATATGTAATAAAGAT CCAAGAAAGTC TTTTTGTT GATTTTCTTGG TTCTTACTCTGTAAT VF_A0895 1015125 - 1015487 + | hypothetical protein VF_A0896 1015480 - 1016703 + | multidrug resistance protein A TERM 1127 1016717 - 1016749 + T 100 -12 -5.24129 | AAATACTTTCGTTTT GCCCTTCTGCTCAA CTCTC TCGAGCGGAGGGGC TTTTTTATAACCCCA TERM 1128 1016766 - 1016780 + T 82 -4.3 -5.5112 | TTTTTATAACCCCAT CCATT CCATA AATGG TTTTTTCTTACTCAA VF_A0897 1017617 - 1016754 - | LysR family transcriptional regulator VF_A0898 1017802 - 1018563 + | putative lipoprotein TERM 1129 1019244 - 1019229 - g 78 -4 -5.30155 | gap 1, opp_overlap 1019240, overlap 1019240 CCATTAACTAAAAAA CGTATGG AAA CCAT-CG ATGACGAAGTATTGG VF_A0899 1018614 - 1020134 + | arylsulfatase TERM 1130 1020156 - 1020179 + F 100 -11.1 -4.11692 | opp_overlap 1020136 1020156 1020153 1020152, overlap 1020175 CTAATTAACAATTCA TAGTGGCTC CAAATA GAGCCACTA TTTTAAAAATAAGTG TERM 1131 1020179 - 1020156 - f 84 -11.8 -2.68886 | opp_overlap 1020156 1020175, overlap 1020136 1020153 1020152 CTAATTAACAATTCA TAGTGGCTCC AAAT AGAGCCACTA TTTTAAAAATAAGTG TERM 1132 1020816 - 1020790 - g 70 -8.8 -3.3506 | opp_overlap 1020789 1020790 1020797, overlap 1020797 GGTAAACCGCCACAA CGCTAAACATCC ACT AGATGTTTATCG ATTCTTAACGAAAGA aslB 1020200 - 1021495 + | regulator of arylsulfatase activity VF_A0901 1021525 - 1022508 + | MoxR protein TERM 1133 1022574 - 1022553 - g 88 -3.7 -5.82281 | overlap 1022556 1022558 AAACAGATAAAAAAA CATTAGATC CTAG GATCCATTG TGACTACGCTCGTCT VF_A0902 1022516 - 1023478 + | MoxR protein VF_A0903 1023481 - 1024011 + | hypothetical protein VF_A1192 1024004 - 1025056 + | hypothetical protein TERM 1134 1026173 - 1026160 - g 80 -8.1 -4.4009 | overlap 1026163 CCTTATGGGATAAAA CCACC CAAT GGTGG ATGAACCTATGGTTA TERM 1135 1026396 - 1026414 + G 72 -3.2 -5.02606 | overlap 1026391 CAAAATGAATTAGAG CATCAA ACAAATA TTGATG TTTTATTATTTAATA TERM 1136 1026437 - 1026460 + G 75 -10.4 -3.04792 | opp_overlap 1026430 1026439 1026452, overlap 1026439 ATTTAATACTGCAAC TACTCTTGCT AGAC AGCGAGAGTA TCTTGCCGCTCGTGA VF_A0904 1025049 - 1026824 + | transporter VF_A0905 1026824 - 1028065 + | hypothetical protein TERM 1137 1029409 - 1029399 - g 89 -6.8 -5.25803 | AAGGCTTACAAAAAA TCCG TCC CGGA ATACAAGTTGAAGAA VF_A0906 1028288 - 1029442 + | acriflavin resistance periplasmic protein TERM 1138 1029980 - 1029968 - g 70 -5.5 -4.3534 | overlap 1029969 GTCGAACGATTAAAA CGCCT TGA AGGCA TGAGTGACATCACCT TERM 1139 1031887 - 1031875 - g 77 -7.7 -4.21607 | CTTAGTGAAGATAAA GCCAA TAT TTGGC CCTGATTCACTCATG VF_A0907 1029464 - 1032577 + | acriflavin resistance plasma membrane protein TERM 1140 1032642 - 1032600 - f 77 -9.5 -3.22068 | gap 1, opp_overlap 1032599 1032600 1032603, overlap 1032603 CAATATACTCATTAA CAATAAACCTACAATTGTAC TTTC ATACT-TTGTAGGTTTATTG ATTGCTATCTTTATT VF_A0908 1032676 - 1033431 + | putative lipoprotein VF_A0909 1034285 - 1033488 - | hypothetical protein TERM 1141 1034421 - 1034395 - R 84 -5.2 -5.54338 | TAATTAAAATAAAAA GACTGTACCTAA TGA TTTAATACAGTC TTTTAGTCACAGTTA VF_A0910 1034991 - 1034434 - | hypothetical protein TERM 1142 1034683 - 1034673 - G 85 -2.6 -5.79595 | opp_overlap 1034673 TCGTAAAAGAAAAAA TAAA CTG TTTA TCTTTTAATTGCGCC VF_A0911 1035102 - 1036010 + | LysR family transcriptional regulator VF_A1193 1036274 - 1036014 - | hypothetical protein TERM 1143 1036114 - 1036126 + g 71 -4.8 -4.55295 | TTCTCATAACTTACG GGGA CAAAA TCCC TTTGTTTATACGGAG TERM 1144 1036299 - 1036285 - H 70 -4.3 -4.74012 | opp_overlap 1036285 ATCATAAAATTAAAA GATCA TTGTG TGATC TGCTTACTCTCTTTT VF_A0912 1036450 - 1037229 + | ABC transporter ATP-binding protein VF_A0913 1037229 - 1038101 + | hypothetical protein TERM 1145 1038140 - 1038099 - T 100 -20.7 -5.14563 | opp_overlap 1038099 1038102 1038106 1038111, overlap 1038111 TGGTTGATTAAAAAA TAATAAATAAAAGGAGATC ATAT GATCTCCTTTTATTTATTA TTCTATGATTTCTAA TERM 1146 1038099 - 1038140 + T 100 -20.7 -3.66897 | opp_overlap 1038099 1038111, overlap 1038102 1038106 1038111 TGGTTGATTAAAAAA TAATAAATAAAAGGAGATC ATAT GATCTCCTTTTATTTATTA TTCTATGATTTCTAA TERM 1147 1038102 - 1038137 + T 100 -18 -3.94724 | opp_overlap 1038099 1038111, overlap 1038099 1038106 1038111 TTGATTAAAAAATAA TAAATAAAAGGAGATC ATAT GATCTCCTTTTATTTA TTATTCTATGATTTC TERM 1148 1038106 - 1038133 + T 100 -14.4 -4.55093 | opp_overlap 1038099 1038111, overlap 1038102 1038099 1038111 TTAAAAAATAATAAA TAAAAGGAGATC ATAT GATCTCCTTTTA TTTATTATTCTATGA TERM 1149 1038128 - 1038111 - T 100 -9.9 -5.20331 | opp_overlap 1038106 1038102 1038099 1038111, overlap 1038099 AAATAATAAATAAAA GGAGATC ATAT GATCTCC TTTTATTTATTATTC TERM 1150 1038111 - 1038128 + T 100 -9.9 -5.18297 | opp_overlap 1038111 1038099, overlap 1038106 1038102 1038099 AAATAATAAATAAAA GGAGATC ATAT GATCTCC TTTTATTTATTATTC ytfL 1039396 - 1038152 - | inner membrane protein TERM 1151 1039493 - 1039478 - R 73 -4 -5.20534 | ATTAAGTAATAAAAA CAACGT ACAT ACGTTA TTATTTTCCTACTCT TERM 1152 1039527 - 1039552 + r 100 -12.1 -4.12599 | opp_overlap 1039527 1039530, overlap 1039530 ATGCCTGATTTACAA TAAGGTCAATA ACTA TATTGACCTTA TTTTAAGCACTTGTT TERM 1153 1039552 - 1039527 - R 90 -12.1 -3.35798 | opp_overlap 1039527 1039530, overlap 1039530 ATGCCTGATTTACAA TAAGGTCAATA ACTA TATTGACCTTA TTTTAAGCACTTGTT TERM 1154 1039549 - 1039530 - R 81 -9.4 -3.8211 | opp_overlap 1039530 1039527, overlap 1039527 CCTGATTTACAATAA GGTCAATA ACTA TATTGACC TTATTTTAAGCACTT TERM 1155 1039530 - 1039549 + r 89 -9.4 -4.18164 | opp_overlap 1039527 1039530, overlap 1039527 CCTGATTTACAATAA GGTCAATA ACTA TATTGACC TTATTTTAAGCACTT VF_A0915 1040190 - 1039639 - | acetyltransferase TERM 1156 1040246 - 1040208 - R 89 -11.3 -3.3543 | opp_overlap 1040214, overlap 1040214 TAACTCCCTAAAAAG CAAAAATCGAATAGACC GTTAA AGTCTATTCGATTTCTA TAAAATAAAAAGAGT TERM 1157 1040214 - 1040240 + r 87 -9.6 -4.05033 | opp_overlap 1040214 1040208 CCTAAAAAGCAAAAA TCGAATAGAC CGTTAAA GTCTATTCGA TTTCTATAAAATAAA TERM 1158 1040240 - 1040214 - R 100 -10.3 -5.18355 | opp_overlap 1040214, overlap 1040208 CCTAAAAAGCAAAAA TCGAATAGACC GTTAA AGTCTATTCGA TTTCTATAAAATAAA VF_A0916 1041668 - 1040298 - | multidrug efflux pump VmrA VF_A0917 1041873 - 1042316 + | deoxycytidylate deaminase TERM 1159 1042341 - 1042323 - T 100 -13.2 -5.4593 | opp_overlap 1042323 TTAAAATAATAAAAA GCCGGATT AAT AATCCGGC TTTTTTATATTCTCT TERM 1160 1042323 - 1042341 + T 100 -13.2 -5.53436 | opp_overlap 1042323 TTAAAATAATAAAAA GCCGGATT AAT AATCCGGC TTTTTTATATTCTCT luxG 1043067 - 1042357 - | FMN reductase luxE 1044207 - 1043077 - | long-chain-fatty-acid ligase LuxE luxB 1045266 - 1044286 - | luciferase beta chain LuxB TERM 1161 1044829 - 1044815 - G 70 -2.8 -5.09245 | opp_overlap 1044824 GGAAAATTATAAAAA TCATTC TGT GGATGA CAATATCCTGTAGTT luxA 1046344 - 1045277 - | luciferase alpha chain LuxA luxD 1047290 - 1046367 - | acyl transferase TERM 1162 1047032 - 1046992 - G 75 -9.9 -3.34344 | opp_overlap 1047004, overlap 1046996 1046999 1047002 1047005 TTAGCTCTTAACCAA CCAACGACAATAAGTAAAC TAT GTTTACCTATTGACATCGA AAATTCATCTATTTG TERM 1163 1047028 - 1046996 - G 74 -9.3 -3.45366 | opp_overlap 1047004, overlap 1046992 1046999 1047002 1047005 CTCTTAACCAACCAA CGACAATAAGTAAAC TAT GTTTACCTATTGACA TCGAAAATTCATCTA TERM 1164 1047025 - 1046999 - G 81 -11.8 -2.87354 | opp_overlap 1047004, overlap 1046996 1046992 1047002 1047005 TTAACCAACCAACGA CAATAAGTAAAC TAT GTTTACCTATTG ACATCGAAAATTCAT TERM 1165 1047019 - 1047005 - G 71 -7.2 -3.90843 | opp_overlap 1047004, overlap 1047002 1046999 1046996 1046992 AACCAACGACAATAA GTAAAC TAT GTTTAC CTATTGACATCGAAA luxC 1048745 - 1047306 - | acyl-CoA reductase LuxC TERM 1166 1048474 - 1048484 + g 82 -4 -5.47218 | opp_overlap 1048474 GCCATTTCATCAGAA TATC CAA GATA TTTTTTTAACTCACG luxI 1049355 - 1048783 - | 3-oxo-C6-HSL autoinducer synthesis protein LuxI TERM 1167 1050099 - 1050089 - g 81 -5.4 -5.0917 | TTATCAAAAAATAAA TACG ACA CGTA AAAAGTCAGATTCTA luxR 1049571 - 1050323 + | autoinducer-binding transcriptional activator protein LuxR VF_A0926 1051165 - 1050365 - | hypothetical protein TERM 1168 1051051 - 1051034 - G 73 -7.7 -3.90574 | AACAATCACAGTAAA CGAACCA TTTT TGGTCCG AGAAATCCATTTACG VF_A0927 1051541 - 1051347 - | hypothetical protein yjiH 1051848 - 1052585 + | inner membrane protein TERM 1169 1052665 - 1052648 - g 70 -2.7 -5.03145 | GAAGGCGCTAAAAAA GGTTG GGTTATTG CAACC ACTTCAACGGTTCCT yjiG 1052585 - 1053052 + | hypothetical protein VF_A0930 1053062 - 1054186 + | carboxypeptidase G2 precursor TERM 1170 1054262 - 1054232 - T 93 -12.7 -3.42256 | opp_overlap 1054237, overlap 1054237 AGCTAGGTAACAACA TAAAACAGCGAGC ACTTG GCTCGCTGTTTTT TTATCTTTTTTAATC TERM 1171 1054237 - 1054257 + T 100 -12.6 -5.9667 | opp_overlap 1054232 1054237 GGTAACAACATAAAA CAGCGAGC ACTTG GCTCGCTG TTTTTTTATCTTTTT TERM 1172 1054257 - 1054237 - T 100 -12.6 -4.79752 | opp_overlap 1054237, overlap 1054232 GGTAACAACATAAAA CAGCGAGC ACTTG GCTCGCTG TTTTTTTATCTTTTT VF_A0931 1055076 - 1054291 - | transcriptional regulatory protein, AraC-like protein ybhB 1055618 - 1055100 - | kinase inhibitor VF_A0933 1056213 - 1055758 - | hypothetical protein TERM 1173 1056300 - 1056277 - H 100 -7.5 -5.93809 | opp_overlap 1056277 TTTTCATAAAAAAAA GCCACTTAG GACTAA CTAAATGGC TTTTGGCGCATACAC TERM 1174 1056389 - 1056377 - H 80 -6.3 -4.83269 | AGAGCACATGAAAAA GTGAA CAC TTCAC CCAGTATCCTTTCCC ygbA 1056449 - 1056838 + | hypothetical protein VF_A0935 1056835 - 1057716 + | LysR family transcriptional regulator VF_A0936 1057732 - 1058562 + | lipase/acylhydrolase family protein TERM 1175 1058570 - 1058592 + T 100 -10.6 -4.46112 | opp_overlap 1058549 1058570 TACCATAAATAAAAA CGGCTCATCT ATT AAATGAGCCG TTTATTTAAATAAGA TERM 1176 1058592 - 1058570 - T 100 -12.8 -5.40464 | opp_overlap 1058570, overlap 1058549 TACCATAAATAAAAA CGGCTCATCT ATT AAATGAGCCG TTTATTTAAATAAGA VF_A0937 1059271 - 1058618 - | phosphoglycolate phosphatase VF_A0938 1060039 - 1059425 - | threonine efflux protein VF_A0939 1060117 - 1060641 + | hypothetical protein TERM 1177 1060662 - 1060690 + T 100 -19 -4.99638 | opp_overlap 1060662 AAAAAGCATAAAAAA GGGCGCTTCCAA TCACC TTGGAAGCGCCC TTTTTATATCAATAT TERM 1178 1060690 - 1060662 - T 100 -19 -5.47914 | opp_overlap 1060662 AAAAAGCATAAAAAA GGGCGCTTCCAA TCACC TTGGAAGCGCCC TTTTTATATCAATAT fruA 1062450 - 1060717 - | fused fructose-specific PTS enzymes: iibcomponent/IIC components TERM 1179 1061804 - 1061787 - G 71 -6.9 -4.09243 | opp_overlap 1061787 1061786 CAGACGCTTGGAAAA CCGTCGC ATCA GCGAAGG CTTTATTCATCTCTT fruK 1063461 - 1062481 - | fructose-1-phosphate kinase fruB 1064601 - 1063465 - | bifunctional fructose-specific PTS IIA/HPr protein TERM 1180 1064681 - 1064668 - RH 74 -5.3 -4.64861 | GCCTTGCAAAACAAA CTGAA TCGA TTCAG CAAAGCACTCAAAAA TERM 1181 1064776 - 1064791 + rH 82 -7.6 -4.4767 | ACGCTTTTCAAATTT GCTGAA TCCT TTCAGC TTTTATACTGAATCG VF_A0944 1064927 - 1064787 - | hypothetical protein fruR 1064887 - 1065864 + | DNA-binding transcriptional regulator FruR VF_A0945 1066535 - 1065909 - | putative lipoprotein VF_A0946 1066984 - 1066541 - | hypothetical protein VF_A0947 1067469 - 1067221 - | hypothetical protein VF_A0948 1067856 - 1067512 - | hypothetical protein VF_A0949 1068479 - 1067862 - | putative lipoprotein VF_A0950 1069750 - 1068476 - | hypothetical protein VF_A0951 1070278 - 1069931 - | hypothetical protein TERM 1182 1069978 - 1069996 + g 73 -6.7 -4.17762 | TTTTACTTTGGTTTT GTTCTGG ACCAC CCAGAGC TTCTTTTGCAAACTC VF_A0952 1071075 - 1070275 - | hypothetical protein TERM 1183 1070409 - 1070427 + g 70 -8.2 -3.62762 | opp_overlap 1070409 TACTATCTTTAATTA GCATGTTC ATT GAATATGC TTCTAATTCTTCATT VF_A0953 1073116 - 1071080 - | VgrG protein VF_A0954 1073777 - 1073259 - | hemolysin co-regulated protein TERM 1184 1073914 - 1073904 - R 76 -4 -5.22137 | AATTATAAAATAAAA GTTT GAA AAAC AATCAAAGATTCTTG VF_A0955 1074666 - 1074016 - | SAM-dependent methyltransferase yidA 1074755 - 1075576 + | hydrolase TERM 1185 1075598 - 1075641 + T 100 -14.1 -3.96327 | opp_overlap 1075603, overlap 1075603 TACATAGATACAACT AAAAATAGCCCCTAGCATG AATAAA CATACTAGGGGCTATTTTA TTTCTGATAAAGACT TERM 1186 1075636 - 1075603 - T 100 -16.2 -4.9755 | opp_overlap 1075598 1075603 AGATACAACTAAAAA TAGCCCCTAGCATG AATAAA CATACTAGGGGCTA TTTTATTTCTGATAA TERM 1187 1075603 - 1075636 + T 100 -14 -5.02323 | opp_overlap 1075603, overlap 1075598 AGATACAACTAAAAA TAGCCCCTAGCATG AATAAA CATACTAGGGGCTA TTTTATTTCTGATAA yihN 1076965 - 1075667 - | transporter glpQ 1077750 - 1077007 - | glycerophosphoryl diester phosphodiesterase GlpQ (UgpQ) TERM 1188 1078110 - 1078084 - R 100 -11 -5.65513 | overlap 1078086 TAGTAAGTAAAAAAA TAGCACTTCATC TAA GATAAAGTGCCA TCACGTTGGTTTATG TERM 1189 1078108 - 1078086 - R 100 -11.4 -4.45473 | overlap 1078084 GTAAGTAAAAAAATA GCACTTCATC TAA GATAAAGTGC CATCACGTTGGTTTA mifB 1080101 - 1078131 - | diguanylate cyclase (GGDEF), inhibitor of flagellar motility TERM 1190 1078996 - 1079010 + g 75 -5.8 -4.77896 | GATAATTTTTCGTTA CTTAAT TCA ATTAAG TTTTTAGATTCATTC mifC 1081120 - 1080098 - | periplasmic protein that regulates MifA/B activity TERM 1191 1082392 - 1082382 - g 70 -5.4 -4.3623 | overlap 1082377 ACATGAAAAATCAAA CTTC TTT GAAG GCTTCTTAACTAAAG yjjI 1081519 - 1083045 + | hypothetical protein TERM 1192 1083110 - 1083128 + G 93 -9.6 -4.91285 | opp_overlap 1083105 1083110 TGAAAAAACAGGAAT GGTCAGTA AAG TGCTGACC TTTTCTTGTGTTGAT yjjW 1083054 - 1083965 + | pyruvate formate lyase activating enzyme TERM 1193 1084016 - 1084045 + T 100 -9.4 -5.73339 | opp_overlap 1084016 AATTCCTAATACAAA TAGCCAACACCA TCCCCC TTGTGTTGGCTA TTTTTTTATAGTTAT TERM 1194 1084045 - 1084016 - T 89 -9.4 -4.20025 | opp_overlap 1084016 AATTCCTAATACAAA TAGCCAACACCA TCCCCC TTGTGTTGGCTA TTTTTTTATAGTTAT VF_A0963 1085041 - 1084109 - | LysR family transcriptional regulator TERM 1195 1084316 - 1084305 - G 89 -4.4 -5.63517 | CTTGTAAATAAAAAA TCAG ATTG CTGA CACATAGCTGCTGCG VF_A0964 1085339 - 1085908 + | integral membrane protein TERM 1196 1086049 - 1086026 - g 95 -14 -3.65991 | opp_overlap 1086023 1086022 1086021 ATGTTTGTAATAGAA GCAGATCATC CTTG GATGATCTGC AGCCTATTTTACAGA TERM 1197 1086111 - 1086125 + G 70 -8.6 -3.29856 | TTATCGATACCATTT TAGAGC ATT GCTCTA TTCGCTCTTTTACTA nfsA 1086011 - 1086808 + | nitroreductase A VF_A0966 1086873 - 1088243 + | L-serine ammonia-lyase TERM 1198 1088415 - 1088400 - f 75 -9 -3.47615 | opp_overlap 1088400, overlap 1088398 CACAAATAGATAAGA GCGGAA AAAT TTCCGC TTTTTACTTTTTTAG TERM 1199 1088400 - 1088415 + F 95 -9 -5.25735 | opp_overlap 1088400 1088398 CACAAATAGATAAGA GCGGAA AAAT TTCCGC TTTTTACTTTTTTAG TERM 1200 1088726 - 1088739 + G 71 -3.9 -4.98255 | opp_overlap 1088726 CGATCTCGCTAACTA TAAAG TCGG CTTTA TTTTTGTAATTAACG VF_A0967 1088475 - 1089695 + | nucleoside permease NupC deoD3 1089718 - 1090437 + | purine nucleoside phosphorylase deoD-type; PNP TERM 1201 1090451 - 1090469 + F 95 -8.9 -5.04385 | AAAACATATCTTAGA GGCCAAT TAATC ATTGGCC TTTTTTCAAAGTGTA guaD 1090495 - 1091841 + | guanine deaminase TERM 1202 1091901 - 1091888 - f 71 -6.7 -4.09509 | ACGAACTGAGATAAA GCAGA ATAT TCTGC AACTCGCTCTTTATT VF_A0970 1091979 - 1092617 + | hypothetical protein fecE 1093409 - 1092630 - | vitamin B12 transport ATP-binding protein BtuD fecD 1094446 - 1093406 - | KpLE2 phage-like element; iron-dicitrate transporter subunit VF_A0973 1095363 - 1094446 - | ABC transporter, periplasmic component VF_A0974 1095484 - 1095612 + | hypothetical protein VF_A0975 1095602 - 1096138 + | adenosyltransferase TERM 1203 1096324 - 1096340 + F 74 -2.3 -5.4756 | ACCTCAATTGTTACA GTCAT GCAATAA ATGAC TTTTTTGTTAAACTT TERM 1204 1096536 - 1096508 - g 79 -6.9 -4.5464 | overlap 1096513 1096523 TAGAGATAAGTAAAA TAAAATCAGAACA AAG TGCTCTAATTTCA GCACAAAAAAAATAC TERM 1205 1096531 - 1096513 - g 80 -4.6 -5.19998 | overlap 1096508 1096523 ATAAGTAAAATAAAA TCAGAACA AAG TGCTCTAA TTTCAGCACAAAAAA TERM 1206 1097057 - 1097067 + G 85 -4 -5.56263 | opp_overlap 1097057, overlap 1097051 ACATGCTAATAAACA GTAA TAA TTAC TTTTTATTTTATGAT TERM 1207 1097907 - 1097895 - g 72 -9.1 -3.4285 | opp_overlap 1097894 CGAGTTAATGCATAA TGCCG ATG CGGCA ATGTATGACATCAAA VF_A0976 1096372 - 1097964 + | GGDEF domain-containing protein TERM 1208 1097987 - 1098023 + T 100 -16.7 -3.53091 | opp_overlap 1097993, overlap 1097988 1097990 TTTTATTACTGACTT ACATTACGCCCAAGCCA CTT TAGCTTGGGCGTAATGA TTTAAACGCCAACAT TERM 1209 1097988 - 1098022 + T 100 -20.2 -2.71712 | opp_overlap 1097993, overlap 1097987 1097990 TTTATTACTGACTTA CATTACGCCCAAGCCA CTT TAGCTTGGGCGTAATG ATTTAAACGCCAACA TERM 1210 1097990 - 1098020 + T 100 -17 -2.90496 | opp_overlap 1097993, overlap 1097988 1097987 TATTACTGACTTACA TTACGCCCAAGCCA CTT TAGCTTGGGCGTAA TGATTTAAACGCCAA TERM 1211 1098017 - 1097993 - T 100 -16.5 -2.64933 | opp_overlap 1097990 1097988 1097987 TACTGACTTACATTA CGCCCAAGCCA CTT TAGCTTGGGCG TAATGATTTAAACGC ynfM 1099198 - 1097990 - | transporter VF_A0978 1099285 - 1100154 + | LysR family transcriptional regulator VF_A0979 1100366 - 1100977 + | hypothetical protein TERM 1212 1101178 - 1101138 - f 100 -10.7 -5.18866 | opp_overlap 1101141 1101170, overlap 1101139 1101170 CTTAAATAAATAAAA CGATGAGCACGTACTAT ATTTATA ATAATACATGCTCATCA ATTGGAGAGCATTGC TERM 1213 1101177 - 1101139 - f 91 -12 -3.69693 | opp_overlap 1101141 1101170, overlap 1101138 1101170 TTAAATAAATAAAAC GATGAGCACGTACTAT ATTTATA ATAATACATGCTCATC AATTGGAGAGCATTG TERM 1214 1101611 - 1101582 - g 95 -6.5 -5.59655 | TAAATTAATAAAAAA TGCGAGTATGAAA GGTA TTTCACGCTCACA ATTAGCGACTCAATT VF_A0980 1101283 - 1101666 + | hypothetical protein TERM 1215 1101671 - 1101701 + T 75 -9.9 -2.73364 | TAAAAAAATAGCGGT TTTAGGGGGAA GTCATATCA TTCCCCCTAAA TAGTTAAAGTACAGG VF_A0981 1101977 - 1101705 - | hypothetical protein VF_A0982 1102849 - 1101998 - | hypothetical protein VF_A0983 1103413 - 1102865 - | hypothetical protein TERM 1216 1103478 - 1103453 - H 80 -6.3 -4.72617 | overlap 1103474 1103476 TGAGAAAATAATAAA CCATATAATTT TATA AAATAATATGG AAATAATTCCAAATA TERM 1217 1104037 - 1104025 - g 71 -4.9 -4.50298 | TAAATGGAAAAACAA TTTCT ATA AGAAA AGGAACTACTTATAA TERM 1218 1104824 - 1104792 - g 86 -2.1 -6.04378 | opp_overlap 1104793, overlap 1104793 AAACTAGAAAAAAAA TCCATATTTACTCTA CCA TATATTAAATATGGT TACTGTAGAGGTAGT TERM 1219 1104881 - 1104865 - g 84 -6.7 -4.85599 | opp_overlap 1104865 1104864 CTTATGTTAGAAAAA TCTTTTT TCA AAAAAGA ATATATTCTAATAAT yfhD 1103475 - 1104932 + | transglycosylase VF_A0985 1104944 - 1106161 + | putative lipoprotein TERM 1220 1106219 - 1106190 - T 91 -13.1 -3.21595 | opp_overlap 1106185 1106196, overlap 1106196 AAGTTGTATTATGAA TAAAAAGGCACTC AATA AAGTGCCTTTTTA TTAACCTATTTTCAA TERM 1221 1106213 - 1106196 - T 88 -7.7 -5.15167 | opp_overlap 1106185 1106196, overlap 1106190 TATTATGAATAAAAA GGCACTC AATA AAGTGCC TTTTTATTAACCTAT TERM 1222 1106196 - 1106213 + T 88 -7 -5.09204 | opp_overlap 1106196 1106190, overlap 1106185 TATTATGAATAAAAA GGCACT CAATAA AGTGCC TTTTTATTAACCTAT VF_A0986 1106816 - 1106235 - | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme VF_A0987 1107456 - 1106806 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase kdgK 1108408 - 1107446 - | ketodeoxygluconokinase TERM 1223 1107751 - 1107769 + g 74 -4.5 -4.87273 | overlap 1107754 CCACCCCTAGTGCAT GCAGTCG ATCCG CGACTTC TTTTTCTGGCATATT TERM 1224 1107754 - 1107766 + g 71 -4.8 -4.53475 | overlap 1107751 CCCCTAGTGCATGCA GTCG ATCCG CGAC TTCTTTTTCTGGCAT TERM 1225 1108468 - 1108426 - R 100 -14.4 -5.57054 | AATAACCTAAAAAAA GCCGCATTGATTCAATTAGA GGG TTTGATTAAATCAATGCGGC AAAACCATATAAGGC kbaY 1109359 - 1108505 - | tagatose-bisphosphate aldolase TERM 1226 1109562 - 1109589 + r 87 -12.8 -3.05384 | opp_overlap 1109562 ATTATGCATAAAAAA GCCCAAACAGCA GCCA TGCTATTTGGGC TTAAATAAAACGAGA TERM 1227 1109589 - 1109562 - R 100 -15 -5.28778 | opp_overlap 1109562 ATTATGCATAAAAAA GCCCAAACAGCA GCCA TGCTATTTGGGC TTAAATAAAACGAGA VF_A0990 1112264 - 1109616 - | trimethylamine-N-oxide reductase VF_A0991 1113993 - 1112476 - | hypothetical protein TERM 1228 1114047 - 1114022 - R 84 -5.4 -5.46698 | TTCAAAACGAAAAAA GCCACAAAAC GCGGTG GTCATGTGGC TTAAAAAAACGTTAA ydeN 1115677 - 1114064 - | hypothetical protein TERM 1229 1115182 - 1115194 + g 70 -7.7 -3.62591 | TTTTGCCTTTAATCT TGGCA TTA TGCCA TTTACCGATTGTCGC VF_A0993 1116950 - 1115718 - | arylsulfatase regulator (Fe-S oxidoreductase) VF_A0994 1117171 - 1119579 + | hyaluronate lyase precursor TERM 1230 1119591 - 1119616 + F 93 -9.8 -4.25401 | opp_overlap 1119591 CTAAACTACCATTAA GGCTACAAGA ATTGTC TCTTGTGGCC TTTCTCTTACCTTTC TERM 1231 1119616 - 1119591 - f 70 -8.3 -3.26473 | opp_overlap 1119591 CTAAACTACCATTAA GGCTACAAGAA TTGT CTCTTGTGGCC TTTCTCTTACCTTTC VF_A0995 1119734 - 1120564 + | high-affinity iron permease TERM 1232 1120620 - 1120603 - T 100 -11.3 -5.80003 | opp_overlap 1120603 TCAATAAATAAAAAA GCCGATC ACAT GATCGGC TTTTGGTATTCAACA TERM 1233 1120603 - 1120620 + T 100 -11.3 -4.4261 | opp_overlap 1120603 TCAATAAATAAAAAA GCCGATC ACAT GATCGGC TTTTGGTATTCAACA VF_A0996 1121699 - 1120650 - | hypothetical protein TERM 1234 1120902 - 1120887 - G 74 -4.6 -4.86902 | opp_overlap 1120891, overlap 1120889 1120891 TAAACCATAACAAAA CAGAGC AGTT GCACTG CTTTCAGGTGCAGGG kduD 1122480 - 1121725 - | 2-deoxy-D-gluconate 3-dehydrogenase kduI 1123380 - 1122550 - | 5-keto-4-deoxyuronate isomerase TERM 1235 1123408 - 1123458 + r 72 -9.5 -2.66873 | gap 1, overlap 1123407 1123405 AAACATTGTTTTGTG TTATAGCTATCTAAATAATTCATT ATTA GATGT-TTATTTAGATAGCTATGA ATCTTTAATAAAAAT nagA3 1124624 - 1123482 - | N-acetylglucosamine-6-phosphate deacetylase VF_A1000 1125063 - 1124626 - | PTS system, N-acetylgalactosamine-specific IIA component TERM 1236 1125129 - 1125106 - R 75 -9.7 -2.73338 | opp_overlap 1125109, overlap 1125105 1125109 ATAATGCTTTGAAAT TAAGGGGAT GGGAAA ATCCCCTTA TACGACTTCATTTCT agaD 1126069 - 1125152 - | N-acetylgalactosamine-specific enzyme IID component of PTS agaC 1126829 - 1126059 - | PTS system, N-acetylgalactosamine-specific IIC component agaV 1127340 - 1126840 - | N-acetylgalactosamine-specific enzyme IIB component of PTS agaS 1128524 - 1127355 - | tagatose-6-phosphate ketose/aldose isomerase kbaZ 1129822 - 1128521 - | tagatose 6-phosphate aldolase 1, kbaZ subunit TERM 1237 1129825 - 1129865 + r 89 -13.6 -2.67792 | gap 1, opp_overlap 1129830, overlap 1129822 1129830 GAAAGGTGTTCATTT ACTAACTCCATA-CTGCAT CCGA ATGCAGCTATGGAGTTAGG TCGGTTACTTTTCTT TERM 1238 1129860 - 1129830 - R 89 -12.1 -3.18264 | gap 1, opp_overlap 1129825 1129822 1129830 GTGTTCATTTACTAA CTCCATA-CTGCAT CCGA ATGCAGCTATGGAG TTAGGTCGGTTACTT TERM 1239 1129830 - 1129860 + r 85 -12.1 -3.10677 | gap 1, opp_overlap 1129830, overlap 1129825 1129822 GTGTTCATTTACTAA CTCCATA-CTGCAT CCGA ATGCAGCTATGGAG TTAGGTCGGTTACTT agaR 1130646 - 1129870 - | DNA-binding transcriptional dual regulator TERM 1240 1130151 - 1130137 - G 74 -5 -4.74706 | opp_overlap 1130137 1130141 GTCAACACCCAAAAA CACTTT ATC AAAGCG ATAATTTTTTAGGCT TERM 1241 1130141 - 1130155 + g 70 -2.9 -5.05782 | opp_overlap 1130137, overlap 1130137 ACACCCAAAAACACT TTATC AAAGC GATAA TTTTTTAGGCTAGCT yidJ 1131057 - 1132613 + | sulfatase/phosphatase VF_A1008 1132693 - 1133421 + | hypothetical protein TERM 1242 1133476 - 1133500 + T 100 -17.3 -4.16371 | opp_overlap 1133476 AAGCCAATAAAAAAA CGGCACTTCTA TAA TAGAAGTGCCG TTTGATTATTTAATG TERM 1243 1133500 - 1133476 - T 100 -17.3 -5.83226 | opp_overlap 1133476 AAGCCAATAAAAAAA CGGCACTTCTA TAA TAGAAGTGCCG TTTGATTATTTAATG VF_A1010 1136201 - 1133541 - | beta-hexosaminidase ycdZ 1136705 - 1137184 + | inner membrane protein TERM 1244 1137217 - 1137245 + T 100 -9 -5.88476 | opp_overlap 1137217 ATTAGATACAAAAAA GCCTCTTACT TATGCGAGT AGTAAGAGGC TTTTTTATTTATTTT TERM 1245 1137245 - 1137217 - T 95 -9 -5.43414 | opp_overlap 1137217 ATTAGATACAAAAAA GCCTCTTACT TATGCGAGT AGTAAGAGGC TTTTTTATTTATTTT TERM 1246 1137289 - 1137316 + T 100 -18.6 -3.7104 | opp_overlap 1137289 ACTCAAATGCAAAAA CGCCGCTTGATA TAAC TATCAAGCGGCG TTCTTAAATGTGGCT TERM 1247 1137316 - 1137289 - T 100 -18.6 -4.81851 | opp_overlap 1137289 ACTCAAATGCAAAAA CGCCGCTTGATA TAAC TATCAAGCGGCG TTCTTAAATGTGGCT ydeH 1138702 - 1137803 - | two component response regulator protein VF_A1013 1138869 - 1139198 + | hypothetical protein TERM 1248 1139235 - 1139205 - T 93 -10.6 -4.0044 | AATGATTAGCATAAA TTCTCCCATACC TCTTAAC GATATGGGAGAA GAGTCGCATATGACT VF_A1014 1140849 - 1139269 - | EAL domain-containing protein rpoQ 1141780 - 1140896 - | sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit TERM 1249 1144587 - 1144573 - g 74 -4.3 -4.94902 | GAAGCAGTAGAAAAA TTCAC AGATA GTGAA GCATACAATATTATT VF_A1016 1142230 - 1144824 + | two component sensory histidine kinase TERM 1250 1145550 - 1145561 + G 70 -3 -5.11937 | ATACCCACTATTCGT TCAA GCAT TTGA TTTTTTAAGCTTATT VF_A1017 1144834 - 1146552 + | two component response regulator TERM 1251 1146578 - 1146559 - T 100 -12.2 -5.86332 | opp_overlap 1146559 CTAACTTAAAAAAAA GCCACGTA GTAC TACGTGGC TTCTAAGTTACTCAC TERM 1252 1146559 - 1146578 + T 90 -12.2 -3.43676 | opp_overlap 1146559 CTAACTTAAAAAAAA GCCACGTA GTAC TACGTGGC TTCTAAGTTACTCAC VF_A1018 1147112 - 1146609 - | putative lipoprotein TERM 1253 1147027 - 1147017 - GT 70 -3.2 -4.84363 | overlap 1147007 TGAAACTATTAAAAA CAGC GAT GCTA ACGATGTCATTGATA VF_A1019 1149189 - 1147075 - | putative cytoplasmic protein sypA 1149604 - 1149921 + | putative sulphate transporter, anti-sigma factor antagonist sypB 1149970 - 1150794 + | outer membrane protein sypC 1150799 - 1152910 + | periplasmic protein involved in polysaccharide export sypD 1152910 - 1153617 + | ATPase involved in chromosome partitioning TERM 1254 1154388 - 1154362 - g 76 -3.1 -5.25803 | overlap 1154368 AACCCGTACAAAAAA CACAATTAATA CACTC TATTACTCGTG TATTAGGCCGTTTCC sypE 1153620 - 1155137 + | two-component response regulator, sigma factor PP2C-like phosphatase TERM 1255 1155151 - 1155141 - f 82 -5.4 -5.2204 | GAGAATCAATAAAAA GCAA ACA TTGC AAAGGAGCTAACTAT sypF 1155165 - 1157465 + | two-component hybrid sensor histidine kinase TERM 1256 1158535 - 1158522 - g 78 -2.5 -5.36965 | opp_overlap 1158529, overlap 1158515 1158529 GAAGATCATAAAAAA TTTAA AGCA TTAAA ACGTAATGTTGAATT TERM 1257 1158994 - 1158978 - g 70 -2.9 -5.0538 | overlap 1158980 CTCTATCGTAAAAAA CAGGCGT GGG AAGCCTA TGAAGAATCGGAATG sypG 1157508 - 1159010 + | sigma-54 dependent transcriptional regulator sypH 1158994 - 1160010 + | glycosyl transferases group 1 sypI 1160171 - 1161445 + | glycosyl transferases group 1 TERM 1258 1161945 - 1161930 - g 74 -4 -5.02074 | GTATGGCGTAAAAAA CCTGAA ACCG TTCAAG AAGAAAATGCACAAC sypJ 1161438 - 1162601 + | glycosyl transferases group 1 sypK 1162598 - 1164040 + | oligosaccharide translocase TERM 1259 1164885 - 1164909 + G 72 -4.3 -4.81843 | opp_overlap 1164892, overlap 1164887 AAAAGTGTTATTAAT TTCAATAGCAA TCA TTGCTGGTGGA TTTCTTTTCGTTGTT sypL 1164037 - 1165422 + | polysaccharide ligase sypM 1165569 - 1166324 + | acetyltransferase TERM 1260 1166858 - 1166845 - g 74 -5.3 -4.72497 | GAGTTACTAATAAAA TTTCC TAAA GGAAA AACCCAATTATTAAC sypN 1166314 - 1167450 + | glycosyltransferase sypO 1167447 - 1168946 + | chain length regulator (capsular polysaccharide biosynthesis) TERM 1261 1169455 - 1169427 - g 87 -3.2 -5.83226 | overlap 1169431 1169447 1169450 AACTGAATAAAAAAA TAAATCATGTTC ATACA GAACACGATGCA TGGCACCTCAATGCT TERM 1262 1169451 - 1169431 - g 87 -6.2 -5.33131 | overlap 1169427 1169447 1169450 GAATAAAAAAATAAA TCATGTTC ATACA GAACACGA TGCATGGCACCTCAA sypP 1169102 - 1170190 + | glycosyltransferase sypQ 1170187 - 1171374 + | glycosyltransferase sypR 1171389 - 1172033 + | sugar transferase TERM 1263 1172651 - 1172638 - g 82 -3.9 -5.37043 | overlap 1172646 1172647 ATTCTAGACAAAAAA GAAAA TCAC TTTTC ACCTACTTATCAAAA TERM 1264 1173070 - 1173053 - g 70 -2.7 -5.16151 | overlap 1173056 CAAAGCTAACAAAAA TCACTGA TACT TCAGTTA CAGGACGTTTAGGTT VF_A1038 1172254 - 1174146 + | EAL/GGDEF domain-containing protein VF_A1039 1174219 - 1174782 + | hypothetical protein VF_A1040 1174823 - 1175050 + | glutaredoxin TERM 1265 1175058 - 1175079 + T 100 -11.7 -5.06451 | opp_overlap 1175058 ATAGTTAATTAAAAA TGGAGCTTA TTTA TAAGCTCCA TTTTTTCACATAATC TERM 1266 1175079 - 1175058 - T 100 -11.7 -4.89009 | opp_overlap 1175058 ATAGTTAATTAAAAA TGGAGCTTA TTTA TAAGCTCCA TTTTTTCACATAATC VF_A1041 1175524 - 1175153 - | protein YgiW precursor TERM 1267 1175843 - 1175815 - R 100 -11.9 -4.68124 | overlap 1175816 TGAACATAGATAAAA GGCAGGTTTTAAT ATA ATTAAAACCTGCA TAAAAACTAAAATAA TERM 1268 1175842 - 1175816 - R 100 -15.4 -3.3979 | overlap 1175815 GAACATAGATAAAAG GCAGGTTTTAAT ATA ATTAAAACCTGC ATAAAAACTAAAATA ybbP 1178331 - 1175872 - | inner membrane protein TERM 1269 1177272 - 1177262 - G 79 -5.4 -4.84539 | opp_overlap 1177263 GAACCAAATAGAAAA GGTT GCC AACC ATAGCTGGGTAACTC ybbA 1179010 - 1178333 - | ABC transporter ATP-binding protein tesA 1179169 - 1179783 + | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 TERM 1270 1179811 - 1179830 + T 83 -7.8 -4.77896 | opp_overlap 1179811 ATAAAAAAACAAAAA GCCCGCTT ATAT AAACGGGC TTTTTACGTTACTTA TERM 1271 1179830 - 1179811 - T 100 -10 -5.89659 | opp_overlap 1179811 ATAAAAAAACAAAAA GCCCGCTT ATAT AAACGGGC TTTTTACGTTACTTA VF_A1045 1180241 - 1179843 - | hypothetical protein TERM 1272 1180370 - 1180355 - g 79 -5.4 -4.93318 | gap 1 TAGAAGTCACAAAAA CGCGCCA CTT TGG-GCG TGCTGCAGAGCATTT hdfR 1180303 - 1181172 + | DNA-binding transcriptional regulator TERM 1273 1181198 - 1181213 + F 95 -9 -5.24647 | opp_overlap 1181198 TTCGATTTACGATAA GGGCTT ACAT AAGCCC TTTTATTTTGTCTAT TERM 1274 1181213 - 1181198 - f 75 -9 -3.4252 | opp_overlap 1181198 TTCGATTTACGATAA GGGCTT ACAT AAGCCC TTTTATTTTGTCTAT TERM 1275 1182399 - 1182385 - g 72 -8.6 -3.56972 | opp_overlap 1182384 1182385 1182394 ATGGCACTAAACCAA GTTACC GCT GGTAAC CGTTTTGCCTTGTTA VF_A1047 1181533 - 1182696 + | magnesium transporter MgtE TERM 1276 1182752 - 1182714 - T 78 -7.4 -4.10453 | opp_overlap 1182716, overlap 1182715 TAAACCTCTGTAAAA TCCCCTCTCTGAATTGAT ATA AGCAAATCAGAGAGGGTT CTAATCTCACTTACC TERM 1277 1182751 - 1182715 - T 83 -10.9 -3.0579 | opp_overlap 1182716, overlap 1182714 AAACCTCTGTAAAAT CCCCTCTCTGAATTGAT ATA AGCAAATCAGAGAGGGT TCTAATCTCACTTAC TERM 1278 1182716 - 1182750 + T 100 -14.4 -3.48288 | opp_overlap 1182715 1182714 AACCTCTGTAAAATC CCCTCTCTGAATTGAT ATA AGCAAATCAGAGAGGG TTCTAATCTCACTTA VF_A1048 1183688 - 1182759 - | LysR family transcriptional regulator TERM 1279 1183716 - 1183742 + H 74 -5.2 -4.6955 | opp_overlap 1183715 1183717, overlap 1183717 TAATTTTACGAATAC ACATTATTCAGA TTT TCCGAATAATGA TTTTATATATTACTC TERM 1280 1183741 - 1183717 - H 83 -10.9 -3.13639 | opp_overlap 1183716 1183717, overlap 1183715 AATTTTACGAATACA CATTATTCAGA TTT TCCGAATAATG ATTTTATATATTACT TERM 1281 1183717 - 1183741 + H 75 -8.7 -3.40645 | opp_overlap 1183717 1183715, overlap 1183716 AATTTTACGAATACA CATTATTCAGA TTT TCCGAATAATG ATTTTATATATTACT TERM 1282 1184279 - 1184260 - g 71 -6.5 -4.20354 | AAGGCAATGGCAAAA TGGTTGA TTGCAT TCAACCA CGAGCTATGACTCAA nemA 1183833 - 1184954 + | N-ethylmaleimide reductase, FMN-linked TERM 1283 1185371 - 1185394 + G 77 -9.6 -3.54653 | opp_overlap 1185368, overlap 1185393 ATGATGAATTCATAT GGTTTAACCC GTGC GGGTTACACC TTCTATACTGGAAGT VF_A1050 1184951 - 1185742 + | glycine betaine-binding protein TERM 1284 1185797 - 1185773 - T 93 -7.9 -5.42265 | opp_overlap 1185768 1185773 CTAAATCATAAAAAA CGCCTAAAG AATATCA CCTTAGGCG TTTTATTTATATATC TERM 1285 1185773 - 1185797 + T 79 -5.7 -5.07523 | opp_overlap 1185773, overlap 1185768 CTAAATCATAAAAAA CGCCTAAAG AATATCA CCTTAGGCG TTTTATTTATATATC VF_A1051 1186663 - 1185818 - | universal stress protein VF_A1052 1188161 - 1186674 - | sulfate transporter TERM 1286 1188092 - 1188064 - G 73 -2.4 -5.2015 | overlap 1188068 GCAATAATAGAAAAA GCGATTGCTTCA GGGAT TAAAGCAAGAGC AACAACGATACCCGC VF_A1053 1188622 - 1189143 + | MerR family transcriptional regulator TERM 1287 1189190 - 1189154 - T 77 -5.1 -5.10064 | opp_overlap 1189156 1189160, overlap 1189156 1189160 CTTAAGAGATAAAAA CGGAAACGCCTAAAGTT ATT AGCTTTAGGCGTTACTT CTAACAAGACACGAT TERM 1288 1189188 - 1189156 - T 84 -12.1 -2.77888 | opp_overlap 1189156 1189160, overlap 1189154 1189160 TAAGAGATAAAAACG GAAACGCCTAAAGTT ATT AGCTTTAGGCGTTAC TTCTAACAAGACACG TERM 1289 1189156 - 1189188 + T 95 -14.3 -3.28712 | opp_overlap 1189156 1189154 1189160, overlap 1189160 TAAGAGATAAAAACG GAAACGCCTAAAGTT ATT AGCTTTAGGCGTTAC TTCTAACAAGACACG TERM 1290 1189184 - 1189160 - T 93 -11.5 -4.03989 | opp_overlap 1189156 1189160, overlap 1189156 1189154 AGATAAAAACGGAAA CGCCTAAAGTT ATT AGCTTTAGGCG TTACTTCTAACAAGA TERM 1291 1189160 - 1189184 + T 95 -13.7 -3.44146 | opp_overlap 1189160 1189156 1189154, overlap 1189156 AGATAAAAACGGAAA CGCCTAAAGTT ATT AGCTTTAGGCG TTACTTCTAACAAGA yjaB 1189652 - 1189221 - | acetyltransferase VF_A1055 1190581 - 1189706 - | drug/metabolite exporter family protein TERM 1292 1190542 - 1190531 - G 76 -2.2 -5.47159 | CCTAACAAATAAAAA TGAG CCTC CCCA CAAAGCAGCTAACGT VF_A1056 1190825 - 1191214 + | putative lipoprotein TERM 1293 1191273 - 1191253 - T 87 -9.7 -4.0127 | opp_overlap 1191253 AGATTTACAACTAAA GTGGCCTTA TTA TGAGGCCAC TTTTTTATATTTCTA TERM 1294 1191253 - 1191273 + T 100 -11.9 -5.59879 | opp_overlap 1191253 AGATTTACAACTAAA GTGGCCTTA TTA TGAGGCCAC TTTTTTATATTTCTA VF_A1057 1193161 - 1191299 - | phosphatase TERM 1295 1193074 - 1193058 - G 88 -7.9 -5.09426 | TTTAACGCCAAAAAA GCGCCAG CAC CTGCCGC CGCAGTTCCCATCAA qsrP 1193404 - 1193799 + | LuxR-regulated periplasmic protein QsrP TERM 1296 1193819 - 1193851 + T 73 -4.2 -4.99568 | opp_overlap 1193827, overlap 1193821 1193827 AAAGGTTATATCTTA ATAAAAAAGCCTCT ATTGC AGAGGCTTTTTAGC TTTTATTTAATCTTA TERM 1297 1193827 - 1193843 + T 90 -8 -4.91084 | opp_overlap 1193827, overlap 1193821 1193819 TATCTTAATAAAAAA GCCTCT ATTGC AGAGGC TTTTTAGCTTTTATT TERM 1298 1193843 - 1193827 - T 95 -8.7 -5.46657 | opp_overlap 1193827 1193821 1193819 TATCTTAATAAAAAA GCCTCTA TTG CAGAGGC TTTTTAGCTTTTATT VF_A1059 1195338 - 1193854 - | hypothetical protein VF_A1060 1196661 - 1195357 - | hypothetical protein VF_A1061 1196803 - 1197717 + | LysR family transcriptional regulator TERM 1299 1197723 - 1197739 + T 75 -8 -3.78409 | opp_overlap 1197723 AATACAATAAAAAAA GCCTCT ATTAC AGAGGC TTTAAATTAACTTAA TERM 1300 1197739 - 1197723 - T 100 -8.7 -5.94214 | opp_overlap 1197723 AATACAATAAAAAAA GCCTCTA TTA CAGAGGC TTTAAATTAACTTAA VF_A1062 1199035 - 1197761 - | transporter TERM 1301 1199000 - 1199012 + g 71 -4.8 -4.52589 | overlap 1199010 ACTTATTTTTAATTT TGGC TTCAT GCCA TTTTGTGTACAAGAC VF_A1063 1199301 - 1199774 + | MarR family transcriptional regulator TERM 1302 1199833 - 1199804 - f 100 -13.8 -4.09864 | opp_overlap 1199804 1199810, overlap 1199810 ACTCACTTTCTAAAA CAAAAAGCCTCT TTTTAC AGAGGCTTTTTG TTGAATCCTAATCAA TERM 1303 1199804 - 1199833 + F 90 -13.8 -3.10715 | opp_overlap 1199804 1199810, overlap 1199810 ACTCACTTTCTAAAA CAAAAAGCCTCT TTTTAC AGAGGCTTTTTG TTGAATCCTAATCAA TERM 1304 1199810 - 1199827 + F 88 -7 -5.11063 | opp_overlap 1199804 1199810, overlap 1199804 TTTCTAAAACAAAAA GCCTCT TTTTAC AGAGGC TTTTTGTTGAATCCT TERM 1305 1199827 - 1199810 - f 93 -7 -5.45802 | opp_overlap 1199810 1199804, overlap 1199804 TTTCTAAAACAAAAA GCCTCT TTTTAC AGAGGC TTTTTGTTGAATCCT VF_A1064 1199875 - 1200885 + | transporter TERM 1306 1201012 - 1201044 + T 100 -7.9 -5.80248 | GTTAATATCACGTTT TTCCAGAGAAGTT TCCCCTT AAGTTCTCTGGAA TTTTTTTGTCTATTA VF_A1065 1202025 - 1201057 - | hypothetical protein VF_A1066 1203163 - 1202264 - | LysR family transcriptional regulator TERM 1307 1203218 - 1203202 - H 79 -3.7 -5.48514 | overlap 1203192 1203189 ATCAATAAAGAAAAA CTTTACT GGA AGTATAG AAGTTCTGATTTGTG VF_A1067 1203292 - 1203966 + | hypothetical protein TERM 1308 1204004 - 1203980 - T 81 -7.9 -4.29327 | opp_overlap 1203980 GAGAAGTAATACAAA GGCCAAATC ACTAATA GACTTGGCC TTAATTTGTATTCTT pepE 1204765 - 1204028 - | peptidase E TERM 1309 1205169 - 1205183 + r 72 -2.8 -5.38054 | opp_overlap 1205169 TTTATCAATTTTAAA GAAATC TAA GCTTTC TTTTTGTTTCTCCGC VF_A1069 1206746 - 1205151 - | methyl-accepting chemotaxis protein TERM 1310 1205362 - 1205378 + g 79 -5.1 -5.01732 | ATATCTGAGATTTCA GTACAAG CTT CTTGAAC TTTTTTCAAAGAGTT VF_A1070 1207028 - 1206786 - | hypothetical protein VF_A1071 1208637 - 1207108 - | methyl-accepting chemotaxis protein, putative aerotaxis receptor TERM 1311 1207811 - 1207830 + g 70 -5.8 -4.32905 | AGATTAGTTGTCATT TCAGTAAT AGCA GTTACTGA TTGTTTTAAATTTTT TERM 1312 1208681 - 1208661 - H 100 -9.1 -4.89729 | opp_overlap 1208660 TATAAAATTGAAAAA CACTAAACC ATT GGTTTAATG AGTATATTATAAAAT TERM 1313 1209996 - 1209978 - g 77 -5.3 -4.8622 | TTGCTGAACTAAAAA CCAATGC AATGG ACATTGG GGAAGTAACTGCCGT VF_A1072 1208933 - 1210507 + | methyl-accepting chemotaxis protein VF_A1073 1210837 - 1212438 + | methyl-accepting chemotaxis protein acfC 1212467 - 1213222 + | accessory colonization factor AcfC TERM 1314 1213242 - 1213287 + T 100 -12.1 -4.8622 | opp_overlap 1213240 1213239 1213248 1213250, overlap 1213243 ACAATAAAAAATCGT AGACTATATTGGGCTATTAAT TAAA ATTTATAGCCCAATATAGACA TTTTTACTTCCAAAA TERM 1315 1213243 - 1213286 + T 100 -15.6 -3.5125 | opp_overlap 1213240 1213239 1213248 1213250, overlap 1213242 CAATAAAAAATCGTA GACTATATTGGGCTATTAAT TAAA ATTTATAGCCCAATATAGAC ATTTTTACTTCCAAA TERM 1316 1213281 - 1213248 - T 86 -12.7 -2.66882 | opp_overlap 1213243 1213242, overlap 1213240 1213239 1213250 AAAAATCGTAGACTA TATTGGGCTATTAAT TAAA ATTTATAGCCCAATA TAGACATTTTTACTT TERM 1317 1213279 - 1213250 - T 81 -10.9 -2.86743 | opp_overlap 1213243 1213242, overlap 1213248 1213240 1213239 AAATCGTAGACTATA TTGGGCTATTAAT TAAA ATTTATAGCCCAA TATAGACATTTTTAC VF_A1075 1214767 - 1213688 - | heptosyltransferase VF_A1076 1215498 - 1214785 - | EAL domain-containing protein TERM 1318 1216229 - 1216196 - H 100 -10.5 -4.87626 | opp_overlap 1216189, overlap 1216197 CTTTAATATTAAAAA GCCACATTATATGTA GAAC CACATATAATGTGGG TGAATAACTTTATTC TERM 1319 1216228 - 1216197 - H 100 -14 -3.51853 | opp_overlap 1216189, overlap 1216196 TTTAATATTAAAAAG CCACATTATATGTA GAAC CACATATAATGTGG GTGAATAACTTTATT VF_A1077 1216449 - 1217306 + | RIO1 protein VF_A1078 1217982 - 1217338 - | acetyltransferase/hydrolase family protein TERM 1320 1217789 - 1217803 + g 81 -2.8 -5.58209 | ATGCCACCTAAACTG TGTCCT ACA ATGACA TTTTTTTCCGTTTCA ydiK 1219192 - 1218104 - | inner membrane protein TERM 1321 1219272 - 1219283 + r 82 -4.4 -5.39721 | ATAGTGTATTACTCA GCTA AAGT TAGC TTTTTTCTCTCGTAA VF_A1080 1220166 - 1219279 - | hypothetical protein TERM 1322 1220421 - 1220409 - R 76 -2.7 -5.47218 | GTTGATTTAAAAAAA CATGA AAA TCATA ATGAGTTACATATTC VF_A1081 1221212 - 1220604 - | hypothetical protein TERM 1323 1220766 - 1220747 - G 74 -4.4 -5.00136 | AAATAAAAGATAAAA TAACTTTA TTAT TAAAGTCA TCATCAACATGAATT TERM 1324 1221026 - 1221039 + g 75 -2.5 -5.20328 | TTAATTCCATTTCAC TAAAA ACAA TTTTA TTTATTTTTTTACAA TERM 1325 1222028 - 1222018 - g 82 -4 -5.51402 | opp_overlap 1222018, overlap 1222008 AGACATTTAAAAAAA GAAA ATA TTTC CTTTTCCAAACTATT VF_A1082 1221421 - 1222230 + | AraC family transcriptional regulator TERM 1326 1222260 - 1222233 - f 100 -11.4 -4.13748 | opp_overlap 1222229 CTTAAAAATATGAAA TGGCAGGGTATA ATTA TATACCCTGCTA ATAATCACTTACCAC TERM 1327 1222983 - 1222961 - g 81 -2.6 -5.5353 | overlap 1222963 TATATCAATAAAAAA TACCCCTAAG CAA CATAGAGGAA AAATTAAATTCACAG TERM 1328 1223127 - 1223117 - g 81 -5.4 -5.11033 | TATAACTTCAAAAAA CACA GAA TGTG AATATATTCAAATAA VF_A1083 1222827 - 1223417 + | hypothetical protein TERM 1329 1223881 - 1223871 - f 76 -4 -5.2696 | TTAAAATTTAAAAAA CAAT CAC ATTG AGAATAATAGTATGC TERM 1330 1224391 - 1224374 - g 78 -4.1 -5.28826 | overlap 1224379 AAACTTCAGAAAAAA TAGAAGC AGTG GCTGCTA TAGATGTAAAAGTTA TERM 1331 1224389 - 1224379 - g 73 -6.8 -4.23386 | overlap 1224374 TCAGAAAAAATAGAA GCAG TGG CTGC TATAGATGTAAAAGT TERM 1332 1225766 - 1225740 - g 90 -3.3 -5.95946 | gap 1, opp_overlap 1225740 1225743 1225748, overlap 1225743 1225744 CGAAGAACAAAAAAA TATCTTAAGTTT TTTT AAACTTAA-ATA ATATTCGTAAATTAT VF_A1084 1223893 - 1225767 + | methyl-accepting chemotaxis protein TERM 1333 1225808 - 1225789 - T 100 -12.2 -4.86902 | opp_overlap 1225784 1225783 1225781 TAAATTATAATAAAA GTGGTGAG TTAG CTCACCAC TTCAACTGTTTTATG VF_A1085 1225967 - 1225797 - | hypothetical protein VF_A1086 1226101 - 1226991 + | LysR family transcriptional regulator TERM 1334 1227005 - 1227031 + T 100 -11 -5.08011 | opp_overlap 1227010, overlap 1227010 AAAGTCCTAAAACCA AAAAACTCCTGA TTA TCAGGAGTTTTA TTTTTTACCACTTTT TERM 1335 1227010 - 1227026 + T 100 -10.9 -5.42198 | opp_overlap 1227010, overlap 1227005 CCTAAAACCAAAAAA CTCCTGA TTA TCAGGAG TTTTATTTTTTACCA TERM 1336 1227026 - 1227010 - T 100 -10.9 -5.46698 | opp_overlap 1227005 1227010 CCTAAAACCAAAAAA CTCCTGA TTA TCAGGAG TTTTATTTTTTACCA VF_A1195 1227122 - 1227036 - | hypothetical protein TERM 1337 1227715 - 1227735 + G 89 -10.5 -4.19735 | opp_overlap 1227708 AAGAACAACGCCACT GCCGATATC GGT GATATTGGC TTTGCTTTTGCACGA VF_A1087 1227451 - 1228503 + | ABC transporter substrate-binding protein VF_A1088 1228513 - 1229328 + | hypothetical protein TERM 1338 1230144 - 1230154 + G 79 -6.8 -4.63486 | opp_overlap 1230143 TCCGTTATATTAATG GCCA TTC TGGC TTTTATTACCACAGT VF_A1089 1229325 - 1230212 + | ABC transporter permease protein VF_A1090 1230199 - 1230984 + | ABC transporter permease protein afuC 1230984 - 1232003 + | CP4-6 prophage; ferric transporter subunit VF_A1092 1232006 - 1232671 + | hypothetical protein TERM 1339 1232755 - 1232725 - T 88 -7.1 -5.03961 | AACGAAACAATAAAA TTACCAATAGT TTGATTGTG ACTATTGGTAA TACTGCCTTCACCCG VF_A1093 1232960 - 1232706 - | hypothetical protein TERM 1340 1233181 - 1233148 - R 77 -8.9 -3.58269 | opp_overlap 1233148, overlap 1233151 1233158 TAATGCATTGTTAAA GTAGCGTAAATGATG CAAG CACCACTCACGCAAC TTATTTGAAATTAAA TERM 1341 1233178 - 1233151 - R 73 -9.2 -2.91695 | opp_overlap 1233148, overlap 1233148 1233158 TGCATTGTTAAAGTA GCGTAAATGATG CAAG CACCACTCACGC AACTTATTTGAAATT cspG 1233401 - 1233192 - | DNA-binding transcriptional regulator TERM 1342 1233447 - 1233435 - R 88 -7.7 -4.94222 | opp_overlap 1233435 AAGAATTCATAAAAA TCGCA TTA TGCGA TGTGCTTGAGCTTGA TERM 1343 1233714 - 1233697 - R 100 -7.7 -5.90231 | opp_overlap 1233692 1233697 ACAAACACAAAAAAA CCGCCAT AACA ATGACGG TTTTATCTTTATAAT TERM 1344 1233697 - 1233714 + r 77 -5.5 -4.85822 | opp_overlap 1233697, overlap 1233692 ACAAACACAAAAAAA CCGCCAT AACA ATGACGG TTTTATCTTTATAAT hvnA 1234653 - 1233751 - | halovibrin HvnA VF_A1096 1236789 - 1234669 - | hypothetical protein TERM 1345 1234794 - 1234766 - G 84 -12.5 -3.04203 | TCAAGCCAGAAATGA GCATCGGGATCAG AAC CTGATCCTGATAC GGTAGACGACCAGTA VF_A1097 1238701 - 1236884 - | hypothetical protein TERM 1346 1238750 - 1238767 + r 83 -7 -4.66418 | opp_overlap 1238750, overlap 1238755 TCCGAACAGATAAAA GCCTCT AATAAA AGAGGC TTTATTATTATTTTA TERM 1347 1238767 - 1238750 - R 83 -7 -4.67943 | opp_overlap 1238750 1238755 TCCGAACAGATAAAA GCCTCT AATAAA AGAGGC TTTATTATTATTTTA VF_A1098 1239994 - 1238792 - | hypothetical protein TERM 1348 1238982 - 1238966 - G 75 -9.5 -3.36492 | TTCTGAACTCCACAA CATACGA ACA TCGTATG GCCAGTGTTCAGTTT VF_A1099 1242011 - 1240134 - | putative lipoprotein ompA 1242987 - 1242013 - | outer membrane protein A TERM 1349 1242548 - 1242524 - G 70 -9.9 -2.73243 | opp_overlap 1242523, overlap 1242523 ATTGAGGTTCCAAAT CGCAAGCTCCA ATT TGGAGCAAGCG CATATTCAGCACCAA VF_A1101 1243402 - 1243121 - | hypothetical protein TERM 1350 1243362 - 1243372 + g 73 -6.8 -4.15849 | opp_overlap 1243362 TATCTCTCATAACAA CGCT CTA AGCG TTTAATTGTTCTTCT VF_A1102 1244652 - 1243849 - | phage integrase family site specific recombinase TERM 1351 1245313 - 1245294 - g 73 -5.8 -4.50993 | TTAAAGAAACACAAA TTGAATTC AAAA GAACTCAA GCCTTAGTTAGTCGC VF_A1103 1244918 - 1245928 + | multidrug resistance protein A VF_A1104 1245925 - 1247394 + | multidrug resistance protein B hvnC 1247564 - 1248442 + | halovibrin HvnC TERM 1352 1248461 - 1248484 + F 84 -6 -5.24129 | gap 1 TCATTATTAAGTTCA GGCCACG-ACG ATT TGTTCGTGGTC TTTTTTGTCAAAACA VF_A1106 1248597 - 1248812 + | hypothetical protein TERM 1353 1248846 - 1248827 - T 100 -12.2 -5.66684 | opp_overlap 1248827 GAATCCATAAAAAAA GAGTGACC GTTT GGTCACTC TTTTTTGTTTCTGCA TERM 1354 1248827 - 1248846 + T 100 -12.2 -5.72622 | opp_overlap 1248827 GAATCCATAAAAAAA GAGTGACC GTTT GGTCACTC TTTTTTGTTTCTGCA VF_A1107 1250468 - 1248864 - | mechanosensitive ion channel TERM 1355 1250686 - 1250664 - R 100 -12.8 -5.93809 | opp_overlap 1250663 1250661 1250664 CTTGTATAAAAAAAA GCGCATCCAT CAA ATGGATACGC CTCTATTTTCATGAA TERM 1356 1250664 - 1250686 + r 78 -10.6 -2.66321 | opp_overlap 1250664, overlap 1250663 1250661 CTTGTATAAAAAAAA GCGCATCCAT CAA ATGGATACGC CTCTATTTTCATGAA VF_A1108 1251226 - 1250705 - | hypothetical protein VF_A1110 1251440 - 1251339 - | hypothetical protein TERM 1357 1252000 - 1251983 - gR 71 -4.9 -4.52589 | gap 1, overlap 1251986 TCTCTTCACATAAAA CAATAGGC TAT GCCTAT-G TAAAACAAGGGGCAA TERM 1358 1251998 - 1251986 - gR 81 -7.7 -4.38141 | overlap 1251983 CTTCACATAAAACAA TAGGC TAT GCCTA TGTAAAACAAGGGGC VF_A1109 1251403 - 1252305 + | LysR family transcriptional regulator VF_A1111 1253151 - 1252312 - | hypothetical protein TERM 1359 1252418 - 1252439 + g 70 -9.5 -2.59039 | opp_overlap 1252416, overlap 1252417 GCCTCAATAGAACGC TGCAAGTCA TCAA TGGCTTGCA CTTCTGCCCCTAATT TERM 1360 1252462 - 1252492 + g 73 -6.9 -4.30844 | CCCTAATTGCGCATA TGCACATGCTC GCTGGAATA GTGCATGTGCA TTTTGATCATCCACT VF_A1112 1253830 - 1253243 - | amino acid transporter LysE VF_A1113 1253939 - 1254382 + | AsnC family transcriptional regulator VF_A1114 1255062 - 1254379 - | cobalt-zinc-cadmium resistance protein CzcD TERM 1361 1255304 - 1255283 - g 83 -6.5 -5.12707 | GCAAACTTCAAAAAA GCCGAACTA CGGT CAGTGCGGC ATTGAGCACTCTTGA VF_A1115 1255201 - 1256085 + | LysR family transcriptional regulator VF_A1116 1256168 - 1256809 + | homoserine/homoserine lactone efflux protein TERM 1362 1256857 - 1256831 - T 100 -18.2 -5.46698 | opp_overlap 1256831 TCTAAAATCAAAAAA GGGCTGAAGATA TTG TATCTTCAGCCC TTTTTTATCACTCCA TERM 1363 1256831 - 1256857 + T 100 -18.2 -5.28176 | opp_overlap 1256831 TCTAAAATCAAAAAA GGGCTGAAGATA TTG TATCTTCAGCCC TTTTTTATCACTCCA VF_A1117 1257877 - 1256903 - | hypothetical protein TERM 1364 1257481 - 1257495 + g 76 -7.2 -4.25848 | TTTGACGTGATTTAT TTGCAT TTA ATGCAA TTTTAATCGCCCCTT VF_A1118 1258584 - 1257892 - | hypothetical protein VF_A1119 1259386 - 1258955 - | hypothetical protein TERM 1365 1259431 - 1259478 + H 100 -27.6 -2.96598 | opp_overlap 1259434 1259446, overlap 1259434 GCTTCGAGTTGCATT TAATTTACATCACAACAGTTGC GCAT GCAACTGTTGTGATGTAAATTA TCTCTCAGTTAGTTA TERM 1366 1259475 - 1259434 - H 100 -24.9 -3.06183 | opp_overlap 1259431 1259434, overlap 1259446 TCGAGTTGCATTTAA TTTACATCACAACAGTTGC GCAT GCAACTGTTGTGATGTAAA TTATCTCTCAGTTAG TERM 1367 1259434 - 1259475 + H 100 -24.9 -3.61983 | opp_overlap 1259434 1259446, overlap 1259431 TCGAGTTGCATTTAA TTTACATCACAACAGTTGC GCAT GCAACTGTTGTGATGTAAA TTATCTCTCAGTTAG TERM 1368 1259463 - 1259446 - H 81 -9.9 -3.48288 | opp_overlap 1259434 1259431, overlap 1259434 TAATTTACATCACAA CAGTTGC GCAT GCAACTG TTGTGATGTAAATTA VF_A1120 1259521 - 1260159 + | hydrogenase cytochrome B-type subunit TERM 1369 1260361 - 1260348 - g 76 -6.7 -4.4267 | GCTGAAAAGTCAAAA GTGGA AAAC TCCAC AACCACTCGAACATT VF_A1121 1260165 - 1260590 + | MarR family transcriptional regulator TERM 1370 1260615 - 1260636 + F 83 -5.9 -5.03994 | opp_overlap 1260615 TTTTAAACTAATAAA TAGCCCA AATCATCA TGGGCTA TTTTTGTATCTACGC TERM 1371 1260636 - 1260615 - f 72 -5.9 -4.39696 | opp_overlap 1260615 TTTTAAACTAATAAA TAGCCCA AATCATCA TGGGCTA TTTTTGTATCTACGC TERM 1372 1260946 - 1260992 + G 81 -11.7 -2.51725 | gap 1, opp_overlap 1260955, overlap 1260945 1260948 TTTTCGAGAACCTTC GAGGACAGACGGTGA-CGATGT TTAC GCATTGATCACCGAGTGTCCTC CTCTTGATATAAACT TERM 1373 1261312 - 1261290 - g 89 -5.6 -5.48825 | CACTATTTAAAAAAA TTGATGCCCA ATA TGGAAATCAA GGGCAAGTCACTACG ectA 1260854 - 1261411 + | L-2,4-diaminobutyric acid acetyltransferase ectB 1261432 - 1262697 + | diaminobutyrate--2-oxoglutarate aminotransferase ectC 1262712 - 1263098 + | L-ectoine synthase TERM 1374 1263355 - 1263344 - g 83 -3.6 -5.55698 | TAGAATGTAAAAAAA CCAG TAAG CCGG GTGTTTACCAACTTA TERM 1375 1264357 - 1264345 - g 70 -3.4 -4.89729 | TACAAAACCGAAAAA CGTT ATCCA AACG CCTCAATCAAAGGTC VF_A1125 1263187 - 1264614 + | aspartate kinase TERM 1376 1264628 - 1264665 + F 93 -13.8 -3.2827 | opp_overlap 1264623 1264628 1264630 1264634, overlap 1264634 AGTTCATTAACTATA TACCAATCCAGATAAT GATTAG ATTATTTGGATTGGTA TTAATAATTCCCTGC TERM 1377 1264665 - 1264628 - f 83 -11.6 -2.93901 | opp_overlap 1264628 1264634, overlap 1264623 1264630 1264634 AGTTCATTAACTATA TACCAATCCAGATAAT GATTAG ATTATTTGGATTGGTA TTAATAATTCCCTGC TERM 1378 1264663 - 1264630 - f 77 -9.8 -3.02096 | opp_overlap 1264628 1264634, overlap 1264628 1264623 1264634 TTCATTAACTATATA CCAATCCAGATAAT GATTAG ATTATTTGGATTGG TATTAATAATTCCCT VF_A1126 1265068 - 1265958 + | AraC family transcription regulator VF_A1127 1265997 - 1266260 + | hypothetical protein VF_A1128 1266273 - 1266545 + | hypothetical protein VF_A1196 1266631 - 1266828 + | hypothetical protein TERM 1379 1267131 - 1267104 - T 70 -4.2 -4.69053 | gap 1, overlap 1267108 TATGATTTAATAAAA GGATCA-TCATGC AGC GCATGAGCAACCC ATTCTTTATTGAGTG VF_A1129 1278502 - 1267088 - | hypothetical protein TERM 1380 1269779 - 1269755 - G 73 -5.7 -4.58395 | opp_overlap 1269755 1269753 1269760 1269772, overlap 1269771 TTTATTTCCTAAAAA CTCATTACTTC TAA GAGGTAAAGAG TCTTTACTACTTGAG TERM 1381 1270002 - 1270014 + g 71 -4.8 -4.65895 | TCTGCTAAGCTTTGC GCAG AACCA CTGC TTTTTGCATAGCAAG TERM 1382 1270238 - 1270254 + g 76 -10.9 -2.69468 | opp_overlap 1270235 1270236, overlap 1270236 ATACTGAACTAACGG GTCCGAT AAT ATCGGAC TGCTATCTCCGCCTA TERM 1383 1272553 - 1272567 + g 70 -8.6 -3.35465 | opp_overlap 1272553 1272552 1272550 1272555 GTGACTTAAAAAGAG CATCTG CAT CAGATG TTAATCTCTGTAGAT TERM 1384 1275558 - 1275533 - G 73 -8.3 -3.66646 | overlap 1275534 AACAGGCGAGTTAAA CGACTCCACCG GGGT CGATAGAGTCA ACACCTGTCGCTGAA TERM 1385 1275557 - 1275534 - G 71 -9.6 -2.79505 | overlap 1275533 ACAGGCGAGTTAAAC GACTCCACCG GGGT CGATAGAGTC AACACCTGTCGCTGA VF_A1130 1279721 - 1278903 - | hypothetical protein VF_A1131 1280489 - 1279749 - | hypothetical protein TERM 1386 1279963 - 1279977 + g 70 -2.9 -5.08088 | opp_overlap 1279963 1279958 GGCCATATTATAAAA TAGAT AATAA ATCTA TTTTTCTTACGCATT TERM 1387 1280615 - 1280646 + r 100 -14.8 -5.08255 | opp_overlap 1280615 TAATTTTTAAGATAA TATAGCCATTATAT TTTC ATATAATGGCTATA TTTTATTTTGAAGCT TERM 1388 1280646 - 1280615 - R 100 -14.8 -3.67498 | opp_overlap 1280615 TAATTTTTAAGATAA TATAGCCATTATAT TTTC ATATAATGGCTATA TTTTATTTTGAAGCT VF_A1132 128