TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.609921 %AT, 3828942 nt, 25183 terms. Intergenic: 0.663453 %AT, H2T: 425262 nt, 3810 terms; T2T: 120434 nt, 2981 terms; H2H: 180744 nt, 2588 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|197333880|ref|NC_011184.1| Vibrio fischeri MJ11 chromosome I, complete sequence (length 2905029) VFMJ11_0001 747 - 313 - | protein MioC TERM 1 767 - 784 + r 72 -8.4 -3.45032 | opp_overlap 767 TTATCCTATAAAAAA TGGGCC TACATC GGCCCA TTATCAATCTTATTA TERM 2 784 - 767 - R 90 -8.4 -5.26316 | opp_overlap 767 TTATCCTATAAAAAA TGGGCC TACATC GGCCCA TTATCAATCTTATTA trmE 2176 - 809 - | tRNA modification GTPase TrmE TERM 3 2226 - 2252 + r 93 -9.4 -4.41047 | opp_overlap 2231, overlap 2231 TATGCTCATTGAACA AAAAAGGCGACC AAT GGCCGCCTTTTG TTTTACTTCAAGAGT TERM 4 2247 - 2231 - R 100 -11.5 -5.4833 | opp_overlap 2226 2231 TCATTGAACAAAAAA GGCGACC AAT GGCCGCC TTTTGTTTTACTTCA TERM 5 2231 - 2247 + r 100 -9.3 -5.18643 | opp_overlap 2231, overlap 2226 TCATTGAACAAAAAA GGCGACC AAT GGCCGCC TTTTGTTTTACTTCA VFMJ11_0003 3899 - 2274 - | inner membrane protein OxaA TERM 6 2633 - 2657 + g 78 -3 -5.50774 | gap 2, opp_overlap 2631 2641, overlap 2640 2641 TTTGAAGAAGAATTG GTAAACAACCAC CTA GTGG--GTTTAC TTTTTCTTTCTTGTA rnpA 4449 - 4126 - | ribonuclease P protein component rpmH 4629 - 4495 - | ribosomal protein L34 VFMJ11_0006 5552 - 4815 - | L-cystine import ATP-binding protein TcyN VFMJ11_0007 6220 - 5549 - | cystine transport system permease protein TERM 7 6325 - 6306 - R 76 -7.9 -4.04579 | opp_overlap 6281 6305 6306 GTTAGAAAGATGAAA CCCACTA GTAATA TAGTGGG CTTATTTGATGGATG VFMJ11_0008 7126 - 6374 - | cystine-binding protein TERM 8 7152 - 7166 + H 79 -3.6 -5.42259 | CCTATTATTCATTCA GTATTA GGA TGATAC TTTTTTTGCGACTGA TERM 9 7732 - 7697 - g 73 -7.4 -4.11623 | opp_overlap 7699 7708, overlap 7692 CAGTACCAAAGCAAA CCGCTGCTGATGTTGC GGCA GCTACTTCTGCACCGG CACAACTTCAAGCAC dnaA 7492 - 8832 + | chromosomal replication initiator protein DnaA TERM 10 9280 - 9293 + G 71 -5.3 -4.55287 | opp_overlap 9280 AACTTCGTAAGCTAA TTGAG AGTA CTCAA TTTTCTATGGCTAAC dnaN 8865 - 9965 + | DNA polymerase III, beta subunit VFMJ11_0011 9979 - 11058 + | DNA replication and repair protein RecF TERM 11 11603 - 11615 + G 71 -4.9 -4.56969 | AAGTGAAGAAACATT TACTA ACG TAGTA TTTGTTTATGAAATT gyrB 11076 - 13493 + | DNA gyrase, B subunit TERM 12 13632 - 13650 + F 100 -8.8 -6.02914 | opp_overlap 13632 TAGATATATGAGGAA GCACTGCT GTT GGCGGTGC TTTTTTTTATCTGAA TERM 13 14024 - 14009 - g 72 -4.6 -4.68908 | TTCAGCTAAAACAAA TGGCGG TTAC CCTCCA TACAACATTGAACAG VFMJ11_0013 13917 - 14351 + | small heat shock protein TERM 14 14398 - 14382 - T 100 -9.4 -4.6951 | opp_overlap 14382 ATTATTGAAAATAAA GGCGCT GTGAT AGCGCC TTTTTTGTGCCTGTA TERM 15 14382 - 14398 + T 100 -10.1 -5.29782 | opp_overlap 14382 ATTATTGAAAATAAA GGCGCTG TGA TAGCGCC TTTTTTGTGCCTGTA VFMJ11_0014 15802 - 14555 - | valine--pyruvate aminotransferase glyQ 16031 - 16951 + | glycyl-tRNA synthetase, alpha subunit glyS 16954 - 19020 + | glycyl-tRNA synthetase, beta subunit TERM 16 19043 - 19062 + F 100 -10 -5.72616 | opp_overlap 19043 CCTTATCAAATGAAA TACCTCGC TAAT GCGGGGTA TTTTTTTGTCTAAAT TERM 17 19062 - 19043 - f 78 -7.8 -4.10552 | opp_overlap 19043 CCTTATCAAATGAAA TACCTCGC TAAT GCGGGGTA TTTTTTTGTCTAAAT VFMJ11_0017 19166 - 20806 + | alpha-amylase VFMJ11_0018 20941 - 21192 + | NADH dehydrogenase subunit ii-related protein TERM 18 21224 - 21206 - T 100 -13.2 -4.27519 | opp_overlap 21206 AGTTTATAAGAGAAA GGCAACCA ATA TGGTTGCC TTTTTTGTACGTATT TERM 19 21206 - 21224 + T 100 -13.2 -5.30686 | opp_overlap 21206 AGTTTATAAGAGAAA GGCAACCA ATA TGGTTGCC TTTTTTGTACGTATT VFMJ11_0019 21489 - 21238 - | sulfurtransferase TusA TERM 20 21625 - 21594 - H 83 -10.4 -3.32159 | opp_overlap 21594, overlap 21589 21597 21601 GTAGATTAAATTTAA CAACAAATTAACAT TGGA ACGTTAACTTGTTG TTTTATCCATTCTAA TERM 21 21594 - 21625 + H 74 -6 -4.49337 | opp_overlap 21589 21594 21597 21601 GTAGATTAAATTTAA CAACAAATTAACAT TGGA ACGTTAACTTGTTG TTTTATCCATTCTAA VFMJ11_0020 21675 - 21866 + | hypothetical protein VFMJ11_0021 22014 - 22955 + | transcriptional regulator, LysR family TERM 22 22963 - 22980 + T 77 -9.1 -3.21962 | opp_overlap 22963 TTGCGTAATAAAAAA GGCAGCG ATTA TGCTGCC TTGAATTACTGATGT TERM 23 22980 - 22963 - T 93 -8.4 -5.4505 | opp_overlap 22963 TTGCGTAATAAAAAA GGCAGC GATTAT GCTGCC TTGAATTACTGATGT VFMJ11_0022 24034 - 23054 - | protein YhdH TERM 24 24584 - 24570 - R 82 -8.6 -4.07246 | opp_overlap 24569 24567 24570 TCAGGCTAAACGAAA GCATCA CTT TGATGC ATGTTTATACTTAAG TERM 25 24690 - 24674 - R 70 -3.7 -4.96848 | opp_overlap 24674 CTCGTGATACAAAAA CTACATT CAA AAAGTAG TCTGTTTATAGCACT TERM 26 24759 - 24728 - R 87 -6.6 -5.4433 | gap 1, opp_overlap 24728 AGATAGAAAGAAAAA GTCGCTTCAATGTTC ATA GAACAGAG-AGCGAC TTTTTTTGTTTTTAA TERM 27 24728 - 24759 + r 100 -6.6 -6.20267 | gap 1, opp_overlap 24728 AGATAGAAAGAAAAA GTCGCTTCAATGTTC ATA GAACAGAG-AGCGAC TTTTTTTGTTTTTAA fadA 25957 - 24794 - | acetyl-CoA C-acyltransferase FadA fadB 28148 - 25971 - | fatty oxidation complex, alpha subunit FadB TERM 28 26804 - 26825 + g 70 -5.9 -4.42667 | gap 1, overlap 26805 GATTGAAGAAGTGCA TGCCACAGAA ATT TTCTG-GGCG TTTTAATGATTTTGC VFMJ11_0025 28391 - 29008 + | hypothetical protein TERM 29 29163 - 29178 + G 70 -5.4 -4.4846 | GTTTATATATCGTGA TGGTGC CGGT GTACCA TTTGTTATTACCTTC TERM 30 29304 - 29325 + G 87 -5.1 -5.45802 | overlap 29305 TTTTTGGATGGTAAT CGGTAGTGC AGGA GCATTACCA TTTTTGTTTTCAGGC TERM 31 29305 - 29324 + G 77 -8.6 -3.86397 | overlap 29304 TTTTGGATGGTAATC GGTAGTGC AGGA GCATTACC ATTTTTGTTTTCAGG VFMJ11_0026 29065 - 30522 + | Trk system potassium uptake protein TrkH VFMJ11_0027 30555 - 31079 + | protoporphyrinogen oxidase TERM 32 31241 - 31225 - f 81 -10.9 -2.63631 | opp_overlap 31224 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 33 31286 - 31309 + F 81 -6 -4.84527 | GCCATATTTAGAAAA GGCTTGTATC GAAA GGTATGAGCC TTTTTGCTATCTGGG TERM 34 31412 - 31435 + F 100 -11.8 -4.84527 | opp_overlap 31412 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 35 31435 - 31412 - f 82 -9.6 -3.53722 | opp_overlap 31412 GCCATATTTAGAGAA GGCTCATATC GAAA GGTATGAGCC TTTTTGCTGTCTGGG TERM 36 31538 - 31561 + F 100 -10.4 -4.84527 | opp_overlap 31538 GCCATATTTAGAGAA GGCTTATATC GAAA GATATGAGCC TTTTTGCTATCTGGG TERM 37 31561 - 31538 - f 73 -8.2 -3.53722 | opp_overlap 31538 GCCATATTTAGAGAA GGCTTATATC GAAA GATATGAGCC TTTTTGCTATCTGGG TERM 38 31815 - 31835 + G 74 -9.1 -3.58864 | overlap 31814 GGTCAGTGGTCAGCT TGATAATGG ATT CCGTTATCA TATTTATCCTGATCG VFMJ11_0029 31708 - 34461 + | zinc protease VFMJ11_0030 34543 - 34737 + | hypothetical protein TERM 39 34762 - 34780 + F 100 -11 -5.64421 | opp_overlap 34761 34762 TGAATAGTTTGAAAG GGCATACC TAA GGTGTGCC TTTTTTATTTGCCAT VFMJ11_0031 35035 - 36414 + | chloride channel protein VFMJ11_0032 36475 - 36588 + | hypothetical protein TERM 40 36869 - 36887 + F 83 -6 -5.16681 | TTGAAAGGTACAGAC GTAGCTGA ATT TTAGCTGC TTTTATTCTTTTTAA TERM 41 37171 - 37194 + G 77 -6 -4.57073 | TAGCTGACAGTTTAG TTGGTGGTAC CAAA GAATCACCAA TTTTTGAACCAAATG thiC 37014 - 38948 + | thiamine biosynthesis protein ThiC TERM 42 38957 - 38988 + F 82 -7.4 -4.52857 | opp_overlap 38958 38961, overlap 38958 38961 TGAATAACGATGATA ATAAGGGATGTTTC ACGT GGAACATCTCTTAG TTTTGTATACGGAAT TERM 43 38958 - 38987 + F 86 -10.9 -3.31232 | opp_overlap 38958 38961, overlap 38957 38961 GAATAACGATGATAA TAAGGGATGTTTC ACGT GGAACATCTCTTA GTTTTGTATACGGAA TERM 44 38961 - 38984 + F 75 -8.2 -3.79162 | opp_overlap 38961 38958, overlap 38958 38957 TAACGATGATAATAA GGGATGTTTC ACGT GGAACATCTC TTAGTTTTGTATACG thiE_2 39019 - 39678 + | thiamine-phosphate pyrophosphorylase VFMJ11_0035 39671 - 40504 + | adenylyltransferase ThiF thiS 40497 - 40709 + | thiamine biosynthesis protein ThiS thiG 40711 - 41481 + | thiazole biosynthesis protein ThiG TERM 45 42473 - 42456 - g 71 -6.3 -4.18494 | CAGCGGCATCGAAAA CACAACC GGGT GGTTATG CAAATGATGACCAAG thiH 41492 - 42604 + | thiazole biosynthesis protein ThiH TERM 46 42631 - 42680 + T 81 -8.1 -4.14175 | gap 1, opp_overlap 42631 AAACAACATAAAAAA TGCCACGTTTGCTCTTCTATAGAG CTC TTTTATAGAATAG-GTACGTGGCA TTTCATTGTTGTATT TERM 47 42680 - 42631 - T 77 -3 -5.57729 | gap 1, opp_overlap 42631 AAACAACATAAAAAA TGCCACGTTTGCTCTTCTATAGA GCTCT TTTATAGAATAGGTA-CGTGGCA TTTCATTGTTGTATT VFMJ11_0039 44497 - 42704 - | Xaa-Pro aminopeptidase TERM 48 43935 - 43945 + g 80 -2.4 -5.63517 | AGTTGTGTTAATAGC GCTG CGT CTGC TTTTTTCTTTGAGAC VFMJ11_0040 45564 - 44599 - | virulence genes transcriptional regulator PhcA VFMJ11_0041 45733 - 46890 + | chloramphenicol resistance protein VFMJ11_0042 47012 - 47302 + | hypothetical protein TERM 49 47365 - 47347 - T 100 -10.3 -5.63645 | opp_overlap 47347 TTAAAATAGAAAAAA GCAGCGT CATAC ACGCTGC TTTTTTGTTTATTAC TERM 50 47347 - 47365 + T 100 -10.3 -5.80003 | opp_overlap 47347 TTAAAATAGAAAAAA GCAGCGT CATAC ACGCTGC TTTTTTGTTTATTAC VFMJ11_0043 48298 - 47390 - | transporter, drug/metabolite exporter family TERM 51 48759 - 48747 - g 83 -3.4 -5.63236 | overlap 48757 ATTCAAAAAGAAAAA GAGT ACTTA ACTC AACAACTCGAGTTTT VFMJ11_0044 48426 - 49946 + | DNA recombination protein VFMJ11_0045 50003 - 50767 + | ubiquinone/menaquinone biosynthesis methyltransferase UbiE VFMJ11_0046 50779 - 51402 + | SCP-2 sterol transfer family protein TERM 52 51620 - 51639 + G 74 -5 -4.7871 | opp_overlap 51620 TAAGTTCGGTCAAAT GATGTCGA CCCG TCGAGATC TTTTTCCTCCTCATT TERM 53 52128 - 52102 - g 83 -11.7 -3.12999 | gap 1, opp_overlap 52099 TCATTTTAGATTTAA GCTCTGAGCACC TTAT GGTG-TCAGAGC GCATTTACGGTATTC TERM 54 52314 - 52304 - g 73 -5.4 -4.49939 | AGATAATCCAGAAAA TCCA CAA TGGA TCGGATTAGACTGTG ubiB 51399 - 53033 + | 2-polyprenylphenol 6-hydroxylase VFMJ11_0048 53085 - 53333 + | twin arginine-targeting protein translocase TatA VFMJ11_0049 53337 - 53717 + | sec-independent translocase tatC 53720 - 54475 + | twin arginine-targeting protein translocase TatC TERM 55 54496 - 54535 + T 75 -8.8 -3.43007 | opp_overlap 54506, overlap 54498 54506 GATAAAAAATCTGAA TATTGAAAAAGCGTTGAT GGTT ATCAGCGCTTTTTTTATG TCTATTTTAAATCAT TERM 56 54498 - 54533 + T 77 -9.2 -3.2785 | opp_overlap 54506, overlap 54496 54506 TAAAAAATCTGAATA TTGAAAAAGCGTTGAT GGTT ATCAGCGCTTTTTTTA TGTCTATTTTAAATC TERM 57 54506 - 54525 + T 100 -8.6 -5.77988 | opp_overlap 54506, overlap 54498 54496 CTGAATATTGAAAAA GCGTTGAT GGTT ATCAGCGC TTTTTTTATGTCTAT TERM 58 54525 - 54506 - T 80 -6.4 -4.74706 | opp_overlap 54506 54498 54496 CTGAATATTGAAAAA GCGTTGAT GGTT ATCAGCGC TTTTTTTATGTCTAT TERM 59 54651 - 54624 - T 93 -10.6 -4.06185 | opp_overlap 54630 54640, overlap 54613 54625 TAGACAAACAGGAAA CCGCTTGTGCGA GATC TCTCACAAGCGA GTGAGATTTAGCGCT TERM 60 54650 - 54625 - T 85 -11.9 -3.02627 | opp_overlap 54630 54640, overlap 54613 54624 AGACAAACAGGAAAC CGCTTGTGCGA GATC TCTCACAAGCG AGTGAGATTTAGCGC TERM 61 54630 - 54665 + T 82 -4.6 -5.40474 | opp_overlap 54625 54624, overlap 54640 54661 54662 AACAGGAAACCGCTT GTGCGAGATCTCTCAC AAGC GAGTGAGATTTAGCGC TTTTTTTAGCGCCGT TERM 62 55230 - 55199 - T 83 -11.6 -2.67803 | opp_overlap 55201, overlap 55195 55196 CTGCGAGTAAAGTTA TAGCCCCGCTAGAT GAAA ATCTAGTGGGGCTT TTCTTGTTTAGAGCA TERM 63 55201 - 55228 + T 100 -16.4 -5.00196 | opp_overlap 55199 55195 55196 GCGAGTAAAGTTATA GCCCCGCTAGAT GAAA ATCTAGTGGGGC TTTTCTTGTTTAGAG VFMJ11_0051 56604 - 55843 - | hydrolase, TatD family hemB 56756 - 57772 + | delta-aminolevulinic acid dehydratase TERM 64 57931 - 57968 + T 100 -11.6 -4.7254 | opp_overlap 57936, overlap 57936 TTCATCTAAAAAATA AAAAAGCATGATGATT TTAGTT AATCATCATGCTTTTA TTTTTCCTGAAACCT TERM 65 57963 - 57936 - T 100 -11.5 -6.04324 | opp_overlap 57931 57936 CTAAAAAATAAAAAA GCATGATGATT TTAGTT AATCATCATGC TTTTATTTTTCCTGA TERM 66 57936 - 57963 + T 100 -11.5 -5.3104 | opp_overlap 57936, overlap 57931 CTAAAAAATAAAAAA GCATGATGATT TTAGTT AATCATCATGC TTTTATTTTTCCTGA VFMJ11_0053 59529 - 58036 - | exopolyphosphatase VFMJ11_0054 60861 - 59563 - | ATP-dependent RNA helicase RhlB TERM 67 60762 - 60780 + g 76 -7.4 -4.27316 | CCTTAGCTTGAATTG GGGTACAT TTA ATGAACCC TTTTGCATTCAAACC trxA 60974 - 61300 + | thioredoxin TERM 68 61323 - 61359 + F 100 -10.4 -4.54047 | opp_overlap 61328, overlap 61328 TGGTATTAAGTCAGA TAGAACCGCATATAAT GAAAA ATTATGTGCGGTTTTG TTTTATCTGAGCTAA TERM 69 61354 - 61328 - f 73 -8.1 -3.61983 | opp_overlap 61323 61328 TTAAGTCAGATAGAA CCGCATATAAT GAAAA ATTATGTGCGG TTTTGTTTTATCTGA TERM 70 61328 - 61354 + F 100 -10.3 -5.23292 | opp_overlap 61328, overlap 61323 TTAAGTCAGATAGAA CCGCATATAAT GAAAA ATTATGTGCGG TTTTGTTTTATCTGA TERM 71 61576 - 61563 - g 72 -4.5 -4.75174 | TACTGAACTTAAAAA CCGAC CTGT ATCGG ACCTTGTTGCTCTTG rho 61540 - 62799 + | transcription termination factor Rho TERM 72 62864 - 62846 - f 85 -8.8 -4.25754 | opp_overlap 62846, overlap 62841 TCAAAAATAATGAAA CGCTGCCA ATT TGGTAGCG TTTTTTGTTGATTAA TERM 73 62846 - 62864 + F 100 -11 -5.5604 | opp_overlap 62841 62846 TCAAAAATAATGAAA CGCTGCCA ATT TGGTAGCG TTTTTTGTTGATTAA TERM 74 63519 - 63489 - g 79 -11.2 -2.73364 | opp_overlap 63489, overlap 63491 63493 GTGTTAGCTGAATTA GATAGCCTTACGCC AGA AGCGTTAGACTATC TTGTTAAACAACTAA TERM 75 63489 - 63519 + G 73 -8.3 -3.62046 | opp_overlap 63489 63491 63493 GTGTTAGCTGAATTA GATAGCCTTACGC CAGAA GCGTTAGACTATC TTGTTAAACAACTAA VFMJ11_0057 62958 - 63953 + | hypothetical protein TERM 76 64673 - 64650 - g 77 -5.2 -4.91852 | opp_overlap 64670 CTGAGTAAAAACAAA GTGATCATGC GTTG GCTTGCTCAC CGTGGTGGTGCATTA VFMJ11_0058 64095 - 65939 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VFMJ11_0059 66118 - 66381 + | phenol hydroxylase P5 protein VFMJ11_0060 66479 - 67189 + | NAD(P)H-flavin reductase TERM 77 67240 - 67219 - T 100 -13.1 -5.20606 | opp_overlap 67219 AAATATCAATAAAAA TGCCACTCA ATAA TGAGTGGCA TTTTTTTATGGATGT TERM 78 67219 - 67240 + T 100 -13.1 -5.65177 | opp_overlap 67219 AAATATCAATAAAAA TGCCACTCA ATAA TGAGTGGCA TTTTTTTATGGATGT VFMJ11_0061 68453 - 67269 - | HemY protein TERM 79 67319 - 67332 + g 71 -5.2 -4.53636 | GAGAAAGATCTGCTG CCGC TTGTTT GCGG TTTTGCTTATCTAAT VFMJ11_0062 69643 - 68450 - | uroporphyrin-III C-methyltransferase TERM 80 68953 - 68965 + g 70 -5.5 -4.45386 | opp_overlap 68947, overlap 68954 CTGGAAGAACGGCGC TTGCC AAT GGCAG TTTATTAATTTGTTG TERM 81 69392 - 69408 + g 71 -7.3 -3.95772 | TGCTGTTTTTAATTT TTGCTCA AGT TGAGCGA TTTGGATTTGTTGTT hemD 70401 - 69640 - | uroporphyrinogen-III synthase TERM 82 69997 - 70020 + g 72 -3.2 -5.1287 | gap 1 AATCAGATCTCGTCC GCCATT-TCCT CGA AGAATAATGGC TTTTTTCCCTGTCGC hemC 71339 - 70404 - | porphobilinogen deaminase TERM 83 71831 - 71800 - g 85 -5.8 -5.30616 | opp_overlap 71799 71803, overlap 71803 TCATGCAAATAAAAA GCAGCGTGAGTGGA TGGC TCAACTTACGCTTC GTTATCCTCTATCTA TERM 84 71803 - 71828 + G 72 -8.3 -3.49182 | opp_overlap 71800 71803, overlap 71799 TGCAAATAAAAAGCA GCGTGAGTGGA TGGC TCAACTTACGC TTCGTTATCCTCTAT TERM 85 73019 - 72995 - g 85 -5.9 -5.252 | TACGTCTATAAAAAA CCATTAATT GCCAAAG AATTAATGG GAGCCAAGTTCTTAG TERM 86 73424 - 73410 - g 71 -7.2 -3.83844 | opp_overlap 73375 73420 GGCATGAAGTAAGAA CACTAA ACT TTAGTG GTGAAACCGCTATTC cyaA 71597 - 74122 + | adenylate cyclase, class I TERM 87 74153 - 74133 - f 100 -9.7 -5.18355 | opp_overlap 74132 74131 74135 TCTAAAAAGCAAAAA GAGACCCGA GAT TTGGGTCTC ACTTCATTTCAGTAT TERM 88 74678 - 74657 - g 70 -2.9 -5.10029 | ATTAATGGCAAAAAA GATGAAGGC TTAC GTCCTCACC AAATTAACTCTTTTA uvrD 74207 - 76408 + | DNA helicase II TERM 89 76438 - 76455 + T 100 -9.9 -5.48787 | opp_overlap 76438 AATAAAATAAAAAAA GAGAGCA AATA TGCTCTC TTTTTTATCTATTAT TERM 90 76455 - 76438 - T 100 -9.9 -6.17669 | opp_overlap 76438 AATAAAATAAAAAAA GAGAGCA AATA TGCTCTC TTTTTTATCTATTAT TERM 91 76524 - 76509 - T 72 -4.8 -4.7329 | opp_overlap 76509 AAAAGGACTTAAAAA TTGTAA TTCA TTACAA TTGTGACATTTAAAT rarD_2 77731 - 76826 - | RarD protein TERM 92 78367 - 78383 + G 70 -8.1 -3.65002 | GTGACTTTATGGATC GTTTAGA GTC TCTAAAC TTGTGTATGATTGCT recQ 77958 - 79793 + | ATP-dependent DNA helicase RecQ VFMJ11_0069 79797 - 80087 + | aminopeptidase N TERM 93 80135 - 80106 - T 100 -12.3 -4.14392 | opp_overlap 80111, overlap 80111 GCTTAATTTTTAAAA GAAAACGGCTGTA GATA TACAGCCGTTTTT TTTGGATTAAGCCAT TERM 94 80111 - 80130 + T 100 -12.2 -5.86332 | opp_overlap 80106 80111 ATTTTTAAAAGAAAA CGGCTGTA GATA TACAGCCG TTTTTTTTGGATTAA TERM 95 80130 - 80111 - T 100 -12.2 -5.08255 | opp_overlap 80111, overlap 80106 ATTTTTAAAAGAAAA CGGCTGTA GATA TACAGCCG TTTTTTTTGGATTAA glpT 81506 - 80142 - | glycerol-3-phosphate transporter TERM 96 80350 - 80366 + g 72 -3.5 -5.1101 | AATCCTGTTAATCCT GCCGCTG TAC CCGCCGC TTTTTTAGGTGCTAA TERM 97 81156 - 81140 - G 70 -8 -3.77671 | overlap 81138 ACAATAAGATAAACA TGGCAG TAATG CTGCCA GTTGCCCAAGGCATA TERM 98 81455 - 81467 + g 72 -9.1 -3.35934 | AAGTGCTACTGATTT CTCCC GTT GGGAG TTGTGCGATATGTGC VFMJ11_0071 81850 - 82521 + | inner membrane protein YhhQ TERM 99 82569 - 82541 - f 95 -11.9 -3.99347 | opp_overlap 82546, overlap 82546 AAATGATCCAAAGAA GAAAAGGCTAACA TTA TGTTAGCCTTTTT TATTACCTATACTAT TERM 100 82564 - 82546 - f 100 -11.8 -5.011 | opp_overlap 82546, overlap 82541 ATCCAAAGAAGAAAA GGCTAACA TTA TGTTAGCC TTTTTTATTACCTAT TERM 101 82546 - 82564 + F 100 -11.8 -5.49234 | opp_overlap 82546 82541 ATCCAAAGAAGAAAA GGCTAACA TTA TGTTAGCC TTTTTTATTACCTAT TERM 102 82808 - 82834 + F 100 -10.2 -5.97575 | gap 1 TTCTCTTTTTGCTGA GCGGCG-CTTC ATTTAA GAAGACGCCGC TTTTTTTTGTCCGTT VFMJ11_0072 83222 - 86020 + | DNA polymerase I TERM 103 86115 - 86132 + T 100 -9.1 -5.81412 | opp_overlap 86113 AAATTAAAACTATGA GCCAGCG CACG CGTTGGC TTTTTTTTACCTAAA TERM 104 86328 - 86356 + T 100 -15.4 -5.72622 | opp_overlap 86326 TTGGCTAAATTCAGC CGCCTCAGTCAA CCTTT TTGACTGGGGCG TTTTTTCTTTCTGGC TERM 105 86446 - 86460 + T 78 -2.2 -5.69379 | TTTATTACACGTTAC TGAATT GAT AATTTA TTTTTTTAATTATCT TERM 106 86658 - 86679 + T 100 -14.5 -5.27335 | TTATCTCTCCCATTT CCCCACCTT ACTT AAGGTGGGG TTTTTATTTCCCCAA ysxC 87387 - 86740 - | ribosome biogenesis GTP-binding protein YsxC TERM 107 87446 - 87461 + H 76 -4 -5.252 | CCAAGTTGGATTATT GTAGTC AGCT GATTAC TTTTTTGTGAAAATG VFMJ11_0074 87676 - 88293 + | cytochrome c4 TERM 108 88337 - 88351 + F 93 -5.7 -6.09888 | opp_overlap 88336 88337 CTAAATTTAAAGAAG CAGCT CTCGT AGCTG TTTTTTTTATTAAAA TERM 109 88712 - 88722 + G 71 -6.8 -3.97444 | CTAGACTTTGGGTGT GGTC CTG GACC TTTACTTGCTCATAT VFMJ11_0075 88448 - 89089 + | 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase TERM 110 89121 - 89107 - g 70 -2.7 -5.14965 | overlap 89108 AGCCGTATTAAAAAA GCCCG TAAGC CGGGA ATGTCGAGCCAACCA VFMJ11_0076 89089 - 89634 + | protein VV1_0896 TERM 111 89758 - 89787 + G 71 -5 -4.61231 | opp_overlap 89760, overlap 89760 AAGAACAACATAGAA AATTGGCGATAC AGAAAC GTAACGCCAATA TTTTTGAGAATGTGG TERM 112 89785 - 89760 - g 88 -8.3 -4.73633 | opp_overlap 89760 89758 GAACAACATAGAAAA TTGGCGATACA GAAA CGTAACGCCAA TATTTTTGAGAATGT TERM 113 89760 - 89785 + G 71 -7.6 -3.91908 | opp_overlap 89760, overlap 89758 GAACAACATAGAAAA TTGGCGATAC AGAAAC GTAACGCCAA TATTTTTGAGAATGT VFMJ11_0077 89637 - 90128 + | putative coproporphyrinogen III oxidase TERM 114 90160 - 90181 + F 80 -7.3 -4.46212 | opp_overlap 90162 CTACTGCATTGAAGT CATCGGCTT TATG AAGCAGATG TTTTATGATGCAGGG hemN 90237 - 91610 + | oxygen-independent coproporphyrinogen III oxidase TERM 115 91690 - 91713 + T 100 -11 -5.93252 | opp_overlap 91690 TTTGCAAATTTGAAA CCGTAGGTGT TAAT GCACCTGCGG TTTTTTGTTTTTAAG TERM 116 91713 - 91690 - T 75 -8.1 -3.71649 | opp_overlap 91690 TTTGCAAATTTGAAA CCGTAGGTG TTAATG CACCTGCGG TTTTTTGTTTTTAAG VFMJ11_0079 92576 - 92115 - | transcriptional regulator, AsnC family TERM 117 92859 - 92879 + G 70 -2.5 -5.16841 | opp_overlap 92864 92865, overlap 92860 92865 AATTACGTAAACGTG ATGAACCAA AAC TTGGTGCAA TTTTTGTTGATCTAG TERM 118 92985 - 92975 - g 76 -6.8 -4.41348 | opp_overlap 92973 92971 92975 GTTGGTTTAAACAAA GGTG CGA CACC TATTGTTCTTGATGG VFMJ11_0080 92717 - 93496 + | SAM-dependent methyltransferase VFMJ11_0081 93918 - 93493 - | universal stress protein A VFMJ11_0082 94101 - 94628 + | ferritin VFMJ11_0083 94735 - 95073 + | universal stress protein UspB VFMJ11_0084 95122 - 96306 + | hypothetical protein VFMJ11_0085 96423 - 98918 + | sensory transduction protein kinase VFMJ11_0086 99495 - 98908 - | hypothetical cytosolic protein TERM 119 98979 - 99000 + g 71 -6.5 -4.18401 | opp_overlap 98979 98974 CGTAATAACATGAAA GAGCTTGAG CATT CTCTGGCTC TTTTACCATCTCTAA TERM 120 99525 - 99538 + r 72 -8.1 -3.3761 | opp_overlap 99525, overlap 99524 TTGACTGGTTGAAAA CAGGG TTAA CCCTG ATTTTATTGGAAAGG TERM 121 99538 - 99525 - R 81 -8.1 -4.08767 | opp_overlap 99525 99524 TTGACTGGTTGAAAA CAGGG TTAA CCCTG ATTTTATTGGAAAGG VFMJ11_0087 100517 - 99507 - | hypothetical outer membrane protein TERM 122 100217 - 100204 - G 71 -3.7 -4.83615 | TAGTCGCTAGAAAAA CCGCC TTTA GGTGG GGCTTCAAAATGACC VFMJ11_0088 100674 - 101309 + | khg/kdpg aldolase VFMJ11_0090 103870 - 101333 - | sensory box/ggdef family protein TERM 123 102974 - 102984 + gF 81 -2.6 -5.58179 | TTGGCCATCAATATT TAAT GAG ATTA TTTTTTCTTGTAATG VFMJ11_0089 103827 - 103988 + | hypothetical protein TERM 124 104131 - 104146 + Tr 71 -9 -3.09322 | TTATTTAGCGCTTAG CTGCGA TATC TCGCAG TGCTTGTTTCTCTGA add 105121 - 104120 - | adenosine deaminase TERM 125 105275 - 105251 - R 100 -13 -4.60924 | opp_overlap 105251 105243 105254 CAAATCGGTTAAAAA CAACGCAATC TGAAC GATTGCGTTG TCATGTTAACTTATT TERM 126 105251 - 105275 + r 87 -13 -2.78906 | opp_overlap 105251, overlap 105243 105254 CAAATCGGTTAAAAA CAACGCAATC TGAAC GATTGCGTTG TCATGTTAACTTATT TERM 127 105254 - 105272 + r 77 -8.9 -3.53189 | opp_overlap 105251, overlap 105251 105243 ATCGGTTAAAAACAA CGCAATC TGAAC GATTGCG TTGTCATGTTAACTT VFMJ11_0092 107841 - 105286 - | sensory box/ggdef family protein TERM 128 107237 - 107250 + g 78 -3.9 -5.31275 | ACAGGGTGCATGGTT GAAAT GGTG ATTTC TTTTTTCTCATCAGC TERM 129 107801 - 107775 - G 73 -6.7 -4.30576 | gap 1, opp_overlap 107775 GCGTGATCAGCAAAA CGGCAATGAATG GAAG CATT-ACTGCCG TTCGTAAGGAAAACT ntrC 109358 - 107958 - | nitrogen regulation protein TERM 130 108657 - 108645 - G 75 -5.5 -4.67011 | opp_overlap 108645 AATTTCATCTAAAAA TAGCG TAC CGCCA TTAGCTTGCTCAAAG VFMJ11_0094 110440 - 109397 - | nitrogen regulation protein NtrB TERM 131 110006 - 110018 + g 72 -3.4 -5.01811 | opp_overlap 110006 TGCTGCTCCACGTAA TCCA CCCAA TGGA TTTTTAATTTCATGC TERM 132 110492 - 110476 - R 100 -10.9 -4.41302 | opp_overlap 110473 TAGCAAATTAATAAA TGCACCA TCA TGGTGCA TCATACCTTGCTTTT VFMJ11_0095 111068 - 110532 - | hypothetical protein TERM 133 111270 - 111250 - R 100 -16.9 -5.47159 | opp_overlap 111245, overlap 111228 TGCCAATATAAAAAA GGCTCGCCT GTG AGGCGAGCC TAAAAATTAATCAAT glnA 112727 - 111318 - | glutamine synthetase, type I TERM 134 113241 - 113220 - H 75 -8.7 -3.51232 | overlap 113216 CCGTTTTTAAACCAA GTAGTGCCA ATGG TGGCTCTAC ACGCTCTGAGTGAAT typA 113229 - 115097 + | GTP-binding protein TypA/BipA TERM 135 115177 - 115152 - f 86 -10.5 -3.55907 | opp_overlap 115152 TAATAAAATTTAGAA TCCCTTTGTAG GCAA CTACGAAGGGA TTTTTTTTATCTGTT TERM 136 115152 - 115177 + F 100 -12.7 -6.08563 | opp_overlap 115152 TAATAAAATTTAGAA TCCCTTTGTAG GCAA CTACGAAGGGA TTTTTTTTATCTGTT VFMJ11_0098 115212 - 116162 + | tRNA-processing ribonuclease BN dtd 116134 - 116568 + | D-tyrosyl-tRNA(Tyr) deacylase TERM 137 116667 - 116614 - f 78 -10.5 -2.71731 | overlap 116631 TCGAGGGGTGAATTA GGTTTCAGGAGGAGCAAGAAC TGAGTTCGGTTT GCTTTTGCTCTTCCTGAAACC TGAAGCCTGAACCCT VFMJ11_0100 116751 - 117650 + | acetyltransferase TERM 138 117731 - 117762 + T 83 -10.3 -3.14931 | opp_overlap 117731, overlap 117733 TGCAGGTTTCAGGAA GAGCAAGAGCAGA GTCTGG TTTGCTTTTGCTC TTCCTGAAACCTGAA VFMJ11_0101 118595 - 117906 - | tRNA guanosine-2'-O-methyltransferase TERM 139 118842 - 118815 - R 100 -14.2 -4.41494 | TAGCTCTAACTAAAA GGACGAAGTCCG TACT CGAACCTCGTCC CTCGCATCTAGTTCT VFMJ11_0102 120973 - 118850 - | GTP pyrophosphokinase TERM 140 120317 - 120327 + g 74 -4 -5.11613 | AATACGGCCTTCAAT TTCA GAG TGAA TTTTTTGGATCATCT TERM 141 120865 - 120877 + g 71 -6.2 -4.25256 | CACTTGAGCGAGTTT GCCC TTCAT GGGC TTCTTTTGCTACCAG TERM 142 120925 - 120907 - G 91 -13.2 -3.22894 | GATAAGATCGACGAA GAGCCTCA ATG TGAGGCTC TGGCAGGTAATCTTT rpoZ 121297 - 121025 - | DNA-directed RNA polymerase, omega subunit gmk 122029 - 121406 - | guanylate kinase psiE 122258 - 122683 + | protein PsiE TERM 143 122750 - 122712 - f 88 -13.3 -3.14132 | opp_overlap 122717, overlap 122717 TTTTGTTTGTAGCAA TAAAACGCCCCTGTAGT GATTA ACTATTGGGGCGTTTTA GTAACAAATAGATGA TERM 144 122745 - 122717 - f 93 -8.8 -4.71426 | opp_overlap 122717, overlap 122712 TTTGTAGCAATAAAA CGCCCCTGTAGT GATTA ACTATTGGGGCG TTTTAGTAACAAATA TERM 145 122717 - 122745 + F 100 -11 -4.2558 | opp_overlap 122717 122712 TTTGTAGCAATAAAA CGCCCCTGTAGT GATTA ACTATTGGGGCG TTTTAGTAACAAATA VFMJ11_0106 122880 - 123260 + | hypothetical protein TERM 146 123300 - 123321 + F 72 -2.9 -5.31275 | overlap 123301 123303 123304 ACACCACAATTATAT CTATGCGTG AATA CACGCGTGC TTTTTTGTCATGCAG VFMJ11_0107 123491 - 124423 + | transporter, drug/metabolite exporter family TERM 147 124451 - 124481 + T 89 -11.3 -3.40082 | opp_overlap 124457, overlap 124457 GTTATTGATAACCAC AAAAAAGCCCTGA TAAGT TCAGGGCTTTTTA TTAATCTATATTTAG TERM 148 124457 - 124475 + T 100 -10.3 -5.17744 | opp_overlap 124457, overlap 124451 GATAACCACAAAAAA GCCCTGA TAAGT TCAGGGC TTTTTATTAATCTAT TERM 149 124475 - 124457 - T 100 -10.3 -5.39755 | opp_overlap 124451 124457 GATAACCACAAAAAA GCCCTGA TAAGT TCAGGGC TTTTTATTAATCTAT VFMJ11_0108 125370 - 124507 - | hypothetical protein rph 125531 - 126247 + | ribonuclease PH TERM 150 126258 - 126278 + F 100 -10.5 -5.80248 | opp_overlap 126260 AATAATTGATTTTAA TAGCTCCTA ATT TAGGGGCTA TTTTTTTATGTGTTA TERM 151 126955 - 126969 + G 72 -8.6 -3.46051 | TCAATCATTTCGATT GTCAGT CTG ACTGAC TTAATCTCTTTCTTG pyrE 126412 - 127053 + | orotate phosphoribosyltransferase VFMJ11_0111 127822 - 127079 - | chromosome partitioning protein ParA TERM 152 127110 - 127132 + g 100 -9.2 -5.81032 | opp_overlap 127110 AAAATAGAAGAGTAA GTGGTTGATG TCG TATCAGCCAC TTTTTTTTGCGCTTC VFMJ11_0112 128028 - 128747 + | protein PetR VFMJ11_0113 129202 - 130506 + | osmolarity sensor protein EnvZ TERM 153 131008 - 130982 - T 100 -16 -6.04324 | opp_overlap 130982 GTAAAAAATAAAAAA GACCGCAGATAA TAA TCATCTGCGGTC TTTTTCGTTTTTACT TERM 154 130982 - 131008 + T 100 -13.8 -5.1971 | opp_overlap 130982 GTAAAAAATAAAAAA GACCGCAGATAA TAA TCATCTGCGGTC TTTTTCGTTTTTACT VFMJ11_0114 132451 - 131060 - | xanthine permease VFMJ11_0115 133775 - 133032 - | competence protein F bioH 133804 - 134577 + | putative pimeloyl-BioC--CoA transferase BioH VFMJ11_0117 134604 - 135083 + | hypothetical protein VFMJ11_0118 137533 - 135218 - | protein YhgF TERM 155 135667 - 135651 - G 72 -10.1 -2.64155 | opp_overlap 135648, overlap 135647 135648 GCTGTTTTAAACTCA GGACGAG GAT CTCGCCC CGGCTTATCTAGCTC greB 138194 - 137727 - | transcription elongation factor GreB VFMJ11_0120 139151 - 138213 - | lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) VFMJ11_0121 139766 - 139176 - | HTH-type protein SlmA coaBC 141312 - 140029 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase radC 141480 - 142154 + | DNA repair protein RadC TERM 156 142429 - 142418 - g 72 -3.6 -5.1287 | CTCACACGCAAAAAA CGCC ACCA AGCG TCGTTTTCTGCCGAA rpmB 142350 - 142586 + | ribosomal protein L28 TERM 157 142563 - 142581 + F 77 -8.8 -3.54129 | GTTCTTGCAGATATG CGTGCTCG TGG CGAGAACG TTTAAGAGGAATCTG rpmG 142601 - 142768 + | ribosomal protein L33 TERM 158 142780 - 142761 - f 71 -3 -5.05712 | gap 1, opp_overlap 142765, overlap 142765 ACAAAGAAGCAAAAA TCAAGTAAT TCG ATTACT-GA TTGCAACTTTGATAA TERM 159 142805 - 142822 + F 100 -8.4 -6.11644 | opp_overlap 142800 142805 TGATAAAATTGAAAA CCCAGC CTTGTT GCTGGG TTTTTTTTTGCGTGA TERM 160 142822 - 142805 - f 83 -8.4 -4.4595 | opp_overlap 142805, overlap 142800 TGATAAAATTGAAAA CCCAGC CTTGTT GCTGGG TTTTTTTTTGCGTGA VFMJ11_0126 143315 - 143770 + | hypothetical protein VFMJ11_0127 145950 - 143968 - | phosphoglycerol transferase TERM 161 144852 - 144862 + g 70 -3.2 -4.85599 | TGATGTATACGACAT CGTA ACC TGCG TTTTTATAAGGTAAG mutM 146038 - 146859 + | formamidopyrimidine-DNA glycosylase VFMJ11_0129 147791 - 146838 - | lipopolysaccharide protein TERM 162 147637 - 147627 - G 73 -5.4 -4.55287 | opp_overlap 147627 GTTATTTACAGAAAA TGGA ATA TCCA GTTTATTGTAATAAT TERM 163 147692 - 147703 + g 76 -2.2 -5.40072 | overlap 147691 147690 GATCAAATGAGGTTC TGCT TTGC AGCG TTTTTTTGCCAAGAG coaD 148270 - 147788 - | pantetheine-phosphate adenylyltransferase VFMJ11_0131 149060 - 148263 - | glycosyl transferase, family 2 VFMJ11_0132 149827 - 149057 - | lipopolysaccharide core biosynthesis glycosyltransferase KdtX TERM 164 149214 - 149230 + g 87 -3.5 -5.72053 | opp_overlap 149214 AGCGCATGAATTAAT GCCGTGC TTA GCCCTGC TTTTTTCTTTCCTTC VFMJ11_0133 150903 - 149848 - | ADP-heptose--lipooligosaccharide heptosyltransferase I VFMJ11_0134 151098 - 151787 + | 3-deoxy-D-manno-octulosonic acid kinase (KDO kinase) TERM 165 151791 - 151767 - T 93 -10.8 -3.97307 | opp_overlap 151767 TGGAGTGAAGAAGAA TGGGCTAGCT TAGAG AGCTAACCCA TATGTAAATTAAAGC TERM 166 151767 - 151791 + T 73 -9.3 -2.94912 | opp_overlap 151767 TGGAGTGAAGAAGAA TGGGCTAGCTT AGA GAGCTAACCCA TATGTAAATTAAAGC VFMJ11_0135 153075 - 151822 - | 3-deoxy-D-manno-octulosonic-acid transferase TERM 167 152990 - 153003 + g 80 -2.3 -5.55769 | opp_overlap 152990 152985 CATCGACAACCAAAA GCAGG CTTT CCTTC TTTTTTCTTATAAAG VFMJ11_0136 154396 - 153059 - | O-antigen polymerase, putative VFMJ11_0137 154540 - 154920 + | capsular polysaccharide biosynthesis protein TERM 168 155157 - 155173 + G 77 -8.7 -3.89336 | AATATATCTCTTGGT GCGGCAA TTG TTGCTGC TTTAAATTTGATTGA VFMJ11_0138 154911 - 156488 + | capsular polysaccharide biosynthesis protein VFMJ11_0139 156494 - 157228 + | capsular polysaccharide biosynthesis protein VFMJ11_0140 157197 - 158159 + | WavE lipopolysaccharide synthesis TERM 169 159323 - 159337 + G 72 -4.4 -4.69053 | overlap 159332 AGCTAAGCTAAGATT TATTTA TCT TAAATA TTTTATTAACTGATA VFMJ11_0141 158196 - 159350 + | putative sugar transferase rfaF 160368 - 159343 - | lipopolysaccharide heptosyltransferase II VFMJ11_0143 160823 - 160368 - | glycosyl transferase, family 25 VFMJ11_0144 161086 - 160841 - | glycosyl transferase, family 25 rfaD 162190 - 161249 - | ADP-glyceromanno-heptose 6-epimerase TERM 170 162053 - 162076 + g 74 -3.8 -5.10077 | opp_overlap 162058, overlap 162054 CATGTAATCAGTGAT ATCAAGATCC ACTA GGTTCTTGAA TTTTTTACCATCTTT VFMJ11_0146 162570 - 164018 + | cleavage and polyadenylation VFMJ11_0147 164194 - 164427 + | S23 ribosomal protein VFMJ11_0148 164662 - 165306 + | transcriptional regulator, TetR family VFMJ11_0149 167779 - 165521 - | hypothetical protein VFMJ11_0150 168544 - 167783 - | hypothetical protein TERM 171 168118 - 168106 - G 86 -7.7 -4.83615 | opp_overlap 168105 GAGGGTGCACAAAAA GCTGA TAA TCAGC ATTAAGTATAGGATT VFMJ11_0151 169261 - 168587 - | WbfD protein TERM 172 169366 - 169321 - R 90 -8.3 -4.93968 | gap 1, opp_overlap 169338 AGGCATAAGTAAAAA GGGACGAAAG-TGAGAGCCTAG AAT CTAGTTCCTCATCCCCCGTCCC CTGTATCTGAAACTA VFMJ11_0152 169636 - 169385 - | hypothetical protein TERM 173 169499 - 169453 - G 80 -10.9 -3.42459 | gap 1, opp_overlap 169468, overlap 169447 169455 169458 CAGCTACAACAGCAA CAGCAGCAGCAACACCTACAGC GATA GCTGTAGTTGTAGCCGC-GCCA GCAGCAGCAGCAGAA TERM 174 169497 - 169455 - G 95 -13.5 -3.27771 | gap 1, opp_overlap 169468, overlap 169453 169447 169458 GCTACAACAGCAACA GCAGCAGCAACACCTACAGC GATA GCTGTAGTTGTAGCCGC-GC CAGCAGCAGCAGCAG TERM 175 169495 - 169458 - G 95 -14.9 -2.81181 | opp_overlap 169468, overlap 169455 169453 169447 ACAACAGCAACAGCA GCAGCAACACCTACAGC GATA GCTGTAGTTGTAGCCGC GCCAGCAGCAGCAGC TERM 176 169468 - 169485 + g 75 -9.9 -3.28712 | opp_overlap 169458 169455 169453 169447 CAGCAGCAGCAACAC CTACAGC GATA GCTGTAG TTGTAGCCGCGCCAG TERM 177 170559 - 170539 - g 71 -6.2 -4.28432 | gap 1 AAGTGGAAGGCAAAA CCGTTCGTG AAAT CA-GAACGG AAATTGCTCAAAAAT VFMJ11_0153 170115 - 171260 + | putative polysaccharide export protein GfcE VFMJ11_0154 171422 - 171700 + | S23 ribosomal TERM 178 171825 - 171788 - f 95 -12.8 -3.61371 | opp_overlap 171783 171782 AAACGCTAGCTTAAA GGGACGAGTATAAGCA TTTTTT TGCTCTTACTCGCCCC TTAAACTTAGTCCCT TERM 179 172155 - 172169 + G 77 -10 -3.28712 | TTTAGTTGTCTGTGT CGGCAA TAT TTGCCG TTCTCCAACAGGCGA VFMJ11_0155 172126 - 172566 + | Low molecular weight protein-tyrosine-phosphatase etp VFMJ11_0156 172774 - 174936 + | tyrosine-protein kinase wzc TERM 180 175260 - 175239 - g 100 -13.1 -4.0162 | overlap 175256 TTTTCAGAGCACAAA CCAGATGCA GTAA TGCATCTGG CGGCAGAGTCTCATG TERM 181 175675 - 175653 - g 89 -12.1 -3.63627 | opp_overlap 175646 GCCTTAGATGGTAAA CCATTACCG GTTTA CGGTAATGG CATGCAAATACGTGA TERM 182 175768 - 175744 - g 72 -10.1 -2.71684 | opp_overlap 175745, overlap 175743 AAGTAGTGACAGAAG GTGTTGTAGGT GAA ACCTACAACAT TGGTGGACACAACGA TERM 183 175745 - 175767 + G 93 -13.6 -3.14132 | opp_overlap 175744 175743 AGTAGTGACAGAAGG TGTTGTAGGT GAA ACCTACAACA TTGGTGGACACAACG rfbB 175020 - 176114 + | dTDP-glucose 4,6-dehydratase rfbA 176114 - 177007 + | glucose-1-phosphate thymidylyltransferase TERM 184 177095 - 177076 - g 79 -10.8 -3.17688 | opp_overlap 177076 177080, overlap 177080 CAATTAGCCGATGAA GAAAGCAC AATC GTGCTTTC TTTGGACCGAGACCA TERM 185 177076 - 177095 + G 82 -10.8 -3.53012 | opp_overlap 177076 177080, overlap 177080 CAATTAGCCGATGAA GAAAGCAC AATC GTGCTTTC TTTGGACCGAGACCA TERM 186 177080 - 177091 + G 70 -5.8 -4.41348 | opp_overlap 177080 177076, overlap 177076 TAGCCGATGAAGAAA GCAC AATC GTGC TTTCTTTGGACCGAG rfbD 177007 - 177888 + | dTDP-4-dehydrorhamnose reductase TERM 187 178408 - 178374 - g 71 -5.1 -4.56775 | AGTGGCCGTTAAAAA TGCTTCCTTCTCTGT CAAAC AAAGATAAGAAAGCA AAAATGTTTAATGAC rfbC 177893 - 178462 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 188 179690 - 179672 - g 73 -5.4 -4.63928 | ATATGACTTTAAAAA TTCATTAA ATA TCAATGAA AATAAGTAATTTATT VFMJ11_0161 178452 - 179699 + | VI polysaccharide biosynthesis protein VipA/tviB TERM 189 179737 - 179714 - g 70 -8.2 -3.72073 | opp_overlap 179714 179725, overlap 179710 179725 ATTTATTAAAAGTAA GTGCTATAGC ATAT GTTATAGCAC TTTTAACATATTTAA TERM 190 179714 - 179737 + G 89 -10.4 -4.21827 | opp_overlap 179714 179710 179725, overlap 179725 ATTTATTAAAAGTAA GTGCTATAGC ATAT GTTATAGCAC TTTTAACATATTTAA VFMJ11_0162 179686 - 181047 + | hypothetical protein VFMJ11_0163 181232 - 181525 + | galactoside O-acetyltransferase VFMJ11_0164 181518 - 182702 + | hypothetical protein TERM 191 183743 - 183733 - g 74 -4 -5.08601 | CTATCTTAACAAAAA TTCA AGC TGAA AAATTATATAAATAT VFMJ11_0165 182703 - 183848 + | LPS biosynthesis protein, putative TERM 192 183882 - 183902 + GF 100 -4.7 -6.17184 | overlap 183884 GTTCTTTTTAATTTT AGCCCTTTT TTA AAAAGGGTG TTTTTTTTTGATAGT TERM 193 183884 - 183900 + GF 100 -9.5 -4.72643 | overlap 183882 TCTTTTTAATTTTAG CCCTTTT TTA AAAAGGG TGTTTTTTTTTGATA VFMJ11_0166 183852 - 184910 + | hypothetical protein VFMJ11_0167 184885 - 185949 + | glycosyl transferase, group 1 family VFMJ11_0168 185942 - 186676 + | putative glycosyltransferase VFMJ11_0169 187080 - 186955 - | hypothetical protein TERM 194 187087 - 187139 + H 93 -12.5 -3.34629 | opp_overlap 187089 187090, overlap 187089 187090 AAATTGCATACTTTA AACTTATCCAACATTAATTATTCAT TTT ATTAATAATTAATGTTGGATAACTA TTGATAATTTGCTCT TERM 195 187089 - 187137 + H 100 -15.1 -3.23326 | opp_overlap 187089 187090, overlap 187087 187090 ATTGCATACTTTAAA CTTATCCAACATTAATTATTCAT TTT ATTAATAATTAATGTTGGATAAC TATTGATAATTTGCT TERM 196 187137 - 187089 - H 100 -15.1 -3.63805 | opp_overlap 187089 187087 187090, overlap 187090 ATTGCATACTTTAAA CTTATCCAACATTAATTATTCAT TTT ATTAATAATTAATGTTGGATAAC TATTGATAATTTGCT TERM 197 187136 - 187090 - H 100 -18.6 -2.77962 | opp_overlap 187089 187087 187090, overlap 187089 TTGCATACTTTAAAC TTATCCAACATTAATTATTCAT TTT ATTAATAATTAATGTTGGATAA CTATTGATAATTTGC TERM 198 187090 - 187136 + H 100 -18.6 -2.53273 | opp_overlap 187090 187089, overlap 187089 187087 TTGCATACTTTAAAC TTATCCAACATTAATTATTCAT TTT ATTAATAATTAATGTTGGATAA CTATTGATAATTTGC TERM 199 187281 - 187263 - H 73 -8.8 -3.29972 | opp_overlap 187263, overlap 187261 187259 ATGCGAGCAAATAGA CCACGTAG CAA CTGCGTGG TTTTATGCAATACCC TERM 200 187263 - 187281 + H 100 -11 -4.4009 | opp_overlap 187263 187261 187259 ATGCGAGCAAATAGA CCACGTAG CAA CTGCGTGG TTTTATGCAATACCC TERM 201 187953 - 187973 + G 74 -4.7 -4.88736 | TTAACCTCGGTTTTC CTTTGGGGC GTC GCTTTAAAG TTTTTATGGGTGATG wecA 187400 - 188437 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 202 188508 - 188472 - f 91 -12.5 -3.22135 | opp_overlap 188477, overlap 188477 TAGATAATTAATACA CAAAAGCGGATATAACT TAA AGTTGTATCCGCTTTTT TTGTTTTATACTCTC TERM 203 188503 - 188477 - f 100 -12.4 -4.70453 | opp_overlap 188477, overlap 188472 AATTAATACACAAAA GCGGATATAACT TAA AGTTGTATCCGC TTTTTTTGTTTTATA TERM 204 188477 - 188503 + F 100 -14.6 -6.14618 | opp_overlap 188472 188477 AATTAATACACAAAA GCGGATATAACT TAA AGTTGTATCCGC TTTTTTTGTTTTATA pseB 188900 - 189913 + | UDP-N-acetylglucosamine 4,6-dehydratase pseC 189929 - 191092 + | UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase pseF 191092 - 191784 + | pseudaminic acid CMP-transferase TERM 205 192505 - 192495 - g 75 -2.6 -5.24129 | TTTTGTCATAAAAAA TTAA ATA TTAA ACAAATTGATTTTGT VFMJ11_0174 191784 - 193286 + | FlmD pseI 193294 - 194355 + | pseudaminic acid synthase TERM 206 195062 - 195046 - g 91 -2.4 -6.09196 | TTGAAAAGAAAAAAA TAAATA TTTTT TATTTA GGCCCTGCTTGGGAT VFMJ11_0176 194352 - 195491 + | LPS biosynthesis protein WbpG VFMJ11_0177 195481 - 196101 + | imidazole glycerol phosphate synthase subunit hish 2 TERM 207 196244 - 196230 - g 72 -8.6 -3.48696 | opp_overlap 196229 196230 CTAGAAGAATACCAA TGCGAT GAA ATCGCA ATTATTCGCCCTGTT TERM 208 196470 - 196458 - g 71 -4.8 -4.55128 | overlap 196453 ATTGGTAAAGCAAAA GACC TTTTT GGTC ACCAAGCAATTCAAT VFMJ11_0178 196185 - 196829 + | putative imidazole glycerol phosphate synthase subunit hisf2 VFMJ11_0179 196810 - 197988 + | putitive LPS biosynthesis protein VFMJ11_0180 198023 - 199381 + | hypothetical protein TERM 209 199653 - 199664 + G 85 -3 -5.85737 | GTAGAATATATTCTA TTGT TATA ACAA TTTTTTTCTTAATAT VFMJ11_0181 199466 - 200608 + | putative lipooligosaccharide flippase VFMJ11_0182 200793 - 201341 + | serine acetyltransferase VFMJ11_0183 201410 - 202507 + | glycosyltransferase, putative VFMJ11_0184 202706 - 203710 + | UDP-glucuronate 5'-epimerase VFMJ11_0185 203950 - 205038 + | glycosyltransferase TERM 210 205250 - 205264 + G 88 -2.9 -6.04378 | TGGAATTGACTGTTT GAAAA GAGAG TTTTC TTTTTTTTATGATTT VFMJ11_0186 205068 - 206162 + | WbwZ TERM 211 206172 - 206160 - f 71 -3.5 -5.03994 | opp_overlap 206160 CTTTATATAGAAAAA TAAAA TGA TTTTA TTGACTGGGGCTACA VFMJ11_0187 206164 - 207069 + | putative epimerase/dehydratase WbiG TERM 212 207372 - 207388 + G 77 -6.5 -4.49556 | overlap 207373 GGGGAAATGAGTTTA GTTGGGC CCC GCCCAAA TTTATTTAATCAAGA TERM 213 207373 - 207387 + G 77 -10 -3.29252 | overlap 207372 GGGAAATGAGTTTAG TTGGGC CCC GCCCAA ATTTATTTAATCAAG VFMJ11_0188 207066 - 207614 + | undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase VFMJ11_0189 207629 - 209536 + | UDP-D-quinovosamine 4-dehydrogenase TERM 214 209867 - 209839 - g 71 -3.9 -5.00339 | overlap 209832 209829 ATTAATAACCAAAAA TCACCAATCTC AGATGTG GAGATTGAAGA TTTTCTGGCTAACAA VFMJ11_0190 209713 - 210879 + | udp-glucose 6-dehydrogenase VFMJ11_0191 211301 - 212254 + | acetyltransferase galE_2 212400 - 213407 + | UDP-glucose 4-epimerase TERM 215 213526 - 213550 + T 100 -14.3 -5.68438 | opp_overlap 213526 CCTAAGATCAAAAAA GCCCACAGGCT ACA AACCTGTGGGC TTTTTTATTTCATCG TERM 216 213550 - 213526 - T 100 -16.5 -5.27779 | opp_overlap 213526 CCTAAGATCAAAAAA GCCCACAGGCT ACA AACCTGTGGGC TTTTTTATTTCATCG gpmI 215157 - 213625 - | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase VFMJ11_0194 217021 - 215657 - | Na+-driven multidrug efflux pump groS 217308 - 217598 + | chaperonin GroS groL 217676 - 219322 + | chaperonin GroL TERM 217 219370 - 219389 + T 100 -10 -5.76633 | opp_overlap 219369 TATGTGTTTGAAGAG CCGAGGCA GAGA TGTCTCGG TTTTTTTATGTGTGG TERM 218 219503 - 219448 - T 83 -10.4 -3.14931 | overlap 219450 TTCAGGTTTCAGGAA GAGCCGGTTTTAGAGATGATCGCTGT GATT ACAGCGACCACCTCTGAATCCTGCAA GGGAGATTGCGACCG TERM 219 219501 - 219450 - T 100 -17.4 -3.1372 | overlap 219448 CAGGTTTCAGGAAGA GCCGGTTTTAGAGATGATCGCTGT GATT ACAGCGACCACCTCTGAATCCTGC AAGGGAGATTGCGAC TERM 220 219572 - 219549 - T 100 -7.4 -6.34616 | opp_overlap 219549 TTAAAACAAAAAAAA CCGCAGATGC TTTC ACATCCACGG TTTCAAATTATTCAC tpiA 220413 - 219643 - | triose-phosphate isomerase hpcD 220682 - 221026 + | 5-carboxymethyl-2-hydroxymuconate delta isomerase VFMJ11_0199 221394 - 221041 - | hypothetical protein TERM 221 221748 - 221725 - R 100 -7.4 -5.79595 | opp_overlap 221725 TCTTAAAATAAAAAA CCGCAGATGC TTTC ACATCCACGG TTTCAAATTTATCGC glpX 222828 - 221821 - | fructose-1,6-bisphosphatase, class II TERM 222 222086 - 222097 + g 79 -5.8 -4.87592 | opp_overlap 222068 TTAAGCTCGGCTTCA CCGT GGAT ACGG TTTTCTTCTGTATCG TERM 223 222909 - 222889 - H 72 -2.6 -5.22006 | TTAGCATAACAAAAA GGGAAA CGTTTGCTT TTTCCC GCGAGAATGAAATTT VFMJ11_0201 223096 - 223437 + | transcriptional regulator TERM 224 223513 - 223536 + T 100 -9.6 -5.81412 | opp_overlap 223513 TGAATTATTTTGAAA CCGTAGGTGT GGAA GCATCTACGG TTTTTTTTAGCTAGA rraA 224232 - 223732 - | regulator of ribonuclease activity A menA 225265 - 224357 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 225 225279 - 225306 + r 74 -5.8 -4.56597 | gap 1, opp_overlap 225279 225286 ATAGCATCGCAAAAA TAGTGAATAG-AG TCT CTATTATTCACTA TTTTTGGAAGAACCC VFMJ11_0204 226217 - 225348 - | phosphoribulokinase 1 VFMJ11_0205 226562 - 226320 - | hypothetical protein VFMJ11_0206 227576 - 226608 - | hydrolase, alpha/beta fold family TERM 226 227558 - 227548 - G 75 -8.2 -4.04206 | TGAGCGTTAGATAAA CCGG TAG CCGG TGTAAAGTTATCCAT VFMJ11_0207 228088 - 227582 - | hypothetical protein TERM 227 227672 - 227685 + g 72 -3.1 -5.1356 | CGTTAATAAACTTAT CTGAT TATT ATCGG TTTTTATTACTAAAG TERM 228 228055 - 228018 - G 79 -8.5 -4.1021 | opp_overlap 228017, overlap 228026 TGGGATAATGAGAAA CACCAAAAGGCTTCT TGGGTAAT AGAAGCCAATTGGTG CTCATTCAAAGGAAT TERM 229 228047 - 228026 - G 73 -5.9 -4.53036 | opp_overlap 228017, overlap 228018 TGAGAAACACCAAAA GGCTTCT TGGGTAAT AGAAGCC AATTGGTGCTCATTC VFMJ11_0208 230003 - 228072 - | ABC transporter ATP-binding protein TERM 230 228246 - 228264 + g 77 -10.4 -3.42621 | CTCTTCTTCTGCTTG GCTTAATG CTT CATTAAGC TTATCCATTCGAGTT TERM 231 229127 - 229139 + g 74 -4.8 -4.80396 | ATGGGTTATCTAACT GTGC CGGTA GCAC TTTTTCCATCTTTTC TERM 232 229227 - 229239 + g 76 -3.4 -5.23765 | GTCAATGTATGACTG CATG TGCGC CATG TTTTTCTGTTGTTTC TERM 233 229260 - 229280 + g 77 -6.1 -4.58283 | CTGTTGTTTCTGGAA CTGAGCTTG TTG CAGGATCAG TTTTTCAGAACGTTG VFMJ11_0209 230219 - 230761 + | glutathione-regulated potassium-efflux system ancillary protein TERM 234 231023 - 231013 - g 73 -6.8 -4.28049 | opp_overlap 231014 TGGAAAATGCGAAAA CCGA TAA TCGG GTTGGGAGGAAGCCA TERM 235 232204 - 232214 + G 76 -6.8 -4.39386 | GAAGTCGTGGCGTTG TGCC AAA GGCA TTTTCCTCATTTAAA VFMJ11_0210 230761 - 232551 + | glutathione-regulated potassium-efflux system protein KefB VFMJ11_0211 232587 - 232781 + | hypothetical protein VFMJ11_0212 232838 - 233425 + | fkbp-type peptidyl-prolyl cis-trans isomerase slyd TERM 236 233505 - 233528 + T 100 -9.6 -5.93252 | opp_overlap 233505 TAGAAATTAAAAAAA CCGTAGGTGC TAAT GCATTTACGG TTTTTTGTTTTTAGG TERM 237 233528 - 233505 - T 86 -5.2 -5.75822 | opp_overlap 233505 TAGAAATTAAAAAAA CCGTAGGTGC TAAT GCATTTACGG TTTTTTGTTTTTAGG VFMJ11_0213 233806 - 233582 - | hypothetical protein VFMJ11_0214 234819 - 233806 - | vegetatible incompatibility protein HET-E-1 TERM 238 235024 - 235008 - H 88 -7.3 -4.91987 | opp_overlap 235007 AATTGAATAAGAAAA TTGAGGC AGG ACCTCAA ATAATCTGGAGTTTT VFMJ11_0215 235043 - 235837 + | fkbp-type peptidyl-prolyl cis-trans isomerase fkpa TERM 239 235888 - 235905 + F 100 -10.5 -5.83211 | opp_overlap 235887 AGATCACTGAATTAG CCCCGGC ACTT GCTGGGG TTTTTTATTTTCATG TERM 240 236192 - 236173 - g 70 -5.8 -4.329 | GAAGATATCAATAAA TCAGCAAT TCGA ATTGCTAA TGGCGAGAATACAGG VFMJ11_0216 236008 - 236712 + | MukF protein TERM 241 236834 - 236865 + G 76 -7.4 -4.21908 | gap 1 AAAAGTATTCTTTTA TCAG-GAAGGCGTGT TAA ATGCGTCTTCTCTGA TTTTACCTGCTAATG tusD 236709 - 237101 + | sulfur relay protein TusD/DsrE tusC 237136 - 237492 + | sulfur relay protein TusC/DsrF dsrH 237496 - 237783 + | sulfur relay protein TusB/DsrH rpsL 237947 - 238321 + | ribosomal protein S12 rpsG 238416 - 238886 + | ribosomal protein S7 TERM 242 238891 - 238920 + F 100 -12.3 -4.6856 | gap 1, opp_overlap 238866 238894, overlap 238894 ACCGCTGGTAATACC G-AAGGTGCAGCAG TCC TTGCTGCACCTTAC TTTTTCCCCTATTTA TERM 243 238894 - 238916 + F 100 -14.2 -3.81926 | opp_overlap 238894, overlap 238891 GCTGGTAATACCGAA GGTGCAGCAG TCC TTGCTGCACC TTACTTTTTCCCCTA TERM 244 238916 - 238894 - f 93 -13.5 -3.1855 | opp_overlap 238894 238891 GCTGGTAATACCGAA GGTGCAGCA GTCCT TGCTGCACC TTACTTTTTCCCCTA TERM 245 240582 - 240602 + G 83 -6.1 -5.06414 | opp_overlap 240587, overlap 240587 240598 TAAAAATCGAACCAT CAGAACCAG ATG CTGGTTTCG TTTTTGTTGACGAAA TERM 246 240587 - 240597 + G 76 -6.8 -4.43037 | opp_overlap 240587, overlap 240582 ATCGAACCATCAGAA CCAG ATG CTGG TTTCGTTTTTGTTGA fusA_2 239018 - 241114 + | translation elongation factor G tuf_2 241223 - 242407 + | translation elongation factor Tu TERM 247 242439 - 242468 + F 93 -13.1 -3.44146 | opp_overlap 242446, overlap 242446 GATATACCGCATGAC TAAAAAAGGAAGC TTCG GCTTCCTTTTTTG TTGCTTGTAAGAAAA TERM 248 242446 - 242461 + F 95 -9 -5.57396 | opp_overlap 242446, overlap 242439 CGCATGACTAAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTGCTTGT TERM 249 242461 - 242446 - f 95 -9 -5.1861 | opp_overlap 242446 242439 CGCATGACTAAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTGCTTGT TERM 250 242924 - 242905 - g 72 -10 -2.61322 | opp_overlap 242905 242904, overlap 242904 242902 242909 AGATCGTTGAAACAG CTAAGCGC ACTG GCGCTCAG GTTCGTGGTCCTATT rpsJ 242820 - 243131 + | ribosomal protein S10 rplC 243144 - 243773 + | 50S ribosomal protein L3 TERM 251 244096 - 244109 + G 71 -6.7 -4.11304 | overlap 244087 AAAAATGTACCGTGG TGCTC TTAA GAGCA TTCTTTCTGAGTTAG rplD 243791 - 244393 + | ribosomal protein, L4/L1 family rplW 244390 - 244692 + | ribosomal protein L23 TERM 252 244968 - 244986 + G 73 -10.4 -2.79273 | opp_overlap 244954 244966 244965, overlap 244967 244970 ATACGATCCAAACCG TAGTGCAA ACA TTGCACTA GTTCTGTTCGCAGAC rplB 244708 - 245532 + | ribosomal protein L2 rpsS 245552 - 245830 + | ribosomal protein S19 rplV 245841 - 246173 + | ribosomal protein L22 TERM 253 246466 - 246451 - g 83 -9 -4.08939 | overlap 246441 GAAGACGTAGAGAAA CTACGC GCAG GCGTAG CAAAAATCGCAGGTG rpsC 246193 - 246891 + | ribosomal protein S3 rplP 246903 - 247313 + | ribosomal protein L16 rpmC 247313 - 247504 + | ribosomal protein L29 rpsQ 247525 - 247758 + | 30S ribosomal protein S17 TERM 254 247781 - 247813 + F 100 -11.4 -5.10497 | ATTCTATAGCGACTT TAAGCGGCTCCGAA TTTTT TTTGGGGCCGTTTA TTTTTTGACTACCTT TERM 255 247856 - 247840 - f 77 -5.1 -5.08824 | opp_overlap 247840 CCTTTATTTAAAAAA TGGTGAT ACA ATCCCCA TCCCTTTTAAAGAGG rplN 247923 - 248294 + | ribosomal protein L14 rplX 248308 - 248622 + | ribosomal protein L24 VFMJ11_0237 248637 - 249176 + | 50S ribosomal protein L5 VFMJ11_0238 249194 - 249499 + | 30S ribosomal protein S14 rpsH 249529 - 249921 + | ribosomal protein S8 VFMJ11_0240 249934 - 250467 + | 50S ribosomal protein L6 rplR 250477 - 250830 + | ribosomal protein L18 rpsE 250845 - 251345 + | ribosomal protein S5 rpmD 251351 - 251530 + | ribosomal protein L30 rplO 251536 - 251970 + | ribosomal protein L15 TERM 256 251977 - 251960 - f 77 -9.9 -3.03124 | overlap 251971 251972 CTGCAGGCGGTAAGA TCGAGGA ATAA TCCTCGA AGGATGAGGTACAAT TERM 257 252413 - 252449 + G 77 -9.5 -3.58905 | opp_overlap 252412 252415 AACCGGTCTACCAAG CATGATTCCAGGGTTAG TTG CTAACCCTGACATGATG TTCTATCTGACAGCT secY 251991 - 253322 + | preprotein translocase, SecY subunit rpmJ 253353 - 253466 + | ribosomal protein L36 TERM 258 253524 - 253496 - f 87 -11.7 -3.32498 | opp_overlap 253496 253498 TACTTGATATATTAA GTTAGGCCGAGTA TTA TTCTCGGCCTACC TTTTGTGTGCAAAAG TERM 259 253496 - 253524 + F 100 -11.7 -4.52589 | opp_overlap 253496, overlap 253498 TACTTGATATATTAA GTTAGGCCGAGTA TTA TTCTCGGCCTACC TTTTGTGTGCAAAAG TERM 260 253498 - 253522 + F 87 -12.9 -2.58418 | opp_overlap 253496, overlap 253496 CTTGATATATTAAGT TAGGCCGAGTA TTA TTCTCGGCCTA CCTTTTGTGTGCAAA rpsM 253616 - 253972 + | 30S ribosomal protein S13 rpsK 253994 - 254383 + | 30S ribosomal protein S11 rpsD 254415 - 255035 + | ribosomal protein S4 rpoA 255059 - 256048 + | DNA-directed RNA polymerase, alpha subunit TERM 261 256130 - 256144 + G 79 -10 -3.54543 | opp_overlap 256128 256125 256139 AACCGCAACAGCAGC CATCGC AAA GCGATG TTTAGCAACATGGCT rplQ 256085 - 256465 + | ribosomal protein L17 TERM 262 256479 - 256516 + T 90 -13.7 -2.96711 | opp_overlap 256489, overlap 256489 256513 AATCAGAATAAGCTT TAAGAAAAAACCGAGTC TTAG GACTCGGTTTTTTTGTA TCTGTACATTATAGA TERM 263 256489 - 256506 + T 100 -11.3 -5.77988 | opp_overlap 256489, overlap 256479 AGCTTTAAGAAAAAA CCGAGTC TTAG GACTCGG TTTTTTTGTATCTGT TERM 264 256506 - 256489 - T 100 -11.3 -5.45652 | opp_overlap 256489 256479 AGCTTTAAGAAAAAA CCGAGTC TTAG GACTCGG TTTTTTTGTATCTGT fbp 257562 - 256552 - | fructose-1,6-bisphosphatase TERM 265 257610 - 257620 + H 77 -5.4 -4.98911 | CAACGCGAAGTCGGG TCAG GTA CTGA TTTATTTTTATAATA mpl 257783 - 259126 + | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 266 259614 - 259627 + G 71 -3.8 -4.91109 | opp_overlap 259599 GGGGCGACAATTATG CCTG CTGCCC CAGG TTTTTATCATCAACC VFMJ11_0254 259128 - 259745 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 267 260573 - 260563 - g 70 -5.4 -4.37763 | CTATCTAAAAAAACA GTGA CGG TCAC AAAAGGTTGGTCAGA thiB 259960 - 260976 + | thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein TERM 268 261098 - 261112 + G 70 -5.7 -4.43477 | TCTGCTTTGTTGGTG GTGCA ATTAG TGCAC TTTTAATTGAATCAC thiP 261019 - 262623 + | thiamine/thiamine pyrophosphate ABC transporter, permease protein thiQ 262623 - 263327 + | thiamine ABC transporter, ATP-binding protein TERM 269 265638 - 265628 - g 73 -5.4 -4.54343 | ATAAAGCGAAAGAAA TTGC AGA GCAA ATTGCGGCGACCGAC VFMJ11_0258 263521 - 266430 + | RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA) TERM 270 266475 - 266437 - f 83 -10.4 -3.30798 | opp_overlap 266436, overlap 266435 266438 266440 266470 266473 CATAATTAAGTAACA TCATGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCATGC CTATAGTGAGTATAA TERM 271 266474 - 266438 - f 89 -13.9 -2.57756 | opp_overlap 266436, overlap 266437 266435 266440 266470 266473 ATAATTAAGTAACAT CATGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCATG CCTATAGTGAGTATA TERM 272 266472 - 266440 - f 81 -10.7 -2.81814 | opp_overlap 266436, overlap 266438 266437 266435 266470 AATTAAGTAACATCA TGCTCTCTGAATAAT GGT ATGTTTCAGAGAGCA TGCCTATAGTGAGTA TERM 273 266881 - 266859 - g 75 -10 -3.17622 | opp_overlap 266865, overlap 266857 266860 266865 GATTGGGAGAATAGA CCAAAACAGA AAG TCTGTTTTGA GCATGGCAAACCTTC TERM 274 266880 - 266860 - g 79 -11.3 -2.50252 | opp_overlap 266865, overlap 266859 266857 266865 ATTGGGAGAATAGAC CAAAACAGA AAG TCTGTTTTG AGCATGGCAAACCTT TERM 275 266875 - 266865 - g 70 -5.4 -4.44819 | opp_overlap 266865, overlap 266860 266859 266857 GAGAATAGACCAAAA CAGA AAG TCTG TTTTGAGCATGGCAA VFMJ11_0259 266493 - 267230 + | ribosomal large subunit pseudouridine synthase A TERM 276 267235 - 267268 + T 82 -7.5 -4.52781 | opp_overlap 267238, overlap 267237 267238 AATCATCTTAATAAA AAATCAGTTCGAGAT GAAT GTCTCGAACTGAATC TTTTCATTATGGTTA TERM 277 267237 - 267266 + T 83 -10.1 -3.85899 | opp_overlap 267238, overlap 267235 267238 TCATCTTAATAAAAA ATCAGTTCGAGAT GAAT GTCTCGAACTGAA TCTTTTCATTATGGT TERM 278 267265 - 267238 - T 100 -12.9 -5.46657 | opp_overlap 267237 267235 267238 CATCTTAATAAAAAA TCAGTTCGAGA TGAATG TCTCGAACTGA ATCTTTTCATTATGG TERM 279 267238 - 267265 + T 89 -13.6 -2.90455 | opp_overlap 267238, overlap 267237 267235 CATCTTAATAAAAAA TCAGTTCGAGAT GAAT GTCTCGAACTGA ATCTTTTCATTATGG VFMJ11_0260 267718 - 267281 - | universal stress protein family protein TERM 280 267736 - 267755 + r 72 -9.3 -2.57192 | opp_overlap 267734 TTTTATTACCTAATT TGGGGAG ATGATA CTCCCCA TAGATTCCATTCAAT VFMJ11_0261 270346 - 267770 - | transporter TERM 281 270141 - 270130 - G 86 -4.4 -5.47399 | TGAATGCTAAAAAAA TAGC AAAC GCTA AGTGTATAGAGCGCG TERM 282 270629 - 270599 - R 79 -9.9 -3.18126 | gap 1, opp_overlap 270607, overlap 270602 270607 270619 AGAAAGTAGAGCGAA GGATAAAAGAGGCC ATAT GACCTCTTTTA-CC TAAAGAAGTGTTTCT TERM 283 270627 - 270602 - R 83 -11.3 -2.77926 | opp_overlap 270607, overlap 270599 270607 270619 AAGTAGAGCGAAGGA TAAAAGAGGCC ATAT GACCTCTTTTA CCTAAAGAAGTGTTT TERM 284 270622 - 270607 - R 76 -6.8 -4.55491 | opp_overlap 270607, overlap 270602 270599 270619 GAGCGAAGGATAAAA GAGGCC ATAT GACCTC TTTTACCTAAAGAAG VFMJ11_0262 271617 - 270643 - | immunogenic protein TERM 285 271933 - 271910 - R 79 -9 -3.73294 | opp_overlap 271913 CAAAAATAGGGGAAA GCACTTTATA AGGG CATAAAGTGC TTAAAATTTTGAGGA argR 272419 - 271949 - | arginine repressor mdh 272693 - 273628 + | malate dehydrogenase, NAD-dependent TERM 286 273655 - 273681 + T 100 -19.6 -4.52143 | opp_overlap 273655 TAATTGAAAGAGAAA GGGGCAGATAGT TTA ACTATCTGCCCC TTTATTATGTTTGAA TERM 287 273681 - 273655 - T 100 -19.6 -4.3665 | opp_overlap 273655 TAATTGAAAGAGAAA GGGGCAGATAGT TTA ACTATCTGCCCC TTTATTATGTTTGAA VFMJ11_0265 274681 - 273710 - | octaprenyl-diphosphate synthase rplU 274958 - 275269 + | ribosomal protein L21 rpmA 275287 - 275544 + | ribosomal protein L27 TERM 288 275587 - 275568 - f 86 -10.6 -3.67864 | opp_overlap 275568 TAAGTTAATTCTAAA GCCCTGCC AATT GGCGGGGC TTTTTATTTATGGAT TERM 289 275568 - 275587 + F 100 -12.8 -5.38958 | opp_overlap 275568 TAAGTTAATTCTAAA GCCCTGCC AATT GGCGGGGC TTTTTATTTATGGAT TERM 290 275951 - 275968 + G 71 -4.2 -4.84359 | opp_overlap 275951 CCTTAATACATTAAT CGATTA CCGTTT TAATCG TTTTTATAACGCTGA cgtA 275781 - 276953 + | Obg family GTPase CgtA TERM 291 277013 - 276985 - Tf 71 -9 -3.01243 | opp_overlap 276992, overlap 276992 TGCAGATAATAATGA TAAAAAACCGCA CTTGT TGCGGTTTTTTT TATTTAAATCATTAA TERM 292 277006 - 276992 - Tf 93 -7.1 -5.4111 | opp_overlap 276992, overlap 276985 AATAATGATAAAAAA CCGCA CTTGT TGCGG TTTTTTTTATTTAAA TERM 293 276992 - 277006 + TF 100 -7.1 -6.23545 | opp_overlap 276992 276985 AATAATGATAAAAAA CCGCA CTTGT TGCGG TTTTTTTTATTTAAA VFMJ11_0270 277354 - 277046 - | hypothetical protein TERM 294 277286 - 277272 - Gf 75 -8.6 -3.40073 | overlap 277285 ACGGTGATTAATGAA CGTTGT ATG ACAACG ACCCGTAGGGCGCCT VFMJ11_0269 277353 - 277856 + | inner membrane protein YjjP VFMJ11_0271 277849 - 278340 + | protein YjjB folA 278375 - 278842 + | dihydrofolate reductase VFMJ11_0273 279918 - 279103 - | bis(5'-nucleosyl)-tetraphosphatase TERM 295 279256 - 279246 - G 75 -5.4 -4.81083 | CCCAATGACCAAAAA TCAC TTT GTGA GAAAGGGGAAGACGA TERM 296 279952 - 279969 + r 82 -11.3 -2.53995 | opp_overlap 279952 GATAAATATAAAAAA GGTGACC ATAA GGTCACC TCAATTGAAATCAGT TERM 297 279969 - 279952 - R 100 -11.3 -5.59879 | opp_overlap 279952 GATAAATATAAAAAA GGTGACC ATAA GGTCACC TCAATTGAAATCAGT ksgA 280809 - 279991 - | dimethyladenosine transferase TERM 298 280124 - 280136 + g 71 -6.3 -4.24294 | opp_overlap 280124 AGCAATGCTTTATAA CAGTT ACG AACTG TTTTACGTCGTTGGT pdxA 281795 - 280806 - | 4-hydroxythreonine-4-phosphate dehydrogenase VFMJ11_0276 283101 - 281788 - | chaperone SurA TERM 299 282594 - 282643 + g 70 -8.9 -3.14211 | gap 1, opp_overlap 282609, overlap 282595 282597 282606 282609 GAACTGTTGCTTGAG T-TTCTTCTGCAAGAAGTTGAG CAAGACT CTCAACTTCTTGTGGAAGTATA TTAATGCGACGACGT TERM 300 282595 - 282641 + g 93 -14 -3.13403 | opp_overlap 282609, overlap 282594 282597 282606 282609 AACTGTTGCTTGAGT TTCTTCTGCAAGAAGTTGAG CAAGACT CTCAACTTCTTGTGGAAGTA TATTAATGCGACGAC TERM 301 282597 - 282639 + g 100 -16.6 -3.12895 | opp_overlap 282609, overlap 282595 282594 282606 282609 CTGTTGCTTGAGTTT CTTCTGCAAGAAGTTGAG CAAGACT CTCAACTTCTTGTGGAAG TATATTAATGCGACG TERM 302 282606 - 282630 + g 70 -8.7 -3.33087 | opp_overlap 282609, overlap 282597 282595 282594 282609 GAGTTTCTTCTGCAA GAAGTTGAG CAAGACT CTCAACTTC TTGTGGAAGTATATT TERM 303 282900 - 282927 + g 74 -4 -5.08088 | opp_overlap 282903 GTACTTGTTCACGAA GGACCGCTTCGT CAGG AAGGGGCTGTCC TTTTTCTTGAGCATT VFMJ11_0277 285529 - 283169 - | LPS-assembly protein (Organic solvent tolerance protein) VFMJ11_0278 285736 - 286587 + | DnaJ domain protein TERM 304 286632 - 286600 - T 79 -9.2 -3.47361 | opp_overlap 286600, overlap 286598 TAGAGTCATCAAAGA CGTCATATGGGCAT GTATT ATGCCCATAGGAAG TATACTTATTTGAAA TERM 305 286600 - 286632 + T 77 -9.9 -3.06509 | opp_overlap 286598 286600 TAGAGTCATCAAAGA CGTCATATGGGCATG TAT TATGCCCATAGGAAG TATACTTATTTGAAA VFMJ11_0279 287433 - 286654 - | hypothetical protein TERM 306 286790 - 286812 + g 71 -7.1 -3.90112 | opp_overlap 286788 286790, overlap 286793 AACCAATCATAAATA GAAGAGAGT TGGAC ATTCTCTTC TTTAATTAAAACCCC TERM 307 287530 - 287505 - R 100 -11.3 -5.4251 | TCTATAGACAAAAAA GAGGTTGATAC GTTC ATATCAACCTC TAACATTTCCTGAAT leuD 288162 - 287560 - | 3-isopropylmalate dehydratase, small subunit leuC 289590 - 288175 - | 3-isopropylmalate dehydratase, large subunit TERM 308 288250 - 288211 - G 74 -6.2 -4.33153 | overlap 288215 288245 GCGAATATCAACAAA GTGACCTGCAATTGCAGC AGCG GCAGCCATAGCAGGGCTC ACTAGGTGAGTTCGA TERM 309 289358 - 289379 + g 76 -7.3 -4.19177 | overlap 289363 ATTCGAGCCATTTCA CCAGAGGCA TTAA TGTCTTTGG TTTGTGTTGAAACGT leuB 290697 - 289606 - | 3-isopropylmalate dehydrogenase TERM 310 290103 - 290128 + g 72 -3.3 -5.10461 | TAGAGCTTTGTAGAA CGTTAGCTTTA TCAA TAGAGTAAACG TTTTTATTACGTAGA TERM 311 290734 - 290761 + r 75 -7 -4.2687 | opp_overlap 290737, overlap 290737 ATAATTTGGCAAATT AAAGCGGAGAAA GGTT TATCTCCGCTTA TTTATAATTTTTAGG TERM 312 290737 - 290758 + r 85 -8.7 -4.22276 | opp_overlap 290737, overlap 290734 ATTTGGCAAATTAAA GCGGAGAAA GGTT TATCTCCGC TTATTTATAATTTTT TERM 313 290758 - 290737 - R 82 -8.7 -4.06055 | opp_overlap 290734 290737 ATTTGGCAAATTAAA GCGGAGAAA GGTT TATCTCCGC TTATTTATAATTTTT leuA 292326 - 290779 - | 2-isopropylmalate synthase TERM 314 292382 - 292399 + H 75 -6.9 -4.25676 | opp_overlap 292382 ATATCCATAAAAAAA CCCGCCA TGGT TAGCGGG TTTTAAAATTTGGTT TERM 315 292399 - 292382 - H 100 -9.1 -5.65177 | opp_overlap 292382 ATATCCATAAAAAAA CCCGCCA TGGT TAGCGGG TTTTAAAATTTGGTT TERM 316 292651 - 292665 + H 71 -3.4 -5.10004 | CTTTGATGTTTATTT GTGCGC ATT GCTCGC TTTTTGATTGTTTTT VFMJ11_0284 292810 - 293454 + | transcriptional regulator TERM 317 293938 - 293921 - g 74 -4.9 -4.66535 | AATTTGCAAAAGAAA GGATTAA CTTC TCAATCC GATTTAGATCAGCAA VFMJ11_0285 293441 - 294760 + | acriflavin resistance periplasmic protein TERM 318 295822 - 295841 + G 85 -7 -5.13521 | TATTCTTTCTGGGTT GCCGCTGG TTTA CCCGTGGC TTTTTTAGGTGGTTT VFMJ11_0286 294757 - 297861 + | acriflavin resistance protein VFMJ11_0287 298874 - 297873 - | outer membrane protein TERM 319 298026 - 298052 + g 77 -10.3 -3.44229 | opp_overlap 298019 TGAATCCACACGAGT GTTACTGTGAC CTGCT GTTACAGTAAC TTCTCCTGCTAACGT TERM 320 300426 - 300438 + G 79 -9.1 -3.79747 | opp_overlap 300423 300426 TCGTTTTGATAATTA CGCAG GCC CTGCG TTTGATGATGAATAA dnaB 299056 - 300453 + | replicative DNA helicase TERM 321 301119 - 301131 + G 75 -7.7 -4.08216 | TGGCATTATTATGTA TGGTG TTT CACCA TTTTCAGAACAATCA alr_2 300475 - 301548 + | alanine racemase TERM 322 301599 - 301582 - g 71 -7 -4.07885 | opp_overlap 301582 CATTTTCTTTTAAAA GCGCTA CTGGTT TAGCGC TTTTTCTTATTTCTA TERM 323 301582 - 301599 + G 93 -7 -5.42164 | opp_overlap 301582 CATTTTCTTTTAAAA GCGCTA CTGGTT TAGCGC TTTTTCTTATTTCTA TERM 324 302211 - 302195 - g 73 -8.1 -3.80625 | overlap 302189 TTGGGATAATCGAAA TAGTGTT CGA AACACTA CGCATGGTTCTCGCA VFMJ11_0290 301560 - 302765 + | hypothetical protein TERM 325 303257 - 303245 - g 70 -2.7 -5.02074 | opp_overlap 303254, overlap 303254 TCAGTGGTGAAAAAA TCAAT AAA ACTGA AGGTCGTTCAGTGCT TERM 326 303268 - 303254 - g 74 -4.3 -4.95211 | opp_overlap 303254, overlap 303245 AAAAAATCAATAAAA CTGAA GGTCG TTCAG TGCTTCATACTGCAC TERM 327 303373 - 303362 - g 75 -3 -5.32882 | CAGTATTAGAAAAAA TGAA AGGC TTCA CAGAGCGTCTAATTT pgi 302980 - 304632 + | glucose-6-phosphate isomerase TERM 328 304654 - 304683 + T 82 -10.1 -3.52906 | opp_overlap 304659, overlap 304659 TTGTTGATGTGTTAT TGAAAGAGCTGAC TTCG GTCGGCTCTTTTG TATTTATACCAATCC TERM 329 304659 - 304678 + T 100 -10 -4.84918 | opp_overlap 304659, overlap 304654 GATGTGTTATTGAAA GAGCTGAC TTCG GTCGGCTC TTTTGTATTTATACC TERM 330 304678 - 304659 - T 71 -7.8 -3.6502 | opp_overlap 304659 304654 GATGTGTTATTGAAA GAGCTGAC TTCG GTCGGCTC TTTTGTATTTATACC TERM 331 304901 - 304880 - T 93 -8.1 -5.49234 | opp_overlap 304880 ACAGGCAATAAAAAA GGTTGATAC CTAA ATATCAACC TCTATCATTCTAGTC VFMJ11_0292 305410 - 304949 - | chemotaxis protein CheX VFMJ11_0293 305887 - 305438 - | zinc uptake regulation protein TERM 332 305931 - 305942 + H 74 -3 -5.26918 | opp_overlap 305931, overlap 305921 TTGAGGAGTTTAACA TAAC TCTC GTTA TTTTTTATCCACTAT VFMJ11_0294 306067 - 307053 + | tRNA-dihydrouridine synthase A VFMJ11_0295 307172 - 307873 + | hypothetical protein TERM 333 307929 - 307904 - f 95 -14.9 -3.05268 | opp_overlap 307904, overlap 307906 GAATTATTTTTAAGA TAGCGATTCAG GTGA CTGAATCGCTA TTTTTTTATTTTAAA TERM 334 307904 - 307929 + F 100 -14.9 -6.09196 | opp_overlap 307904 307906 GAATTATTTTTAAGA TAGCGATTCAG GTGA CTGAATCGCTA TTTTTTTATTTTAAA TERM 335 307927 - 307906 - f 88 -13.1 -3.08073 | opp_overlap 307904, overlap 307904 ATTATTTTTAAGATA GCGATTCAG GTGA CTGAATCGC TATTTTTTTATTTTA TERM 336 307988 - 308011 + F 81 -9.7 -3.40403 | opp_overlap 307990 CTTATAAAGTGGATA CAGCCATAA GTTGTG TTATGGCTG TTGTCGTAAGAAGGA VFMJ11_0296 308034 - 308264 + | hypothetical protein TERM 337 309164 - 309154 - g 72 -3.2 -5.12617 | TAACCAGCCAAAAAA TCAC AGG GCGA GATTCAGGTAAAGAT VFMJ11_0297 308400 - 310214 + | sulfite reductase (NADPH) flavoprotein, alpha-component cysI 310214 - 311944 + | sulfite reductase (NADPH) hemoprotein, beta-component cysH 311937 - 312698 + | phosphoadenosine phosphosulfate reductase TERM 338 312758 - 312731 - T 87 -12.8 -2.98436 | opp_overlap 312732 312736, overlap 312736 AATGAACCTAAAGGA TTAAAGGCAGCG ATAA CGCTGCCTTTAT TTGTTTATATTATTT TERM 339 312732 - 312757 + T 100 -16.3 -4.72277 | opp_overlap 312731 312736, overlap 312736 ATGAACCTAAAGGAT TAAAGGCAGCG ATAA CGCTGCCTTTA TTTGTTTATATTATT TERM 340 312736 - 312753 + T 100 -12.7 -4.84602 | opp_overlap 312731 312736, overlap 312732 ACCTAAAGGATTAAA GGCAGCG ATAA CGCTGCC TTTATTTGTTTATAT TERM 341 312753 - 312736 - T 95 -12.7 -3.89412 | opp_overlap 312736 312732, overlap 312731 ACCTAAAGGATTAAA GGCAGCG ATAA CGCTGCC TTTATTTGTTTATAT VFMJ11_0300 313247 - 312783 - | VcgC TERM 342 313221 - 313237 + g 85 -3.7 -5.68023 | GAGTGAAAGTGCAAG CGTTGAT AAG ATTAGCG TTTTTTTCATTGTCA TERM 343 313335 - 313316 - R 100 -10 -6.0427 | opp_overlap 313316 ATGACACAAAAAAAA GCGATACC CATA GGCATCGC TTTCTAATTTTATAT TERM 344 313316 - 313335 + r 78 -7.8 -4.24984 | opp_overlap 313316 ATGACACAAAAAAAA GCGATACC CATA GGCATCGC TTTCTAATTTTATAT VFMJ11_0301 313991 - 313371 - | fkbp-type 22 kda peptidyl-prolyl cis-trans isomerase TERM 345 314180 - 314161 - g 74 -6.4 -4.34711 | overlap 314162 AAAATGAATGTAAAA CGCCCAGA TTTT TCTGAGCA ATTGGCTAATTTAAA VFMJ11_0302 314131 - 314781 + | opacity associated proteins OapA VFMJ11_0303 315642 - 314791 - | transporter, drug/metabolite exporter family VFMJ11_0304 316114 - 315662 - | acetyltransferase VFMJ11_0305 316749 - 316180 - | transcription regulator, Crp family TERM 346 316818 - 316841 + r 100 -14 -4.77173 | opp_overlap 316818 ATACAGATAAAAAAA TAGCATGGTG AAAT CACCATGCTA TTTGTTTTGTAGAAG TERM 347 316841 - 316818 - R 100 -14 -5.77988 | opp_overlap 316818 ATACAGATAAAAAAA TAGCATGGTG AAAT CACCATGCTA TTTGTTTTGTAGAAG cpdB 318848 - 316866 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 348 319125 - 319108 - H 84 -5.7 -5.52096 | AAATCGAATAAAAAA TGAAATT TTAG AATTTCA GGTAATAAAGTAACC TERM 349 319682 - 319699 + G 70 -5.5 -4.39696 | opp_overlap 319682 319684 GTGATGAAGAAAAGT CACGTGC CAAA GAACGTG TTTATTCATTTAGAG VFMJ11_0307 319258 - 320166 + | sulfate adenylyltransferase subunit 2 VFMJ11_0308 320196 - 321632 + | sulfate adenylyltransferase subunit 1 TERM 350 321733 - 321745 + G 80 -7.7 -4.48176 | ACCAAGCGTCATATT TGCAG GCT CTGCA TTTATTGCTTTTATG TERM 351 323168 - 323184 + G 72 -4.3 -4.77567 | ATGGCATTGGGGTAT GGCGTTG ATC CCATGCC TTTTATTATGGCGGT VFMJ11_0309 321644 - 323371 + | transporter, divalent anion:sodium symporter family cysC 323386 - 324000 + | adenylylsulfate kinase VFMJ11_0311 324989 - 324090 - | hypothetical protein TERM 352 325281 - 325233 - R 91 -13 -3.18264 | gap 1, opp_overlap 325227 325229 GTGTTTATGCAGTAA CACTGGTTTA-TTTATCTAATTA TATT TAACTAAATAAAATAAACCAGTG TAAAATATTTGTTAA VFMJ11_0312 325785 - 325297 - | hypothetical protein VFMJ11_0313 327056 - 325797 - | permease VFMJ11_0314 327739 - 327053 - | ABC transporter ATP-binding protein TERM 353 327768 - 327747 - R 74 -6.5 -4.3467 | overlap 327748 ATGTTCATAGTAAAA CTGGCGATG TTAC CACCGCCAT ACCTAAGCTATAGAG TERM 354 327767 - 327748 - R 79 -10 -3.2032 | overlap 327747 TGTTCATAGTAAAAC TGGCGATG TTAC CACCGCCA TACCTAAGCTATAGA VFMJ11_0315 328432 - 327776 - | hypothetical protein TERM 355 328281 - 328304 + g 73 -10.4 -2.8829 | opp_overlap 328270, overlap 328280 328285 ACAACACCATGGACA TGAGCATCGT GGTG ACGATGTTCA GTTTCATGATGCTCT VFMJ11_0316 329389 - 328838 - | hypothetical protein TERM 356 329645 - 329659 + G 71 -7.2 -3.9281 | CCATTGCAAGTCGCT CGTTTT GTA AAAACG TTATTTAAGGGTAAT VFMJ11_0317 329597 - 329812 + | hypothetical protein TERM 357 329857 - 329836 - T 79 -8.7 -3.71517 | opp_overlap 329836 TAATAGTTAATAGAA GGTGCTCGT GGTC ATGAGCACC TTTTTTGTTTATATG TERM 358 329836 - 329857 + T 100 -10.9 -5.76237 | opp_overlap 329836 TAATAGTTAATAGAA GGTGCTCGT GGTC ATGAGCACC TTTTTTGTTTATATG msrA 330444 - 329866 - | peptide-methionine (S)-S-oxide reductase VFMJ11_0319 330559 - 332280 + | outer membrane protein TERM 359 332344 - 332331 - g 82 -3.8 -5.46657 | GAGTTGAAGAAAAAA CGAC GTTTTA GTCG CCACTGTCTTTGCTT TERM 360 332953 - 332943 - g 79 -3.2 -5.42862 | ACATCGTCAAAAAAA GATG ATG CACC TATCGTTTTACCTGA VFMJ11_0320 332292 - 336077 + | hypothetical protein TERM 361 336325 - 336315 - Tf 82 -5.4 -5.22943 | ATTAAATTTAAAAAA GTGT TTG ACAC GAAAGTTTAATTAGC TERM 362 336460 - 336482 + TF 76 -4.2 -5.0538 | opp_overlap 336453 336466, overlap 336456 336461 GATAATCACTATTTG CGAAAGCAAA CTG TTTGTTTTCA TTTTTTAAAATGAAA TERM 363 336461 - 336481 + TF 71 -7.7 -3.62746 | opp_overlap 336453 336466, overlap 336456 336460 ATAATCACTATTTGC GAAAGCAAA CTG TTTGTTTTC ATTTTTTAAAATGAA TERM 364 338143 - 338124 - Tf 72 -9.2 -2.65808 | opp_overlap 338130, overlap 338121 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 365 338534 - 338515 - Tf 73 -8.6 -3.23708 | overlap 338518 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGTTTA TERM 366 339062 - 339050 - Tf 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 367 339855 - 339839 - Tf 85 -9.4 -4.08546 | overlap 339851 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 368 342993 - 342974 - Tf 72 -9.2 -2.65808 | opp_overlap 342980, overlap 342971 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 369 343496 - 343477 - Tf 73 -8.6 -3.23708 | overlap 343480 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGTTTA TERM 370 344024 - 344012 - Tf 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 371 344817 - 344801 - Tf 85 -9.4 -4.08546 | overlap 344813 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 372 346776 - 346797 + TF 100 -13.1 -5.14477 | opp_overlap 346776 CACTTATTTAAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTTACATCTGTA TERM 373 346797 - 346776 - Tf 100 -13.1 -5.09895 | opp_overlap 346776 CACTTATTTAAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTTACATCTGTA TERM 374 346984 - 346963 - Tf 100 -13.1 -4.62783 | opp_overlap 346963 CACTTATTTGAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTACGTCTATAG TERM 375 346963 - 346984 + TF 100 -13.1 -4.72846 | opp_overlap 346963 CACTTATTTGAAAAA GCCCTAATC GAAA GATTAGGGC TTTTTACGTCTATAG TERM 376 347155 - 347138 - Tf 95 -8.5 -5.05782 | opp_overlap 347137 347138 ACTTATTTGAAAAAA CCTAATC GAAA GATTAGG GCTTTTTACGTCTAT TERM 377 347304 - 347321 + TF 75 -8.4 -3.71686 | opp_overlap 347304, overlap 347289 TTGAGTTAAAAAAAA GAGGCG AACAAG CGCCTC TTCTATTAACTTCAA TERM 378 347321 - 347304 - Tf 100 -8.4 -5.81412 | opp_overlap 347304 347289 TTGAGTTAAAAAAAA GAGGCG AACAAG CGCCTC TTCTATTAACTTCAA VFMJ11_0327 348539 - 347340 - | NhaP-type Na+/H+ and K+/H+ antiporter TERM 379 348522 - 348538 + Gg 77 -5.1 -4.98616 | GGATCCGGCAGTAAT TGCAATC GTT GTTTGCA TTTTTCCTATTTTAC VFMJ11_0326 348505 - 348624 + | hypothetical protein TERM 380 348679 - 348694 + FH 80 -4.8 -5.24291 | TCATTTTCCGCTCTA TTTGAT AAAT ATCAAA TTTTATTTTCGTTTT TERM 381 350031 - 350048 + G 78 -4.1 -5.18561 | opp_overlap 350021, overlap 350021 350019 AGGCATGCTTGATGC CGAAGCA TGTA TGGTTCG TTTTTTAAATCTTTG metH 348799 - 352479 + | methionine synthase TERM 382 352537 - 352501 - T 84 -12 -2.73243 | gap 1, opp_overlap 352501 352508, overlap 352508 ATTGACCTTTTAAAC TA-AAAAATGCCCATTA AATG TAATGGGCATTTTTGTA TGTATCAATTATTGT TERM 383 352501 - 352537 + T 85 -12 -2.9857 | gap 1, opp_overlap 352501 352508, overlap 352508 ATTGACCTTTTAAAC TA-AAAAATGCCCATTA AATG TAATGGGCATTTTTGTA TGTATCAATTATTGT TERM 384 352529 - 352508 - T 100 -11.7 -5.37593 | opp_overlap 352501 352508, overlap 352501 TTTTAAACTAAAAAA TGCCCATTA AATG TAATGGGCA TTTTTGTATGTATCA TERM 385 352508 - 352529 + T 100 -11.7 -5.07275 | opp_overlap 352508 352501, overlap 352501 TTTTAAACTAAAAAA TGCCCATTA AATG TAATGGGCA TTTTTGTATGTATCA VFMJ11_0329 353898 - 352546 - | asparate kinase, monofunctional class TERM 386 353371 - 353388 + g 81 -5.6 -5.08601 | TACCACAATCTGTTG CTGACA AAGTGG TGTCAG TTTTTCTTGAGCTAA VFMJ11_0330 354350 - 355462 + | serine--pyruvate aminotransferase TERM 387 355476 - 355497 + T 79 -10.2 -2.94595 | opp_overlap 355476, overlap 355478 AAATATTAAATAAAA CAGCCACT TAATTC AGTGGCTG TCTATGATAACAGTT TERM 388 355497 - 355476 - T 100 -10.2 -5.00923 | opp_overlap 355476 355478 AAATATTAAATAAAA CAGCCACT TAATTC AGTGGCTG TCTATGATAACAGTT VFMJ11_0331 357274 - 355514 - | lipid A core - O-antigen ligase TERM 389 356319 - 356329 + g 72 -4.6 -4.83169 | opp_overlap 356319 TTACCATAACCATAA CCTG TGA CGGG TTTTTCTAAAAACAT TERM 390 357293 - 357328 + r 77 -9.2 -3.254 | opp_overlap 357298 357302, overlap 357298 357301 357302 CCAACTATTTCCTTA TATAATAAAGCCAACA AAAA TGTTGGCCTTATTCTA TCTTATCCATAGGTG TERM 391 357323 - 357298 - R 89 -11.3 -3.48593 | opp_overlap 357293 357298 357301 357302, overlap 357302 TATTTCCTTATATAA TAAAGCCAACA AAAA TGTTGGCCTTA TTCTATCTTATCCAT TERM 392 357298 - 357323 + r 81 -9.1 -3.7319 | opp_overlap 357298 357302, overlap 357293 357301 357302 TATTTCCTTATATAA TAAAGCCAACA AAAA TGTTGGCCTTA TTCTATCTTATCCAT TERM 393 357302 - 357319 + r 77 -9.9 -2.98105 | opp_overlap 357298 357302, overlap 357301 357298 357293 TCCTTATATAATAAA GCCAACA AAAA TGTTGGC CTTATTCTATCTTAT TERM 394 357319 - 357302 - R 100 -9.9 -4.38927 | opp_overlap 357302 357301 357298 357293, overlap 357298 TCCTTATATAATAAA GCCAACA AAAA TGTTGGC CTTATTCTATCTTAT uvrA 360196 - 357371 - | excinuclease ABC, A subunit TERM 395 359324 - 359314 - G 71 -6.8 -4.09685 | GCTTATCGTCTAAAA CGAC TCT GTCG GCATCAAAGTATTGT TERM 396 360315 - 360349 + r 100 -10.9 -4.49906 | gap 1, opp_overlap 360320, overlap 360317 360320 ATTGGAGAGGTGAAA CAA-AACGCCCCATGT CTAA ACATGGGGCGTTATTA TTTATTTAAGTGTTA TERM 397 360317 - 360346 + r 100 -15.1 -4.34285 | opp_overlap 360320, overlap 360315 360320 TGGAGAGGTGAAACA AAACGCCCCATGT CTAA ACATGGGGCGTTA TTATTTATTTAAGTG TERM 398 360320 - 360343 + r 100 -16.8 -4.26693 | opp_overlap 360320, overlap 360317 360315 AGAGGTGAAACAAAA CGCCCCATGT CTAA ACATGGGGCG TTATTATTTATTTAA TERM 399 360343 - 360320 - R 100 -16.8 -4.89521 | opp_overlap 360317 360315 360320 AGAGGTGAAACAAAA CGCCCCATGT CTAA ACATGGGGCG TTATTATTTATTTAA galU 361237 - 360368 - | UTP-glucose-1-phosphate uridylyltransferase TERM 400 360973 - 360991 + g 74 -6 -4.38748 | AATCAATCAGTTCAC GAACATCT TCA AGAAGTTC TTCTTTGTTTGTACC VFMJ11_0334 361822 - 361418 - | hypothetical protein VFMJ11_0335 362942 - 361809 - | glycosyltransferase TERM 401 362106 - 362116 + g 71 -4 -4.8622 | TTCATGATATGACGG CATT ACA AATG TTTTTGCTTGAGAGA VFMJ11_0336 364152 - 362947 - | lipopolysaccharide N-acetylglucosaminyltransferase TERM 402 363749 - 363764 + g 74 -6.2 -4.371 | opp_overlap 363713 TTGCGGTACATGGTG TAGCTT GGAC AAGCTA TTTTAGTATCGTGGG TERM 403 363917 - 363941 + g 70 -8.7 -3.37141 | opp_overlap 363936, overlap 363936 TTTTCACATGCTTGT CGGTTATGAAT GAA ATTCATAGCTG TTGCTAGTTTATCTT VFMJ11_0337 365147 - 364149 - | glycosyl transferase, group 2 family TERM 404 365039 - 365058 + g 100 -6.4 -5.88471 | CCGCAACAATAATTT TATGAGGG AATA CCCCCATA TTTTTTTTGATACTG VFMJ11_0338 366519 - 365140 - | hypothetical protein TERM 405 365241 - 365218 - G 74 -3.8 -5.12785 | opp_overlap 365218, overlap 365238 TAAGTAAAAAAGAAA TTGAAGCATG GGAA CAAGCATCAA TATTTGACTATATGG VFMJ11_0339 367727 - 366522 - | sensor protein UhpB VFMJ11_0340 369912 - 367732 - | chain length regulator TERM 406 369419 - 369399 - G 83 -12.7 -2.72049 | opp_overlap 369397 369397, overlap 369401 TATAGCTTTCAACTA CAGCATTAG CAA CTAATGCTG ACATTTCAGAATCTT TERM 407 369417 - 369401 - G 71 -9.5 -2.90392 | opp_overlap 369397 369397, overlap 369399 TAGCTTTCAACTACA GCATTAG CAA CTAATGC TGACATTTCAGAATC VFMJ11_0341 370503 - 369916 - | periplasmic protein involved in polysaccharide export VFMJ11_0342 371820 - 370504 - | transcriptional regulator, TetR family TERM 408 371775 - 371750 - G 88 -10.6 -4.06611 | opp_overlap 371748 TAAGCATAACAAGAA CTGCTTACTA ATGAAG TAGTAAGCAG TATAAGTTTGTTGAA VFMJ11_0343 372907 - 371804 - | undecaprenyl-phosphate glucose phosphotransferase TERM 409 373488 - 373508 + H 70 -8.3 -3.24747 | opp_overlap 373487, overlap 373487 ACTGTATATATAACC GGGTGAAAA CCG TTTTCCCCC TTAATAATCTGGAGC VFMJ11_0344 373529 - 374062 + | single-stranded DNA-binding protein TERM 410 374099 - 374117 + T 100 -13.2 -5.46276 | opp_overlap 374099 ATTTAAAATAAAAAA GCCTCGAT GAT ATCGAGGC TTTTTTCTATCTGTT TERM 411 374117 - 374099 - T 100 -13.2 -5.80951 | opp_overlap 374099 ATTTAAAATAAAAAA GCCTCGAT GAT ATCGAGGC TTTTTTCTATCTGTT VFMJ11_0345 374803 - 374147 - | hypothetical protein TERM 412 374291 - 374301 + g 73 -5.4 -4.57569 | AGCATCTGTACCGTG TTGC TCT GCAA TTTTTCCACCAATGA VFMJ11_0346 375041 - 377020 + | diguanylate cyclase/phosphodiesterase domain 1 TERM 413 378555 - 378539 - g 78 -3.7 -5.29846 | AACTTGAAATAAAAA CAGAC GATAAAG GTCTG GTGTCATTTATTCTA VFMJ11_0347 377077 - 378603 + | hypothetical protein VFMJ11_0348 378596 - 379240 + | msha biogenesis protein mshj VFMJ11_0349 379242 - 379583 + | hypothetical protein VFMJ11_0350 379595 - 381241 + | general secretion pathway protein D TERM 414 381329 - 381347 + G 93 -13.2 -3.28405 | overlap 381335 CTGTTTCATGGGTTA TCGCCTCA TTA TGAGGCGA TTCATACTGTGTTGT VFMJ11_0351 381254 - 382102 + | general secretion pathway protein A TERM 415 382195 - 382159 - g 85 -3.7 -5.59962 | overlap 382162 GAAAACAAAGAAAAA CAGCACTCATTATCTCC TGC GGATATACCGAATGTTG AGTCAAAATACAAAG TERM 416 382921 - 382900 - g 71 -3.7 -4.91511 | opp_overlap 382894 382887 382906, overlap 382906 AGTCTATTACAAAAA GAGCAAC AGCCAGAA GCTGCTC TTTCTGTATTGGAGT VFMJ11_0352 382099 - 383226 + | tetratricopeptide repeat family protein VFMJ11_0353 383226 - 384950 + | type IV pilus assembly protein TapB TERM 417 385145 - 385134 - g 76 -4.4 -5.05782 | ATGGATTGGAAAAAA TGGT TGCA ACCA AGTATTCCTTTAGAA VFMJ11_0354 384960 - 386186 + | general secretion pathway protein F VFMJ11_0355 386189 - 386644 + | hypothetical protein VFMJ11_0356 386731 - 387294 + | msha pilin protein mshb VFMJ11_0357 387459 - 387929 + | MshA, mannose-sensitive haemaglutinin TERM 418 387956 - 387972 + F 100 -9.4 -5.76633 | opp_overlap 387956 ATCTTTAGTTAAAAA CCAGCG ATCTC CGCTGG TTTTTTTGTATCTAA TERM 419 387972 - 387956 - f 100 -10.1 -4.66163 | opp_overlap 387956 ATCTTTAGTTAAAAA CCAGCGA TCT CCGCTGG TTTTTTTGTATCTAA VFMJ11_0358 388056 - 388652 + | prepilin-type N- cleavage/methylation domain protein VFMJ11_0359 388649 - 389230 + | MshD VFMJ11_0360 389230 - 389955 + | prokaryotic N- methylation motif domain protein VFMJ11_0361 389987 - 390379 + | msha biogenesis protein mshp TERM 420 392768 - 392755 - g 76 -2.3 -5.40474 | opp_overlap 392755 ATGTGGTCAAAAAAA GAGGG TGTA CCTTC ATTTGGAAATCGCAC VFMJ11_0362 390379 - 393432 + | hypothetical protein TERM 421 393464 - 393447 - f 82 -5.6 -5.30199 | opp_overlap 393447 393454 AAAAATGAATAAAAA TCCTGA TTTGCT TCAGGA TTCTGTAGCAATACC TERM 422 393468 - 393506 + F 83 -9.6 -3.78351 | opp_overlap 393476 393478, overlap 393454 TTTGCTTCAGGATTC TGTAGCAATACCTTGCTG ATT CGGCTAGGCATTGGTACA TTTAATAAAATTTAT VFMJ11_0363 393555 - 394598 + | Rod shape-determining protein MreB mreC 394697 - 395479 + | rod shape-determining protein MreC mreD 395469 - 395960 + | rod shape-determining protein MreD TERM 423 396178 - 396165 - g 72 -3.1 -5.16969 | GATAGAAAAAACAAA GAGTA AATA TACCC CTGTATTGGGCTCTG TERM 424 396192 - 396220 + G 88 -11.1 -4.07568 | overlap 396195 CCCTGTATTGGGCTC TGACACCATCGTT GTT ATCGATGGTGTTA TTTTAGAAAAACCAA TERM 425 396195 - 396217 + G 90 -10.6 -4.17048 | overlap 396192 TGTATTGGGCTCTGA CACCATCGTT GTT ATCGATGGTG TTATTTTAGAAAAAC maf_1 395971 - 396546 + | septum formation protein Maf VFMJ11_0367 396566 - 398035 + | ribonuclease G TERM 426 398093 - 398118 + G 87 -12.7 -3.27298 | GCTTGATGGGATTAT TGCTGCTGGTA TTTT TACTAGCAGCA TTAGTCATTACCAGC TERM 427 398780 - 398764 - g 70 -8.7 -3.32832 | opp_overlap 398760 398764, overlap 398759 GCTAAAAATATTCAA GTGACCC CTT GGATCAC TGATTCTATCCAAAA VFMJ11_0368 398047 - 401916 + | hypothetical protein VFMJ11_0369 401931 - 402749 + | putative Nitrilase 1 family protein TERM 428 402792 - 402755 - f 73 -8.7 -3.26031 | opp_overlap 402760, overlap 402760 TCTACTTTAAATACA GAAAAGAGTGAGTTT AGCCTATA AAACTCACTCTTTTT TCTTCATAATTAAAC TERM 429 402760 - 402787 + F 95 -8.6 -5.52023 | opp_overlap 402755 402760 TTTAAATACAGAAAA GAGTGAGTTT AGCCTATA AAACTCACTC TTTTTTCTTCATAAT TERM 430 402787 - 402760 - f 93 -8.6 -4.74013 | opp_overlap 402760, overlap 402755 TTTAAATACAGAAAA GAGTGAGTTT AGCCTATA AAACTCACTC TTTTTTCTTCATAAT tldD 402843 - 404288 + | TldD protein TERM 431 404343 - 404315 - T 93 -6 -5.9003 | opp_overlap 404317, overlap 404317 AAATGAATAAAAAAA GAGCCAAGGATC ATTAA GATGCTTGGCTT TTTTATTAACAAAAA TERM 432 404317 - 404341 + T 95 -8.6 -5.4505 | opp_overlap 404315 404317 ATGAATAAAAAAAGA GCCAAGGATC ATTAA GATGCTTGGC TTTTTTATTAACAAA TERM 433 404341 - 404317 - T 89 -8.6 -4.55661 | opp_overlap 404317, overlap 404315 ATGAATAAAAAAAGA GCCAAGGATC ATTAA GATGCTTGGC TTTTTTATTAACAAA VFMJ11_0371 404905 - 404375 - | hypothetical protein TERM 434 404623 - 404653 + g 70 -8.4 -3.35867 | overlap 404625 GCTTGTTGCGAATTT TATCTAGAGCTAAT TGG ATTGGCTCTGGATC TTCATTACGCATTAG TERM 435 404625 - 404651 + g 79 -11 -3.24597 | overlap 404623 TTGTTGCGAATTTTA TCTAGAGCTAAT TGG ATTGGCTCTGGA TCTTCATTACGCATT pmbA 405024 - 406367 + | PmbA protein TERM 436 406446 - 406420 - T 100 -10.8 -5.73978 | opp_overlap 406420 AGCATAAATAAAAAA GCGCGCAATCAT TAA ATGAGAGCGCGC TTTTTTTATGTCATG TERM 437 406420 - 406446 + T 100 -10.8 -5.74122 | opp_overlap 406420 AGCATAAATAAAAAA GCGCGCAATCAT TAA ATGAGAGCGCGC TTTTTTTATGTCATG mgtE 407830 - 406475 - | magnesium transporter VFMJ11_0374 408259 - 407981 - | phosphocarrier protein HPr VFMJ11_0375 409123 - 408278 - | hypothetical protein VFMJ11_0376 409600 - 409157 - | hypothetical protein TERM 438 409246 - 409257 + g 72 -4.4 -4.66163 | opp_overlap 409246 409248 TGAGTTTTTCAGCAA CACT AGAA AGTG TTTTTAGATGAAGCT raiA_1 409889 - 409602 - | ribosomal subunit interface protein rpoN 411378 - 409909 - | RNA polymerase sigma-54 factor TERM 439 411156 - 411167 + g 70 -3.6 -4.88293 | CTGGTGTTTCTTGTT CTGC TGAT GCGG TTTCTTTTTCCGCTT TERM 440 411224 - 411247 + g 70 -8.2 -3.64822 | GGTGTGCTTAATGCT TCCTCTTCTA CATC TAGAAGTGGA TTTGAGTCGAGCGCT VFMJ11_0379 412127 - 411402 - | ABC transporter ATP-binding protein lptA 412627 - 412130 - | lipopolysaccharide transport periplasmic protein LptA VFMJ11_0381 413171 - 412608 - | probable exported protein VFMJ11_0382 413728 - 413168 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) VFMJ11_0383 414702 - 413728 - | sugar isomerase, KpsF/GutQ family TERM 441 413952 - 413937 - G 73 -6.8 -4.21194 | TCTTATTATCTAAAA GGCGAC GTAA GTCACC ATCAGTGAAGATACC VFMJ11_0384 415859 - 414888 - | putative K+-dependent Na+/Ca+ exchanger family protein TERM 442 415617 - 415605 - G 70 -7.7 -3.71279 | opp_overlap 415604 415602 415605 AATACCTAAAATTAA TGCGA TGT TCGCA ATGTTTGAACCAATA TERM 443 416250 - 416230 - g 74 -9.1 -3.53761 | opp_overlap 416230 TAATTGGTGGGCAAA TACTTCCTG AAT CAGGAAATA TCCATTTTGAAGAGT VFMJ11_0385 416061 - 416867 + | toluene tolerance protein TTG2A VFMJ11_0386 416860 - 417654 + | toluene tolerance protein Ttg2B, putative VFMJ11_0387 417658 - 418152 + | toluene tolerance protein TTG2C VFMJ11_0388 418152 - 418793 + | toluene tolerance protein TTG2D VFMJ11_0389 418793 - 419113 + | YrbB protein TERM 444 419275 - 419255 - g 71 -3.9 -4.84182 | TGAAAAAACAACAAA CCATCTATG GAC CTTTGATGG AGCATATCTCAACGA VFMJ11_0390 419113 - 419370 + | toluene tolerance protein TTG2F murA 419382 - 420650 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 445 420695 - 420714 + F 100 -9.3 -5.5604 | GTATTAAAGTGGAAG CCGGGTA TATTAC TACCCGG TTTTTTATTGGTTGG VFMJ11_0392 420798 - 421526 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 446 421517 - 421503 - f 74 -6.4 -4.38369 | GAATTAAATAAAGAA GTTGCA GAG CGCAAC CAAGCGTAATTAATT TERM 447 421552 - 421573 + F 95 -8.7 -5.75538 | opp_overlap 421534 421532 421552 TTAAATTTTATCTAA GGCATACGG TTTT CTGTGTGCC TTTTTCTTTTTTAGA idi 421598 - 422143 + | isopentenyl-diphosphate delta-isomerase TERM 448 422166 - 422199 + T 84 -8.3 -4.61284 | opp_overlap 422171, overlap 422171 TTCTTTTATTAGATA AAAAATAAGGCAGAA GAAA TTCTGCCTTATTTCG TTTTAATTTAGTGTT TERM 449 422171 - 422194 + T 100 -12.6 -4.29472 | opp_overlap 422171, overlap 422166 TTATTAGATAAAAAA TAAGGCAGAA GAAA TTCTGCCTTA TTTCGTTTTAATTTA TERM 450 422194 - 422171 - T 100 -12.6 -5.39721 | opp_overlap 422171 422166 TTATTAGATAAAAAA TAAGGCAGAA GAAA TTCTGCCTTA TTTCGTTTTAATTTA VFMJ11_0394 422607 - 422218 - | endoribonuclease L-PSP, putative TERM 451 422402 - 422382 - G 71 -4 -4.83615 | GATCTTTTACAAAAA CTGTCATT TTTAC AATGTCAG ATACAGTTAGGCCTG TERM 452 422726 - 422704 - R 100 -11.3 -4.68705 | ATAACCGTAAGAAAA CAGCCCCGA GAATA TCGAGGCTG AGAAGAGAATCAAAT pyrI 423210 - 422746 - | aspartate carbamoyltransferase, regulatory subunit pyrB 424153 - 423224 - | aspartate carbamoyltransferase TERM 453 424214 - 424194 - R 100 -9 -6.02546 | opp_overlap 424194 TGAAATCAAAAAAAA GCCCCCTA ATAAA TAGGAGGC TTTAAAAATTGGGTT argF 425403 - 424399 - | ornithine carbamoyltransferase arcA 426736 - 425516 - | arginine deiminase TERM 454 426552 - 426567 + g 83 -9 -4.11751 | AAGAGTACATCGACG CCTTGG TTTT CCAAGG TTTTAACAAATTGGT TERM 455 426586 - 426598 + g 79 -5.5 -4.93296 | TAACAAATTGGTCGT GCTCT AAA AGGGC TTTTTCTACTGATAG VFMJ11_0399 426890 - 427306 + | hypothetical cytosolic protein TERM 456 427331 - 427359 + F 100 -12.5 -5.42259 | opp_overlap 427331 427329 ACTAAAGAACATAGA TGCCCTAGATGTG AAT CATGTCTGGGGCA TTTTTTTAAGGATGA VFMJ11_0400 427377 - 428219 + | beta-galactosidase/beta-glucuronidase TERM 457 428418 - 428449 + T 100 -14.6 -4.5287 | opp_overlap 428423, overlap 428423 ACATTGGTATAAATA AAAAAGGTCGATGC GTTA GCATCGACCTTTTA TTTTGCTTGCTTTAC TERM 458 428444 - 428423 - T 100 -14.5 -5.72622 | opp_overlap 428423 428418 GGTATAAATAAAAAA GGTCGATGC GTTA GCATCGACC TTTTATTTTGCTTGC TERM 459 428423 - 428444 + T 100 -14.5 -5.18643 | opp_overlap 428423, overlap 428418 GGTATAAATAAAAAA GGTCGATGC GTTA GCATCGACC TTTTATTTTGCTTGC valS 431339 - 428466 - | valyl-tRNA synthetase TERM 460 430744 - 430757 + g 80 -2.3 -5.61913 | overlap 430745 AGCGGATAGCGGAAG TGCCA CATG TGGCC TTTTTTGTCTTTGTT TERM 461 431018 - 431033 + g 85 -6.8 -5.13343 | TGTCGATGAAAGCAT CACGGC CGTA GTCGTG TTTTGTTTTGCCTTC TERM 462 431263 - 431276 + g 74 -3.8 -5.06816 | GAAGTGTCACCGTGT GGCT TAAAGT AGCC TTTTTCTTCCCAAGT VFMJ11_0402 431893 - 431450 - | DNA polymerase III subunit chi TERM 463 431491 - 431505 + g 71 -7.2 -3.90729 | CTCGGCCTGCATTTC GGTATA TTT TATACC TTTCTCGAGCTTGTT TERM 464 431949 - 431932 - R 90 -8.4 -5.1675 | opp_overlap 431932 GTACGTATTAAAAAA GGGCCT CAATAT AGGCCC TTTATATCATAAAAC TERM 465 431932 - 431949 + r 81 -8.4 -4.08706 | opp_overlap 431932 GTACGTATTAAAAAA GGGCCT CAATAT AGGCCC TTTATATCATAAAAC pepA 433481 - 431973 - | cytosol aminopeptidase TERM 466 434553 - 434563 + G 73 -6.8 -4.28361 | opp_overlap 434549 TCTGCCGTAAACCCT CGTC AGG GACG TTTTGCTAAACTTGG VFMJ11_0404 433749 - 434783 + | permease YjgP/YjgQ family protein VFMJ11_0405 434776 - 435852 + | permease YjgP/YjgQ family protein TERM 467 435895 - 435871 - T 100 -10.1 -5.38326 | opp_overlap 435871 TTAATCAAATAAAAA GGAGATGCATT AAA AATGTATCTCC TTTTTTGTATTTAAT TERM 468 435871 - 435895 + T 100 -12.3 -5.5762 | opp_overlap 435871 TTAATCAAATAAAAA GGAGATGCATT AAA AATGTATCTCC TTTTTTGTATTTAAT VFMJ11_0406 436389 - 435925 - | proline-rich antigen TERM 469 436437 - 436413 - R 77 -3.5 -5.42514 | CCATAAATTAAAAAA CTGACAGCAGT ATA ACGACTGTGAG GGAAAAAATGAAAAT TERM 470 436597 - 436611 + r 73 -8.6 -3.17392 | opp_overlap 436597 436594 AATTGGTATACACGA CGGATT CAA AATCCG TTGCCTTCGGGCGTG TERM 471 436692 - 436665 - R 77 -9.9 -2.9621 | opp_overlap 436665 436669, overlap 436669 ACCATATTTAAATGA CAAAGCCTCGA TGAAAG TCGGGGCTTTG TTGTATCTGGAGAAT TERM 472 436665 - 436692 + r 95 -12.8 -3.58905 | opp_overlap 436665 436669, overlap 436669 ACCATATTTAAATGA CAAAGCCTCGAT GAAA GTCGGGGCTTTG TTGTATCTGGAGAAT TERM 473 436669 - 436688 + r 81 -7.8 -4.42974 | opp_overlap 436669 436665, overlap 436665 TATTTAAATGACAAA GCCTCGAT GAAA GTCGGGGC TTTGTTGTATCTGGA TERM 474 436758 - 436739 - R 83 -7.8 -4.7254 | opp_overlap 436739 AGTTCTTATTAAAAA GCCCCAAC CGAA GTCAGGGC TCTAGTACCACTAGT VFMJ11_0408 437038 - 436781 - | hypothetical protein VFMJ11_0409 437458 - 437072 - | diacylglycerol kinase TERM 475 437559 - 437540 - R 100 -12.2 -5.73339 | opp_overlap 437540 ACAAGCATAAAAAAA GCCTCATC AGAT GATGAGGC TTTTTAATATGGCTC TERM 476 437540 - 437559 + r 100 -12.2 -4.81551 | opp_overlap 437540 ACAAGCATAAAAAAA GCCTCATC AGAT GATGAGGC TTTTTAATATGGCTC TERM 477 437684 - 437700 + r 72 -9.5 -2.62616 | opp_overlap 437686, overlap 437656 437686 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 478 437872 - 437856 - R 72 -5.9 -4.45544 | opp_overlap 437856, overlap 437850 CTTCAGTAACTAAAA CCTTGTT ATA AACAAAG CTTTAAAATGTGGCT TERM 479 438224 - 438240 + r 72 -9.5 -2.62616 | opp_overlap 438226, overlap 438196 438226 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 480 438429 - 438406 - R 81 -7.6 -4.30043 | gap 1, opp_overlap 438412 ATAAACTTAAAACAA CACCA-ACAAT CTT ATTGTATGGTG CCCGGAGGCGGAATC TERM 481 438458 - 438474 + r 72 -9.5 -2.62616 | opp_overlap 438460, overlap 438460 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA VFMJ11_0419 439746 - 438610 - | membrane-bound lytic murein transglycosylase C TERM 482 438923 - 438942 + g 86 -7.9 -4.89063 | opp_overlap 438922 438923 GGGTTAAATAGATAC TCAGGAG TTGGAT CTCCTGA TTTGTTTTTAACTAA TERM 483 439843 - 439818 - R 100 -13.5 -4.55023 | opp_overlap 439823 CTTAATAGCATAAAA TTAAAGCAGTC AAAT GACTGCTTTAA TGTAAAAGTGATTAT TERM 484 439823 - 439838 + r 79 -9 -3.83502 | opp_overlap 439818 TAGCATAAAATTAAA GCAGTC AAAT GACTGC TTTAATGTAAAAGTG VFMJ11_0420 440127 - 439855 - | putative Fe(2+)-trafficking protein mutY 441182 - 440130 - | A/G-specific adenine glycosylase TERM 485 440827 - 440816 - G 73 -5.8 -4.53707 | AAGAAAGTGATAAAA CAGC GCCG GCTG TTGAGCGACCAATAC trmB 441427 - 442143 + | tRNA (guanine-N(7)-)-methyltransferase TERM 486 442174 - 442191 + F 89 -7 -5.38249 | opp_overlap 442174 TACAACATAATTAAA GCCAAC CTGAGT GTTGGC TTTTTTGTCCTTGCT TERM 487 442191 - 442174 - f 75 -7 -4.09827 | opp_overlap 442174 TACAACATAATTAAA GCCAAC CTGAGT GTTGGC TTTTTTGTCCTTGCT VFMJ11_0423 442227 - 443147 + | thermolabile glutaminase (Glutaminase A) VFMJ11_0424 444614 - 443454 - | putative oxygen-independent coproporphyrinogen III oxidase rdgB 445214 - 444618 - | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family VFMJ11_0426 445656 - 445225 - | hypothetical protein TERM 488 445555 - 445576 + g 84 -2.3 -5.72622 | gap 1, opp_overlap 445555 AAATGTGGAATTGAA TGCCG-AGTA GTG TACTTCGACA TTTTTTATTTGTACA TERM 489 445712 - 445695 - R 90 -8.4 -5.36441 | opp_overlap 445694 445695, overlap 445678 CTTCCATATAAAAAA GCCGAG GGTTAA CTCGGC ATTAATCGTTATTTT VFMJ11_0427 446014 - 445727 - | hypothetical protein VFMJ11_0428 446576 - 446022 - | integral membrane protein proC 447443 - 446625 - | pyrroline-5-carboxylate reductase VFMJ11_0430 448236 - 447526 - | pyridoxal phosphate enzyme, YggS family TERM 490 448101 - 448122 + g 73 -2.3 -5.18643 | gap 1, overlap 448106 GGCCAGCTTCTATCG CTTGTTCGAG TAA CTCGA-TAGG TTTTGTTTTACTTAC VFMJ11_0431 448260 - 449297 + | twitching mobility protein VFMJ11_0432 449300 - 450406 + | pili retraction protein PilU TERM 491 450485 - 450451 - T 80 -10.3 -3.01125 | opp_overlap 450454, overlap 450448 450454 ACGCTCTAGAAACTA TAAGAGCAGTAAT ACGTAAATG ATTACTGCTCTTA ATATCTGCTTTTGAT TERM 492 450482 - 450454 - T 71 -7.6 -3.64915 | opp_overlap 450454, overlap 450451 450448 CTCTAGAAACTATAA GAGCAGTAAT ACGTAAATG ATTACTGCTC TTAATATCTGCTTTT VFMJ11_0433 450966 - 450541 - | hypothetical protein VFMJ11_0434 451526 - 450963 - | hypothetical protein TERM 493 451624 - 451601 - R 83 -10.4 -3.16921 | ACCAATTGGTATTAA TATTGAGGAG TTGC CCCCTCAATA CAGTTAGAATGTGAT gshB 452586 - 451639 - | glutathione synthase VFMJ11_0436 453331 - 452600 - | protein YggJ VFMJ11_0437 454109 - 453405 - | endonuclease-1 VFMJ11_0438 454701 - 454201 - | protein SprT TERM 494 454842 - 454813 - R 87 -10.9 -3.35597 | opp_overlap 454820, overlap 454798 454820 TTCATGCTGTAAACA TAAAAAAGGAAGC CGAA GCTTCCTTTTTAA ATTCAGAAATAAGTA TERM 495 454820 - 454835 + r 93 -9 -4.74103 | opp_overlap 454813 454820 TGTAAACATAAAAAA GGAAGC CGAA GCTTCC TTTTTAAATTCAGAA TERM 496 454835 - 454820 - R 95 -9 -5.56264 | opp_overlap 454820, overlap 454813 TGTAAACATAAAAAA GGAAGC CGAA GCTTCC TTTTTAAATTCAGAA metK 456020 - 454866 - | methionine adenosyltransferase TERM 497 456325 - 456344 + H 70 -8 -3.15249 | opp_overlap 456324 CACCTGCAAATTTAG GTTAATCA ATAG TGATTAAC TTGCTCAACAATATA TERM 498 457873 - 457845 - g 73 -8.1 -3.92592 | opp_overlap 457845, overlap 457847 ACGTTTAACACCAAA CATGAGCACATGG CGT CCATGTGACCAAG TTGAATCTGCTGTAG TERM 499 457871 - 457847 - g 74 -9.3 -3.55084 | opp_overlap 457845, overlap 457845 GTTTAACACCAAACA TGAGCACATGG CGT CCATGTGACCA AGTTGAATCTGCTGT tkt_1 456385 - 458379 + | transketolase TERM 500 458429 - 458454 + F 100 -9.1 -5.243 | opp_overlap 458427 458429 458449 AAAATAAGATGAAGA GCGAAGTTATT GAAA GGTAACTTCGC TTTTTTGATCCTTTA epd 458525 - 459544 + | D-erythrose-4-phosphate dehydrogenase pgk 459711 - 460874 + | phosphoglycerate kinase TERM 501 460885 - 460906 + F 100 -10.2 -4.86939 | opp_overlap 460883 460885 CATAATTATTTAAGA GCGGGAAT CTAATC ATTCCCGC TTTTTACGTTTGTTG TERM 502 460906 - 460885 - f 80 -10.2 -3.13309 | opp_overlap 460885, overlap 460883 CATAATTATTTAAGA GCGGGAAT CTAATC ATTCCCGC TTTTTACGTTTGTTG fbaA 461030 - 462106 + | fructose-bisphosphate aldolase, class II TERM 503 462145 - 462160 + T 78 -2.4 -5.65177 | opp_overlap 462138 462146, overlap 462146 TGAGTTAATAAAAAA ACCGCT GATT GGCGGG TTTTTTTATGCCTGT TERM 504 462159 - 462146 - T 91 -5.2 -5.8187 | opp_overlap 462146 462145, overlap 462138 GAGTTAATAAAAAAA CCGC TGATTG GCGG GTTTTTTTATGCCTG TERM 505 462276 - 462306 + T 77 -9.8 -3.00946 | opp_overlap 462281, overlap 462281 AAGTGACTTCTAATA AAAAAGCAGCCTGT AAT ACAGACTGCTTTTA TCGTTTCTAGAGCGA TERM 506 462301 - 462281 - T 100 -11.9 -5.45652 | opp_overlap 462276 462281 ACTTCTAATAAAAAA GCAGCCTGT AAT ACAGACTGC TTTTATCGTTTCTAG TERM 507 462281 - 462301 + T 100 -9.7 -4.64846 | opp_overlap 462281, overlap 462276 ACTTCTAATAAAAAA GCAGCCTGT AAT ACAGACTGC TTTTATCGTTTCTAG VFMJ11_0444 463592 - 462351 - | ATP-dependent RNA helicase SrmB VFMJ11_0445 464385 - 463681 - | methyltransferase TERM 508 463829 - 463839 + g 72 -3.2 -5.10656 | GGTGATTTTTTTTCA GTGG TTT TCAC TTTTGTTATTTTGGT brnQ_1 464675 - 465988 + | branched-chain amino acid transport system II carrier protein TERM 509 466063 - 466032 - T 75 -8.9 -3.50893 | gap 1, opp_overlap 466032 AATTAGAGACTATAA GAGCGAGTATAACT GTTTA AGTT-CACTCGCTC TTTTCTTTTATAGTA TERM 510 466032 - 466063 + T 84 -6.7 -5.20781 | gap 1, opp_overlap 466032 AATTAGAGACTATAA GAGCGAGTATAACT GTTTA AGTTC-ACTCGCTC TTTTCTTTTATAGTA VFMJ11_0447 466636 - 466118 - | flavodoxin xerD 466782 - 467678 + | tyrosine recombinase XerD VFMJ11_0449 467753 - 468529 + | thiol:disulfide interchange protein DsbC TERM 511 468570 - 468553 - f 72 -8.4 -3.42699 | opp_overlap 468553 AGCTATTCATTATAA TCCCCG TGTATG CGGGGA TTTTTTTATTGAAAA TERM 512 468553 - 468570 + F 100 -9.1 -5.7946 | opp_overlap 468553 AGCTATTCATTATAA TCCCCGT GTAT GCGGGGA TTTTTTTATTGAAAA TERM 513 468715 - 468699 - g 71 -9.5 -2.82987 | opp_overlap 468712, overlap 468703 GCAAGAGGTATTACA TCAAGCT CAC AGCTTGA GCGTGGCGCAAAATT recJ 468600 - 470339 + | single-stranded-DNA-specific exonuclease RecJ TERM 514 470376 - 470410 + F 88 -7.4 -5.05228 | opp_overlap 470379 470382, overlap 470379 ACGTTAATTTTCACT GAACAACTCATTAA AAAAGAC TTAATGAGTTGTTA TTTTTATGGTTTAGT TERM 515 470407 - 470379 - f 77 -9.8 -3.06831 | opp_overlap 470376 470379, overlap 470382 TTAATTTTCACTGAA CAACTCATTAAA AAAGA CTTAATGAGTTG TTATTTTTATGGTTT TERM 516 470379 - 470407 + F 93 -9.1 -4.59919 | opp_overlap 470379 470382, overlap 470376 TTAATTTTCACTGAA CAACTCATTAA AAAAGAC TTAATGAGTTG TTATTTTTATGGTTT TERM 517 470477 - 470498 + F 71 -5.2 -4.48877 | AAATAAAAAACGTTT TGGTGTGA TGTTTT TTACACCA TTTTCTCAATCTTTA VFMJ11_0451 470961 - 471707 + | peptide chain release factor 2 lysS 471721 - 473226 + | lysyl-tRNA synthetase TERM 518 473281 - 473242 - f 72 -5 -4.82212 | opp_overlap 473252, overlap 473244 473252 TAAAGAATAAATAAA GATGATGAAAGAGCGGCT AAAT AGCCGCTCTTTTTTTATT TATCTTACTCAAAGC TERM 519 473279 - 473244 - f 76 -7.6 -3.98538 | opp_overlap 473252, overlap 473242 473252 AAGAATAAATAAAGA TGATGAAAGAGCGGCT AAAT AGCCGCTCTTTTTTTA TTTATCTTACTCAAA TERM 520 473271 - 473252 - f 100 -13.6 -3.87438 | opp_overlap 473252, overlap 473244 473242 ATAAAGATGATGAAA GAGCGGCT AAAT AGCCGCTC TTTTTTTATTTATCT TERM 521 473252 - 473271 + F 100 -13.6 -6.04953 | opp_overlap 473252 473244 473242 ATAAAGATGATGAAA GAGCGGCT AAAT AGCCGCTC TTTTTTTATTTATCT VFMJ11_0453 473614 - 474951 + | transcriptional regulator TERM 522 474972 - 474999 + T 100 -10.7 -5.47218 | opp_overlap 474972 CTTTTGATTGAAAAA TAGGCTTACCT TGCATT AGGTAGGCCTA TTTTTTTAGCTGAAG TERM 523 474999 - 474972 - T 93 -8.5 -4.65895 | opp_overlap 474972 CTTTTGATTGAAAAA TAGGCTTACCT TGCATT AGGTAGGCCTA TTTTTTTAGCTGAAG mutH 475673 - 475005 - | DNA mismatch repair endonuclease MutH TERM 524 476573 - 476559 - g 79 -5.8 -4.85599 | TGTATCGGACAAAAA CAAAAA TGG TTTTTG TTACGCTTAGAATGT VFMJ11_0455 476271 - 476783 + | (Di)nucleoside polyphosphate hydrolase (Ap5Apyrophosphatase) ptsP_1 476822 - 479083 + | phosphoenolpyruvate-protein phosphotransferase VFMJ11_0457 479089 - 479886 + | thymidylate synthase TERM 525 480631 - 480650 + G 76 -7.2 -4.27441 | overlap 480628 GGACAAATTTTGTCA CTACCAAT GGTG ATTGGTGG TTTGTTAATGATGCT lgt 479899 - 480750 + | prolipoprotein diacylglyceryl transferase TERM 526 480783 - 480802 + F 100 -9.3 -5.49729 | opp_overlap 480783 GATGATTTATAGTAA TGGCCTC TCGTTT GAGGCCA TTTTTTTAACTAATT TERM 527 480802 - 480783 - f 77 -9.3 -3.28416 | opp_overlap 480783 GATGATTTATAGTAA TGGCCTC TCGTTT GAGGCCA TTTTTTTAACTAATT thyA 480834 - 481685 + | thymidylate synthase TERM 528 481712 - 481734 + T 100 -9.1 -5.95539 | opp_overlap 481712 AGATATAATAAAAAA GCCCCGAAG CATAA CTTCGCGGC TTTTTTTATTTGGAA TERM 529 481734 - 481712 - T 100 -9.8 -5.62045 | opp_overlap 481712 AGATATAATAAAAAA GCCCCGAAGC ATA ACTTCGCGGC TTTTTTTATTTGGAA VFMJ11_0460 482903 - 481758 - | sodium-dependent phosphate transporter VFMJ11_0461 483319 - 484209 + | transcriptional activator protein NhaR (Na+/H+ antiporter regulatory protein) VFMJ11_0462 484273 - 484569 + | nodulation protein NolR TERM 530 484649 - 484676 + T 93 -10 -4.09117 | opp_overlap 484648 484656, overlap 484656 TCAAATTGCAGATAT AAAAAAACCGAC CTAA GTCGGTTTTTTC TTATTTCTAACTGAG TERM 531 484656 - 484669 + T 93 -8.1 -5.74288 | opp_overlap 484648 484656, overlap 484649 GCAGATATAAAAAAA CCGAC CTAA GTCGG TTTTTTCTTATTTCT TERM 532 484669 - 484656 - T 93 -8.1 -5.76633 | opp_overlap 484656 484649, overlap 484648 GCAGATATAAAAAAA CCGAC CTAA GTCGG TTTTTTCTTATTTCT rpsT 484965 - 484705 - | ribosomal protein S20 TERM 533 484799 - 484833 + g 84 -10.1 -3.86822 | overlap 484802 ATGCGGTCTAGAAGT GGAGTTGCAGTTGCT AGTGC AGCAGTTGCAGCTTC TTTATCGCCAGCTTC TERM 534 484802 - 484830 + g 75 -8.2 -4.06419 | overlap 484799 CGGTCTAGAAGTGGA GTTGCAGTTGCT AGTGC AGCAGTTGCAGC TTCTTTATCGCCAGC TERM 535 484835 - 484862 + g 93 -5.7 -5.58454 | gap 1, overlap 484836 GCAGTTGCAGCTTCT TTATCGCCAGCT TCGAT AGCTG-CGATAG TTTTTTTCATGTAAG TERM 536 485300 - 485311 + G 74 -4.4 -5.00196 | TTATGGGAGCAGGAG CATC GGCT GATG TTTTCTTCTTTGCAA mviN 485287 - 486747 + | integral membrane protein MviN ribF 486838 - 487770 + | riboflavin biosynthesis protein RibF TERM 537 488895 - 488878 - g 77 -4.9 -5.00616 | overlap 488880 GTGGTTGGTAAAAAA TACGATT TAGA AATCGCA AACCCAGTTGGTTCA TERM 538 489016 - 489001 - g 79 -3.2 -5.50723 | overlap 489003 GTACTAAAAGAAAAA GGTGCA TTAC TGCATC ATCACGCGTACGAGC TERM 539 489557 - 489506 - g 71 -5.2 -4.51812 | gap 1, opp_overlap 489510 489511 489513, overlap 489509 489510 489511 489513 TCCCAGAAGAAGAAA GAACGCACAGTGCAGATCTTTACCT AGA AGGTTCAGATCAACACCGTG-GTTG GTTCCAATCGTCGTT TERM 540 489554 - 489509 - g 76 -6.9 -4.35992 | gap 1, opp_overlap 489510 489511 489513, overlap 489506 489510 489511 489513 CAGAAGAAGAAAGAA CGCACAGTGCAGATCTTTACCT AGA AGGTTCAGATCAACACCGTG-G TTGGTTCCAATCGTC TERM 541 489553 - 489511 - g 76 -10.6 -2.50354 | opp_overlap 489511 489510 489513, overlap 489509 489510 489506 489513 GAAGAAGAAAGAACG CACAGTGCAGATCTTTACCT AGA AGGTTCAGATCAACACCGTG GTTGGTTCCAATCGT ileS 487807 - 490665 + | isoleucyl-tRNA synthetase TERM 542 490707 - 490736 + G 70 -9.9 -2.70946 | opp_overlap 490707, overlap 490706 490705 490709 CTGCTTAAAGAATCA GGACTCCGCTGGC TATG GCTAGCGGGGATC ATCTTTATGGCAGAC TERM 543 491053 - 491065 + G 72 -3.4 -5.08601 | TTCATGGTTTCGTTG TCGA TTATC TCGA TTTTTATTGGGGTAA lspA 490665 - 491180 + | signal peptidase II TERM 544 491205 - 491228 + F 95 -8.8 -5.75342 | opp_overlap 491201 491205 AGCATAATCAATGAA CGCTACCCGA GCAG TCGAGTGGCG TTTTTTTTCAAGGAA TERM 545 491228 - 491205 - f 75 -8.8 -3.48466 | opp_overlap 491205, overlap 491201 AGCATAATCAATGAA CGCTACCCGA GCAG TCGAGTGGCG TTTTTTTTCAAGGAA VFMJ11_0468 491252 - 491680 + | fkbp-type 16 kda peptidyl-prolyl cis-trans isomerase TERM 546 492323 - 492310 - g 74 -5.2 -4.68724 | TTATGCAACACAAAA CCGC CAAGAT GCGG TGCGTGATATGGCAA ispH 491705 - 492649 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase dapB 492722 - 493531 + | dihydrodipicolinate reductase TERM 547 493564 - 493542 - f 100 -16.4 -3.25015 | opp_overlap 493542 493561 TTTAATTATTACTAA GCCCGAATCA ATG TGATTCGGGC TTTTTTTTAACTAAA TERM 548 493542 - 493564 + F 100 -16.4 -5.81412 | opp_overlap 493542, overlap 493561 TTTAATTATTACTAA GCCCGAATCA ATG TGATTCGGGC TTTTTTTTAACTAAA TERM 549 493877 - 493855 - g 77 -6.4 -4.60889 | opp_overlap 493858, overlap 493842 AATCATTCTGAAAAA TGATTTTTTG ATG CAAAAACTCA TTAAGAGCAAAAAAG VFMJ11_0471 493829 - 493945 + | hypothetical protein TERM 550 494036 - 494050 + F 72 -2.8 -5.2696 | overlap 494028 CAATTTGTCAAAAAT CGAGCT TGT AGTTTG TTTTTTGGGTTTTAA carA 494126 - 495283 + | carbamoyl-phosphate synthase, small subunit carB 495301 - 498531 + | carbamoyl-phosphate synthase, large subunit TERM 551 498578 - 498603 + T 100 -12.7 -5.4387 | opp_overlap 498578 AAGTAATAATAAAAA TCCCGAAGAAT GAGA GTTCTTCGGGA TTTTTTGGTTTATAT TERM 552 498603 - 498578 - T 100 -12 -5.3321 | opp_overlap 498578 AAGTAATAATAAAAA TCCCGAAGAA TGAGAG TTCTTCGGGA TTTTTTGGTTTATAT dacB 500087 - 498681 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 553 500202 - 500185 - R 100 -9.1 -5.72622 | opp_overlap 500185 500184 GTCACAAATAAAAAA CGCCCAC CGAG GTGAGCG CTTTATTTAAGTAAG VFMJ11_0475 501198 - 500230 - | OmpU, outer membrane protein TERM 554 501933 - 501915 - g 74 -3.8 -5.10933 | overlap 501924 TGATTTAAAAGAAAA TGCTGAAT ATC ACGCAGCA CGTGAAGAGCAAGGT VFMJ11_0476 501784 - 502257 + | transcription elongation factor GreA TERM 555 502325 - 502284 - T 100 -11.1 -4.36903 | gap 1, opp_overlap 502284 TGTATGAAACACAAA GGCCGCA-TAGTTAACTCTA CTA TAAAGATAACTACTACGGCC TTTTTAATTTCTTTA TERM 556 502284 - 502325 + T 84 -6.7 -5.13137 | gap 1, opp_overlap 502284 TGTATGAAACACAAA GGCCGCA-TAGTTAACTCTA CTA TAAAGATAACTACTACGGCC TTTTTAATTTCTTTA VFMJ11_0477 502653 - 502357 - | hypothetical protein TERM 557 502610 - 502630 + g 79 -8.3 -4.05091 | GGTTTTAGGTTGTGA GCAAGACCT TTA AGGTATTGC TTCTGTTTTGTGCTT TERM 558 503343 - 503331 - g 71 -4.1 -4.84363 | opp_overlap 503331 TCAAAGTAGTAAAAA TCAGA AAG CCTGA TTCATCACGTGCTCG rrmJ 502772 - 503401 + | ribosomal RNA large subunit methyltransferase J ftsH 503487 - 505460 + | ATP-dependent metallopeptidase HflB TERM 559 505448 - 505436 - f 80 -2.7 -5.68438 | overlap 505437 TGATGAAACAAAAAA CGATT CTG AATCA TCTGAAAAATAAGAT TERM 560 505505 - 505477 - f 81 -7.4 -4.28323 | opp_overlap 505482, overlap 505482 ATGAAGTAAGATAAA TTAAACCCCGAG TTATG CTCGGGGTTTTT GTATTTATTAAAGGT TERM 561 505500 - 505482 - f 100 -11.7 -4.21322 | opp_overlap 505482, overlap 505477 GTAAGATAAATTAAA CCCCGAG TTATG CTCGGGG TTTTTGTATTTATTA TERM 562 505482 - 505500 + F 100 -12.4 -5.28414 | opp_overlap 505477 505482 GTAAGATAAATTAAA CCCCGAGT TAT GCTCGGGG TTTTTGTATTTATTA folP 505529 - 506365 + | dihydropteroate synthase glmM 506414 - 507751 + | phosphoglucosamine mutase VFMJ11_0482 507903 - 508235 + | translocase TERM 563 508562 - 508547 - f 75 -8.2 -3.80573 | opp_overlap 508547 TCCAGCAGTATTAAA CCCCGC AATT ACGGGG TTTTTTGCTATCTGA TERM 564 508547 - 508562 + F 89 -7.5 -5.24989 | opp_overlap 508547 TCCAGCAGTATTAAA CCCCG CAATTA CGGGG TTTTTTGCTATCTGA TERM 565 508600 - 508612 + F 95 -6.2 -6.09196 | opp_overlap 508599 TGTTTTTTAAGAATT GGGC CTTGA GCCC TTTTTTTGTTTTCAG VFMJ11_0485 508637 - 509092 + | protein VV1_1694 TERM 566 509325 - 509310 - g 70 -5.4 -4.46212 | overlap 509319 GGTTGCAGTAGAAAA CGTTGA AAAT CCAACG CTTGAAATTTCTATT TERM 567 510166 - 510150 - g 70 -2.9 -5.08601 | TGATCTTAACAAAAA GCACC AAGAAGA GGCGC AAGGTTCTATTGATG nusA 509110 - 510597 + | transcription termination factor NusA TERM 568 511201 - 511171 - g 73 -2.4 -5.2166 | overlap 511174 511175 GAACAAGCGAAAAAA GAAGCTGATGAGCT TAA AGCTCGTCAGGAAC TAGAAGCGACTCGTA TERM 569 511198 - 511174 - g 83 -7.1 -4.67173 | overlap 511171 511175 CAAGCGAAAAAAGAA GCTGATGAGCT TAA AGCTCGTCAGG AACTAGAAGCGACTC TERM 570 511197 - 511175 - g 80 -10.6 -3.38677 | overlap 511174 511171 AAGCGAAAAAAGAAG CTGATGAGCT TAA AGCTCGTCAG GAACTAGAAGCGACT TERM 571 511319 - 511309 - g 70 -5.4 -4.39277 | GAAGAGCAGAAGAAA TCAG CAG CTGA AAAAGATGCAGATTA TERM 572 511445 - 511429 - g 82 -6.5 -4.9251 | overlap 511430 AAGAAAAAAGCAAAA CCAGCAG AAG CTGCTGC TCCTCGTGGTGGTCG TERM 573 511444 - 511430 - g 79 -10 -3.51846 | overlap 511429 AGAAAAAAGCAAAAC CAGCAG AAG CTGCTG CTCCTCGTGGTGGTC TERM 574 512177 - 512166 - g 72 -4.4 -4.69622 | AGATAACGTTAAAAA TGAG CTTG CTCA ATATGACGTTATTCC TERM 575 512673 - 512658 - g 71 -6.2 -4.1466 | AGCTAAGCTTGAAAA CATGTT TGCT AACATG GAAGCGGGTGAAGTT TERM 576 512842 - 512822 - g 73 -8.3 -3.68351 | opp_overlap 512834 GTGGTATTACTGAAA CTGATGCAA CTC TTGCAGCAG CGTCTAATGCAATCA VFMJ11_0487 510622 - 513303 + | translation initiation factor IF-2 TERM 577 513397 - 513363 - f 74 -9.3 -3.06696 | gap 1, opp_overlap 513364 513366, overlap 513366 CGGTTGTTGAATACA CCATGGGGGGC-TGGT AATT ACCAAGCCCCCCATCT TTCTAAGAGAGAAAA TERM 578 513364 - 513396 + F 95 -12.8 -3.85698 | gap 1, opp_overlap 513363 513366, overlap 513366 GGTTGTTGAATACAC CATGGGGGGC-TGGT AATT ACCAAGCCCCCCATC TTTCTAAGAGAGAAA TERM 579 513366 - 513394 + F 100 -15.4 -3.51934 | gap 1, opp_overlap 513363 513366, overlap 513364 TTGTTGAATACACCA TGGGGGGC-TGGT AATT ACCAAGCCCCCCA TCTTTCTAAGAGAGA TERM 580 513394 - 513366 - f 100 -15.4 -2.7535 | gap 1, opp_overlap 513366 513364, overlap 513363 TTGTTGAATACACCA TGGGGGGC-TGGT AATT ACCAAGCCCCCCA TCTTTCTAAGAGAGA rbfA 513416 - 513823 + | ribosome-binding factor A VFMJ11_0489 513823 - 514773 + | tRNA pseudouridine synthase B TERM 581 514826 - 514802 - f 78 -7.2 -4.45253 | opp_overlap 514802 TCAAAAGAATAGAAA GAGCAAAAGC TGTTG GTTTTTGCTC TTTTTTTATTGCTTT TERM 582 514802 - 514826 + F 100 -10.1 -5.9003 | opp_overlap 514802 TCAAAAGAATAGAAA GAGCAAAAGCT GTT GGTTTTTGCTC TTTTTTTATTGCTTT rpsO 514936 - 515205 + | ribosomal protein S15 TERM 583 515239 - 515255 + F 86 -5.1 -5.69473 | opp_overlap 515239 ACAGTTTGACGAAAA GGAGC ATTTATC GCTCC TTTTTTTATGCTCTA TERM 584 515407 - 515457 + F 100 -18.6 -3.28003 | overlap 515423 AAGTCGGCCACTAGG TCGCGGCTATTACAAATTGTCTTT AGT GAAGTCAATTTGTACTAGTCGCGA TTAGTAGTATGTTGA TERM 585 517648 - 517620 - g 71 -6.7 -4.04927 | overlap 517625 517637 517638 517641 CTAAGTATTAAAGAA GCAAATGCTGAAC TAA ACCCAGCACCTGC TGCTGAAGCAAAAGA pnp 515544 - 517673 + | polyribonucleotide nucleotidyltransferase TERM 586 517732 - 517715 - f 93 -11.3 -3.91434 | opp_overlap 517715 517731 AAAGCATGTTATAAA GGGAGCA GAAA TGCTCCC TTTTCTTTTAATATA TERM 587 517715 - 517732 + F 100 -11.3 -5.16132 | opp_overlap 517715, overlap 517731 AAAGCATGTTATAAA GGGAGCA GAAA TGCTCCC TTTTCTTTTAATATA VFMJ11_0492 517794 - 518777 + | lipoprotein NlpI TERM 588 518803 - 518824 + T 100 -9.5 -5.47159 | opp_overlap 518803 TAGTATAATAAAAAA GCCTTATTC ATAT GGATAAGGC TTTTTTGTATTCAAA TERM 589 518824 - 518803 - T 93 -7.3 -5.58179 | opp_overlap 518803 TAGTATAATAAAAAA GCCTTATTC ATAT GGATAAGGC TTTTTTGTATTCAAA VFMJ11_0493 519731 - 518853 - | collagenase VFMJ11_0494 520742 - 519741 - | STM-proteaseA TERM 590 520594 - 520605 + g 72 -4.4 -4.70659 | TGAACATATTGCACA GCTT TCTC AAGC TTTTTACCTGTAAAG TERM 591 520684 - 520699 + g 89 -9 -4.72272 | TAAACAGCATCGGCA CCGCAA TCAA TTGCGG TTTTTAGTGCGGGCA VFMJ11_0495 522987 - 520960 - | sensory transduction protein kinase TERM 592 522362 - 522390 + g 73 -8.3 -3.62046 | overlap 522365 TCGGCACGCAGAGAG CAATTAGCGGTAG TTC TTACTGTTAATTG TTGTTCAGAAGGTAA VFMJ11_0496 523195 - 523713 + | sterol binding protein VFMJ11_0497 523703 - 524206 + | acetyltransferase, gnat family TERM 593 524216 - 524245 + T 90 -8 -5.16071 | opp_overlap 524218, overlap 524218 TTATAAATAGACGAA AAGAATGCTCAT CTTGCT ATGAGCATTCTA TTTTTATTGGTCGTT TERM 594 524243 - 524218 - T 100 -10.6 -4.47397 | opp_overlap 524216 524218 ATAAATAGACGAAAA GAATGCTCAT CTTGCT ATGAGCATTC TATTTTTATTGGTCG TERM 595 524218 - 524243 + T 100 -10.6 -4.19587 | opp_overlap 524218, overlap 524216 ATAAATAGACGAAAA GAATGCTCAT CTTGCT ATGAGCATTC TATTTTTATTGGTCG VFMJ11_0498 524726 - 524259 - | hypothetical protein TERM 596 525136 - 525149 + G 80 -8.1 -4.36862 | overlap 525133 CGAGTATGAAGCTGT CGCCT GAGC AGGCG TTATTTCTTTCCTCT VFMJ11_0499 524937 - 525338 + | DNA polymerase III, psi subunit TERM 597 525357 - 525341 - g 73 -5.9 -4.51174 | opp_overlap 525341 525350 525352, overlap 525336 TTATGACAATTAAAA TTCAAAC AAC GTCTGAA TCTCATTTAGATGAT TERM 598 525629 - 525619 - g 85 -6.8 -5.10461 | TGTATGGAACAAAAA GCTG AAT CAGC ATGGCTCGAAGTGCG rimI 525328 - 525774 + | ribosomal-protein-alanine acetyltransferase prfC 525871 - 527451 + | peptide chain release factor 3 TERM 599 527470 - 527505 + F 80 -10.6 -2.96692 | opp_overlap 527472 527478, overlap 527478 GTTGCTTATCAAATA AATAAAAACGGAGTCT TAAC GGACTCCGTTTTTGTA TCTATAGTAATACTA TERM 600 527503 - 527472 - f 100 -10.3 -4.49556 | opp_overlap 527470 527478, overlap 527478 TGCTTATCAAATAAA TAAAAACGGAGTC TTAACG GACTCCGTTTTTG TATCTATAGTAATAC TERM 601 527478 - 527497 + F 100 -10 -5.07275 | opp_overlap 527472 527478, overlap 527470 TCAAATAAATAAAAA CGGAGTCT TAAC GGACTCCG TTTTTGTATCTATAG TERM 602 527497 - 527478 - f 100 -9.3 -5.5454 | opp_overlap 527478 527470, overlap 527472 TCAAATAAATAAAAA CGGAGTC TTAACG GACTCCG TTTTTGTATCTATAG VFMJ11_0502 527593 - 527706 + | hypothetical protein TERM 603 528284 - 528272 - g 84 -7.7 -4.77986 | opp_overlap 528271 528272 CGAAAGAGCTAAAAA GACCA AAA TGGTC ATTTCACAGCTGCCT VFMJ11_0503 527706 - 528482 + | hydrolase, TatD family TERM 604 528714 - 528735 + G 73 -7.3 -4.11183 | TTGGTTGGGATCGTG GTACTGCTA GGTA TAGCTGTAC TTCTTTCTGATAACC TERM 605 529773 - 529785 + G 74 -6.3 -4.38927 | TCATTCGCACTATGT GGTTT CGC AAACC TTTCTTCTGTAGCGA VFMJ11_0504 528681 - 529937 + | nucleoside permease NupC TERM 606 529961 - 529997 + F 84 -11.7 -3.14693 | opp_overlap 529961 529971, overlap 529971 AGCAGAACAGATAAT CATTATAAAACCCGCAT TAT GTGCGGGTTTTTTTATG TCTGTTGCTCATGAA TERM 607 529997 - 529961 - f 81 -11 -2.83593 | opp_overlap 529961 529971, overlap 529971 AGCAGAACAGATAAT CATTATAAAACCCGCA TTATG TGCGGGTTTTTTTATG TCTGTTGCTCATGAA TERM 608 529971 - 529987 + F 100 -10.1 -5.77988 | opp_overlap 529961 529971, overlap 529961 ATAATCATTATAAAA CCCGCAT TAT GTGCGGG TTTTTTTATGTCTGT TERM 609 529987 - 529971 - f 93 -9.4 -4.51699 | opp_overlap 529971 529961, overlap 529961 ATAATCATTATAAAA CCCGCA TTATG TGCGGG TTTTTTTATGTCTGT TERM 610 530074 - 530060 - f 70 -4.3 -4.65895 | TTTTTTATGCAAAAA GTTTG AGATG CAAAC CGATTGCGTTACCAC VFMJ11_0505 530223 - 530393 + | XapX domain, putative deoC 530670 - 531446 + | deoxyribose-phosphate aldolase TERM 611 531518 - 531481 - f 70 -4.1 -4.69214 | overlap 531483 TAGCTAAGAAATAAA TCGACTTAGGTGAGACA TACT CGTCTCGCCTACCTCAA CCCTACCTATTTTAA deoA 531562 - 532893 + | thymidine phosphorylase TERM 612 533223 - 533234 + G 79 -5.8 -4.99947 | GCCACTGGGAAATTG CAGG TGTA CCTG TTTTATTTGATTGGG TERM 613 533524 - 533545 + G 71 -6.5 -4.2461 | opp_overlap 533523 533524 TGAAGATTACAATAT TGGTCGAGT GATC GCTCGTCCA TTTATTGGTCCAGGT deoB 532904 - 534124 + | phosphopentomutase TERM 614 534159 - 534132 - f 100 -11.4 -4.96501 | opp_overlap 534135, overlap 534135 TCCTATAAAAATAAA TAAGCAGTAGAG TTTT CTCTACTGCTTT TTTTCTATTTTAAGT TERM 615 534156 - 534135 - f 100 -13.1 -4.56117 | opp_overlap 534135, overlap 534132 TATAAAAATAAATAA GCAGTAGAG TTTT CTCTACTGC TTTTTTTCTATTTTA TERM 616 534135 - 534156 + F 100 -13.1 -5.9362 | opp_overlap 534135 534132 TATAAAAATAAATAA GCAGTAGAG TTTT CTCTACTGC TTTTTTTCTATTTTA deoD_1 534195 - 534911 + | purine nucleoside phosphorylase TERM 617 534940 - 534971 + T 100 -11 -5.04325 | opp_overlap 534944, overlap 534944 AACCGTTAGAAATAA AAAAGGCGATGAGA TTAA TTTCATCGCCTTTC TTTTTATGCTTTACC TERM 618 534967 - 534944 - T 100 -9.6 -5.72622 | opp_overlap 534940 534944 GTTAGAAATAAAAAA GGCGATGAGA TTAA TTTCATCGCC TTTCTTTTTATGCTT TERM 619 534944 - 534967 + T 100 -11.8 -5.00267 | opp_overlap 534944, overlap 534940 GTTAGAAATAAAAAA GGCGATGAGA TTAA TTTCATCGCC TTTCTTTTTATGCTT VFMJ11_0510 535571 - 534975 - | SMP protein VFMJ11_0511 535706 - 536674 + | phosphoserine phosphatase TERM 620 536708 - 536728 + F 100 -11.3 -5.81412 | opp_overlap 536708 ATCTAAGATAAAAAA TGAGCTTTA TTA TAAAGCTCA TTTTTTTTGCGTAAA TERM 621 536728 - 536708 - f 100 -11.3 -5.48063 | opp_overlap 536708 ATCTAAGATAAAAAA TGAGCTTTA TTA TAAAGCTCA TTTTTTTTGCGTAAA VFMJ11_0512 536935 - 537159 + | hypothetical protein TERM 622 537292 - 537333 + G 70 -7.7 -3.7645 | gap 1, overlap 537289 537300 GATTTTTTTCTATCT TTGTTAAAGGTGAT-ATGAG TCA TTTATTATCACCTTTAATAA TTCTCTTCGTTGGAT VFMJ11_0513 537267 - 537596 + | hypothetical protein cpaB_1 537604 - 538416 + | Flp pilus assembly protein CpaB VFMJ11_0515 538420 - 539730 + | general secretion pathway protein D VFMJ11_0516 539727 - 540197 + | lipoprotein, putative VFMJ11_0517 540247 - 541485 + | ATPase involved in chromosome partitioning VFMJ11_0518 541492 - 542778 + | TadA VFMJ11_0519 542781 - 543698 + | Flp pilus assembly protein TadB VFMJ11_0520 543698 - 544570 + | bipartite nuclear localization signal containing protein VFMJ11_0521 544563 - 545303 + | TPR-repeat secretory protein VFMJ11_0522 545312 - 545797 + | hypothetical protein TERM 623 546031 - 546020 - gf 73 -2.2 -5.27399 | overlap 546008 TAAGATAGCAAAAAA CTCG CTTT CAAG AACGTTTGGTAATTT VFMJ11_0523 545772 - 546320 + | ATP/GTP-binding site motif A VFMJ11_0524 546323 - 547714 + | hypothetical protein VFMJ11_0525 547730 - 548389 + | outer membrane protein TERM 624 548402 - 548435 + T 100 -9.7 -4.50627 | gap 1, opp_overlap 548402 TGATAGCTAAAGATA GGCGGTGTTATTAACG AAA CGTTGG-AATACCGCC TTTGTTTGCTAAATA VFMJ11_0526 549280 - 548444 - | sensor protein PhoQ VFMJ11_0527 550756 - 549413 - | sensor protein PhoQ TERM 625 549525 - 549536 + g 76 -7.2 -4.29302 | ACCGCAAGTCCAATC CCCG TTCC CGGG TTCTTTTCATCTGCG VFMJ11_0528 551439 - 550759 - | transcriptional regulatory protein PhoP TERM 626 551003 - 551018 + g 72 -3.2 -5.15526 | AATTGTAGAAATTGA CCGTCT ACAT GGATGG TTTTTGCTTTTATAT TERM 627 551535 - 551504 - R 95 -13.3 -3.53224 | opp_overlap 551507 551511, overlap 551507 551511 CATTTTGTTTTTAAA TAATAAAGCCCAT GAATTG ATGGGCTTTATTA AATTTAATTCACCTC TERM 628 551532 - 551507 - R 93 -10.6 -3.90744 | opp_overlap 551507 551511, overlap 551504 551511 TTTGTTTTTAAATAA TAAAGCCCAT GAATTG ATGGGCTTTA TTAAATTTAATTCAC TERM 629 551507 - 551532 + r 83 -10.6 -3.33399 | opp_overlap 551507 551504 551511, overlap 551511 TTTGTTTTTAAATAA TAAAGCCCAT GAATTG ATGGGCTTTA TTAAATTTAATTCAC TERM 630 551528 - 551511 - R 80 -7 -4.56978 | opp_overlap 551507 551511, overlap 551507 551504 TTTTTAAATAATAAA GCCCAT GAATTG ATGGGC TTTATTAAATTTAAT TERM 631 551511 - 551528 + r 78 -7 -4.29929 | opp_overlap 551511 551507 551504, overlap 551507 TTTTTAAATAATAAA GCCCAT GAATTG ATGGGC TTTATTAAATTTAAT VFMJ11_0529 553898 - 551553 - | type IV pilus assembly protein PilZ TERM 632 552187 - 552211 + g 93 -12.3 -3.9226 | opp_overlap 552187 552192 TGCTGTATTAATCGA CTCAAGAAAGC CTT GCTTTTTTGAG TTTGTAAACTGTCTT TERM 633 552211 - 552187 - G 72 -10.1 -2.56596 | opp_overlap 552187, overlap 552192 TGCTGTATTAATCGA CTCAAGAAAGC CTT GCTTTTTTGAG TTTGTAAACTGTCTT TERM 634 554432 - 554452 + G 70 -9.7 -2.71924 | opp_overlap 554435 554436, overlap 554431 CGTTACAGCAGGTAG CAATGCGAG CTT CTCGCCTTG GTTTGCCAAAAGATA radA 554020 - 555402 + | DNA repair protein RadA fusA_1 555598 - 557685 + | translation elongation factor G TERM 635 557742 - 557717 - T 100 -17.7 -4.76041 | opp_overlap 557717 CATAGTTATTAAAAA GCCCCGTAAGT GCAA ACTTACGGGGC TTTTTTTTGTTATTG TERM 636 557717 - 557742 + T 100 -17.7 -6.22691 | opp_overlap 557717 CATAGTTATTAAAAA GCCCCGTAAGT GCAA ACTTACGGGGC TTTTTTTTGTTATTG VFMJ11_0532 557982 - 557752 - | hypothetical protein TERM 637 558073 - 558038 - R 100 -14.2 -3.38951 | opp_overlap 558048, overlap 558041 558048 CTATGAAGATAGTAA CAATAAAAAAGGGAGC GATA GCTCCCTTTTTTGCTG AAGGTGATAATGACT TERM 638 558070 - 558041 - R 95 -12.3 -3.82205 | opp_overlap 558048, overlap 558038 558048 TGAAGATAGTAACAA TAAAAAAGGGAGC GATA GCTCCCTTTTTTG CTGAAGGTGATAATG TERM 639 558063 - 558048 - R 100 -10.4 -5.66229 | opp_overlap 558048, overlap 558041 558038 AGTAACAATAAAAAA GGGAGC GATA GCTCCC TTTTTTGCTGAAGGT TERM 640 558048 - 558063 + r 100 -10.4 -5.14965 | opp_overlap 558041 558038 558048 AGTAACAATAAAAAA GGGAGC GATA GCTCCC TTTTTTGCTGAAGGT VFMJ11_0533 559365 - 558088 - | cytosine deaminase TERM 641 559331 - 559342 + g 86 -4.4 -5.5112 | AAACCATCTTGATCT CGTA GAGC TACG TTTTTTATTAATAAA TERM 642 559393 - 559415 + r 77 -3.4 -5.52023 | overlap 559397 TATACTGTTTCTGTT TCTGTTTCTG TTT CAGAGATCGA TTTTTTGTTAATCAT VFMJ11_0534 560630 - 559377 - | cytosine permease TERM 643 559955 - 559939 - G 91 -9.5 -4.57482 | TTACCGATAAAGAAA GCTATCA TTG TGATAGC AACGGCCCCCATTGG TERM 644 560723 - 560701 - R 70 -3.6 -4.89521 | opp_overlap 560701 560699 AGAGTCTAAAGAAAA TTATATTATT GTC AATAATGTAA TCTTGGTTTTTGTTT TERM 645 560977 - 561016 + r 100 -11.8 -4.9445 | gap 1, opp_overlap 560961 560980 560985, overlap 560980 560985 TATATCTTTTAGATA AAACAAAAGCCTT-AAAGT ATT ACTTTTAAGGCTTTTGTTA TTTTTACTTGGTTAT TERM 646 560980 - 561013 + r 100 -13.5 -4.54681 | gap 1, opp_overlap 560980 560985, overlap 560977 560985 ATCTTTTAGATAAAA CAAAAGCCTT-AAAGT ATT ACTTTTAAGGCTTTTG TTATTTTTACTTGGT TERM 647 561013 - 560980 - R 100 -13.5 -4.52857 | gap 1, opp_overlap 560980 560977 560985, overlap 560985 ATCTTTTAGATAAAA CAAAAGCCTT-AAAGT ATT ACTTTTAAGGCTTTTG TTATTTTTACTTGGT TERM 648 561008 - 560985 - R 89 -7.6 -5.23292 | gap 1, opp_overlap 560980 560977 560985, overlap 560980 TTAGATAAAACAAAA GCCTT-AAAGT ATT ACTTTTAAGGC TTTTGTTATTTTTAC TERM 649 560985 - 561008 + r 88 -7.6 -5.16681 | gap 1, opp_overlap 560985 560980, overlap 560980 560977 TTAGATAAAACAAAA GCCTT-AAAGT ATT ACTTTTAAGGC TTTTGTTATTTTTAC VFMJ11_0535 562747 - 561071 - | long-chain-fatty-acid--CoA ligase TERM 650 561354 - 561331 - G 81 -7.4 -4.64676 | opp_overlap 561333 GTACTGCTAATAAAA TAGGACCAGG TAGA CCTGAGCCTA TTAAACACATCATTT TERM 651 562916 - 562897 - R 89 -6.4 -5.65177 | opp_overlap 562897 ATAGGTATAAAAAAA GCCTGC ACATAAAA GCAGGC TTATTTGGATAGAGT mutS 565520 - 562956 - | DNA mismatch repair protein MutS VFMJ11_0537 565628 - 566125 + | CinA family protein recA 566266 - 567312 + | protein RecA TERM 652 567343 - 567362 + F 93 -7.9 -5.4251 | opp_overlap 567343 TAATATTTTTTAAAA GCCAAAC CTTAGT GTTTGGC TTTTTTATATCTAGC TERM 653 567362 - 567343 - f 78 -7.9 -4.11371 | opp_overlap 567343 TAATATTTTTTAAAA GCCAAAC CTTAGT GTTTGGC TTTTTTATATCTAGC TERM 654 567522 - 567494 - f 77 -5.4 -5.00884 | gap 1, opp_overlap 567496 ATTCTGTCTAAAAAA CACTGCTTGTCCT AATG AGTACAAG-AGTG AGTTAAACTACGATT TERM 655 568617 - 568602 - g 87 -6.2 -5.2166 | GAAGAACTGAAAAAA CAACAA GCGC TTGTTG AAAAAGTACTTAAGA alaS 567555 - 570134 + | alanyl-tRNA synthetase TERM 656 570181 - 570210 + G 100 -14.5 -3.55071 | gap 1, opp_overlap 570183, overlap 570184 AGTATGGTGGTACAT CAG-TTGGATCCGT TGA ACGGATCCAATCTG TTTCCGAACGTATCA TERM 657 570207 - 570183 - g 79 -11.5 -2.62396 | opp_overlap 570181 570184 TATGGTGGTACATCA GTTGGATCCGT TGA ACGGATCCAAT CTGTTTCCGAACGTA TERM 658 570184 - 570206 + G 100 -15 -3.24411 | opp_overlap 570183, overlap 570181 ATGGTGGTACATCAG TTGGATCCGT TGA ACGGATCCAA TCTGTTTCCGAACGT TERM 659 570234 - 570264 + G 90 -11.2 -3.89822 | opp_overlap 570234 570232 CGTATCATATCAACA CTGCAACAAGGGCA TGA TGTCGTTGTTGCGG TTTCTGCCATGGCTG TERM 660 570894 - 570882 - g 70 -5.5 -4.3208 | TGTGAGAATCCAAAA CAGCC TTT AGCTG TAACTGGATTAGCAC VFMJ11_0540 570147 - 571316 + | Aspartate kinase csrA 571398 - 571595 + | carbon storage regulator TERM 661 572869 - 572902 + F 93 -14.1 -2.87931 | opp_overlap 572877, overlap 572877 TGGCGCACCATTCTT TAAAAGAACCCGATC ATTT GGTCGGGTTTTTTTA TGTCTGAAAGATAAG TERM 662 572877 - 572894 + F 100 -9.1 -5.76633 | opp_overlap 572877, overlap 572869 CATTCTTTAAAAGAA CCCGATC ATTT GGTCGGG TTTTTTTATGTCTGA TERM 663 572894 - 572877 - f 75 -6.9 -4.17762 | opp_overlap 572869 572877 CATTCTTTAAAAGAA CCCGATC ATTT GGTCGGG TTTTTTTATGTCTGA VFMJ11_0550 573188 - 573439 + | sodium pump decarboxylase, gamma subunit oadA 573476 - 575263 + | oxaloacetate decarboxylase alpha subunit VFMJ11_0552 575279 - 576409 + | oxaloacetate decarboxylase beta chain TERM 664 576435 - 576450 + F 100 -8.2 -5.86976 | opp_overlap 576430 576435 AACTTAACAATAAAA GGGTGC TGAT GCGCCC TTTTTTATTTTATGC TERM 665 576450 - 576435 - f 81 -6 -4.91987 | opp_overlap 576435, overlap 576430 AACTTAACAATAAAA GGGTGC TGAT GCGCCC TTTTTTATTTTATGC VFMJ11_0553 576506 - 576937 + | inner membrane protein YqaA TERM 666 579202 - 579186 - g 73 -2.4 -5.243 | overlap 579190 TAAATGAGCAAAAAA TTTATT TGGTC AATAAA CCAAATGCACCTCAA TERM 667 579396 - 579407 + G 73 -2.2 -5.24129 | TGGGTAATAAAGAGA TCGG AATG TCGA TTTTTTATGCGCAAG VFMJ11_0554 576947 - 579799 + | peptidase family M16 TERM 668 579815 - 579839 + F 100 -12.3 -5.21709 | opp_overlap 579814 579813 TAACAATTAGAAAGG CGGCAATAAGT AGT ATTTATTGCCG TTTTTTCGTATCCAA TERM 669 581112 - 581102 - g 70 -5.4 -4.3208 | GGTTAGAACTGAAAA TTGG TTG CCAA GGTGAACGATTAACT gshA_1 579931 - 581496 + | glutamate--cysteine ligase TERM 670 581517 - 581543 + F 100 -10.2 -5.75342 | ACGAAGAAATATCTA GCACTGTTATTC TAT GGGTAGCAGTGC TTTTTTTTGAGAAAA VFMJ11_0556 581563 - 582162 + | transcriptional regulatory protein luxS 582194 - 582712 + | S-ribosylhomocysteinase LuxS TERM 671 582736 - 582754 + T 95 -8.8 -5.28176 | opp_overlap 582736 TTAATTTGAAAAAAA GCCCGC AGTTTTA GCGGGC TTTTTTCTAGCTGAA TERM 672 582754 - 582736 - T 95 -8.8 -5.47399 | opp_overlap 582736 TTAATTTGAAAAAAA GCCCGC AGTTTTA GCGGGC TTTTTTCTAGCTGAA VFMJ11_0558 584080 - 582806 - | hemolysin TERM 673 582841 - 582854 + g 71 -5.3 -4.63218 | overlap 582825 TTGGAAATACCTTTA CAAGA TTAA TCTTG TTTTCTTCGACAGCG TERM 674 584139 - 584110 - R 89 -11.7 -3.47349 | opp_overlap 584112 584116 GTTTTAAAGGGAGAA TATCAATCTAAGC GCTT ACTTAGATTGATA TAATGAAAAGGTATT TERM 675 584112 - 584137 + r 73 -9.2 -2.78596 | opp_overlap 584110, overlap 584116 TTTAAAGGGAGAATA TCAATCTAAG CGCTTA CTTAGATTGA TATAATGAAAAGGTA VFMJ11_0559 585008 - 584214 - | cytochrome c assembly protein TERM 676 585405 - 585389 - g 71 -3.7 -4.87273 | overlap 585391 AAGAGTTCATAAAAA TTGTTCA AGC TGAACTA GAAGCGGTTATGGGG ffh 585160 - 586533 + | signal recognition particle protein TERM 677 586734 - 586744 + F 79 -4 -5.40474 | overlap 586731 586730 TTTTGGCACGAGGGC TCAA AAA TTGA TTTTTTTGGGCCAAT rpsP 586791 - 587039 + | ribosomal protein S16 rimM 587067 - 587594 + | 16S rRNA processing protein RimM TERM 678 587659 - 587669 + G 73 -6.8 -4.14739 | CCTGAAATGTTCCGT TCGG TTA CCGA TTTTGGGGTAACTAG trmD 587617 - 588366 + | tRNA (guanine-N1)-methyltransferase rplS 588408 - 588761 + | ribosomal protein L19 TERM 679 588795 - 588816 + F 100 -15.9 -5.64274 | opp_overlap 588795 CAAATGTGCTATGAA GGTGCGCTG TTAT CAGCGCACC TTTTTTTATACCTAG TERM 680 588816 - 588795 - f 100 -15.9 -3.16055 | opp_overlap 588795 CAAATGTGCTATGAA GGTGCGCTG TTAT CAGCGCACC TTTTTTTATACCTAG VFMJ11_0565 588977 - 590050 + | 3-deoxy-7-phosphoheptulonate synthase TERM 681 590259 - 590249 - g 84 -8.2 -4.7878 | opp_overlap 590248 GAGGCAGAAAAGAAA GGCG TAC CGCC CTCATTAATTGAAGA VFMJ11_0566 590057 - 591190 + | T-protein TERM 682 591212 - 591248 + T 100 -15.4 -3.34522 | opp_overlap 591220, overlap 591220 TAAGAAGGCATAGAA TGTAAAAAGGGTGAGC CATGA GCTCACCCTTTTTGTA TTGATTAAACGGTGT TERM 683 591220 - 591240 + T 100 -12.6 -5.1485 | opp_overlap 591220, overlap 591212 CATAGAATGTAAAAA GGGTGAGC CATGA GCTCACCC TTTTTGTATTGATTA TERM 684 591240 - 591220 - T 100 -13.3 -4.79756 | opp_overlap 591220 591212 CATAGAATGTAAAAA GGGTGAGCC ATG AGCTCACCC TTTTTGTATTGATTA VFMJ11_0567 592277 - 591264 - | membrane protein VFMJ11_0568 592664 - 592302 - | type IV pilus assembly protein PilZ TERM 685 592733 - 592750 + r 75 -9.8 -2.64416 | opp_overlap 592733, overlap 592732 TATGTCCAATAAAAA GGCCGC TTGAGT GCGGCC CTTATGATAAACATC TERM 686 592750 - 592733 - R 100 -9.8 -5.07486 | opp_overlap 592732 592733 TATGTCCAATAAAAA GGCCGC TTGAGT GCGGCC CTTATGATAAACATC VFMJ11_0569 594448 - 592781 - | ABC transporter ATP-binding protein TERM 687 595256 - 595246 - g 78 -4 -5.28176 | CTTATTTAGAAAAAA TGTT GAA AACA GATACCGCAAAAGAA VFMJ11_0570 594636 - 596570 + | soluble lytic murein transglycosylase TERM 688 596649 - 596614 - f 71 -5.5 -4.46233 | opp_overlap 596623, overlap 596616 596620 596623 TTAAGCTTAAATAAA TATAAAGTAGGGGAC TTAATT GTCCCCTTTTTTACA ATTGTATGAGGATAC TERM 689 596640 - 596623 - f 70 -8.4 -3.17739 | opp_overlap 596623, overlap 596620 596616 596614 AATAAATATAAAGTA GGGGAC TTAATT GTCCCC TTTTTTACAATTGTA TERM 690 596623 - 596640 + F 90 -8.4 -5.11033 | opp_overlap 596620 596616 596614 596623 AATAAATATAAAGTA GGGGAC TTAATT GTCCCC TTTTTTACAATTGTA TERM 691 596936 - 596910 - g 77 -5.1 -4.95957 | opp_overlap 596910 CAAATGAATTAAAAA GCCATACTGAC GAAGA GAAAGTATGGC TTATGGATTTATTAG trpR 596666 - 596992 + | trp operon repressor VFMJ11_0572 597473 - 596961 - | hypothetical protein VFMJ11_0573 598674 - 597496 - | P-protein TERM 692 598744 - 598763 + r 100 -13.6 -3.65603 | opp_overlap 598744 TGCGTCAAGAAAAAA CAGCGCTC AAAT GAGCGCTG TTCTTAAGAATCTTT TERM 693 598763 - 598744 - R 100 -13.6 -5.4505 | opp_overlap 598744 TGCGTCAAGAAAAAA CAGCGCTC AAAT GAGCGCTG TTCTTAAGAATCTTT raiA_2 599143 - 598790 - | ribosomal subunit interface protein TERM 694 599210 - 599223 + r 82 -5.3 -5.27399 | opp_overlap 599210 AGAGTTAAAAATAAA GTGAT CAAG ATCAC TTTTTTGATGTGTTG TERM 695 599223 - 599210 - R 77 -5.3 -4.89966 | opp_overlap 599210 AGAGTTAAAAATAAA GTGAT CAAG ATCAC TTTTTTGATGTGTTG TERM 696 599485 - 599462 - R 100 -11.8 -5.4251 | gap 1, opp_overlap 599462 TCCAGACATAAAAAA GCAGTGCTCGA TTC TCG-GCACTGC TTTTTTGTTTTTATA TERM 697 599462 - 599485 + r 100 -11.8 -5.98675 | gap 1, opp_overlap 599462 TCCAGACATAAAAAA GCAGTGCTCGA TTC TCG-GCACTGC TTTTTTGTTTTTATA VFMJ11_0575 600308 - 599583 - | competence lipoprotein ComL VFMJ11_0576 600470 - 601444 + | ribosomal large subunit pseudouridine synthase D TERM 698 601610 - 601638 + G 90 -13.2 -2.71263 | opp_overlap 601607 601604 601603 GTGAAAAACTGATTA CGTTGGGGCAGT TACCT ACTGCACCAACG TGGTTAAACCAAATT VFMJ11_0577 601447 - 602181 + | hypothetical protein clpB 602287 - 604872 + | ATP-dependent chaperone ClpB TERM 699 606848 - 606829 - T 72 -9.2 -2.65808 | opp_overlap 606835, overlap 606826 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 700 606930 - 606963 + T 100 -12.1 -4.99134 | overlap 606917 606955 AGTTGAAGTTGTAGA GCTTTAATTAATAAT TCCG ATTATTGATTAAAGC TTTTTGCTTTAAGCT TERM 701 607059 - 607047 - T 80 -4.8 -5.24291 | opp_overlap 607047 AAAAGTAAAACAAAA CAGC TCAAG GCTG TAATTAAGTTAAATC TERM 702 607189 - 607170 - T 73 -8.6 -3.23708 | overlap 607173 TCCGGCGAAAAACCA GAACTCGC AATG ACGAGTTC AACCTTGGTTGCTGT TERM 703 607750 - 607738 - T 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 704 608543 - 608527 - T 85 -9.4 -4.08546 | overlap 608539 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 705 610592 - 610576 - T 81 -10.9 -2.63631 | opp_overlap 610575 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 706 610659 - 610636 - T 100 -14 -4.04806 | opp_overlap 610636 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 707 610636 - 610659 + T 100 -14 -4.93696 | opp_overlap 610636 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 708 610783 - 610760 - T 100 -14 -4.04806 | opp_overlap 610760 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 709 610760 - 610783 + T 100 -14 -4.93696 | opp_overlap 610760 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 710 610884 - 610907 + T 100 -14 -4.93696 | opp_overlap 610884 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 711 610907 - 610884 - T 100 -14 -4.04806 | opp_overlap 610884 TGCCATATTAAAGAA GGCTCATATC GAAA GATATGAGCC TTTTTGCTATTTGCA TERM 712 611008 - 611031 + T 86 -8.2 -4.81083 | opp_overlap 611008 TGCCATACTTAAGAA GGTTCATATC GAAA GGTATGAGCC TTTTTGCTACTTGCA TERM 713 611155 - 611132 - T 79 -8.2 -4.04806 | opp_overlap 611133, overlap 611133 TGCCATATTAAAGAA GGCTCATATC GGAA GATATGAGCT TTTTTGCTATTTGCG TERM 714 611154 - 611133 - T 84 -11.7 -3.02402 | opp_overlap 611133, overlap 611132 GCCATATTAAAGAAG GCTCATATC GGAA GATATGAGC TTTTTTGCTATTTGC TERM 715 611133 - 611154 + T 100 -11.7 -5.32699 | opp_overlap 611133 611132 GCCATATTAAAGAAG GCTCATATC GGAA GATATGAGC TTTTTTGCTATTTGC VFMJ11_0582 611664 - 611191 - | fimbrial protein pilin VFMJ11_0583 611768 - 612268 + | Tfp pilus assembly protein FimT VFMJ11_0584 612249 - 612848 + | prepilin-type N- cleavage/methylation domain protein TERM 716 612974 - 612956 - g 78 -7.4 -4.45544 | TTTTATCAAGTAAAA CGAGCTCA AAA TGAGGTCG AGGCAAGAAAAGGAT TERM 717 613947 - 613967 + G 71 -9.8 -2.77118 | ATACTTTAGGTCAAT CGGCATTA TTTTT TAATGCCG TAAATTTTAAATATA VFMJ11_0585 612845 - 614059 + | hypothetical protein TERM 718 614151 - 614136 - g 77 -6.2 -4.64676 | TTAGGCTTAATAAAA CTACAA GTCT TTGTAG ATAAAAAATCAGAAT VFMJ11_0586 614049 - 614477 + | Tfp pilus assembly protein PilV TERM 719 614502 - 614474 - T 95 -14.1 -3.20432 | opp_overlap 614474 ATATAGTGAATTCAA TTAGGTTCAAACA TTA TGCTTGAACCTAA TTTTTCATCAATCAC TERM 720 614474 - 614502 + T 100 -11.9 -4.7497 | opp_overlap 614474 ATATAGTGAATTCAA TTAGGTTCAAACA TTA TGCTTGAACCTAA TTTTTCATCAATCAC VFMJ11_0587 615665 - 614514 - | chromate transport protein TERM 721 615616 - 615600 - G 70 -9.4 -2.69596 | overlap 615599 TCTAAAGTAACCAAT GTGGGC AGCTG GCCCAC CAAAGCTTACCCAGC VFMJ11_0588 615775 - 616707 + | transcriptional regulator, LysR family VFMJ11_0589 616914 - 616726 - | hypothetical protein TERM 722 616966 - 616939 - R 100 -15 -5.76237 | opp_overlap 616936 TATATAAATAAAAAA TGGCCAGCAACT ATTT AGTTACTGGCCA TAATACTATCTTGGT dapD 618058 - 617027 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 723 617800 - 617818 + g 71 -3.8 -4.84359 | CAACAAGAACTAATG GCTGTTTA GAT TGAACTGC TTTTTCTGCAAATGC TERM 724 618260 - 618229 - R 82 -8.9 -4.04318 | opp_overlap 618235, overlap 618235 TGTATAGAGTACAAA TAAAAATAGCAGC GATTAG GCTGCTATTTTGA AAGTATTTTTAGCAA TERM 725 618254 - 618235 - R 93 -7.9 -5.40464 | opp_overlap 618235, overlap 618229 GAGTACAAATAAAAA TAGCAGC GATTAG GCTGCTA TTTTGAAAGTATTTT TERM 726 618235 - 618254 + r 78 -7.9 -4.16146 | opp_overlap 618229 618235 GAGTACAAATAAAAA TAGCAGC GATTAG GCTGCTA TTTTGAAAGTATTTT VFMJ11_0591 618566 - 618276 - | DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS TERM 727 618743 - 618709 - H 73 -7.4 -3.73088 | opp_overlap 618717, overlap 618712 AGAGTTGAGCAAGAA TAATTAAAGATGTATT TTA AATGCAACTTTAATTA AAAAGGTGAACAGCA VFMJ11_0592 618758 - 619393 + | alternative oxidase 2 TERM 728 619424 - 619407 - T 82 -9.9 -3.5525 | opp_overlap 619407 AGATATTTGTTGAAA TGAGGCT AAAC AGCCTCA TTTTTGTTGAATAAA TERM 729 619407 - 619424 + T 100 -9.9 -5.10461 | opp_overlap 619407 AGATATTTGTTGAAA TGAGGCT AAAC AGCCTCA TTTTTGTTGAATAAA VFMJ11_0593 620300 - 619422 - | transcriptional regulator, LysR family TERM 730 620555 - 620531 - g 75 -7.9 -4.07568 | opp_overlap 620538, overlap 620532 TTGGTGCTGGGAAAA CGCATTACCAT TAA ATGGTTATGCA CAGTGGATCTCAGCG VFMJ11_0594 620436 - 621425 + | tellurite resistance protein TERM 731 623290 - 623308 + G 72 -3.1 -5.1615 | opp_overlap 623275 623287, overlap 623287 CATGGCGAACCACCA TCAACCA ATTAA TGGATGA TTTTTTAGATGTTGA recC 621507 - 624926 + | exodeoxyribonuclease V, gamma subunit TERM 732 626160 - 626150 - g 80 -2.4 -5.59502 | GAAAAAACCAAAAAA GGTG AAG CCCC AGAACACGCTGTATT TERM 733 626459 - 626469 + G 79 -6.8 -4.59342 | opp_overlap 626458 CTTTATCAAGATCAG CCAC AGT GTGG TTTATTTATGATCGG TERM 734 628549 - 628572 + G 72 -9 -3.41051 | gap 1, opp_overlap 628544 628549 CGATTGGAAATCTAA TCATCTGGGAG ATT CTCC-AGATGA TTATGGTGGGGATGC TERM 735 628572 - 628549 - g 72 -9 -3.28497 | gap 1, opp_overlap 628549, overlap 628544 CGATTGGAAATCTAA TCATCTGGGAG ATT CTCC-AGATGA TTATGGTGGGGATGC recB 625226 - 628852 + | exodeoxyribonuclease V, beta subunit recD 628845 - 630863 + | exodeoxyribonuclease V, alpha subunit VFMJ11_0598 631074 - 631427 + | quaternary ammonium compound-resistance protein QacE TERM 736 631507 - 631476 - T 100 -10.8 -4.48713 | opp_overlap 631478, overlap 631478 TTCAGTAAGAACAAA TAGGCCGCAAAGGG ATTT CCTTCTGCGGCCTT TTTTATAACCCTTTT TERM 737 631505 - 631478 - T 100 -13.4 -3.8457 | opp_overlap 631478, overlap 631476 CAGTAAGAACAAATA GGCCGCAAAGGG ATTT CCTTCTGCGGCC TTTTTTATAACCCTT TERM 738 631478 - 631505 + T 100 -13.4 -5.25803 | opp_overlap 631478 631476 CAGTAAGAACAAATA GGCCGCAAAGGG ATTT CCTTCTGCGGCC TTTTTTATAACCCTT argA 632850 - 631510 - | amino-acid N-acetyltransferase VFMJ11_0600 633003 - 633386 + | hypothetical protein TERM 739 633420 - 633453 + F 72 -6.1 -4.28111 | overlap 633421 ATTTACCTGCTTATT TTCTATTCGAGATAG CCCT TTATCTCGAATAGCC TTTCTTCGTAATGTC TERM 740 633421 - 633452 + F 79 -9.6 -3.16144 | overlap 633420 TTTACCTGCTTATTT TCTATTCGAGATAG CCCT TTATCTCGAATAGC CTTTCTTCGTAATGT VFMJ11_0601 633577 - 634677 + | membrane-bound lytic murein transglycosylase A TERM 741 634712 - 634732 + F 95 -2.5 -6.20267 | TGATCTTCTAAAAAA GAGTGCG TATAAAT CGTGCTC TTTTTTTGTTTTTGA VFMJ11_0602 634761 - 635576 + | ThiF family protein csdE 636245 - 635811 - | cysteine desulfurase, sulfur acceptor subunit CsdE TERM 742 635853 - 635883 + g 83 -12 -3.14878 | overlap 635858 CGTTTCAATGATCGC CTTAAGCCCATTAC CAC GTGATGGGCTTAAA TGTTCAATTAACCCC TERM 743 635858 - 635878 + g 83 -11.9 -3.20236 | overlap 635853 CAATGATCGCCTTAA GCCCATTAC CAC GTGATGGGC TTAAATGTTCAATTA csdA 637649 - 636432 - | cysteine desulfurase, catalytic subunit CsdA TERM 744 637749 - 637731 - H 100 -10.3 -5.83822 | TACAGGCAAAAAAAA GCACCGT ATTAA ACGGTGC TAACTAATCTTTTTT TERM 745 638304 - 638290 - g 71 -7.1 -3.95036 | AAGTATTGGAAAGAA GTGCC AAAGG GGCAC TAACTATTAGTTTAC VFMJ11_0605 638019 - 638927 + | glycine cleavage system transcriptional activator VFMJ11_0606 638920 - 639306 + | membrane protein TERM 746 639745 - 639727 - g 71 -6 -4.22041 | opp_overlap 639727 AAATGCTAACAGAAA GAGATTCA AAT CGAATCCC TGTTTTGCATATTTG VFMJ11_0607 639315 - 640394 + | putative RNA 2'-O-ribose methyltransferase MtfA TERM 747 640446 - 640474 + T 100 -16.1 -5.10208 | opp_overlap 640446 GTGAGAAATAAAAAA CGCCCGCTGAT GTTGATA ATCAGCGGGCG TTTTTATTGAACTTC TERM 748 640474 - 640446 - T 100 -16.1 -5.72622 | opp_overlap 640446 GTGAGAAATAAAAAA CGCCCGCTGAT GTTGATA ATCAGCGGGCG TTTTTATTGAACTTC VFMJ11_0608 641584 - 640796 - | hypothetical protein TERM 749 641639 - 641619 - R 100 -9.7 -5.89659 | opp_overlap 641619 ATAAAAAAAGAAAAA GCCCATGCA ATT CGCATAGGC TTATTATTGTACGTT VFMJ11_0609 643036 - 641678 - | lysine decarboxylase family protein TERM 750 643105 - 643089 - R 74 -9.5 -3.00617 | opp_overlap 643082, overlap 643082 643081 TAATAAACTTACACA GCAAAAG AGA CTTTTGC TAGGAAAATTGTAAA TERM 751 643194 - 643214 + r 76 -2.5 -5.47846 | opp_overlap 643199, overlap 643195 TAATGATAACTACGC AGTAATGAG TTG CTCAATACC TTTTGTTTTTTGCTT VFMJ11_0610 644750 - 643188 - | diguanylate cyclase/phosphodiesterase domain 1 TERM 752 643463 - 643453 - G 75 -5.4 -4.731 | AAGCGAGCAACAAAA TCAG TAT CTGA CACTTGGTTTTCAAT VFMJ11_0611 647145 - 644926 - | TPR-repeat-containing protein TERM 753 647195 - 647229 + r 95 -14.6 -3.1637 | TATCGTTGTGAGGGG ATTTGTCTACAAAGAA ACG TTCTTTGTAGACAAAA TTAATCAAAATGTCT queF 648089 - 647244 - | queuine synthase TERM 754 647758 - 647780 + g 82 -6.4 -4.99947 | TTTACCAATGTTTCT TTTACTTCAT CCC ATGAGGTGAA TTTTGTTTGGTTAAA VFMJ11_0613 648194 - 648745 + | protein syd TERM 755 648770 - 648791 + F 100 -9.5 -5.61881 | opp_overlap 648770 648766 AAATGATTAAATCAA TTCCGGTGT AATT ACATCGGAA TTTTTATTTTTAAAG VFMJ11_0614 648827 - 649600 + | Zn-ribbon-containing protein TERM 756 649637 - 649618 - T 100 -9.3 -5.06414 | opp_overlap 649618 TCGGTTGAATAAAAA TGGGAGC CCAAAT GCTCCCA TTTTTTATATTTTGG TERM 757 649618 - 649637 + T 100 -9.3 -5.63645 | opp_overlap 649618 TCGGTTGAATAAAAA TGGGAGC CCAAAT GCTCCCA TTTTTTATATTTTGG VFMJ11_0615 650091 - 649642 - | protein VV1_1847 VFMJ11_0616 650360 - 650091 - | hypothetical protein TERM 758 650499 - 650531 + H 100 -10.7 -4.80453 | GAGAACATGCTTGTG CGATATCTCTCACGT GCA AGGTGAGAAATATCG TTTATTTTATCGTAA TERM 759 651066 - 651091 + H 100 -14.1 -5.75538 | opp_overlap 651066 CGAGTAGAGTTATAA CCCCATTAAGC GAGA GCTTGATGGGG TTTTTCTTTTTTACG TERM 760 651091 - 651066 - H 90 -11.9 -3.40299 | opp_overlap 651066 CGAGTAGAGTTATAA CCCCATTAAGC GAGA GCTTGATGGGG TTTTTCTTTTTTACG VFMJ11_0617 651311 - 652666 + | lichenan permease iic component TERM 761 652806 - 652783 - g 73 -2.4 -5.22006 | TCAGCAGAACAAAAA GGATTAGATA TTCA TATCGAAGCC CACGGCGTTGAAACG TERM 762 652938 - 652924 - g 73 -5.7 -4.62669 | opp_overlap 652931 GAAGTAAATAAGAAA GTCGA AGTCA TCGAC ATGATGGATTACGGC VFMJ11_0618 652699 - 653004 + | BglE TERM 763 653763 - 653787 + G 77 -10.9 -2.88961 | overlap 653766 653783 TGCTGCAATGCATGC GAACCAATTTA GTA TGAATTGGTTC TATGATCCTATTTTG TERM 764 653857 - 653845 - g 73 -7.7 -3.90843 | opp_overlap 653844, overlap 653853 AAGCAATTACAAGAA GAAGG TAA CCTTC CTGATTGGACGGATG VFMJ11_0619 653044 - 654453 + | beta-glucosidase A VFMJ11_0620 654480 - 655415 + | glucokinase VFMJ11_0621 655427 - 655750 + | lichenan-specific phosphotransferase enzyme iia component VFMJ11_0622 655820 - 656824 + | HTH-type transcriptional regulator AscG TERM 765 656844 - 656861 + F 93 -4.1 -6.01725 | TTTTATTTTCAATAA GCATCGA TTAA TTGGTGC TTTTTTGTTTTTATT TERM 766 656923 - 656910 - f 72 -2.5 -5.29885 | AAGCTAAAAATAAAA TATAT ATAA ATATA AAACGTGCGTGATCA TERM 767 657228 - 657217 - g 73 -5.8 -4.54727 | opp_overlap 657217 657215 CTCCTGAAACCAAAA TCCC TGAT GGGA TCGTTTTTTCTGGTT VFMJ11_0623 657084 - 658361 + | outer membrane protein S TERM 768 658384 - 658426 + T 81 -10.8 -2.67423 | gap 1, overlap 658389 658390 GATATAAAATAAGGG GGGAATTGGGCTAGCAGCA ATACTA TG-TGCTAGCCCAGTTTTC ATTAGTATTCTTCAG TERM 769 658389 - 658421 + T 93 -9.3 -4.49337 | gap 1, overlap 658384 658390 AAAATAAGGGGGGAA TTGGGCTAGCAGCA ATACTA TG-TGCTAGCCCAG TTTTCATTAGTATTC TERM 770 658390 - 658420 + T 83 -10.6 -3.28518 | gap 1, overlap 658389 658384 AAATAAGGGGGGAAT TGGGCTAGCAGCA ATACTA TG-TGCTAGCCCA GTTTTCATTAGTATT VFMJ11_0624 658736 - 658428 - | hypothetical protein VFMJ11_0625 659777 - 658740 - | hypothetical protein VFMJ11_0626 659880 - 660194 + | tRNA pseudouridine synthase C VFMJ11_0627 660196 - 660975 + | tRNA pseudouridine synthase C TERM 771 660993 - 661017 + T 100 -14.4 -5.47821 | opp_overlap 660993 TTTTATAATAAAAAA GGGAAGACAG TTTAT CTGTCTTCCC TTTTTTTAAATCAAT TERM 772 661017 - 660993 - T 100 -14.4 -5.55769 | opp_overlap 660993 TTTTATAATAAAAAA GGGAAGACAG TTTAT CTGTCTTCCC TTTTTTTAAATCAAT VFMJ11_0628 661844 - 661041 - | inositol-1-monophosphatase VFMJ11_0629 662052 - 662777 + | RNA methyltransferase TrmH, group 1 VFMJ11_0630 662924 - 663391 + | Rrf2 family protein TERM 773 664323 - 664333 + G 70 -5.4 -4.42851 | opp_overlap 664323 CGTGTACCAAGTAAC CTGA ATA TCAG TTTTGAATTTGTTGA iscS 663378 - 664637 + | cysteine desulfurase IscS iscU 664672 - 665055 + | FeS cluster assembly scaffold IscU iscA 665180 - 665503 + | iron-sulfur cluster assembly protein IscA TERM 774 665541 - 665573 + G 90 -10.6 -4.22375 | gap 1, overlap 665564 ATTTTGAATTATTTG GGCTGCCGAACCAGT TTGA ACTGGAT-GGCGGCC TTCTTTCTCTTCAAT hscB 665519 - 666034 + | Fe-S protein assembly co-chaperone HscB hscA 666073 - 667923 + | Fe-S protein assembly chaperone HscA fdx 667926 - 668264 + | ferredoxin, 2Fe-2S type, ISC system iscX 668388 - 668588 + | FeS assembly protein IscX VFMJ11_0638 668818 - 670104 + | peptidase B TERM 775 670142 - 670105 - f 75 -7.1 -4.08651 | opp_overlap 670112, overlap 670111 670112 ATCTTAACTAAATAA TTAAAATGAAGATCGAG CTCG CTCGGTCTTCTTTTTTA ACAGGTAATTCCTAT TERM 776 670136 - 670111 - f 74 -6.1 -4.63107 | opp_overlap 670112, overlap 670105 670112 ACTAAATAATTAAAA TGAAGATCGAG CTCG CTCGGTCTTCT TTTTTAACAGGTAAT TERM 777 670135 - 670112 - f 81 -9.6 -3.36237 | opp_overlap 670112, overlap 670111 670105 CTAAATAATTAAAAT GAAGATCGAG CTCG CTCGGTCTTC TTTTTTAACAGGTAA TERM 778 670112 - 670135 + F 100 -11.8 -5.02074 | opp_overlap 670111 670105 670112 CTAAATAATTAAAAT GAAGATCGAG CTCG CTCGGTCTTC TTTTTTAACAGGTAA TERM 779 670265 - 670280 + F 82 -3.2 -5.69793 | overlap 670267 TTATCGAAAAATTCC GTCTTG TTCT CAAGCC TTTTTTCTTTGCTAT VFMJ11_0639 670388 - 670822 + | nucleoside diphosphate kinase TERM 780 670848 - 670876 + F 100 -10.4 -4.69053 | AGCCTAGAACGTTCG CAAGCTCCCT AAAGAATAA AGGGAGCTTG TTTTGTTGAATGCTC TERM 781 670929 - 670943 + F 70 -7.2 -3.71284 | ATCAGTTTTCTTTTT TGTAGA TAC TCTACA TTCTCTTACTCGAAC VFMJ11_0640 671063 - 672181 + | radical SAM enzyme, Cfr family TERM 782 672340 - 672305 - g 79 -8.5 -4.06533 | gap 1, opp_overlap 672307, overlap 672307 672308 GAAATGACCAAAGAA GAG-GTAATTCGAGCT GCTGA AGCTCGAATTACACTT GGATTAAGCTACTTA TERM 783 672307 - 672338 + G 79 -11.1 -3.18452 | gap 1, opp_overlap 672305 672307 672308 AATGACCAAAGAAGA G-GTAATTCGAGCT GCTGA AGCTCGAATTACAC TTGGATTAAGCTACT TERM 784 672337 - 672307 - g 88 -11.3 -3.60925 | opp_overlap 672307, overlap 672305 672308 AATGACCAAAGAAGA GGTAATTCGAGCT GCTGA AGCTCGAATTACA CTTGGATTAAGCTAC TERM 785 672336 - 672308 - g 95 -14.8 -2.75471 | opp_overlap 672307, overlap 672307 672305 ATGACCAAAGAAGAG GTAATTCGAGCT GCTGA AGCTCGAATTAC ACTTGGATTAAGCTA pilF 672212 - 672982 + | type IV pilus biogenesis/stability protein PilW TERM 786 673124 - 673152 + G 70 -9.7 -2.59534 | overlap 673123 673126 AGCGGATCAGTTTGA CATGGGTAAAC TGGCCAC GTTTACCCGTG GTTACTATCGTTCAT VFMJ11_0642 672963 - 673877 + | integral membrane protein ispG 673890 - 675008 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase hisS 675047 - 676315 + | histidyl-tRNA synthetase TERM 787 676492 - 676481 - g 70 -5.8 -4.42806 | TCACTGCGAAAGAAA CAGC TTCT GCTG CCTATGAAAGAGCGC VFMJ11_0645 676327 - 676938 + | Tetratricopeptide repeat family protein yfgL 676949 - 678106 + | outer membrane assembly lipoprotein YfgL TERM 788 678132 - 678159 + F 100 -9.8 -5.16681 | CTATAATTGTGAATT GGCTCCAAGTCC TTTT GGTTTTGGGGCC TTTTATTGTTTTTAG engA 678288 - 679790 + | ribosome-associated GTPase EngA TERM 789 679855 - 679825 - f 72 -8.3 -3.43338 | opp_overlap 679830, overlap 679830 ATGTATATTAAGTAA TAAAACGCCCATC TAGTT GTTGGGCGTTTTT TTTAGGTAAAAATCA TERM 790 679850 - 679830 - f 86 -8.2 -4.80178 | opp_overlap 679830, overlap 679825 TATTAAGTAATAAAA CGCCCATC TAGTT GTTGGGCG TTTTTTTTAGGTAAA TERM 791 679830 - 679850 + F 100 -8.2 -5.81412 | opp_overlap 679830 679825 TATTAAGTAATAAAA CGCCCATC TAGTT GTTGGGCG TTTTTTTTAGGTAAA VFMJ11_0648 679870 - 680745 + | hypothetical protein TERM 792 680770 - 680755 - f 74 -3.3 -5.23016 | opp_overlap 680755 680762, overlap 680762 AAATAATCTAAAAAA TGGAA ATTACA TTCCA TGTATATTTCATTCT VFMJ11_0649 681063 - 681296 + | hypothetical protein xseA 682638 - 681289 - | exodeoxyribonuclease VII, large subunit guaB 682847 - 684310 + | inosine-5'-monophosphate dehydrogenase TERM 793 685504 - 685489 - g 82 -6.2 -4.86939 | TAAGAAACTGAAAAA TGCTAA ATGG TTAGCA CAAGGTACTATCTAC VFMJ11_0652 684530 - 686083 + | gmp synthase (glutamine-hydrolyzing) TERM 794 686121 - 686134 + F 100 -9.5 -6.04953 | opp_overlap 686121 ATTTTGTTTATTAAA GCGCC GAAA GGCGC TTTTTTTGTTTCTAT TERM 795 686134 - 686121 - f 81 -9.5 -3.72695 | opp_overlap 686121 ATTTTGTTTATTAAA GCGCC GAAA GGCGC TTTTTTTGTTTCTAT VFMJ11_0653 686359 - 687918 + | aminobenzoyl-glutamate transport protein TERM 796 687939 - 687965 + T 100 -13.1 -5.61596 | opp_overlap 687939 ATTAGTAAAAATAAA GCCCTGAGAAT ATTGA GTTCTCAGGGC TTTTTTTATGAGAGT TERM 797 687965 - 687939 - T 100 -12.4 -4.92756 | opp_overlap 687939 ATTAGTAAAAATAAA GCCCTGAGAA TATTGAG TTCTCAGGGC TTTTTTTATGAGAGT VFMJ11_0654 688628 - 687993 - | YheO domain protein TERM 798 688655 - 688681 + r 100 -12.5 -4.48987 | opp_overlap 688652 688655 688657 ATGTTGGTGAAATGA GATGTCACTTA ACGGG TAAGTGACATC TTTTCATTATGACGC TERM 799 688681 - 688655 - R 86 -12.5 -2.90615 | opp_overlap 688655, overlap 688652 688657 ATGTTGGTGAAATGA GATGTCACTTA ACGGG TAAGTGACATC TTTTCATTATGACGC TERM 800 688679 - 688657 - R 74 -9.3 -3.00525 | opp_overlap 688655, overlap 688655 688652 GTTGGTGAAATGAGA TGTCACTTA ACGGG TAAGTGACA TCTTTTCATTATGAC VFMJ11_0655 689965 - 688688 - | hypothetical protein VFMJ11_0656 690371 - 689991 - | endoribonuclease L-PSP, putative TERM 801 690077 - 690091 + g 71 -5 -4.62002 | overlap 690068 AGCGAGCAGGGCAGT CTGTTT TGA AAACGG TTTTGTATACTTCGT TERM 802 690253 - 690272 + g 76 -10.8 -2.7419 | opp_overlap 690248 CCCTCAACCACTTTA CCAGTAGA ACCA TCTACTGG TAATTGACCTGATGT TERM 803 690892 - 690902 + G 74 -4 -5.15167 | CCCAGCCATGTATTT GTTT CAA AAAC TTTTTATTAATACTC VFMJ11_0657 690668 - 691972 + | inner membrane transport protein YhaO TERM 804 692037 - 691990 - T 100 -16.1 -3.56092 | gap 1, opp_overlap 691990 692003, overlap 691978 691993 692003 GTATTATTTTCTAAA TAACATAAAAAAAGCCCAGAGA TATCC TCTCTGGGCTTTTTCTAT-TTA TGTTGTTACTTATTT TERM 805 691990 - 692037 + T 100 -13.9 -3.53745 | gap 1, opp_overlap 691978 691990 691993 692003, overlap 692003 GTATTATTTTCTAAA TAACATAAAAAAAGCCCAGAGA TATCC TCTCTGGGCTTTTTCTAT-TTA TGTTGTTACTTATTT TERM 806 692035 - 691993 - T 100 -15.9 -3.91716 | opp_overlap 691990 692003, overlap 691990 692003 TTATTTTCTAAATAA CATAAAAAAAGCCCAGAGA TATCC TCTCTGGGCTTTTTCTATT TATGTTGTTACTTAT TERM 807 692003 - 692025 + T 100 -13.5 -5.26155 | opp_overlap 691993 691990 692003, overlap 691990 AATAACATAAAAAAA GCCCAGAGA TATCC TCTCTGGGC TTTTTCTATTTATGT TERM 808 692025 - 692003 - T 100 -13.5 -5.86465 | opp_overlap 692003 691990, overlap 691993 691990 AATAACATAAAAAAA GCCCAGAGA TATCC TCTCTGGGC TTTTTCTATTTATGT fghA 692885 - 692043 - | S-formylglutathione hydrolase TERM 809 692987 - 692975 - R 70 -4.1 -4.64861 | GTGCTTTAAAATAAA GAATG AAA CACTC AGTAAGATTATCTAT TERM 810 693070 - 693095 + r 79 -5.5 -5.05712 | gap 1, opp_overlap 693064 693070 693072, overlap 693072 AGATCAAAAGTAGAA TA-GGGGCTAGA GTA TCTAACCCCTTA TTTTTACTTATTTAT TERM 811 693094 - 693070 - R 81 -9.3 -3.71148 | opp_overlap 693070 693072, overlap 693064 693072 AGATCAAAAGTAGAA TAGGGGCTAGA GTA TCTAACCCCTT ATTTTTACTTATTTA TERM 812 693072 - 693092 + r 100 -9.7 -4.57543 | opp_overlap 693070 693064 693072, overlap 693070 ATCAAAAGTAGAATA GGGGCTAGA GTA TCTAACCCC TTATTTTTACTTATT TERM 813 693092 - 693072 - R 90 -11.9 -3.42359 | opp_overlap 693072 693070, overlap 693070 693064 ATCAAAAGTAGAATA GGGGCTAGA GTA TCTAACCCC TTATTTTTACTTATT VFMJ11_0659 694251 - 693103 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 814 694284 - 694304 + H 80 -2.6 -5.73978 | overlap 694285 ATATTCGGATGAGCA GTCAACTA AAGCG TAGTTGAG TTTTTTATTTCTGCT VFMJ11_0660 694529 - 694903 + | hypothetical protein VFMJ11_0661 694964 - 695563 + | thiol:disulfide interchange protein DsbA TERM 815 695593 - 695623 + T 74 -9.1 -3.08471 | opp_overlap 695599, overlap 695599 ACAAACTTGAGATAC AAAAAAGCCCTCG CAGAT TGAGGGCTTTTTA TTGCATGACATTATG TERM 816 695617 - 695599 - T 93 -7.4 -5.4251 | opp_overlap 695599 695593 TTGAGATACAAAAAA GCCCTC GCAGATT GAGGGC TTTTTATTGCATGAC TERM 817 695599 - 695617 + T 90 -8.1 -5.10461 | opp_overlap 695599, overlap 695593 TTGAGATACAAAAAA GCCCTCG CAGAT TGAGGGC TTTTTATTGCATGAC VFMJ11_0662 696911 - 695634 - | proton/sodium-glutamate symport protein TERM 818 697032 - 697000 - R 100 -11.5 -5.31877 | opp_overlap 697000 697004, overlap 697004 ATGCAGTATAAAAAA TAAAGTCCGCTAAAT TAA ATTTAACGGACTTTG ATATTAATTGAATTA TERM 819 697000 - 697032 + r 82 -11.5 -2.55784 | opp_overlap 697000 697004, overlap 697004 ATGCAGTATAAAAAA TAAAGTCCGCTAAAT TAA ATTTAACGGACTTTG ATATTAATTGAATTA TERM 820 697028 - 697004 - R 100 -12.3 -5.1471 | opp_overlap 697000 697004, overlap 697000 AGTATAAAAAATAAA GTCCGCTAAAT TAA ATTTAACGGAC TTTGATATTAATTGA TERM 821 697004 - 697028 + r 87 -10.1 -3.97209 | opp_overlap 697004 697000, overlap 697000 AGTATAAAAAATAAA GTCCGCTAAAT TAA ATTTAACGGAC TTTGATATTAATTGA VFMJ11_0663 698238 - 697090 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 822 699112 - 699123 + G 76 -4.4 -5.0916 | AGGGTTAGGTATTGT TCAG CTGC CTGA TTTTTATGTTCAAGA VFMJ11_0664 698414 - 699286 + | transcriptional regulator, LysR family VFMJ11_0665 699287 - 699811 + | tRNA-specific adenosine deaminase TERM 823 699883 - 699904 + T 100 -8 -5.8901 | opp_overlap 699883 ACGTTATTCTAAAAA GGCAAGCC ATTACA GGTTTGCC TTTTTTCTTTTGTAT TERM 824 699904 - 699883 - T 74 -5.8 -4.62336 | opp_overlap 699883 ACGTTATTCTAAAAA GGCAAGCC ATTACA GGTTTGCC TTTTTTCTTTTGTAT VFMJ11_0666 700080 - 699922 - | hypothetical protein TERM 825 700134 - 700109 - R 74 -3.3 -5.24551 | TTAAACGAATAAAAA GCGCGTT ATTGTATTTGTA AACGCGC ATAAAAATAAATGAT VFMJ11_0667 701711 - 700224 - | amino-acid abc transporter binding protein TERM 826 701456 - 701437 - G 71 -5 -4.5123 | AACGCAGGAAATAAA CCTGAATA AGTA TATGCAGG AGTGATCTCAAGTTT VFMJ11_0668 701830 - 701976 + | hypothetical protein TERM 827 703457 - 703482 + G 79 -6.9 -4.53034 | GCATCTTCAATGGAT TCTGGTTCTTC TTCT GAAGATCTAGA TTTTGCTTCTGTACA purL 702083 - 705994 + | phosphoribosylformylglycinamidine synthase TERM 828 706007 - 706036 + F 72 -8.1 -3.47526 | gap 1, opp_overlap 706011 706012, overlap 706005 706011 706012 706032 TGATTTAACGCATAA TTAAG-GTGCATTT ATA AAATGCACTCTTGA TGTTTAAGTTAATAA TERM 829 706012 - 706030 + F 83 -10.4 -3.30239 | opp_overlap 706011 706012, overlap 706011 706007 706005 TAACGCATAATTAAG GTGCATTT ATA AAATGCAC TCTTGATGTTTAAGT TERM 830 706030 - 706012 - f 78 -10.4 -2.6796 | opp_overlap 706012 706011 706007 706005, overlap 706011 TAACGCATAATTAAG GTGCATTT ATA AAATGCAC TCTTGATGTTTAAGT TERM 831 706165 - 706188 + F 100 -9.6 -5.80364 | opp_overlap 706165 706160 TCTTTTCAAATAAAA CCGTTGAAGT TTAG GCTTCAGCGG TTTTTTTGTTAGAAT TERM 832 706188 - 706165 - f 83 -6.7 -4.86731 | opp_overlap 706165, overlap 706160 TCTTTTCAAATAAAA CCGTTGAAG TTTAGG CTTCAGCGG TTTTTTTGTTAGAAT VFMJ11_0670 706235 - 706750 + | 23S rRNA methyltransferase VFMJ11_0671 706820 - 707359 + | ABC-type multidrug transport system, ATPase and permease component TERM 833 707380 - 707402 + F 95 -8.5 -5.68023 | opp_overlap 707380 GTTCTAAATGTAAAA TGACTGGTG GTTTA TACCAGTCA TTTTTTTAGTTGTGC TERM 834 707402 - 707380 - f 81 -7.8 -4.35524 | opp_overlap 707380 GTTCTAAATGTAAAA TGACTGGT GGTTTAT ACCAGTCA TTTTTTTAGTTGTGC VFMJ11_0672 707595 - 707915 + | hypothetical protein TERM 835 707925 - 707975 + T 89 -8.6 -4.39877 | gap 1, opp_overlap 707931 707935 707942, overlap 707931 707935 707942 GAGTAATCTTCACAA TAGAATGAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC-TACTA TTTATTGATTATTCA TERM 836 707970 - 707931 - T 81 -10.9 -2.84745 | opp_overlap 707931 707925 707935 707942, overlap 707935 707942 TCTTCACAATAGAAT GAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC TACTATTTATTGATT TERM 837 707931 - 707970 + T 88 -13.1 -2.96234 | opp_overlap 707931 707935 707942, overlap 707925 707935 707942 TCTTCACAATAGAAT GAAATAAAAAAGGCGCT AATTAA AGCGCCTTTTTTGTGTC TACTATTTATTGATT TERM 838 707966 - 707935 - T 100 -10.3 -4.09827 | opp_overlap 707931 707925 707935 707942, overlap 707931 707942 CACAATAGAATGAAA TAAAAAAGGCGCT AATTAA AGCGCCTTTTTTG TGTCTACTATTTATT TERM 839 707935 - 707966 + T 87 -12.5 -3.05294 | opp_overlap 707935 707931 707942, overlap 707931 707925 707942 CACAATAGAATGAAA TAAAAAAGGCGCT AATTAA AGCGCCTTTTTTG TGTCTACTATTTATT TERM 840 707942 - 707959 + T 93 -8.4 -5.43414 | opp_overlap 707935 707931 707942, overlap 707935 707931 707925 GAATGAAATAAAAAA GGCGCT AATTAA AGCGCC TTTTTTGTGTCTACT TERM 841 707959 - 707942 - T 93 -8.4 -5.72053 | opp_overlap 707942 707935 707931 707925, overlap 707935 707931 GAATGAAATAAAAAA GGCGCT AATTAA AGCGCC TTTTTTGTGTCTACT VFMJ11_0673 710517 - 707977 - | endochitinase VFMJ11_0674 710770 - 711255 + | transcription elongation factor TERM 842 711287 - 711272 - T 95 -9 -5.14563 | opp_overlap 711272 TTTTGGATCAAAAAA GAGAGG CGAA CCTCTC TTTTAAAATTTGATG TERM 843 711272 - 711287 + T 85 -9 -4.25074 | opp_overlap 711272 TTTTGGATCAAAAAA GAGAGG CGAA CCTCTC TTTTAAAATTTGATG VFMJ11_0675 712382 - 711315 - | succinylglutamate desuccinylase/aspartoacylase family protein TERM 844 712111 - 712130 + g 74 -5 -4.72863 | opp_overlap 712111 712109 AAGACATTAACAATA GGCACA GCAATCAG TGTGCC TTTTAATTTCTTTGG TERM 845 712229 - 712244 + g 72 -10.4 -2.54634 | overlap 712228 TTACCATCAGGATTG GGCCAG CATG CTGGCC GTTAATGATCTCAAC TERM 846 712351 - 712362 + g 85 -3 -5.82388 | opp_overlap 712351 GAGTGCGTTAATAAT TCAA ACGC TTGA TTTTTTTTAGCCTTT VFMJ11_0676 713274 - 712369 - | ribosomal protein S6 modification protein VFMJ11_0677 713714 - 713274 - | ribosomal protein S6 modification protein TERM 847 714078 - 714048 - H 74 -2.1 -5.4182 | gap 1, opp_overlap 714056 714068, overlap 714052 AATTATAAAGAAAAA TG-AATGACTATAA TTCC TTATATTCATTGCA GAATAGTGAATATTG VFMJ11_0678 714206 - 715552 + | transporter TERM 848 715605 - 715627 + T 100 -9.9 -5.13016 | opp_overlap 715605 TAAAATATAAAAAAA GCCAGCATG TTAAT TATGCTGGC TTTTTACTTTTGATT TERM 849 715627 - 715605 - T 100 -9.2 -5.9362 | opp_overlap 715605 TAAAATATAAAAAAA GCCAGCAT GTTAATT ATGCTGGC TTTTTACTTTTGATT VFMJ11_0679 715840 - 715652 - | hypothetical protein VFMJ11_0680 716046 - 715840 - | hypothetical protein TERM 850 716147 - 716118 - R 100 -10.2 -5.60864 | opp_overlap 716118 CATAGATCAAAAAAA GCTGAAAAACCT AGGGGG AAGTTTTTCAGC TTTAGAGCAAAGATA TERM 851 716118 - 716147 + r 73 -8 -3.53224 | opp_overlap 716118 CATAGATCAAAAAAA GCTGAAAAACCT AGGGGG AAGTTTTTCAGC TTTAGAGCAAAGATA VFMJ11_0681 717066 - 716173 - | N-acetylneuraminate lyase (NALase) TERM 852 717525 - 717546 + G 71 -3.7 -4.84761 | CACAGATTGTAAATG CGGGTGATG CAAC CATTATTCG TTTTTGTCGAACTCT VFMJ11_0682 717359 - 718237 + | transcriptional regulator, RpiR family TERM 853 718294 - 718256 - T 78 -6.9 -4.4009 | gap 1, opp_overlap 718260 718262, overlap 718262 TTTGACTGTATAAAA TTATAAGGCCGTGAATAT ACAC ATATTCACGGCCT-ATTT TTTATTTCTGATAAA TERM 854 718260 - 718291 + T 100 -14.6 -5.73978 | opp_overlap 718256 718262, overlap 718262 ACTGTATAAAATTAT AAGGCCGTGAATAT ACAC ATATTCACGGCCTA TTTTTTATTTCTGAT TERM 855 718262 - 718289 + T 100 -17.2 -4.49311 | opp_overlap 718256 718262, overlap 718260 TGTATAAAATTATAA GGCCGTGAATAT ACAC ATATTCACGGCC TATTTTTTATTTCTG TERM 856 718289 - 718262 - T 100 -17.2 -3.72405 | opp_overlap 718262 718260, overlap 718256 TGTATAAAATTATAA GGCCGTGAATAT ACAC ATATTCACGGCC TATTTTTTATTTCTG nagA_1 719456 - 718296 - | N-acetylglucosamine-6-phosphate deacetylase VFMJ11_0684 719684 - 720421 + | bifunctional enzyme NanE/nanK VFMJ11_0685 720418 - 721293 + | putative N-acetylmannosamine kinase TERM 857 722185 - 722169 - g 73 -2.3 -5.23316 | opp_overlap 722176 GATGAGACTAAAAAA GCATT GATCACT AATGC GAAATTAGTGGCTTG VFMJ11_0686 721353 - 722870 + | sodium-glucose/galactose cotransporter TERM 858 722886 - 722909 + F 93 -10.4 -4.08394 | TTGATAATTGAGTTT GAGCCTTTGT ATTT ATAAAGGCTC TTTTAAGGACAGTGT VFMJ11_0687 722926 - 723396 + | hypothetical cytosolic protein TERM 859 723413 - 723454 + T 100 -11.2 -4.40333 | opp_overlap 723413 TAATTGAAAATAAAA GCCCTGATACGTACTTA-GT TATG GCATAAGTA-GTATCAGGGC TTTGTCTTATTTAGG TERM 860 723454 - 723413 - T 100 -11.2 -5.13343 | gap 1, opp_overlap 723413 TAATTGAAAATAAAA GCCCTGATACGTACTTA GTTATGGCA TAAGTA-GTATCAGGGC TTTGTCTTATTTAGG ureG 724134 - 723514 - | urease accessory protein UreG VFMJ11_0689 724809 - 724144 - | urease accessory protein UreF VFMJ11_0690 725312 - 724821 - | urease accessory protein UreE ureC 727078 - 725375 - | urease, alpha subunit ureB 727434 - 727078 - | urease, beta subunit ureA 727747 - 727445 - | urease, gamma subunit TERM 861 727706 - 727723 + g 74 -4.1 -5.13344 | TATCATGCCAGCAGA GGCAAGC AGCA GTTTGTC TTTTTCTCTTGGTGT ureD 728627 - 727764 - | urease accessory protein UreD TERM 862 728046 - 728060 + g 86 -7.8 -4.9448 | overlap 728042 CATGGGATAGTGCCT CATGCC TGC GGCGTG TTTTATTTCATCAAT TERM 863 728229 - 728239 + g 79 -5.4 -4.86621 | GGCGTCTTTATGAAG CTCA ACT TGAG TTTTTAATTGGGCCT VFMJ11_0695 729584 - 728997 - | NikE VFMJ11_0697 730170 - 729586 - | oligopeptide transport ATP-binding protein OppD TERM 864 730264 - 730280 + Gr 71 -3.7 -4.9181 | opp_overlap 730264, overlap 730250 TGATAGGTTGGAAAA CAAAGGT ATT GTCTTTG TTTTTAATCTTATCT VFMJ11_0696 730169 - 730330 + | hypothetical protein VFMJ11_0698 731092 - 730310 - | oligopeptide transport system permease protein OppC VFMJ11_0699 732094 - 731111 - | oligopeptide transport system permease protein OppB TERM 865 731646 - 731662 + g 71 -9.5 -2.76442 | opp_overlap 731624 731646, overlap 731624 731643 CAAAAACTTGGAATA GCGTTAA TCA TTAACGC TAATTGGGTGATGAT TERM 866 731662 - 731646 - G 73 -9.5 -3.10589 | opp_overlap 731624 731646 731643, overlap 731624 CAAAAACTTGGAATA GCGTTAA TCA TTAACGC TAATTGGGTGATGAT VFMJ11_0700 733755 - 732085 - | oligopeptide-binding protein OppA TERM 867 734077 - 734051 - R 72 -4.7 -4.73297 | gap 1, overlap 734066 TAATCAAGAAATAAA TCAATGAAAGTA AAAT TA-TTTCATTGA TATAAAAAAGGCTAA TERM 868 734108 - 734087 - R 100 -11.7 -5.38047 | opp_overlap 734087 CATTGATATAAAAAA GGCTAAGTA AATC TACTTAGCC TTTGGTATTTAATGC TERM 869 734087 - 734108 + r 93 -11.7 -4.02719 | opp_overlap 734087 CATTGATATAAAAAA GGCTAAGTA AATC TACTTAGCC TTTGGTATTTAATGC proS 735848 - 734133 - | prolyl-tRNA synthetase TERM 870 735006 - 735019 + g 72 -3.1 -5.08824 | opp_overlap 735006 AGATGCTTTAACAAA CAGTG TTTT TACTG TTTTTTCAATCGCAA TERM 871 735431 - 735412 - G 76 -7.2 -4.15565 | gap 1, opp_overlap 735423 CGCATTACGCCAAAA CGTGGACGA CGT TCGTC-ACG GAATTTAGTTTGAAT VFMJ11_0702 736710 - 735997 - | protein YaeB TERM 872 736758 - 736737 - R 100 -10.9 -5.1675 | opp_overlap 736737 TCAGGCATTAAAAAA GGTTGACGC TCTC ACGTCAACC TTTTGTGGAATAACT TERM 873 736737 - 736758 + r 100 -10.2 -4.40358 | opp_overlap 736737 TCAGGCATTAAAAAA GGTTGACG CTCTCA CGTCAACC TTTTGTGGAATAACT VFMJ11_0703 737599 - 736790 - | D-methionine-binding lipoprotein MetQ VFMJ11_0704 738315 - 737638 - | D-methionine transport system permease protein MetI TERM 874 737862 - 737883 + g 73 -5.9 -4.52703 | AGTTTAAAATAGTTG GTAGTGCTT CTGG AAGCAGTAC TTTTGTAATGATTTG metN 739339 - 738305 - | D-methionine ABC transporter, ATP-binding protein TERM 875 739394 - 739407 + H 78 -2.4 -5.63645 | opp_overlap 739394 AAAGGTTACAAAACC TGAG CAATCT CTCA TTTTTTATGTTTTAC TERM 876 739700 - 739690 - g 73 -5.4 -4.57205 | opp_overlap 739690, overlap 739692 739693 AAAAACTCAAAGAAA TAGG TTA CCTA TTAGTATTGGTAACT VFMJ11_0706 739563 - 740114 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 877 740136 - 740177 + F 83 -11.1 -3.07895 | opp_overlap 740145, overlap 740145 TCGTTAAAGAGAATA TAAATGAAACGCCTATAGA GAAA TCTGTGGGCGTTTTTTTTA TGTGTTAACAATGAA TERM 878 740145 - 740168 + F 100 -9.6 -6.08563 | opp_overlap 740145, overlap 740136 AGAATATAAATGAAA CGCCTATAGA GAAA TCTGTGGGCG TTTTTTTTATGTGTT VFMJ11_0707 740331 - 740498 + | hypothetical protein VFMJ11_0708 740792 - 741820 + | ABC transporter, permease protein VFMJ11_0709 741823 - 742875 + | inner membrane ABC transporter permease protein YejE VFMJ11_0710 742909 - 744747 + | oligopeptide-binding protein OppA TERM 879 744804 - 744781 - f 93 -9.6 -4.26202 | opp_overlap 744786, overlap 744783 ATAGCCAGCAATAAA GACTAGGCGA GGGA TCGCCTAGTG TAAATAATAATAAAA TERM 880 744802 - 744783 - f 91 -12.2 -3.72775 | opp_overlap 744786, overlap 744781 AGCCAGCAATAAAGA CTAGGCGA GGGA TCGCCTAG TGTAAATAATAATAA TERM 881 745457 - 745443 - g 77 -5 -4.89009 | overlap 745436 AGAGTTAATGAAAAA GCTTCA AGA TGAAAC GGGTATGTCGATCAT VFMJ11_0711 744835 - 745839 + | dipeptide transport ATP-binding protein DppD VFMJ11_0712 745836 - 746804 + | oligopeptide transport ATP-binding protein AppF VFMJ11_0713 746882 - 747211 + | lipoprotein, putative TERM 882 747265 - 747290 + T 79 -8.4 -4.04188 | opp_overlap 747265 TAGATGAGATAAAAA TGCCCATATA TTCATT TGTATGGGCA TTATTGTATTTAGCT TERM 883 747290 - 747265 - T 83 -6.2 -5.02502 | opp_overlap 747265 TAGATGAGATAAAAA TGCCCATATA TTCATT TGTATGGGCA TTATTGTATTTAGCT VFMJ11_0714 747913 - 747305 - | hypothetical membrane spanning protein glyA 748313 - 749563 + | serine hydroxymethyltransferase TERM 884 749611 - 749589 - f 87 -10.6 -3.77484 | opp_overlap 749589, overlap 749582 TATTAAAATGTTAAA GGCTAGCC AGTAATG GGCTAGCC TTTTTTATTGATAGT TERM 885 749589 - 749611 + F 100 -10.6 -5.52023 | opp_overlap 749589 749582 TATTAAAATGTTAAA GGCTAGCC AGTAATG GGCTAGCC TTTTTTATTGATAGT TERM 886 750424 - 750392 - g 100 -6.3 -5.70522 | opp_overlap 750392, overlap 750396 AAGAAGAAGAAAAAA CGGATGAAGTAGGTA AAA CACCTAGTTCACACG TTGATGCTGAAATTG TERM 887 750978 - 751008 + G 76 -3.3 -5.27023 | gap 1, opp_overlap 750997 GCTAACTGCTGCTAT CGATGCTGAGTTAC AACA GCAACG-AGCATCG TTTTATTTTTCAGAT TERM 888 753675 - 753644 - g 71 -3.9 -4.88918 | gap 1, opp_overlap 753656 CTAGCTCAAATAAAA TACCAACAAATGCA ATTGA TG-ATTGGTTGGTA TGGCACGAAGTTGGT VFMJ11_0716 749866 - 754314 + | inner membrane lipoprotein TERM 889 754335 - 754361 + T 100 -19.5 -5.19328 | opp_overlap 754335 AGTCATAATAAAAAA GCCCCCGAACC ATCAC GGTTCGGGGGC TTTTTATTGTCAGCT TERM 890 754361 - 754335 - T 100 -20.2 -5.56673 | opp_overlap 754335 AGTCATAATAAAAAA GCCCCCGAACCA TCA CGGTTCGGGGGC TTTTTATTGTCAGCT VFMJ11_0717 754736 - 754410 - | lipoprotein, putative VFMJ11_0718 756809 - 754821 - | methyl-accepting chemotaxis protein TERM 891 756927 - 756938 + H 77 -5.8 -4.78237 | opp_overlap 756926 AATGAAGGGACATAG GCAG GCAT CTGC TTTTCTTGTACACTA nrdR 756979 - 757428 + | transcriptional regulator NrdR ribD 757457 - 758548 + | riboflavin biosynthesis protein RibD ribE_1 758552 - 759208 + | riboflavin synthase, alpha subunit TERM 892 759605 - 759593 - g 84 -7.7 -4.68593 | opp_overlap 759592 GGCAGTAGCTAAAAA TGCAG TTG CTGCA GATTTAGTTCAACCG ribBA 759249 - 760358 + | bifunctional riboflavin biosynthesis protein RibBA TERM 893 760401 - 760368 - f 72 -6.1 -4.27846 | gap 1, opp_overlap 760368 760367, overlap 760362 760370 760372 760373 AAATAAAAGCATAAA TATAT-GGCCCTATTC GAT GAGTAGGGCCTAAATA ATTAGATATTTGTCA TERM 894 760397 - 760370 - f 71 -7.8 -3.70401 | gap 1, opp_overlap 760368 760367, overlap 760362 760368 760372 760373 ATAAAAGCATAAATA TATGGCCCTATTC GAT GAGTAGGGCC-TA AATAATTAGATATTT TERM 895 760396 - 760372 - f 75 -8.5 -3.40925 | opp_overlap 760368 760367, overlap 760362 760370 760368 760373 AAAAGCATAAATATA TGGCCCTATTC GAT GAGTAGGGCCT AAATAATTAGATATT TERM 896 760395 - 760373 - f 84 -12 -2.62928 | opp_overlap 760368 760367, overlap 760372 760370 760368 AAAGCATAAATATAT GGCCCTATTC GAT GAGTAGGGCC TAAATAATTAGATAT TERM 897 760761 - 760777 + G 71 -6.5 -4.27259 | overlap 760762 TTGGGTTCTGTTATT CGTGGTG GCA CACCACA TTTTGACTATGTATG TERM 898 760762 - 760776 + G 75 -10 -3.15632 | overlap 760761 TGGGTTCTGTTATTC GTGGTG GCA CACCAC ATTTTGACTATGTAT ribH 760512 - 760982 + | 6,7-dimethyl-8-ribityllumazine synthase nusB 760982 - 761449 + | transcription antitermination factor NusB TERM 899 761481 - 761500 + F 89 -7.1 -5.28176 | opp_overlap 761481 TAATTAAATCGTAAA GGTCAGC CTCGTT GCTGGCC TTTTTTATAACTAAA TERM 900 762451 - 762427 - g 76 -10.9 -2.69319 | opp_overlap 762434, overlap 762426 762434 AATTGGTGAGATAAT TGATAAACCAT TTA ATGGTTTACCA GATAGTGTACAATTG thiL 761534 - 762532 + | thiamine-monophosphate kinase pgpA 762625 - 763032 + | phosphatidylglycerophosphatase A VFMJ11_0727 763032 - 764150 + | autoinducer 2-binding periplasmic protein LuxP TERM 901 764609 - 764578 - g 100 -6.2 -5.89827 | gap 1, opp_overlap 764581 AATCATTAAAAAAAA TCTTAATATTAACAC TTG GTATTA-TATTAAGA TGGAAGATCCTTTAT TERM 902 764624 - 764634 + G 85 -5.4 -5.26875 | ATGGAAGATCCTTTA TCAG ACG CTGA TTTTTTAATTAGAAA TERM 903 765234 - 765224 - g 71 -6.8 -3.97602 | GAAGACAGTTATAAA GCTC AAA GAGC GGCAGAGAAATTAGC TERM 904 765407 - 765368 - g 85 -6.6 -5.17744 | gap 1, opp_overlap 765367 765371 AGAGAGCAACAAAAA CAAGTGAATATTCTCCATC AAG GA-GGAGAGCATTTACTTG CTGTATTAAATGACA VFMJ11_0728 764153 - 766387 + | autoinducer 2 sensor kinase/phosphatase LuxQ VFMJ11_0729 766666 - 766388 - | hypothetical protein TERM 905 766603 - 766630 + g 77 -6.5 -4.48743 | gap 1 GAGAAGTGACTTTGA CATCAACA-CTA TGGGT TAGCTGTTGATG TTTATTTAGCATTTT VFMJ11_0730 766739 - 767089 + | antibiotic biosynthesis monooxygenase TERM 906 767121 - 767104 - T 100 -11.3 -5.48623 | opp_overlap 767104 AAATATAAATAAAAA TGCCACC AAAC GGTGGCA TTGTTTTAGGAAACT TERM 907 767104 - 767121 + T 100 -11.3 -4.17316 | opp_overlap 767104 AAATATAAATAAAAA TGCCACC AAAC GGTGGCA TTGTTTTAGGAAACT TERM 908 767191 - 767147 - T 77 -9.5 -3.28205 | opp_overlap 767158, overlap 767158 AAACTAAGATTAAGA TGGGCATGAAATTAGAGATCA AGG TAATCTCTAATTTGTTGCTCA ATGCCATTTGAATCA TERM 909 767180 - 767158 - T 79 -8.6 -3.74519 | opp_overlap 767158, overlap 767147 AAGATGGGCATGAAA TTAGAGATCA AGG TAATCTCTAA TTTGTTGCTCAATGC TERM 910 767158 - 767180 + T 71 -6.4 -4.258 | opp_overlap 767147 767158 AAGATGGGCATGAAA TTAGAGATCA AGG TAATCTCTAA TTTGTTGCTCAATGC dxs 769041 - 767158 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 911 768173 - 768183 + g 71 -6.8 -4.06778 | GGATCTTTCTCAGCA GGCT CAT AGCC TTTACCTTTTTTCGT VFMJ11_0732 769959 - 769063 - | geranyltranstransferase (Farnesyl-diphosphate synthase) TERM 912 769833 - 769851 + g 75 -10.4 -3.22409 | opp_overlap 769833 769837, overlap 769827 769837 GTTTACCACCTAACA GCAATGAA TAT TTCATTGC TTCAGTTAGTGGTTG TERM 913 769851 - 769833 - G 75 -10.4 -3.10796 | opp_overlap 769833 769827 769837, overlap 769837 GTTTACCACCTAACA GCAATGAA TAT TTCATTGC TTCAGTTAGTGGTTG xseB 770194 - 769952 - | exodeoxyribonuclease VII, small subunit VFMJ11_0734 770473 - 771237 + | chemotaxis protein PomA VFMJ11_0735 771253 - 772182 + | flagellar motor protein TERM 914 772248 - 772225 - f 100 -12.5 -4.14175 | opp_overlap 772225 AAGATAATAATGAAA GGCGAGTTG AATTAG CAACTCGCC TTTTTTTTCGGTATA TERM 915 772225 - 772248 + F 100 -12.5 -5.83822 | opp_overlap 772225 AAGATAATAATGAAA GGCGAGTTG AATTAG CAACTCGCC TTTTTTTTCGGTATA thiI 772342 - 773790 + | thiamine biosynthesis/tRNA modification protein ThiI TERM 916 773816 - 773837 + T 100 -14.5 -5.4251 | opp_overlap 773816 TGCAGCATTTAAAAA GGGCGTTGA TTAT TCAACGCCC TTTTTTGTATATAAC TERM 917 773837 - 773816 - T 100 -14.5 -4.68593 | opp_overlap 773816 TGCAGCATTTAAAAA GGGCGTTGA TTAT TCAACGCCC TTTTTTGTATATAAC VFMJ11_0737 774452 - 773862 - | protein ThiJ panE 775402 - 774449 - | 2-dehydropantoate 2-reductase TERM 918 775426 - 775400 - G 100 -15.2 -5.24129 | opp_overlap 775404 GTTTGCTACAAAAAA CAAAGGCGCTCA TAG TGAGCGCCTTAG TAAAATAGATATTCT TERM 919 775404 - 775422 + r 95 -14.6 -3.16881 | opp_overlap 775400 GCTACAAAAAACAAA GGCGCTCA TAG TGAGCGCC TTAGTAAAATAGATA VFMJ11_0739 776166 - 775450 - | conserved outer membrane protein TERM 920 775488 - 775506 + g 74 -6 -4.31433 | AGATGATAGCGTCAT CTAGATCA CCT TGACCTAG TTTATTATCAGCATA TERM 921 776351 - 776338 - R 77 -5.3 -4.90302 | opp_overlap 776338 GACCAATAAAATAAA GTGAT CAAT ATCAC TCACTTGACAAATCT TERM 922 776398 - 776416 + r 95 -13.2 -3.73072 | opp_overlap 776398 AACAAAAACAAAAAA GCCTCCTA AAT TAGGAGGC TTTGGTAGCACAGTT TERM 923 776416 - 776398 - R 100 -13.2 -6.01725 | opp_overlap 776398 AACAAAAACAAAAAA GCCTCCTA AAT TAGGAGGC TTTGGTAGCACAGTT VFMJ11_0740 777791 - 776448 - | AmpG protein TERM 924 777324 - 777334 + g 84 -6.8 -4.93318 | CACCGCCATTGCTGA TGCC TGA GGCA TTTTTGTGGATTCTG TERM 925 777851 - 777836 - R 84 -6.8 -5.1104 | opp_overlap 777836 777848, overlap 777840 AAATAGATAGAAAAA GCAGCC CGAA AGCTGC TTTAGAGTAGTGCTA VFMJ11_0741 778438 - 777878 - | peptidyl-prolyl cis-trans isomerase VFMJ11_0742 779007 - 778438 - | lipoprotein VFMJ11_0743 780170 - 779022 - | putative ribosomal RNA small subunit methyltransferase D TERM 926 780307 - 780293 - g 74 -4.2 -5.16151 | opp_overlap 780299, overlap 780296 CAAATTGAACAAAAA TTACGC GAA GCGTTA GCGCCTTCTTATCTT VFMJ11_0744 780266 - 780580 + | BolA protein TERM 927 781599 - 781588 - g 78 -3 -5.40072 | opp_overlap 781588 TTCTTCTCAAAAAAA TGTT GAAG AACA TGTATTTGATGGCCC nqrA 780974 - 782314 + | NADH:ubiquinone oxidoreductase, A subunit nqrB 782318 - 783562 + | NADH:ubiquinone oxidoreductase, B subunit nqrC 783552 - 784319 + | NADH:ubiquinone oxidoreductase, C subunit nqrD 784319 - 784951 + | NADH:ubiquinone oxidoreductase, D subunit nqrE 784959 - 785555 + | NADH:ubiquinone oxidoreductase, E subunit nqrF 785585 - 786811 + | NADH:ubiquinone oxidoreductase, F subunit TERM 928 786860 - 786829 - f 72 -5.8 -4.33621 | opp_overlap 786833, overlap 786831 786832 TATTGAAGTAAGAAA TATTGGCTGACTCA GTAT TGAGTCAGCCTTTT TTCGTATTTATGGTC TERM 929 786858 - 786831 - f 75 -8.4 -3.7642 | opp_overlap 786833, overlap 786829 786832 TTGAAGTAAGAAATA TTGGCTGACTCA GTAT TGAGTCAGCCTT TTTTCGTATTTATGG TERM 930 786857 - 786832 - f 84 -11.9 -2.85129 | opp_overlap 786833, overlap 786831 786829 TGAAGTAAGAAATAT TGGCTGACTCA GTAT TGAGTCAGCCT TTTTTCGTATTTATG TERM 931 786833 - 786856 + F 100 -15.4 -5.34055 | opp_overlap 786832 786831 786829 GAAGTAAGAAATATT GGCTGACTCA GTAT TGAGTCAGCC TTTTTTCGTATTTAT TERM 932 787770 - 787752 - g 77 -6 -4.61633 | opp_overlap 787751 787749 787752 787754 ATATACTTTGAAAAA GAGGGTAT TCG ATACTCTC ATATTATTAATCCAA VFMJ11_0751 786969 - 788003 + | thiamine biosynthesis lipoprotein ApbE VFMJ11_0752 788066 - 788248 + | hypothetical protein TERM 933 788276 - 788296 + F 100 -9.7 -5.30616 | opp_overlap 788276 AATTCCATTTTTAAA CAGCACCTA TTA TTGGTGCTG TTTTTATTTGAATAA TERM 934 788296 - 788276 - f 82 -9.7 -3.5764 | opp_overlap 788276 AATTCCATTTTTAAA CAGCACCTA TTA TTGGTGCTG TTTTTATTTGAATAA TERM 935 788332 - 788355 + F 88 -7.6 -4.91459 | AGTTCAAAGCTATTA TTAACTGTGT TTTT ATACAGTTAA TTTTTATGAGTATTG TERM 936 789301 - 789281 - g 76 -9.1 -3.76321 | AGGAATTAAAATTAA GTTTGCTGA TTT TCAACAAAC GACAATTGAACATGT VFMJ11_0753 788361 - 789458 + | DNA polymerase IV alr_1 789648 - 790859 + | alanine racemase TERM 937 790926 - 790945 + T 100 -13.6 -4.40184 | opp_overlap 790926 AGATAGTTAAAAAAA CGGTCAGC GTAT GCTGACCG TTTGTATTTAGTTAG TERM 938 790945 - 790926 - T 100 -13.6 -5.51402 | opp_overlap 790926 AGATAGTTAAAAAAA CGGTCAGC GTAT GCTGACCG TTTGTATTTAGTTAG VFMJ11_0755 792421 - 790967 - | aminoacyl-histidine dipeptidase TERM 939 792992 - 793018 + H 100 -14.6 -6.02914 | GGGCAGTTAATTCTC CGCCATTCAAAA CTA TTTTGGATGGCG TTTTTTTTATCTAAA VFMJ11_0756 793253 - 794545 + | inner membrane protein YicO VFMJ11_0757 794622 - 795041 + | xanthine phosphoribosyltransferase TERM 940 795066 - 795084 + F 93 -5.3 -6.09888 | opp_overlap 795066 AATATTTTAATAAAA TGACTCT TTTAT AGGGTCA TTTTTTTTATTCAAA VFMJ11_0758 795186 - 796424 + | esterase FrsA proB 796677 - 797702 + | glutamate 5-kinase proA 797717 - 798973 + | glutamate-5-semialdehyde dehydrogenase TERM 941 799043 - 798991 - T 81 -11 -2.94299 | gap 1, opp_overlap 799006, overlap 799006 CAATACTCTAAAGTA TCTATA-AACAAAAAAGGTTGACGC CAAA ACGTCAACCTTTTTTATTATTCAGA CCCTAGACTTTACTT TERM 942 799006 - 799027 + T 100 -10.2 -5.64873 | opp_overlap 798991 799006 TCTATAAACAAAAAA GGTTGACG CCAAAA CGTCAACC TTTTTTATTATTCAG TERM 943 799027 - 799006 - T 100 -10.9 -5.72622 | opp_overlap 799006, overlap 798991 TCTATAAACAAAAAA GGTTGACGC CAAA ACGTCAACC TTTTTTATTATTCAG lipA 800018 - 799053 - | lipoyl synthase lipB 800625 - 800011 - | lipoyltransferase TERM 944 800783 - 800817 + r 100 -9.5 -4.77165 | opp_overlap 800784 800786, overlap 800784 ATCAAAAGATCAAAA AGGTAGGCAATATTA TCAAC TAATATTGCCTATCA TTTTATTATAGAACC TERM 945 800816 - 800784 - R 100 -10.8 -4.98616 | opp_overlap 800784 800783, overlap 800786 TCAAAAGATCAAAAA GGTAGGCAATATTA TCAAC TAATATTGCCTATC ATTTTATTATAGAAC TERM 946 800784 - 800816 + r 93 -13 -3.45817 | opp_overlap 800784 800786, overlap 800783 TCAAAAGATCAAAAA GGTAGGCAATATTA TCAAC TAATATTGCCTATC ATTTTATTATAGAAC TERM 947 800814 - 800786 - R 84 -12 -2.72899 | opp_overlap 800784 800783, overlap 800784 AAAAGATCAAAAAGG TAGGCAATATTA TCAAC TAATATTGCCTA TCATTTTATTATAGA VFMJ11_0763 801092 - 800823 - | protein VV1_0282 TERM 948 801178 - 801203 + r 77 -9.1 -3.21474 | opp_overlap 801183, overlap 801183 TTAATCCAGTAAATT AAAAAGGCAAC CGAA GTTGCCTTTTA TGTATTCTAAGTTTA TERM 949 801198 - 801183 - R 95 -9 -5.01811 | opp_overlap 801178 801183 CCAGTAAATTAAAAA GGCAAC CGAA GTTGCC TTTTATGTATTCTAA TERM 950 801183 - 801198 + r 93 -9 -4.71223 | opp_overlap 801183, overlap 801178 CCAGTAAATTAAAAA GGCAAC CGAA GTTGCC TTTTATGTATTCTAA VFMJ11_0764 802402 - 801227 - | D-alanyl-D-alanine carboxypeptidase DacC TERM 951 801389 - 801399 + g 76 -3.2 -5.31275 | opp_overlap 801373 ACCTTTGTAGATAGG TGCT TCA AGCG TTTTTTCTAATACAA TERM 952 801669 - 801637 - G 77 -8.5 -3.7941 | opp_overlap 801658 801659 TAGTTCCCATAACAA CAGCAACTAAACGCA TTT TTCCTTCAGTTGCTG AACTTACTAGGTTGA TERM 953 802699 - 802728 + r 70 -2.2 -5.29385 | TATTTCTTCAATTCT TGGATGATAAAC GCTGAA GTATATTGTCCA TTTTTTGCTTCGATT VFMJ11_0765 803492 - 802683 - | lipoprotein TERM 954 803065 - 803089 + g 72 -4.3 -4.8066 | overlap 803081 TCATGAAAAGGTCCA CGGTCATTG ACTCGAA CAATGGCTG TTTTTCCATTGTCTT mrdB_1 804613 - 803492 - | rod shape-determining protein RodA TERM 955 804380 - 804358 - G 73 -5.7 -4.49937 | gap 1, overlap 804350 804378 CTAATAATAGGAAAA TCCCTATAGT GAAA AC-ATAGGGA GCAGCGGCTTCGTAG mrdA 806493 - 804613 - | penicillin-binding protein 2 VFMJ11_0768 806967 - 806497 - | hypothetical protein VFMJ11_0769 807289 - 806972 - | iojap family protein holA 808377 - 807343 - | DNA polymerase III, delta subunit TERM 956 808113 - 808133 + g 75 -10.5 -3.22306 | overlap 808108 808106 TTGTATGTGCGGTTG TCATTCCTG TAT CAGGAATGG TTAGCTCTATTATTT VFMJ11_0771 808997 - 808380 - | rare lipoprotein B TERM 957 809111 - 809088 - R 100 -13.2 -3.95674 | opp_overlap 809088 AAAATGGTTAAATAA GCACAAGCGG ATAT CCGCTTATGC TTTAGTAGAAAAGTA TERM 958 809088 - 809111 + r 90 -11 -3.72893 | opp_overlap 809088 AAAATGGTTAAATAA GCACAAGCGG ATAT CCGCTTATGC TTTAGTAGAAAAGTA leuS 811741 - 809165 - | leucyl-tRNA synthetase TERM 959 810172 - 810188 + g 91 -10.9 -4.38116 | CACCAATGTATTGGT CTACTGG TAA CCAGTAG TTTGCTTTTTCTGGA TERM 960 811938 - 811924 - g 73 -2.1 -5.26875 | gap 1, opp_overlap 811924 TGTCTAAGCAAAAAA CGG-GT TATA ACGCCG TCTTTGAACGAGTAA VFMJ11_0773 811908 - 812390 + | alpha helical protein TERM 961 812441 - 812413 - T 100 -10.4 -4.09685 | TGTTATTGGTTAAAA GGTCTGTATATC AAAGA GAGATACAGACC GTAAGATGTTACATA lnt 813964 - 812450 - | apolipoprotein N-acyltransferase TERM 962 814056 - 814027 - R 89 -9.3 -4.10179 | opp_overlap 814029, overlap 814028 TATAATTTAGATAAA GTTCAGCCACTGA AATA TCAGTGGCTGATT TTGTTATTCTTCTTC TERM 963 814055 - 814028 - R 87 -12.8 -3.05384 | opp_overlap 814029, overlap 814027 ATAATTTAGATAAAG TTCAGCCACTGA AATA TCAGTGGCTGAT TTTGTTATTCTTCTT TERM 964 814029 - 814054 + r 100 -16.3 -5.01823 | opp_overlap 814028 814027 TAATTTAGATAAAGT TCAGCCACTGA AATA TCAGTGGCTGA TTTTGTTATTCTTCT VFMJ11_0775 814938 - 814060 - | magnesium and cobalt efflux protein CorC VFMJ11_0776 815467 - 815006 - | putative metalloprotease VFMJ11_0777 816557 - 815484 - | PhoH family protein TERM 965 816668 - 816645 - R 95 -9 -5.72254 | opp_overlap 816645 TTAAATAAGAAAAAA GATGATCAAG AAAC CTTAATCATC TTTTTTAGTTTTTGA TERM 966 816645 - 816668 + r 87 -6.8 -5.54079 | opp_overlap 816645 TTAAATAAGAAAAAA GATGATCAAG AAAC CTTAATCATC TTTTTTAGTTTTTGA miaB 818127 - 816703 - | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 967 817547 - 817573 + g 71 -9.4 -2.77043 | overlap 817546 AATAGGTTTACTTCA CGTACGCCTTGC TCT GCAAGCTGTGCG ATTTCAAATAATACG TERM 968 817892 - 817908 + g 81 -3 -5.63645 | gap 1, opp_overlap 817892, overlap 817892 817894 ACACAACCACCAACA CC-GATC ACTA GATCTGG TTTTTTATCTTTTAG VFMJ11_0779 818342 - 819499 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 969 819530 - 819572 + T 73 -9.3 -2.77503 | opp_overlap 819541, overlap 819534 819541 AGTAGGAAAGAACTG GAAACACAGAAGGTGATCA TTAAT TGGTCACCTTTTTTGTATC TGATTAACTAATTAT TERM 970 819534 - 819568 + T 71 -8.7 -3.0127 | opp_overlap 819541, overlap 819530 819541 GGAAAGAACTGGAAA CACAGAAGGTGATCA TTAAT TGGTCACCTTTTTTG TATCTGATTAACTAA TERM 971 819541 - 819561 + T 93 -7.6 -5.43414 | opp_overlap 819541, overlap 819534 819530 ACTGGAAACACAGAA GGTGATCA TTAAT TGGTCACC TTTTTTGTATCTGAT TERM 972 819657 - 819638 - T 95 -4.3 -6.19443 | opp_overlap 819638 CAGACGAAAAAAAAA CCCATCA AATTAA TGATGAG CTTTTAAAAAGTGGC TERM 973 822236 - 822217 - T 100 -13.6 -5.20534 | opp_overlap 822217 AGCAAGTAATAAAAA GGCCAGCA AATT TGCTGGCC TTATTTAATTATACG TERM 974 822217 - 822236 + T 100 -13.6 -4.12296 | opp_overlap 822217 AGCAAGTAATAAAAA GGCCAGCA AATT TGCTGGCC TTATTTAATTATACG ychF 823336 - 822245 - | GTP-binding protein YchF TERM 975 822637 - 822647 + g 85 -5.4 -5.35224 | opp_overlap 822637 CAGCACAAACAGGAA CAAC TAC GTTG TTTTCTTTTTCTGCG pth 823946 - 823356 - | peptidyl-tRNA hydrolase TERM 976 824087 - 824106 + r 86 -10.6 -3.70478 | opp_overlap 824087 TTCCAAATACAAAAA CGCCCCGC AAAG GCAGGGCG TTTGAATAGATTTCT TERM 977 824106 - 824087 - R 100 -12.8 -5.19879 | opp_overlap 824087 TTCCAAATACAAAAA CGCCCCGC AAAG GCAGGGCG TTTGAATAGATTTCT VFMJ11_0800 825126 - 824128 - | ribose-Phosphate pyrophosphokinase ispE 825980 - 825114 - | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase lolB 826588 - 825977 - | outer membrane lipoprotein LolB hemA 826773 - 828029 + | glutamyl-tRNA reductase prfA 828069 - 829157 + | peptide chain release factor 1 TERM 978 829208 - 829232 + G 82 -11.5 -3.24902 | overlap 829206 ATTCAATCTCTGACA CTTGAGGGGAG TGA TTCTCCTCAAG TTGATGCTGCTGTTC TERM 979 829768 - 829809 + G 93 -9.5 -4.71482 | gap 1, opp_overlap 829785, overlap 829769 ATCTGAAGGGGATGT TCGTTTTGAACCGCAAACCG CTT TGGT-TGCGGAACAAAACGG TTTTTCAGATTTAAT TERM 980 829769 - 829808 + G 80 -10.8 -3.41804 | gap 1, opp_overlap 829785, overlap 829768 TCTGAAGGGGATGTT CGTTTTGAACCGCAAACCG CTT TGGT-TGCGGAACAAAACG GTTTTTCAGATTTAA hemK 829157 - 830011 + | protein-(glutamine-N5) methyltransferase, release factor-specific TERM 981 830328 - 830318 - g 79 -5.4 -4.88293 | opp_overlap 830318 AATGGTAAAAACAAA GTCT TTA AGAC CTTTGCATTTTTAGG VFMJ11_0806 830027 - 830410 + | transcriptional regulator VFMJ11_0807 830413 - 831225 + | transcriptional regulator kdsA 831237 - 832091 + | 3-deoxy-8-phosphooctulonate synthase TERM 982 832150 - 832118 - T 100 -7.7 -5.82036 | opp_overlap 832118 AGAATAAATAAAAAA GCCCAAGAGAGAATA CTT TCTACTTTCTTGGGC TTTTTTATTATATGA TERM 983 832118 - 832150 + T 100 -9.9 -5.60689 | opp_overlap 832118 AGAATAAATAAAAAA GCCCAAGAGAGAATA CTT TCTACTTTCTTGGGC TTTTTTATTATATGA cobA 832951 - 832175 - | uroporphyrin-III C-methyltransferase TERM 984 832330 - 832371 + g 73 -10.3 -2.80053 | opp_overlap 832333, overlap 832329 832333 TTGTGCCTCGCTCAA TAATTGCACATGGTGTATC AGTA GCTAATCCATGTGCAATTA ATTGTTCAGATATAT TERM 985 833035 - 833009 - R 100 -8.9 -5.94713 | opp_overlap 833009 AGTCGATAAAAAAAA TCACCCTTAAT CAATT ATTAAGAGTGA TTTTAATCGCATGAG TERM 986 833009 - 833035 + r 71 -6.7 -4.26903 | opp_overlap 833009 AGTCGATAAAAAAAA TCACCCTTAAT CAATT ATTAAGAGTGA TTTTAATCGCATGAG VFMJ11_0810 833853 - 833080 - | nitrite transporter nirD 834333 - 834004 - | nitrite reductase (NAD(P)H), small subunit nirB 836912 - 834336 - | nitrite reductase (NAD(P)H), large subunit TERM 987 836022 - 835991 - G 79 -11 -3.14344 | gap 1, opp_overlap 835996, overlap 835996 CACTTTCGTTACCAA CTAAATGGTCAACGG CAA CCGTTG-CCATTTTG TAACCAGGAGCAACC TERM 988 836017 - 835996 - G 83 -9.5 -3.95584 | gap 1, opp_overlap 835996, overlap 835991 TCGTTACCAACTAAA TGGTCAACGG CAA CCGTTG-CCA TTTTGTAACCAGGAG TERM 989 835996 - 836017 + g 90 -9.5 -4.36914 | gap 1, opp_overlap 835991 835996 TCGTTACCAACTAAA TGGTCAACGG CAA CCGTTG-CCA TTTTGTAACCAGGAG TERM 990 837022 - 837034 + r 79 -4.1 -5.30348 | AGGGGTAGTTCTAAG GTGGT AAT ATCAC TTTTTGTTATTAAAT TERM 991 837181 - 837156 - R 100 -10.5 -6.06723 | opp_overlap 837132 837156 TTTCTGAAAAAAAAA GACAGAATGTG AATT CACGTTCTGTC TTTAATTTGGGGATA TERM 992 837156 - 837181 + r 100 -12.7 -4.06502 | opp_overlap 837156, overlap 837132 TTTCTGAAAAAAAAA GACAGAATGTG AATT CACGTTCTGTC TTTAATTTGGGGATA VFMJ11_0813 839083 - 837209 - | methyl-accepting chemotaxis protein TERM 993 839548 - 839534 - g 77 -6.4 -4.56597 | GTCTTTCTCTAAAAA CAGCTA TTG CAGCTG CATTGGTAACAACTT VFMJ11_0814 839509 - 841170 + | protein UshA TERM 994 841196 - 841215 + T 100 -10 -5.626 | opp_overlap 841196 ACTGGTTAATAAAAA GCCTCCAG ATAT TTGGAGGC TTTTTTTATGCACTG TERM 995 841215 - 841196 - T 100 -9.3 -5.06816 | opp_overlap 841196 ACTGGTTAATAAAAA GCCTCCA GATATT TGGAGGC TTTTTTTATGCACTG VFMJ11_0815 841805 - 841221 - | smr/muts family protein TERM 996 842125 - 842104 - R 100 -14.5 -5.03715 | opp_overlap 842104 ACCACTTTTAAAAAA GCCGCATCA GAAA TGATGCGGC TTTTTTGCATTTGTC TERM 997 842104 - 842125 + r 100 -14.5 -5.24449 | opp_overlap 842104 ACCACTTTTAAAAAA GCCGCATCA GAAA TGATGCGGC TTTTTTGCATTTGTC TERM 998 842384 - 842361 - R 77 -5.3 -4.99035 | TGATTGATATAAAAA CGGCATTGA TATCAC TCAACACCG TTTATTATTTCCCTA VFMJ11_0817 842862 - 842425 - | CopG protein VFMJ11_0818 845646 - 842965 - | copper-transporting P-type ATPase TERM 999 845077 - 845092 + g 82 -4 -5.45802 | gap 1, opp_overlap 845077 TTCAGCAAGATTAAC CGT-CAC TGA GTGTACG TTTTTATTTTGCGCA TERM 1000 845553 - 845577 + g 79 -3.5 -5.36364 | TTACCGAGTATTGCT GTATATGCGGA TTG TCGGCAAATGC TTTTTCTATTTTTGC cueR 845732 - 846133 + | Cu(I)-responsive transcriptional regulator VFMJ11_0820 847008 - 846154 - | thioredoxin domain protein TERM 1001 847085 - 847121 + r 90 -11.2 -3.53091 | gap 1, opp_overlap 847085, overlap 847092 CAAGGAGACAAAAAA CAAGAAAGCCACGATAT TAAT ATATTGTGGCTTT-TTG TTTGCAAGCAAAGGT TERM 1002 847121 - 847085 - R 95 -9 -5.42131 | gap 1, opp_overlap 847085 847092 CAAGGAGACAAAAAA CAAGAAAGCCACGATAT TAAT ATATTGTGGCTTT-TTG TTTGCAAGCAAAGGT TERM 1003 847092 - 847115 + r 100 -10.4 -5.27335 | opp_overlap 847085, overlap 847085 ACAAAAAACAAGAAA GCCACGATAT TAAT ATATTGTGGC TTTTTGTTTGCAAGC VFMJ11_0821 848164 - 847337 - | short chain dehydrogenase TERM 1004 848307 - 848324 + r 95 -8.5 -5.45726 | opp_overlap 848307 GTATAAAATAAAAAA GCCAATA ATAC TATTGGC TTTTTTTGGAGTATG TERM 1005 848324 - 848307 - R 100 -8.5 -5.86976 | opp_overlap 848307 GTATAAAATAAAAAA GCCAATA ATAC TATTGGC TTTTTTTGGAGTATG VFMJ11_0822 849355 - 848348 - | glycine betaine/L-proline-binding protein TERM 1006 848437 - 848447 + g 81 -6.8 -4.82855 | opp_overlap 848436 CGTGAGATTCAATAT CAGC AGT GCTG TTTTTACCTTTACTC VFMJ11_0823 850440 - 849358 - | glycine betaine/L-proline transport system permease protein ProW VFMJ11_0824 851631 - 850444 - | glycine betaine transport ATP-binding protein opuAA VFMJ11_0825 852922 - 852017 - | hypothetical protein TERM 1007 852609 - 852594 - G 70 -3.3 -5.0065 | GATCCAGAAATAAAA CAACT AGGTGG AGTTG AAGAGGCAAGACAAA TERM 1008 853421 - 853407 - g 74 -4.2 -5.1101 | overlap 853408 CCACCATTGAAAAAA GGCGAT ATT ATCGCT CATGGTCATACGCAT TERM 1009 853420 - 853408 - g 70 -7.7 -3.65883 | overlap 853407 CACCATTGAAAAAAG GCGAT ATT ATCGC TCATGGTCATACGCA VFMJ11_0826 853050 - 853598 + | phosphodiesterase YfcE TERM 1010 853617 - 853649 + T 71 -7.9 -3.53298 | opp_overlap 853602 853607 853616 853624, overlap 853624 TTATATTTTAGATAT AAAAAAAGAAGCG TAATAAT CGCTTCTTTTTTA TTAATTTGAAATCAT TERM 1011 853624 - 853642 + T 88 -6 -5.59655 | opp_overlap 853624 853616, overlap 853617 TTAGATATAAAAAAA GAAGCG TAATAAT CGCTTC TTTTTTATTAATTTG TERM 1012 853642 - 853624 - T 88 -6 -5.76633 | opp_overlap 853617 853624, overlap 853616 TTAGATATAAAAAAA GAAGCG TAATAAT CGCTTC TTTTTTATTAATTTG VFMJ11_0827 854212 - 853667 - | ToxS VFMJ11_0828 855084 - 854203 - | toxin transcriptional activator ToxR VFMJ11_0829 855315 - 857210 + | chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) TERM 1013 857267 - 857231 - f 82 -8.9 -3.90922 | opp_overlap 857233, overlap 857228 857233 ATTTGTGCTAAATAA GATGAGACCTTAGTA AAGATAA CACTAAGGTCTCATT GTCTTTAACGGTGAA TERM 1014 857233 - 857265 + F 90 -10.8 -3.82202 | opp_overlap 857228 857231 857233 TTGTGCTAAATAAGA TGAGACCTTAGT AAAGATAAC ACTAAGGTCTCA TTGTCTTTAACGGTG TERM 1015 857265 - 857233 - f 90 -11.5 -3.54488 | opp_overlap 857233, overlap 857228 857231 TTGTGCTAAATAAGA TGAGACCTTAGTA AAGATAA CACTAAGGTCTCA TTGTCTTTAACGGTG TERM 1016 857302 - 857312 + F 74 -3.2 -5.26875 | CACACAATTTAAGAG GCAG TTT TTGC TTTTTTAATTGCAAA VFMJ11_0830 857472 - 858116 + | adenylate kinase (ATP-AMP transphosphorylase) TERM 1017 858151 - 858169 + F 93 -8.1 -5.60993 | opp_overlap 858151 TATTGCTATATTGAA GCGGCCT TTTAT AGGTCGC TTTTTTTATGGAAAA hemH 858202 - 859170 + | ferrochelatase tig 859512 - 860810 + | trigger factor TERM 1018 860865 - 860892 + F 100 -17.2 -4.77173 | opp_overlap 860865 AAGATCTGCTAATAA TGGTCCGAATGA AGCG TCATTCGGACCA TTTATTTTATAAGGG TERM 1019 860892 - 860865 - f 100 -17.2 -3.63341 | opp_overlap 860865 AAGATCTGCTAATAA TGGTCCGAATGA AGCG TCATTCGGACCA TTTATTTTATAAGGG clpP 860916 - 861539 + | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 1020 861567 - 861551 - f 80 -5.1 -5.31456 | CTAATTCATAAAAAA GCAGTAA CGT TTACAGC AAAGAAGGTAAGTTA clpX 861626 - 862912 + | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 1021 862905 - 862895 - f 71 -3.2 -5.08878 | overlap 862899 AACACAGAAACAAAA GCAA TTT CTGC TGAATAGCAAAAAGA TERM 1022 862955 - 862940 - f 100 -10.4 -5.08601 | opp_overlap 862940 TTAGTTGAATAAAAA GGAGGC ATTG GCCTCC TTTTTTATTTTTTAA TERM 1023 862940 - 862955 + F 100 -10.4 -6.04324 | opp_overlap 862940 TTAGTTGAATAAAAA GGAGGC ATTG GCCTCC TTTTTTATTTTTTAA TERM 1024 865037 - 865025 - g 84 -7.7 -4.72986 | GATTTCTACGAAAAA CGTGA TAT TCACG TACACGTACCAGAAG lon 863117 - 865399 + | ATP-dependent protease La TERM 1025 865428 - 865456 + F 73 -8.9 -3.17186 | opp_overlap 865427 865425 865428, overlap 865425 865423 865437 ACGTTGATATAACAG GGCTGACAAGTCG AAA TGACTTGTCACTC TATATTGATATCGTT VFMJ11_0836 865572 - 865844 + | DNA-binding protein HU-beta TERM 1026 865887 - 865873 - f 75 -10 -2.72109 | overlap 865872 865862 AAAACTCTACACAAG CTAGCG TAA CGCTAG TAGACTAGAGATATG TERM 1027 865911 - 865928 + F 100 -11.3 -5.64873 | AGATATGAGTCATAG GCGCATC CAAT GATGCGC TTTTTTATTGTTAAA VFMJ11_0837 866049 - 867905 + | peptidyl-prolyl cis-trans isomerase D TERM 1028 867933 - 867963 + T 100 -15.4 -4.59773 | opp_overlap 867936, overlap 867935 867936 867938 TAACTGATAAATATA AAAGACGGGCCCCT ATA AGGGGCCCGTCGTG TTTTTAAAGATAGAA TERM 1029 867935 - 867961 + T 100 -18 -3.91506 | opp_overlap 867936, overlap 867933 867936 867938 ACTGATAAATATAAA AGACGGGCCCCT ATA AGGGGCCCGTCG TGTTTTTAAAGATAG TERM 1030 867936 - 867960 + T 100 -21.5 -2.94422 | opp_overlap 867936, overlap 867935 867933 867938 CTGATAAATATAAAA GACGGGCCCCT ATA AGGGGCCCGTC GTGTTTTTAAAGATA TERM 1031 867960 - 867936 - T 100 -21.5 -4.84918 | opp_overlap 867936 867935 867933 867938 CTGATAAATATAAAA GACGGGCCCCT ATA AGGGGCCCGTC GTGTTTTTAAAGATA TERM 1032 867938 - 867958 + T 100 -18.3 -3.01831 | opp_overlap 867936, overlap 867936 867935 867933 GATAAATATAAAAGA CGGGCCCCT ATA AGGGGCCCG TCGTGTTTTTAAAGA VFMJ11_0838 868064 - 867945 - | hypothetical protein TERM 1033 868050 - 868066 + g 76 -2.3 -5.46698 | ATAGGTGTTGTTTTC TGATG TATCAAT CATCA TTTTTTCATTTTAAA VFMJ11_0839 868093 - 868395 + | come operon protein 1 TERM 1034 868473 - 868443 - T 93 -12.7 -3.44229 | opp_overlap 868449, overlap 868449 AGTTCATTAGTATAA TAAAAAGGCAGCC ATGAA GGCTGCCTTTTTT GTGCTAAATTGTATT TERM 1035 868467 - 868449 - T 100 -11.7 -5.22006 | opp_overlap 868449, overlap 868443 TTAGTATAATAAAAA GGCAGCC ATGAA GGCTGCC TTTTTTGTGCTAAAT TERM 1036 868449 - 868467 + T 100 -11.7 -5.31877 | opp_overlap 868443 868449 TTAGTATAATAAAAA GGCAGCC ATGAA GGCTGCC TTTTTTGTGCTAAAT TERM 1037 868489 - 868507 + T 77 -9 -3.69836 | overlap 868485 GTGCTAAATTGTATT CTGAATAT TTG ATATTCAG TTTGGAATTACTTAT VFMJ11_0840 869877 - 868522 - | di-/tripeptide transporter TERM 1038 868931 - 868941 + g 71 -6.8 -4.0896 | GCAAATTTAACTGGT GAGC TTG GCTC TTTTGGACCGAGTTT TERM 1039 870182 - 870201 + H 74 -2.2 -5.49729 | overlap 870199 TGTGCGTGTAACTAT TGATTTTT ACTA GGAAATCA TTTTTTTGAATGATT rfaH 870260 - 870754 + | transcriptional activator RfaH TERM 1040 870796 - 870751 - T 90 -13.7 -3.14125 | gap 1, opp_overlap 870761 870767, overlap 870767 CTCAGATATCGAATA TTAATGCATAAAAAAAGCGCCT ATA AGGCGCTTTTTAT-TACATTAA AATGAGTGCTAGTGT TERM 1041 870761 - 870787 + T 91 -12.4 -3.18274 | opp_overlap 870751 870767, overlap 870767 GAATATTAATGCATA AAAAAAGCGCCT ATA AGGCGCTTTTTA TTACATTAAAATGAG TERM 1042 870781 - 870767 - T 100 -11.4 -5.66684 | opp_overlap 870761 870767, overlap 870751 TAATGCATAAAAAAA GCGCCT ATA AGGCGC TTTTTATTACATTAA TERM 1043 870767 - 870781 + T 100 -11.4 -5.13741 | opp_overlap 870767 870751, overlap 870761 TAATGCATAAAAAAA GCGCCT ATA AGGCGC TTTTTATTACATTAA asnB 872480 - 870813 - | asparagine synthase TERM 1044 872707 - 872735 + r 91 -11.8 -3.62723 | opp_overlap 872707, overlap 872703 AAAGAGATAAAAAAA GAGAGCACAACA AATGA TGCTGTGCTCTC TTCATTATTTGAATG TERM 1045 872735 - 872707 - R 100 -14 -5.82281 | opp_overlap 872707 872703 AAAGAGATAAAAAAA GAGAGCACAACA AATGA TGCTGTGCTCTC TTCATTATTTGAATG VFMJ11_0843 874373 - 872769 - | glutathione-regulated potassium-efflux system protein KefC TERM 1046 874310 - 874297 - G 82 -3.7 -5.4833 | opp_overlap 874297 CCAGCTAATAAAAAA CCGAC AAGA GGCGG TAGGTTAATTTTTAA TERM 1047 874424 - 874406 - R 100 -11 -5.53288 | GGTAATCGAAAAAAA GGGCTGCT AAT AGCAACCC TTAGAATAATAACAC VFMJ11_0844 875672 - 874458 - | protein mlc (Making large colonies protein) nagA_2 876810 - 875674 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1048 876951 - 876972 + H 74 -5.3 -4.74215 | gap 1, opp_overlap 876946 876951, overlap 876946 TCAGTAATGACAAAA TTTGGT-CAT AAT ATGCACCAAA TTTTATTCCTGATGT TERM 1049 876972 - 876951 - H 71 -5.3 -4.56607 | gap 1, opp_overlap 876951 876946, overlap 876946 TCAGTAATGACAAAA TTTGGT-CAT AAT ATGCACCAAA TTTTATTCCTGATGT nagE_1 877213 - 878706 + | pts system, N-acetylglucosamine-specific iibc component TERM 1050 878762 - 878729 - f 74 -6.7 -4.32201 | opp_overlap 878736, overlap 878736 GTAATTAACTCAAAA TCAACAAGCCGCTCT CTTT AGAGCGGCTTTTTTT ATATAAATAACCAAA TERM 1051 878736 - 878755 + F 100 -13.6 -5.72616 | opp_overlap 878729 878736 ACTCAAAATCAACAA GCCGCTCT CTTT AGAGCGGC TTTTTTTATATAAAT TERM 1052 878755 - 878736 - f 100 -13.6 -3.97102 | opp_overlap 878736, overlap 878729 ACTCAAAATCAACAA GCCGCTCT CTTT AGAGCGGC TTTTTTTATATAAAT glnS 878882 - 880540 + | glutaminyl-tRNA synthetase TERM 1053 880583 - 880566 - T 100 -9.9 -5.4833 | opp_overlap 880566 CTAGCTAATAAAAAA CCAGCAT GAAA ATGCTGG TTTTTTTATATGAGC TERM 1054 880566 - 880583 + T 100 -9.9 -5.71712 | opp_overlap 880566 CTAGCTAATAAAAAA CCAGCAT GAAA ATGCTGG TTTTTTTATATGAGC VFMJ11_0848 881062 - 880619 - | ferric uptake regulation protein VFMJ11_0849 881243 - 881707 + | pink VFMJ11_0850 882288 - 881761 - | flavodoxin VFMJ11_0851 882569 - 882348 - | hypothetical protein VFMJ11_0852 883430 - 882657 - | esterase YbfF TERM 1055 882923 - 882935 + g 77 -7.7 -4.18983 | opp_overlap 882923 882918 TCACATTAAAGCGAA GAGCA AGG TGCTC TTGTTCTTTATATAG TERM 1056 883787 - 883798 + G 75 -5.8 -4.74453 | opp_overlap 883787 TCAGCATTAGATAAA GCGA TCGA TCGC TTTTTAACTGTATTA seqA 883529 - 884071 + | SeqA protein TERM 1057 884131 - 884163 + G 72 -8.4 -3.56643 | opp_overlap 884131 TCAAATGGCTATACA TCCTCGTGCTGGGC AGAAA GCTCAGCAAGAAGA TTTACACAATATCCC pgm 884120 - 885766 + | phosphoglucomutase, alpha-D-glucose phosphate-specific TERM 1058 885805 - 885789 - f 80 -9.4 -3.69943 | opp_overlap 885789, overlap 885785 AGTAATACAAATTAA GCAGCG CATGT CGCTGC TTTTTTTTGATAAGA TERM 1059 885789 - 885805 + F 100 -9.4 -5.86061 | opp_overlap 885789 885785 AGTAATACAAATTAA GCAGCG CATGT CGCTGC TTTTTTTTGATAAGA VFMJ11_0855 885831 - 886586 + | hypothetical protein TERM 1060 886643 - 886622 - T 100 -11.7 -5.71712 | opp_overlap 886622 GGTGATATAAAAAAA GGTTGATGT ATTT ACATCAACC TTTTTGTTCATAGGT TERM 1061 886622 - 886643 + T 100 -11.7 -5.14163 | opp_overlap 886622 GGTGATATAAAAAAA GGTTGATGT ATTT ACATCAACC TTTTTGTTCATAGGT gltA 887967 - 886678 - | citrate (Si)-synthase TERM 1062 887680 - 887692 + g 74 -9.1 -3.55071 | ATATTCTTCTCTGTT TGGCG CTT CGCCA TTTAGAAGGATATAA sdhC 888463 - 888756 + | succinate dehydrogenase, cytochrome b556 subunit sdhD 888750 - 889097 + | succinate dehydrogenase, hydrophobic membrane anchor protein TERM 1063 890528 - 890509 - g 77 -7.8 -4.21812 | GTGTATGCAAAATAA CTTCTCGG TATT CCGTGAAG GTGATGCAATGGCAA sdhA 889097 - 890866 + | succinate dehydrogenase, flavoprotein subunit VFMJ11_0860 890879 - 891592 + | succinate dehydrogenase iron-sulfur subunit TERM 1064 891601 - 891628 + F 90 -11.4 -3.78934 | overlap 891602 GGTATAATTTACTTT TCCTCAACCTAT GTTG ATAGGTTGAGGC TTATTATAAGCCCGG TERM 1065 891602 - 891627 + F 95 -14.9 -2.87146 | overlap 891601 GTATAATTTACTTTT CCTCAACCTAT GTTG ATAGGTTGAGG CTTATTATAAGCCCG TERM 1066 892252 - 892236 - g 71 -3.7 -4.87037 | overlap 892237 AATACAGAGGAAAAA CGTTG GATTCAA CAACG TCTAGAATCTGTAGC TERM 1067 894344 - 894332 - g 77 -7.7 -4.24726 | opp_overlap 894332, overlap 894337 AGAAGAACCTCAAAA CCAAG GTG CTTGG TATTCAAGCCAACAT sucA 891690 - 894506 + | oxoglutarate dehydrogenase (succinyl-transferring), E1 component sucB 894526 - 895737 + | dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex TERM 1068 895760 - 895785 + F 71 -7.5 -3.69338 | opp_overlap 895762, overlap 895762 TTTTAGTGAGAAACA AAGGCTGCCAT GCTC ACGGCAGCCTC TTATTCAACTTCATT TERM 1069 895783 - 895762 - f 100 -12.3 -4.57482 | opp_overlap 895760 895762 TTAGTGAGAAACAAA GGCTGCCAT GCTC ACGGCAGCC TCTTATTCAACTTCA TERM 1070 895762 - 895783 + F 81 -10.1 -3.42069 | opp_overlap 895762, overlap 895760 TTAGTGAGAAACAAA GGCTGCCAT GCTC ACGGCAGCC TCTTATTCAACTTCA TERM 1071 895867 - 895851 - f 72 -5.1 -4.82667 | TTAGGACATTAAAAA TTCCCAT ATA AAGGGAA TAACATAAAATGGAT VFMJ11_0863 895891 - 897057 + | succinyl-CoA synthetase beta chain TERM 1072 897893 - 897883 - g 79 -5.4 -4.87807 | TTAAGACAGTAAAAA GTCT TGC AGAC ATCGGTAAAGCACTA VFMJ11_0864 897057 - 897929 + | succinyl-CoA ligase (ADP-forming) subunit alpha TERM 1073 897961 - 897984 + F 95 -9 -5.24989 | opp_overlap 897961 ATGAATAACTCAGAA GCCATTTATA GAAA TATGAATGGC TTTTTTAATATGTGA VFMJ11_0865 898126 - 899772 + | methyl-accepting chemotaxis protein TERM 1074 899805 - 899782 - T 100 -15.4 -5.69262 | opp_overlap 899782 TTATAAAAATAAAAA GAGCAAGACG AAAT CGTCTTGCTC TTTTTGTATGACTTA TERM 1075 899782 - 899805 + T 100 -15.4 -5.00642 | opp_overlap 899782 TTATAAAAATAAAAA GAGCAAGACG AAAT CGTCTTGCTC TTTTTGTATGACTTA VFMJ11_0866 900652 - 899867 - | high-affinity zinc uptake system membrane protein ZnuB TERM 1076 900412 - 900424 + g 70 -3.4 -4.85599 | ATAGGGTATCGGTAG CAAC AAGAC GTTG TTTTTGTAAAGTCAC VFMJ11_0867 901419 - 900652 - | zinc import ATP-binding protein ZnuC 1 VFMJ11_0868 901508 - 902401 + | high-affinity zinc uptake system protein ZnuA VFMJ11_0869 902554 - 903738 + | peptidase M23B TERM 1077 903766 - 903792 + F 100 -10.3 -5.43487 | gap 1, opp_overlap 903766 ACATAATTATATAAA GCCCTG-CATAT ATTA ATATGACAGGGC TTTTTTATATCCTTT TERM 1078 903792 - 903766 - f 100 -10.3 -4.16259 | gap 1, opp_overlap 903766 ACATAATTATATAAA GCCCTG-CATAT ATTA ATATGACAGGGC TTTTTTATATCCTTT TERM 1079 903903 - 903917 + G 89 -5.8 -5.38398 | opp_overlap 903903 TGCTTTTCTTCAGAA TACTTA CTT TAAGTA TTTTTCTCTTTTTCT TERM 1080 907184 - 907194 + G 73 -6.8 -4.20106 | overlap 907191 TCTGGTCAGAAAGTT GCAG ATG CTGC TTTTGAATCAGGTTT VFMJ11_0870 903887 - 907294 + | transcriptional regulator, AraC family TERM 1081 907476 - 907442 - f 100 -10.7 -6.28967 | opp_overlap 907474, overlap 907444 907445 CATAAAGAAAAAAAA GATCGTGACGTAGCC GGGGG GACTACGTCACGGGC GCCAAAGACGCCTTC TERM 1082 907474 - 907444 - f 100 -11.9 -4.74858 | overlap 907442 907445 TAAAGAAAAAAAAGA TCGTGACGTAGCC GGGGG GACTACGTCACGG GCGCCAAAGACGCCT TERM 1083 907473 - 907445 - f 100 -15.4 -3.41254 | overlap 907444 907442 AAAGAAAAAAAAGAT CGTGACGTAGCC GGGGG GACTACGTCACG GGCGCCAAAGACGCC TERM 1084 907502 - 907529 + F 93 -14.4 -3.05963 | opp_overlap 907509, overlap 907502 907505 CCTTCGCTTGCTGCC GAAGTAACAAGA TACT TCTTGTTACTTC TATTAGAATAAAAGT TERM 1085 907505 - 907526 + F 86 -10.3 -3.67611 | opp_overlap 907509, overlap 907502 907502 TCGCTTGCTGCCGAA GTAACAAGA TACT TCTTGTTAC TTCTATTAGAATAAA VFMJ11_0871 907923 - 908150 + | hypothetical protein feoB 908152 - 910428 + | ferrous iron transport protein B VFMJ11_0873 910425 - 910667 + | hypothetical protein TERM 1086 910701 - 910720 + T 100 -10 -5.60993 | opp_overlap 910701 AGTGATAAATAAAAA CGAGGACC AATT GGTTCTCG TTTTTTTATGGGGAA TERM 1087 910720 - 910701 - T 89 -7.8 -5.38958 | opp_overlap 910701 AGTGATAAATAAAAA CGAGGACC AATT GGTTCTCG TTTTTTTATGGGGAA TERM 1088 911112 - 911147 + T 72 -6.2 -4.43477 | opp_overlap 911118, overlap 911115 911118 TATCTCATAAGCACA AAAAAAGACACGCAAT TTTC ATCGCGTGTCTTCTTA TTTTCATTAACTACA TERM 1089 911115 - 911144 + T 81 -7.9 -4.33004 | opp_overlap 911118, overlap 911112 911118 CTCATAAGCACAAAA AAAGACACGCAAT TTTC ATCGCGTGTCTTC TTATTTTCATTAACT TERM 1090 911118 - 911141 + T 93 -9.6 -4.26559 | opp_overlap 911118, overlap 911115 911112 ATAAGCACAAAAAAA GACACGCAAT TTTC ATCGCGTGTC TTCTTATTTTCATTA TERM 1091 911141 - 911118 - T 100 -11.8 -5.73339 | opp_overlap 911118 911115 911112 ATAAGCACAAAAAAA GACACGCAAT TTTC ATCGCGTGTC TTCTTATTTTCATTA VFMJ11_0874 913349 - 911184 - | phosphate acetyltransferase TERM 1092 913417 - 913436 + r 78 -7.8 -4.11371 | opp_overlap 913417 CATAGAAAGAAAAAA GGCTAACC TAAT GGCTAGCC TTTTAGGAGATATTA TERM 1093 913436 - 913417 - R 100 -10 -5.76237 | opp_overlap 913417 CATAGAAAGAAAAAA GGCTAACC TAAT GGCTAGCC TTTTAGGAGATATTA TERM 1094 913454 - 913475 + r 70 -8.1 -3.33492 | gap 1, opp_overlap 913454 913456, overlap 913457 TTAGGAGATATTACA GAC-CAGCTA GTT TAGCTGTGTC TTCTGCGATAACTAG TERM 1095 913457 - 913471 + r 73 -8.6 -3.18118 | opp_overlap 913456 913454, overlap 913454 GGAGATATTACAGAC CAGCTA GTT TAGCTG TGTCTTCTGCGATAA ackA_1 914645 - 913449 - | acetate kinase VFMJ11_0876 914963 - 915412 + | membrane protein TERM 1096 915470 - 915439 - T 77 -8.9 -3.67389 | opp_overlap 915446, overlap 915446 ACAAAGTATAGATAA TAAAAAAGGAGCT GATTTT AGCTCCTTTTTTG ATCTTTAGTTATCAA TERM 1097 915446 - 915463 + T 89 -7.7 -5.32699 | opp_overlap 915439 915446 ATAGATAATAAAAAA GGAGCTG ATTT TAGCTCC TTTTTTGATCTTTAG TERM 1098 915463 - 915446 - T 93 -7 -5.62045 | opp_overlap 915446, overlap 915439 ATAGATAATAAAAAA GGAGCT GATTTT AGCTCC TTTTTTGATCTTTAG TERM 1099 915509 - 915486 - T 87 -11.2 -3.18383 | opp_overlap 915489, overlap 915489 ATCTTTAGTTATCAA CAATCTGAAT GAGT ATTCAGATTG TTGAAATAGGCATTA TERM 1100 915506 - 915489 - T 70 -7.1 -3.73647 | opp_overlap 915489, overlap 915486 TTTAGTTATCAACAA TCTGAAT GAGT ATTCAGA TTGTTGAAATAGGCA argS 917255 - 915522 - | arginyl-tRNA synthetase TERM 1101 915977 - 915994 + g 78 -4.1 -5.24003 | opp_overlap 915968, overlap 915970 915979 ACTTAACGGCTGCCA TTGCAAC AGTT GTAGCAA TTTTTGCTTTTTCTT TERM 1102 915979 - 916001 + g 81 -5.6 -5.08601 | opp_overlap 915968, overlap 915970 915977 TTAACGGCTGCCATT GCAACAGTTG TAG CAATTTTTGC TTTTTCTTCAGCTGG TERM 1103 917347 - 917361 + H 79 -3.6 -5.45652 | AAAACAGGGGATATT TAATAG TTT CTGTTA TTTTTTATTGCAACT VFMJ11_0878 917463 - 918059 + | protein YecM TERM 1104 918087 - 918110 + T 85 -6.8 -5.32944 | opp_overlap 918086 918079 918087 TTAAGAACATAAAAG GCATCCAA TCTAGAAT TTGGATGC TTTTTTGATTATGGG VFMJ11_0879 919380 - 918142 - | dehydrogenase TERM 1105 919202 - 919172 - G 71 -6.2 -4.27316 | opp_overlap 919190 919195, overlap 919197 TCTTTGAATTGAAAA CAAGCATCTTCAAC AGC GTTTAACATGCCTG CATGTTTAATGGATT TERM 1106 919436 - 919402 - R 100 -11.6 -4.60797 | opp_overlap 919400, overlap 919403 TCCTTAGAGACAAAA GCACCACTTTAGGT ATCAGTA ACCTAAAGTGGTGA GGATATTATTATATT TERM 1107 919435 - 919403 - R 100 -15.1 -3.35996 | opp_overlap 919400, overlap 919402 CCTTAGAGACAAAAG CACCACTTTAGGT ATCAGTA ACCTAAAGTGGTG AGGATATTATTATAT VFMJ11_0880 920547 - 919480 - | SAM-dependent methyltransferase TERM 1108 920588 - 920578 - R 70 -4 -4.95302 | TTAAAGATAATAAAA TGAT CAT ATCA GTGGTAATGAGTGAA VFMJ11_0881 921226 - 920651 - | lipoprotein, putative VFMJ11_0882 921365 - 922084 + | hypothetical protein VFMJ11_0883 922089 - 922886 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase VFMJ11_0884 922894 - 923151 + | acyl carrier protein VFMJ11_0885 923163 - 923420 + | acyl carrier protein TERM 1109 923461 - 923412 - f 75 -7.1 -4.11216 | opp_overlap 923420, overlap 923421 GCTGCACTGTTAAAA GGCGAATAATGCGTTGGCTGACA GCGC TGTCAGCCATTGCACTCTTAGCA TATCCGTTAGCGGTC TERM 1110 923420 - 923453 + G 75 -10.3 -3.0814 | opp_overlap 923412 923421 GTTAAAAGGCGAATA ATGCGTTGGCTGACA GCGC TGTCAGCCATTGCAC TCTTAGCATATCCGT TERM 1111 923452 - 923421 - g 88 -11.6 -3.73106 | opp_overlap 923420, overlap 923412 TTAAAAGGCGAATAA TGCGTTGGCTGACA GCGC TGTCAGCCATTGCA CTCTTAGCATATCCG VFMJ11_0886 923420 - 923980 + | DNA gyrase subunit B TERM 1112 925134 - 925117 - g 83 -4.8 -5.30348 | opp_overlap 925117, overlap 925118 ATGGAAGAAGAAAAA CGCACC GTATTG GGTGCA GTGATTGTTCTATCA VFMJ11_0887 923956 - 925344 + | hypothetical protein VFMJ11_0888 925358 - 925732 + | hypothetical protein VFMJ11_0889 925735 - 927426 + | glycosyl transferase family 2 VFMJ11_0890 927416 - 928951 + | phenylalanine and histidine ammonia-lyase VFMJ11_0891 928963 - 929409 + | esterase VFMJ11_0892 929402 - 930022 + | hypothetical protein TERM 1113 932160 - 932149 - g 72 -4.4 -4.7458 | AGCAGAATAAACAAA GTGA TGAT TCAC ATAAAGAAAGCACGC VFMJ11_0893 930006 - 932378 + | transporter VFMJ11_0894 932428 - 932994 + | phospho-N-acetylmuramoyl-pentapeptide- transferase TERM 1114 933470 - 933498 + G 74 -5.2 -4.77165 | overlap 933465 933472 933475 GCCAACGTATGCGAT CTCAACCGCTTG TTCCT CAAGTGGTCGTG TTTTCTTATCGGCAA VFMJ11_0895 933048 - 934187 + | hypothetical protein VFMJ11_0896 934187 - 934648 + | hypothetical protein TERM 1115 935209 - 935194 - g 72 -3.2 -5.1166 | overlap 935195 TAGCAAAACGAAAAA TCACAG TAAA CTGTGT TGCACCAGGTTTAAT VFMJ11_0897 934668 - 935393 + | 3-oxoacyl-(acyl-carrier-protein) reductase, putative VFMJ11_0898 935390 - 936625 + | hypothetical protein TERM 1116 936654 - 936673 + T 100 -12.2 -5.82281 | opp_overlap 936654 ACAAATAATAAAAAA CCGGTGAA GAAA TTCACCGG TTTTTTTGTGTCTTT TERM 1117 936673 - 936654 - T 100 -12.2 -5.74288 | opp_overlap 936654 ACAAATAATAAAAAA CCGGTGAA GAAA TTCACCGG TTTTTTTGTGTCTTT VFMJ11_0899 937148 - 936705 - | heat shock protein HslJ TERM 1118 936975 - 936985 + g 85 -5.4 -5.26316 | GCCGATTTCAAGACG TGGA GCT TCCA TTTTTTCTGGAGTAG TERM 1119 937393 - 937359 - R 100 -16 -3.04558 | opp_overlap 937351 937364, overlap 937364 AAAGTACCAGATAGA TTAAAGCCCCGATACT GGT AATATCAGGGCTTTAA AGGGTTTGTTATTTC TERM 1120 937388 - 937364 - R 93 -11.5 -3.91597 | opp_overlap 937364 937351, overlap 937359 ACCAGATAGATTAAA GCCCCGATACT GGT AATATCAGGGC TTTAAAGGGTTTGTT VFMJ11_0900 937738 - 937460 - | ribosomal L25p family protein TERM 1121 937502 - 937524 + g 71 -9.8 -2.79492 | opp_overlap 937502, overlap 937501 AACTTTAGGCTTAAA CGCGTGACGT TGA ACGTCTTGCG GTTTAACCTTAACAA TERM 1122 938204 - 938193 - g 75 -3 -5.31855 | GAGCAAGAACAAAAA TTTG GCAA CAAA AACCAGAGTTTGAAG VFMJ11_0901 937937 - 938362 + | hypothetical protein VFMJ11_0902 940104 - 938380 - | DNA or RNA helicase TERM 1123 941608 - 941598 - g 83 -3.2 -5.54079 | TTAAAAATCAAAAAA TCGC AGA GCAA CTCACTCAAGATATT VFMJ11_0903 940241 - 941788 + | cardiolipin synthetase VFMJ11_0904 942544 - 941870 - | hypothetical protein VFMJ11_0905 943218 - 942595 - | lipoprotein, putative TERM 1124 943449 - 943467 + H 70 -4.6 -4.73297 | overlap 943452 GATTGCTTTAGATAG TTATAAGC TTA GCTTATTA TTTGTTTGTTAATTA TERM 1125 943452 - 943464 + H 74 -6.3 -4.43668 | overlap 943449 TGCTTTAGATAGTTA TAAGC TTA GCTTA TTATTTGTTTGTTAA TERM 1126 943602 - 943588 - H 70 -2.1 -5.31519 | ATAGTTAAAGAAAAA CATCG ATAAA CGATA CAATAGGCGAGTTGC VFMJ11_0906 943669 - 944172 + | hypothetical protein TERM 1127 944203 - 944231 + T 74 -5.4 -4.77036 | overlap 944204 ATTTGAATAGGTGGG TTATTCGCATCA CAAAA TGATGTGAATAC TTTTTAGTGGTGGGA TERM 1128 944204 - 944230 + T 75 -8.9 -3.4574 | overlap 944203 TTTGAATAGGTGGGT TATTCGCATCA CAAAA TGATGTGAATA CTTTTTAGTGGTGGG VFMJ11_0907 945384 - 944296 - | methyl-accepting chemotaxis protein TERM 1129 944716 - 944749 + g 80 -6 -4.70319 | overlap 944717 TACGATGGTTCCAAT TTGTGCCGAAGAGG CCGATA CTTCTTCTGCACAC TTTTGGTTTTCATCG TERM 1130 944717 - 944748 + g 75 -9.5 -3.41107 | overlap 944716 ACGATGGTTCCAATT TGTGCCGAAGAGG CCGATA CTTCTTCTGCACA CTTTTGGTTTTCATC VFMJ11_0908 945734 - 946828 + | filamentation induced by cAMP protein Fic VFMJ11_0909 947044 - 947496 + | hypothetical protein TERM 1131 947522 - 947565 + T 72 -9.1 -2.76671 | opp_overlap 947522, overlap 947519 ATAATAATTAAATTA GTGCTCATATTTATCAGCT TAGAAT AGATGATAAATATGAGCGA TCGGTTTTAGATGAT VFMJ11_0910 949342 - 947597 - | hypothetical protein VFMJ11_0911 950491 - 949352 - | hypothetical protein TERM 1132 949658 - 949687 + g 87 -6.5 -5.28176 | opp_overlap 949658 AACAGTTTCGTGAAA CTTCCATTTGGTA GGGT TAACAATTGGAAG TTTTTTGTAAGTAGC TERM 1133 950427 - 950407 - G 71 -6.1 -4.23723 | CAAGAGTAGGGAAAA GCCCAAATG ATG CACCTGAGC CTATCAATAGATTGA TERM 1134 950648 - 950625 - R 100 -9.6 -5.4833 | CCACCCAACAAAAAA GGGATCCAGC CTAA ACTAGATCCC CCAACATCAAGTCGC TERM 1135 950659 - 950675 + r 81 -5.8 -4.86133 | opp_overlap 950659 ATCCCCCAACATCAA GTCGCA TTCCC TGCGGC TTTTTACTATCTATC secF_1 951602 - 950703 - | protein-export membrane protein SecF secD_1 953429 - 951606 - | protein-export membrane protein SecD TERM 1136 952719 - 952747 + g 80 -4.7 -5.31545 | gap 1 CATGGTTTGAAGGTT TTGCTGTACCGT TAGGTT AC-GTACGGCAA TTTTTTCATCTTCTT TERM 1137 953269 - 953285 + g 73 -6.6 -4.30833 | opp_overlap 953268 953271, overlap 953281 TGTAGTGATACAACC GATGGA ATGTG TCCATC TTTGTTGGTGATTTG VFMJ11_0914 954066 - 953560 - | hypothetical protein VFMJ11_0915 955088 - 954183 - | transcriptional regulator, LysR family VFMJ11_0916 955222 - 956190 + | multidrug resistance protein A VFMJ11_0917 956264 - 957865 + | multidrug resistance protein B TERM 1138 958071 - 958043 - g 72 -3.1 -5.07652 | opp_overlap 958049, overlap 958047 958069 GGCGTGAAAACAAAA GTAACATCTGTAA AAG TAACAGATGATTC AACAGTTGAATGGGA VFMJ11_0918 957938 - 958642 + | ribosomal small subunit pseudouridine synthase A TERM 1139 958674 - 958697 + F 100 -10.2 -5.72616 | opp_overlap 958674 ATCCAATATTAAAAA CGGCGTGGCA TTTA TGTCTCGCCG TTTTTTTGTGTAAAT TERM 1140 958697 - 958674 - f 90 -8 -4.88228 | opp_overlap 958674 ATCCAATATTAAAAA CGGCGTGGCA TTTA TGTCTCGCCG TTTTTTTGTGTAAAT VFMJ11_0919 958857 - 960062 + | bicyclomycin resistance protein (Sulfonamide resistance protein) VFMJ11_0920 960063 - 960743 + | hypothetical protein TERM 1141 960762 - 960781 + T 100 -12.2 -5.70522 | GTTATCGAGATTGGA TGGGCTCT TAGT AGAGCCCA TTTTTTATTCTTCTT VFMJ11_0921 962252 - 960810 - | nucleoside-diphosphate-sugar epimerase TERM 1142 961057 - 961038 - G 79 -5 -5.09685 | opp_overlap 961038, overlap 961040 TAATAGAGATAAAAA TTCGTTGT TTTC ACAACGGA TCACTTTCCAAGAAT VFMJ11_0922 962558 - 963229 + | ABC transporter ATP-binding protein TERM 1143 963703 - 963689 - g 76 -4.3 -5.09895 | TATTGAGTTAAAAAA CCAAT CCAAT ATTGG CCCCGTTATTGTTGA VFMJ11_0923 963210 - 965663 + | ABC transporter permease protein VFMJ11_0924 965663 - 966784 + | hydrolase TERM 1144 967119 - 967132 + G 75 -5.9 -4.78753 | opp_overlap 967119 ACATTGGATTAATGA CGGCC TAAT GGCTG TTTTCTTCCTATTGA TERM 1145 967667 - 967654 - g 73 -6.7 -4.29326 | CTTAAAGGCAATAAA GGTGA GCGT TCACC ACTAAAACACATGGA nhaA 966949 - 968097 + | Na+/H+ antiporter NhaA TERM 1146 968128 - 968148 + F 95 -9 -5.40072 | opp_overlap 968128 ATAAGTTTTGATAAA TACCTCGC AAATA GCGGGGTA TTTTTTTGGACAAAA TERM 1147 968191 - 968168 - f 91 -5.2 -5.93809 | TTTGGACAAAAAAAA GCCCAAACAA TAAA TTGAATGGGC AAAAGGAATATAAGG TERM 1148 968911 - 968898 - g 82 -3.8 -5.4251 | opp_overlap 968898 GGTACAGAGAAAAAA CCAG GTACAG CTGG TTGGTATAACTCTGC VFMJ11_0926 968652 - 969854 + | trans-2-enoyl-CoA reductase TERM 1149 969910 - 969875 - T 100 -12 -5.00136 | opp_overlap 969880 969909, overlap 969880 AAACAAAAGAGAAAA GAAAACCCCAGAGTGA ATGT TCATTCTGGGGTTTTT TATTGGTTCCAATAA TERM 1150 969905 - 969880 - T 100 -11.9 -5.2894 | opp_overlap 969880, overlap 969875 AAAGAGAAAAGAAAA CCCCAGAGTGA ATGT TCATTCTGGGG TTTTTTATTGGTTCC TERM 1151 969880 - 969905 + T 100 -14.1 -5.5604 | opp_overlap 969880 969875 AAAGAGAAAAGAAAA CCCCAGAGTGA ATGT TCATTCTGGGG TTTTTTATTGGTTCC VFMJ11_0927 971619 - 969937 - | putative transport protein TERM 1152 970667 - 970679 + g 77 -7.7 -4.19258 | opp_overlap 970658, overlap 970658 970657 GAAAGACGCTTACCA GCGAT ATT ATCGC TTTTAACTACGATCT TERM 1153 971737 - 971718 - R 100 -6.4 -6.31682 | opp_overlap 971713 971718 AAAATCAAAAAAAAA TCACCGTT TGGG AGCGGTGA TTTAATTTTATAAAT TERM 1154 971718 - 971737 + r 89 -8.6 -4.27483 | opp_overlap 971718, overlap 971713 AAAATCAAAAAAAAA TCACCGTT TGGG AGCGGTGA TTTAATTTTATAAAT grxA 972029 - 971766 - | glutaredoxin, GrxA family VFMJ11_0929 972998 - 972141 - | HTH-type transcriptional regulator HexR TERM 1155 972852 - 972871 + g 71 -6.4 -4.1899 | opp_overlap 972863 AAAACGGTTTACCGT TGGCTCAC TAAC GTCAGCCA TTTTAGCTAAAGTGG TERM 1156 973026 - 973074 + r 79 -9.1 -3.41836 | opp_overlap 973031 973032, overlap 973028 973031 973032 ACATTTTTAATTTGA TATAACCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGATTATC TGTTTGAATAAGTAT TERM 1157 973028 - 973072 + r 87 -11.7 -3.27676 | opp_overlap 973031 973032, overlap 973026 973031 973032 ATTTTTAATTTGATA TAACCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGATTA TCTGTTTGAATAAGT TERM 1158 973031 - 973069 + r 79 -9 -3.77303 | opp_overlap 973031 973032, overlap 973028 973026 973032 TTTAATTTGATATAA CCTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAGA TTATCTGTTTGAATA TERM 1159 973032 - 973068 + r 86 -12.5 -2.85659 | opp_overlap 973032 973031, overlap 973031 973028 973026 TTAATTTGATATAAC CTTAACCAGAGTGATTT GAA AAGACACTTTGGTTAAG ATTATCTGTTTGAAT TERM 1160 973189 - 973170 - R 76 -6.5 -4.61633 | opp_overlap 973169 973170 ACAGATCTCTAAAAA CACTTTC AATTTA GAAAGTG ATTTTTCGGTGTAAA TERM 1161 973311 - 973278 - R 100 -9.1 -5.38249 | opp_overlap 973282, overlap 973280 ATGAATTACAAAAAA GATAGGTTGTTTTAC ATTC ATAAAACAACCTATA TGAGGGGGTTAGTGA TERM 1162 973309 - 973280 - R 100 -11.7 -4.31563 | opp_overlap 973282, overlap 973278 GAATTACAAAAAAGA TAGGTTGTTTTAC ATTC ATAAAACAACCTA TATGAGGGGGTTAGT TERM 1163 973282 - 973307 + r 73 -9.2 -2.87881 | opp_overlap 973280 973278 ATTACAAAAAAGATA GGTTGTTTTA CATTCA TAAAACAACC TATATGAGGGGGTTA VFMJ11_0930 974963 - 973320 - | glutamate decarboxylase VFMJ11_0931 975650 - 975138 - | hypothetical protein VFMJ11_0932 976674 - 975787 - | membrane protein TERM 1164 975834 - 975822 - G 73 -7.7 -3.96447 | GCATCAAAAAAGGAA CTGAG AGA CTCAG TATAAAACCACTGAC VFMJ11_0933 977700 - 976777 - | hdod domain family protein TERM 1165 977319 - 977337 + g 73 -5.4 -4.56736 | ACGCGTTACACTCGC TATTTAAG TCA CTTGAATA TTTTAATTGTTCGAT VFMJ11_0934 978119 - 978703 + | DNA transformation protein TfoX TERM 1166 978765 - 978725 - T 93 -6.9 -5.626 | opp_overlap 978725 TATTTCATAAAAAAA CCTCGTTATACCGAAAC AAATAAA GTTAAGGGATAACGAGG TTTTTTTTGTATTTA TERM 1167 978725 - 978765 + T 100 -6.9 -6.15717 | opp_overlap 978725 TATTTCATAAAAAAA CCTCGTTATACCGAAAC AAATAAA GTTAAGGGATAACGAGG TTTTTTTTGTATTTA VFMJ11_0935 979344 - 978796 - | hypothetical protein VFMJ11_0936 979620 - 980921 + | lipoprotein, putative TERM 1168 980942 - 980961 + F 95 -8.6 -5.65513 | opp_overlap 980942 TTATATTTATACAAA TAGCTCAC TTTG GTGGGCTA TTTTTTTAATTAATA TERM 1169 981518 - 981506 - g 72 -3.3 -5.05782 | opp_overlap 981506 981506, overlap 981507 ATTGATGGTAAAAAA GCGGT TCA ACCGG CTTCTGAGTGGGCAT serC 981119 - 982201 + | phosphoserine aminotransferase TERM 1170 982231 - 982256 + T 100 -9.1 -5.75478 | opp_overlap 982231 AACTGATACAAAAAA GCCGATATGAT GATG GTTATATCGGC TTTTTTTATATCCTT TERM 1171 982256 - 982231 - T 84 -6.2 -5.38951 | opp_overlap 982231 AACTGATACAAAAAA GCCGATATGA TGATGG TTATATCGGC TTTTTTTATATCCTT VFMJ11_0938 984013 - 982292 - | ABC transporter, CydDC-E family, permease/ATP-binding protein CydC cydD 985778 - 984006 - | ABC transporter, CydDC-E family, permease/ATP-binding protein CydD TERM 1172 985891 - 985910 + r 80 -9.3 -3.66654 | opp_overlap 985891 GATGAGCAAAAGAAA CCCGAAG CATTAA CTTCGGG TTTAACGTTAACATA TERM 1173 985910 - 985891 - R 100 -10 -4.73614 | opp_overlap 985891 GATGAGCAAAAGAAA CCCGAAGC ATTA ACTTCGGG TTTAACGTTAACATA trxB 986897 - 985932 - | thioredoxin-disulfide reductase ald 988162 - 987044 - | alanine dehydrogenase VFMJ11_0942 988319 - 988810 + | leucine-responsive regulatory protein TERM 1174 988915 - 988946 + F 93 -8 -5.54907 | gap 1, opp_overlap 988918 988921, overlap 988919 988921 GTAATTACTATTAAG TAATGACGAGCGGCG TAG TGCCGCTCGAC-TTG TTTTTATTTTATAGA TERM 1175 988944 - 988918 - f 79 -9.3 -3.41961 | opp_overlap 988915 988919 988921, overlap 988921 ATTACTATTAAGTAA TGACGAGCGGC GTAGT GCCGCTCGACT TGTTTTTATTTTATA TERM 1176 988919 - 988943 + F 100 -13.5 -4.82111 | opp_overlap 988918 988921, overlap 988915 988921 TTACTATTAAGTAAT GACGAGCGGCG TAG TGCCGCTCGAC TTGTTTTTATTTTAT TERM 1177 988941 - 988921 - f 93 -14 -2.86164 | opp_overlap 988921 988919 988915, overlap 988918 ACTATTAAGTAATGA CGAGCGGC GTAGT GCCGCTCG ACTTGTTTTTATTTT TERM 1178 988921 - 988941 + F 95 -14.7 -2.64923 | opp_overlap 988918 988921, overlap 988919 988915 ACTATTAAGTAATGA CGAGCGGCG TAG TGCCGCTCG ACTTGTTTTTATTTT VFMJ11_0943 989033 - 992464 + | DNA translocase FtsK TERM 1179 992907 - 992897 - g 73 -6.8 -4.25283 | ACGGTTTCACCAAAA GCAG ATT CTGC CGTAAAAAGTGAATT lolA 992492 - 993088 + | outer membrane lipoprotein carrier protein LolA TERM 1180 993152 - 993170 + G 100 -14.6 -3.21747 | TTAGATTTTTCAGCA GGGGACGA TTA TCGTCCCC TTGCTGCTAGAATGC VFMJ11_0945 993122 - 994468 + | ATPase, AAA family serS 994590 - 995897 + | seryl-tRNA synthetase TERM 1181 995962 - 995935 - T 100 -14.3 -4.97461 | opp_overlap 995935 AATAAATAGTAAAAA GCCCCTTTATG CAGAGT CATAAAGGGGC TTTTTGTTTGTCTGC TERM 1182 995935 - 995962 + T 100 -14.3 -5.42975 | opp_overlap 995935 AATAAATAGTAAAAA GCCCCTTTATG CAGAGT CATAAAGGGGC TTTTTGTTTGTCTGC VFMJ11_0947 996420 - 995986 - | thioredoxin-2 TERM 1183 996572 - 996541 - R 82 -8.9 -4.05926 | opp_overlap 996548, overlap 996548 CAATAAATTCAGAAA TAAAAAAGGAGCA AATGAA TGCTCCTTTTTAA CAATATGGTAGGGGA TERM 1184 996565 - 996548 - R 93 -7 -5.72622 | opp_overlap 996548, overlap 996541 TTCAGAAATAAAAAA GGAGCA AATGAA TGCTCC TTTTTAACAATATGG TERM 1185 996548 - 996565 + r 80 -7 -4.61231 | opp_overlap 996541 996548 TTCAGAAATAAAAAA GGAGCA AATGAA TGCTCC TTTTTAACAATATGG VFMJ11_0948 996916 - 996593 - | protein VV1_3059 TERM 1186 996831 - 996851 + g 73 -10.5 -2.91593 | overlap 996830 AAAGCAACATCTGCA GGTTCAAGA TTG TCTTGAGCC ATTTCTAGGAAGATA TERM 1187 998164 - 998186 + G 73 -7 -4.22375 | AAGAACACTAATGGT GCTGGTGATG GTG CATTATCGGC TTTATTACATGATAT VFMJ11_0949 997099 - 998403 + | inosine-guanosine kinase TERM 1188 998437 - 998457 + T 100 -12.6 -5.30616 | opp_overlap 998437 CAAACAATAAAAAAA CGGAAGCC TCAGT GGCTTCCG TTTTTGTTTAGGTAA TERM 1189 998457 - 998437 - T 100 -12.6 -6.01369 | opp_overlap 998437 CAAACAATAAAAAAA CGGAAGCC TCAGT GGCTTCCG TTTTTGTTTAGGTAA VFMJ11_0950 999361 - 998486 - | aldose 1-epimerase TERM 1190 999241 - 999229 - G 86 -7.7 -4.89567 | GCGTAAAAGATAAAA CATGG CCA CCATG AAGAGAAATGGCTGC TERM 1191 999492 - 999475 - R 90 -8.4 -5.28176 | opp_overlap 999475 TGCAGGTATAAAAAA GGCGAC AATTAA GTCGCC TTTCATGCTTAAAAG TERM 1192 999475 - 999492 + r 75 -8.4 -3.84246 | opp_overlap 999475 TGCAGGTATAAAAAA GGCGAC AATTAA GTCGCC TTTCATGCTTAAAAG gap_1 1000551 - 999556 - | glyceraldehyde-3-phosphate dehydrogenase, type I msrB 1000888 - 1001295 + | methionine-R-sulfoxide reductase TERM 1193 1001315 - 1001331 + T 83 -5.1 -5.55695 | opp_overlap 1001307 1001315, overlap 1001308 ATATAAATAAAAAAA GGAGC GCATTAG GCTCC TTTTTTATGTTGTTA TERM 1194 1001331 - 1001315 - T 93 -5.1 -6.04953 | opp_overlap 1001315 1001308, overlap 1001307 ATATAAATAAAAAAA GGAGC GCATTAG GCTCC TTTTTTATGTTGTTA VFMJ11_0953 1002200 - 1001358 - | lipoprotein, putative VFMJ11_0954 1002324 - 1002608 + | general negative regulator of transcription subunit 1 VFMJ11_0955 1002755 - 1002904 + | hypothetical protein VFMJ11_0956 1003786 - 1002926 - | ion transport protein TERM 1195 1004110 - 1004123 + H 74 -5.3 -4.7173 | opp_overlap 1004121 TTTTGCATTAAGTAT GTGAT ATAA ATCAC TTTTTAAATGTGCTA VFMJ11_0957 1004369 - 1007044 + | aldehyde-alcohol dehydrogenase 2 TERM 1196 1007095 - 1007128 + T 93 -14.1 -2.90982 | opp_overlap 1007102, overlap 1007102 TTTGAAAGTGATAAA TAAGAAAGCCACCTA ATAT TAGGTGGCTTTTTTG TATCTAGCGATTTGT TERM 1197 1007102 - 1007121 + T 100 -12.2 -5.4251 | opp_overlap 1007102, overlap 1007095 GTGATAAATAAGAAA GCCACCTA ATAT TAGGTGGC TTTTTTGTATCTAGC TERM 1198 1007121 - 1007102 - T 100 -12.2 -4.63048 | opp_overlap 1007102 1007095 GTGATAAATAAGAAA GCCACCTA ATAT TAGGTGGC TTTTTTGTATCTAGC VFMJ11_0958 1007903 - 1007232 - | short chain dehydrogenase VFMJ11_0959 1008632 - 1008126 - | SSU ribosomal protein S4P TERM 1199 1008398 - 1008412 + g 71 -7.2 -3.92373 | GAGAATAACTTTCTT CATTAC TAC GTAATG TTTGTGCATCAGCTA TERM 1200 1008443 - 1008461 + g 91 -6 -5.38249 | ACTGAAAGCGTTGAC GTAACAGA TCT TCAGTTAC TTTTTTCTCGTTAAT TERM 1201 1008789 - 1008770 - R 84 -5.7 -5.5074 | opp_overlap 1008770 GAAGGTAATAAAAAA GGCCAGT ATAAAA ACTGACC TTTGAAGTGTTTAGT TERM 1202 1008801 - 1008819 + r 76 -7.4 -4.05446 | GACCTTTGAAGTGTT TAGTCGCA AGA TGCGTCTA TTTATAATTCAAAAA VFMJ11_0960 1009419 - 1008835 - | superoxide dismutase (Fe) VFMJ11_0961 1009654 - 1009989 + | putative glutaredoxin family protein TERM 1203 1010030 - 1010011 - T 100 -12.2 -5.252 | opp_overlap 1010011 TATTTTCATAAAAAA GCCACGTT ATTA AACGTGGC TTTTTTTATTTGGTT TERM 1204 1010011 - 1010030 + T 100 -12.2 -6.01187 | opp_overlap 1010011 TATTTTCATAAAAAA GCCACGTT ATTA AACGTGGC TTTTTTTATTTGGTT VFMJ11_0962 1011373 - 1010054 - | response regulator receiver domain protein TERM 1205 1011478 - 1011511 + r 87 -6.7 -5.47218 | opp_overlap 1011486, overlap 1011486 TTTTTGATCTTTATG CAAAAAAACGGCAGA AACA TCTGCCGTTTTAACG TTTTTTTAAATAAAA TERM 1206 1011486 - 1011503 + r 100 -11.3 -4.35095 | opp_overlap 1011486, overlap 1011478 CTTTATGCAAAAAAA CGGCAGA AACA TCTGCCG TTTTAACGTTTTTTT TERM 1207 1011503 - 1011486 - R 100 -11.3 -5.47218 | opp_overlap 1011486 1011478 CTTTATGCAAAAAAA CGGCAGA AACA TCTGCCG TTTTAACGTTTTTTT TERM 1208 1011542 - 1011528 - R 76 -3.6 -5.27335 | TTTTTTAAATAAAAA TGCAAT TCA ATTACA TTATAGAACCATTGC VFMJ11_0963 1012871 - 1011543 - | transport protein rnt 1013586 - 1012918 - | ribonuclease T TERM 1209 1012994 - 1013012 + g 93 -7.4 -5.43414 | opp_overlap 1012992 1012994, overlap 1013004 CATTTATTCACAATA CGACAGAA TAG TTCTGCCG TTTTTTCTGTATCAT TERM 1210 1013012 - 1012994 - G 73 -9.6 -3.254 | opp_overlap 1012994 1013004, overlap 1012992 CATTTATTCACAATA CGACAGAA TAG TTCTGCCG TTTTTTCTGTATCAT VFMJ11_0965 1013773 - 1014651 + | sodium-type flagellar protein MotY TERM 1211 1014671 - 1014705 + T 82 -9.6 -3.60419 | gap 1, opp_overlap 1014679, overlap 1014679 TCGTTTTAAAATAGC TATAAAAAGACGCCT CATTGT AGGCGTCTTTTT-TA TTGTAATTTGAAACT TERM 1212 1014679 - 1014698 + T 100 -9.3 -5.59534 | opp_overlap 1014679, overlap 1014671 AAATAGCTATAAAAA GACGCCT CATTGT AGGCGTC TTTTTTATTGTAATT TERM 1213 1014698 - 1014679 - T 100 -9.3 -4.92363 | opp_overlap 1014679 1014671 AAATAGCTATAAAAA GACGCCT CATTGT AGGCGTC TTTTTTATTGTAATT VFMJ11_0966 1015137 - 1014703 - | hypothetical protein TERM 1214 1015246 - 1015230 - R 86 -5.1 -5.60993 | opp_overlap 1015230 TTGTGTATAAAAAAA CCTGC CTAGATC GCAGG TTTTTTACTATAAGG TERM 1215 1015230 - 1015246 + r 80 -5.1 -5.21709 | opp_overlap 1015230 TTGTGTATAAAAAAA CCTGC CTAGATC GCAGG TTTTTTACTATAAGG gloA_1 1015696 - 1015280 - | lactoylglutathione lyase nth 1016356 - 1015721 - | endonuclease III VFMJ11_0969 1017098 - 1016415 - | electron transport complex protein RnfE TERM 1216 1017121 - 1017139 + r 72 -8.2 -3.4791 | overlap 1017124 TCTCACAATTCAATG GAAGAGTT AGT AGCTCTTC TTGATGTGTTTTATA VFMJ11_0970 1017730 - 1017098 - | electron transport complex protein RnfG VFMJ11_0971 1018730 - 1017735 - | electron transport complex protein RnfD TERM 1217 1017955 - 1017945 - G 79 -3.2 -5.5112 | GGTAGCAATAAAAAA TGCC CCT AGCA TGGTTGCGCCAGAAA VFMJ11_0972 1021147 - 1018793 - | electron transport complex protein RnfC TERM 1218 1018854 - 1018867 + g 88 -8.1 -5.0538 | GCACGAGCGATAGCG GCAGC GACG GCTGC TTTTTTCGGATCAGC TERM 1219 1018983 - 1018996 + g 88 -8.1 -5.07567 | opp_overlap 1018980 GCACGAGCAATAGCG GCAGC GACG GCTGC TTTTTTCGGATCTAC TERM 1220 1019112 - 1019125 + g 88 -8.1 -5.0538 | opp_overlap 1019109 GCACGAGCAATAGCG GCAGC GACG GCTGC TTTTTTCGGGTCAGC TERM 1221 1019241 - 1019254 + g 79 -5.9 -5.00616 | opp_overlap 1019238, overlap 1019248 GCACGAGCAATAGCG GCGGC GACG GCTGC TTTTTTCGGAGCAGC TERM 1222 1019427 - 1019437 + g 81 -5.4 -5.10033 | GCTGTTGTTTCTTCT GCAA GTT TTGC TTTTCTTTCTCTTGC TERM 1223 1019520 - 1019530 + g 76 -6.8 -4.43392 | GAAGCCTCTGATTTC GCAG CCT CTGC TTGTTTTGCTTTTGC TERM 1224 1020120 - 1020149 + g 76 -9.3 -3.66897 | opp_overlap 1020120 1020124, overlap 1020124 GTAAAGCCCATTAAT GAACCGCCCATGA TGAT TCGTGGGTGTTTC TTATCTGCTTTATAG TERM 1225 1020124 - 1020145 + g 85 -8.7 -4.43624 | opp_overlap 1020124 1020120, overlap 1020120 AGCCCATTAATGAAC CGCCCATGA TGAT TCGTGGGTG TTTCTTATCTGCTTT VFMJ11_0973 1021735 - 1021151 - | electron transport complex protein RnfB TERM 1226 1021692 - 1021667 - G 73 -8.4 -3.68619 | TTTAATTGATGCAAA CCCCAGTATT AAGCCA AATACTAGGG CAAGAGCAGCAATAG VFMJ11_0974 1022235 - 1021738 - | na+-translocating NADH-quinone reductase subunit e TERM 1227 1022424 - 1022443 + H 78 -7.8 -4.11692 | opp_overlap 1022424 TTTAAGTAAAAAAAA GCCTCGTC GTTA GACAAGGC TTTTAAAAGTGGCTC TERM 1228 1022443 - 1022424 - H 100 -10 -5.95166 | opp_overlap 1022424 TTTAAGTAAAAAAAA GCCTCGTC GTTA GACAAGGC TTTTAAAAGTGGCTC TERM 1229 1022819 - 1022847 + H 83 -10.5 -3.17608 | overlap 1022817 GATAAGGGTTGTGGG TAGTTATCCAC TAAAACT GTGGATAACTA TGTTAATGGATCTTT uvrB 1023143 - 1025173 + | excinuclease ABC, B subunit TERM 1230 1025228 - 1025199 - f 93 -7.9 -5.69473 | opp_overlap 1025202, overlap 1025202 TATAGCAGAAAAAAA GAAGCCAACCG CAATATCC CGGTTGGCTTT ATTGTTCATGTGAAA TERM 1231 1025225 - 1025202 - f 100 -9.6 -4.9041 | opp_overlap 1025202, overlap 1025199 AGCAGAAAAAAAGAA GCCAACCG CAATATCC CGGTTGGC TTTATTGTTCATGTG TERM 1232 1025202 - 1025225 + F 100 -9.6 -4.5032 | opp_overlap 1025199 1025202 AGCAGAAAAAAAGAA GCCAACCG CAATATCC CGGTTGGC TTTATTGTTCATGTG VFMJ11_0978 1025467 - 1026897 + | transcriptional regulatory protein ZraR VFMJ11_0979 1026908 - 1027243 + | LuxU VFMJ11_0980 1028110 - 1027232 - | protein YbhK TERM 1233 1028551 - 1028568 + G 73 -8.5 -3.7456 | TACTTACGATTATCA GTTACAG ACGT CTGTAAC TTTAAATGTACTTAT moaA 1028494 - 1029483 + | molybdenum cofactor biosynthesis protein A TERM 1234 1029534 - 1029519 - g 72 -9 -3.2794 | TTTTACTCATATTAA TGCCTC TGGT GAGGCA AACATGGTTGATGTT TERM 1235 1029719 - 1029701 - g 82 -3.8 -5.41746 | opp_overlap 1029702 1029703, overlap 1029703 AAGCGGCCAAAAAAA CATGGGAT TTA ATCCCACT TTGTCATCCTCTATT TERM 1236 1029717 - 1029703 - g 85 -8.6 -4.34482 | opp_overlap 1029703 1029702, overlap 1029701 GCGGCCAAAAAAACA TGGGAT TTA ATCCCA CTTTGTCATCCTCTA moaC 1029496 - 1029975 + | molybdenum cofactor biosynthesis protein C moaD 1029972 - 1030217 + | molybdopterin converting factor, subunit 1 moaE 1030219 - 1030665 + | molybdopterin converting factor, subunit 2 TERM 1237 1030728 - 1030703 - T 100 -11.9 -5.38054 | opp_overlap 1030703 CGGTATAAAGAAAAA GGGAAGACAGC ATCA GCTCTCTTCCC TTTTTTAATGTTATA TERM 1238 1030703 - 1030728 + T 100 -11.9 -5.30189 | opp_overlap 1030703 CGGTATAAAGAAAAA GGGAAGACAGC ATCA GCTCTCTTCCC TTTTTTAATGTTATA TERM 1239 1030740 - 1030768 + T 70 -6.9 -3.73122 | gap 1, opp_overlap 1030746, overlap 1030734 1030746 TCCCTTTTTTAATGT TATAGACCCTAC AAACAA GTAGGG-CTATA TATTATTTGTTATAA VFMJ11_0985 1031736 - 1030771 - | putative alpha-L-glutamate ligase family protein VFMJ11_0986 1033248 - 1031740 - | hypothetical protein TERM 1240 1033301 - 1033340 + r 76 -7.4 -3.9392 | gap 1, opp_overlap 1033300 ATAATTGTAATTCAT GCGGTAATTTATGCTACTA AGA TA-TTGAATAAATTACCGC TTATTTGAGGTAGGA VFMJ11_0987 1034127 - 1033357 - | ATP-dependent Zn protease TERM 1241 1034195 - 1034177 - R 83 -8.1 -4.4204 | AATAACGATAATAAA TGGGAGC GAATA GCCCCCA AATGTTAAAGTTTAG VFMJ11_0988 1035181 - 1034207 - | methyltransferase, putative TERM 1242 1034740 - 1034718 - G 70 -3.5 -4.96773 | gap 1 TGAATTAAAAACAAA TGTGATGGAT CAAT ACCCA-CACA CAAACGAGCTTCTTC TERM 1243 1035026 - 1035036 + g 93 -6.8 -5.41746 | GATATTATCAGCGCA TCCC TCA GGGA TTTTTTTCAACGCTT VFMJ11_0989 1035946 - 1035218 - | methyltransferase, putative TERM 1244 1037983 - 1037973 - g 73 -5.4 -4.52589 | opp_overlap 1037973 TTGTGGTACAGAAAA CATC CGT GATG TTATCGCGTTCCCGA aspS 1036333 - 1038108 + | aspartyl-tRNA synthetase TERM 1245 1038127 - 1038161 + F 80 -10.3 -2.99545 | gap 1, opp_overlap 1038134, overlap 1038134 GCGTTTAACTCTTTG TA-AAAAATGCCCGTA TTTA TGCGGGCATTTTTGTA TCTATACTATGTAAA TERM 1246 1038153 - 1038134 - f 88 -7.8 -5.00884 | opp_overlap 1038127 1038134 ACTCTTTGTAAAAAA TGCCCGTA TTTA TGCGGGCA TTTTTGTATCTATAC TERM 1247 1038134 - 1038153 + F 100 -10 -5.07275 | opp_overlap 1038134, overlap 1038127 ACTCTTTGTAAAAAA TGCCCGTA TTTA TGCGGGCA TTTTTGTATCTATAC TERM 1248 1038494 - 1038482 - g 73 -5.5 -4.60041 | ATTTATGTCGAAAAA TGCCG ACT CAGCA TTAAAGCTTGGTCAA ruvC 1038261 - 1038782 + | crossover junction endodeoxyribonuclease RuvC TERM 1249 1038824 - 1038839 + F 78 -7.6 -4.2602 | TTCTCATTTCTTTTA CTGGAT ATCT ATCCAG TTCTTTATTACTATC ruvA 1038888 - 1039511 + | holliday junction DNA helicase RuvA ruvB 1039540 - 1040553 + | holliday junction DNA helicase RuvB TERM 1250 1040638 - 1040617 - f 70 -7.3 -3.75153 | opp_overlap 1040618, overlap 1040618 CTGGGTTAATTGAAA GCGAGTGAT CAAA ATCACTCGT TTTTTCGTATATGGA TERM 1251 1040618 - 1040637 + F 100 -10.8 -5.24989 | opp_overlap 1040617 1040618 TGGGTTAATTGAAAG CGAGTGAT CAAA ATCACTCG TTTTTTCGTATATGG TERM 1252 1040637 - 1040618 - f 81 -10.8 -2.84878 | opp_overlap 1040618, overlap 1040617 TGGGTTAATTGAAAG CGAGTGAT CAAA ATCACTCG TTTTTTCGTATATGG VFMJ11_0994 1040932 - 1042521 + | cytochrome D ubiquinol oxidase subunit 1 TERM 1253 1042892 - 1042878 - g 76 -7.1 -4.26305 | opp_overlap 1042878, overlap 1042874 1042872 AAAATTGAAGATAAA CGCTG GCGTT CAGCG TGGGATGCAGCGATC cydB 1042539 - 1043675 + | cytochrome D ubiquinol oxidase, subunit II VFMJ11_0996 1043788 - 1044090 + | Cyd operon protein YbgE TERM 1254 1044132 - 1044161 + F 100 -13.1 -6.10489 | AAACATAATATTGAG TGGTTTGTTACTT ATTT AAGTGACAAACCA TTTTTTTTTACGATT TERM 1255 1044635 - 1044645 + G 75 -5.4 -4.77173 | opp_overlap 1044629 TTATGAAACCAACGG CGAT CCC ATCG TTTATTTTATCGGAG ybgC 1044274 - 1044678 + | tol-pal system-associated acyl-CoA thioesterase TERM 1256 1044934 - 1044964 + G 79 -10.6 -3.13403 | overlap 1044932 1044938 TTATTCAGGTTTTAA CGAATTTGCTCG TTTATCT CGAGTAAATTCG TCTTCATCAGAAGCG tolQ 1044668 - 1045354 + | protein TolQ VFMJ11_0999 1045354 - 1045800 + | TolR protein TERM 1257 1046316 - 1046300 - g 87 -5.1 -5.38054 | GCGGACAAAGAAAAA GCAGC GAAAGAG GCTGC TAAGAAAGCGCAATT tolA 1045817 - 1046857 + | protein TolA tolB 1046868 - 1048220 + | Tol-Pal system beta propeller repeat protein TolB VFMJ11_1002 1048256 - 1048822 + | peptidoglycan-associated lipoprotein VFMJ11_1003 1048848 - 1049621 + | Tol system periplasmic component YbgF TERM 1258 1049670 - 1049656 - f 100 -11.4 -4.45168 | opp_overlap 1049656 TTTTTAAAACATAAA GGAGCC TAT GGCTCC TTTTTTATTTCCCCT TERM 1259 1049656 - 1049670 + F 100 -11.4 -5.64421 | opp_overlap 1049656 TTTTTAAAACATAAA GGAGCC TAT GGCTCC TTTTTTATTTCCCCT nadA 1049753 - 1050802 + | quinolinate synthetase complex, A subunit TERM 1260 1050827 - 1050847 + T 100 -15.5 -6.17669 | opp_overlap 1050827 TGTTTTATATAAAAA TGGCGACCA GTG TGGTCGCCA TTTTTTTATTTTATT TERM 1261 1050847 - 1050827 - T 100 -15.5 -4.96848 | opp_overlap 1050827 TGTTTTATATAAAAA TGGCGACCA GTG TGGTCGCCA TTTTTTTATTTTATT VFMJ11_1005 1051310 - 1050858 - | hypothetical protein VFMJ11_1006 1051527 - 1052306 + | hypothetical protein VFMJ11_1007 1052822 - 1052343 - | ATP-dependent Zn protease VFMJ11_1008 1052992 - 1053108 + | hypothetical protein VFMJ11_1009 1053101 - 1054114 + | transcriptional regulator, AraC family VFMJ11_1010 1054291 - 1055667 + | amidohydrolase TERM 1262 1055689 - 1055709 + F 75 -9.8 -2.5937 | overlap 1055688 1055691 ATGTACCTTTTTGTA TAGCCTAC TTAAT GTAGGCTA GTTATAAGGATCTGT VFMJ11_1011 1055726 - 1056367 + | hypothetical protein VFMJ11_1012 1056385 - 1057656 + | carbohydrate-selective porin OprB TERM 1263 1057664 - 1057722 + F 100 -17.3 -5.65513 | gap 1, opp_overlap 1057664 TTATATAAATAGAAA GGCGTCTAATAACTTAAATAAG-CATTA ATTT TAATGGCTTATTTAAGTTGCTAGATGCC TTTTTTTGGTTGCTG TERM 1264 1057722 - 1057664 - f 100 -15.1 -4.43283 | gap 1, opp_overlap 1057664 TTATATAAATAGAAA GGCGTCTAATAACTTAAATAAG-CATTA ATTT TAATGGCTTATTTAAGTTGCTAGATGCC TTTTTTTGGTTGCTG VFMJ11_1013 1057854 - 1059113 + | amidohydrolase VFMJ11_1014 1060138 - 1059131 - | transcriptional regulator, AraC family VFMJ11_1015 1060405 - 1061532 + | secretion protein HlyD family protein TERM 1265 1061575 - 1061599 + G 71 -6.4 -4.25056 | overlap 1061571 TAAGATACTGAGATA CACGGTAGGG GTAGG TCTTGCCGTG TTTCTTGCTGCACTA TERM 1266 1061906 - 1061918 + G 70 -2.6 -5.06414 | ATGGCGATATCCAAT CCGG GTATG TCGG TTTTTCTTGCGACAG VFMJ11_1016 1061522 - 1062541 + | hypothetical protein VFMJ11_1017 1062567 - 1063628 + | hipothetical membrane protein VFMJ11_1018 1063631 - 1064284 + | ion transport 2 domain protein VFMJ11_1019 1064879 - 1064340 - | ABC-type multidrug transport system, ATPase and permease component TERM 1267 1065246 - 1065284 + r 100 -14.8 -5.42198 | opp_overlap 1065255, overlap 1065255 GGTAGGGTATTGCGG ATATAAAAATGGCGACCA GTG TGGTCGCCATTTTTGTGA TTTTATTTTTTGGAC TERM 1268 1065275 - 1065255 - R 100 -15.5 -4.96848 | opp_overlap 1065255 1065246 TTGCGGATATAAAAA TGGCGACCA GTG TGGTCGCCA TTTTTGTGATTTTAT TERM 1269 1065255 - 1065275 + r 100 -15.5 -5.10601 | opp_overlap 1065255, overlap 1065246 TTGCGGATATAAAAA TGGCGACCA GTG TGGTCGCCA TTTTTGTGATTTTAT VFMJ11_1020 1065895 - 1065305 - | YecA family protein TERM 1270 1065715 - 1065738 + g 73 -6.8 -4.15044 | opp_overlap 1065731 CATAAGCTTCTAGAT CTTCTGCATT AGTA AATGGAGAAG TTTCTTCACCACCCC VFMJ11_1021 1066206 - 1066658 + | membrane protein TERM 1271 1066685 - 1066706 + F 100 -13.1 -5.72622 | opp_overlap 1066685 TATGTTATAGATAGA GCCAGCATA TAAT TATGCTGGC TTTTTTGTTTATAAC TERM 1272 1066706 - 1066685 - f 88 -13.1 -3.05498 | opp_overlap 1066685 TATGTTATAGATAGA GCCAGCATA TAAT TATGCTGGC TTTTTTGTTTATAAC TERM 1273 1066933 - 1066954 + F 100 -12.3 -4.96106 | ACCGCCACATTTTAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATTTATA VFMJ11_1023 1067101 - 1067487 + | potential redox protein VFMJ11_1024 1067522 - 1068229 + | C factor cell-cell signaling protein hflX_1 1068436 - 1069794 + | GTP-binding protein HflX TERM 1274 1069835 - 1069856 + F 88 -7.3 -4.96106 | opp_overlap 1069835 ACCTATTTAAGTTAA GCCTTAGCA GAAA TGTTGAGGC TTTTTCGTATTTATA sigZ_1 1069971 - 1070516 + | RNA polymerase sigma factor, SigZ family TERM 1275 1070542 - 1070566 + F 81 -8 -4.15143 | TCTTTTTCAACTGGA CGGTAAGTAA ACGCA TTATTTACCG TTTGTCTAATTACTT gshA_2 1070673 - 1072271 + | glutamate--cysteine ligase TERM 1276 1072336 - 1072361 + G 85 -9.1 -4.29929 | gap 1 CGCCAGTACATTATC GCCATCA-TTGC ATT GCAAGTGGTGGC TTTATTAAGTTTGGT TERM 1277 1072763 - 1072776 + G 71 -6.7 -4.02315 | GTGAGCTTACTGCAG TGGCA TTAT TGCCA TTTCCATTTTTGGTT VFMJ11_1028 1072312 - 1074075 + | ABC transporter, ATP-binding protein VFMJ11_1029 1074068 - 1075885 + | multidrug resistance ABC transporter ATP-binding and permease protein VFMJ11_1030 1075910 - 1077370 + | glutathione synthetase VFMJ11_1031 1077500 - 1077733 + | hypothetical protein TERM 1278 1077859 - 1077869 + G 72 -3.2 -5.06414 | AGAAATCCGTTCTAT TCGA GAT TCGG TTTTTATTCAAGAGC VFMJ11_1032 1077800 - 1078222 + | acetyltransferase TERM 1279 1078232 - 1078258 + T 85 -8.9 -4.21141 | opp_overlap 1078232 AAGTAGTTATTTAAA GGTTCTTATTA AAAAG TGATAAGAACC TTTCCTTTATTAACC VFMJ11_1033 1079280 - 1078240 - | quinone oxidoreductase TERM 1280 1079307 - 1079328 + r 100 -11.7 -4.87626 | opp_overlap 1079307 ATACCTATTAAAAAA GCACAACAT ACTT ATGTTGTGC TTTTTAGTATTCAAG TERM 1281 1079328 - 1079307 - R 100 -11.7 -5.17353 | opp_overlap 1079307 ATACCTATTAAAAAA GCACAACAT ACTT ATGTTGTGC TTTTTAGTATTCAAG VFMJ11_1034 1079669 - 1079352 - | hypothetical protein VFMJ11_1035 1080893 - 1079733 - | transporter, MFS superfamily VFMJ11_1036 1081133 - 1081768 + | alternative oxidase 2 TERM 1282 1081777 - 1081805 + T 100 -11.9 -5.85244 | opp_overlap 1081757 1081774 1081777 1081779 CTCTTAATAAGAGTA GAGCAGTATTTGT TAT GTAAATACTGCTC TTTTTTATTTTGGTT TERM 1283 1081805 - 1081777 - T 79 -10.5 -2.85545 | opp_overlap 1081777, overlap 1081757 1081774 1081779 CTCTTAATAAGAGTA GAGCAGTATTT GTTATGT AAATACTGCTC TTTTTTATTTTGGTT VFMJ11_1037 1082676 - 1081819 - | transporter, drug/metabolite exporter family TERM 1284 1082771 - 1082756 - R 100 -9 -6.04953 | opp_overlap 1082752 1082749 1082756 AGACAAATAAAAAAA GGCTGA AGAG TCAGCC TTAGTTATTTTTAGA TERM 1285 1082756 - 1082771 + r 79 -9 -3.74868 | opp_overlap 1082756, overlap 1082752 1082749 AGACAAATAAAAAAA GGCTGA AGAG TCAGCC TTAGTTATTTTTAGA VFMJ11_1038 1083160 - 1082798 - | lipoprotein, putative VFMJ11_1039 1083577 - 1083188 - | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component TERM 1286 1083494 - 1083504 + g 79 -3.2 -5.37345 | GATATTATCTGAAGA CATC GCT GGTG TTTTTTCTGATTGCG TERM 1287 1086191 - 1086169 - g 70 -9.3 -3.18582 | CAGTTTATTCACCAA TGATCAAAG TGAAT CTTTGATCA AAGCGATTATTGCTA VFMJ11_1040 1083875 - 1086358 + | sensory box/ggdef family protein TERM 1288 1086418 - 1086386 - T 95 -8.5 -5.30189 | opp_overlap 1086390, overlap 1086390 TAGAATATTAAAAAA GAAAGAGCAGTGATA ATA CATCGCTGCTCTTTT TTATTAAGTGTAATT TERM 1289 1086390 - 1086414 + T 100 -10.8 -5.49234 | opp_overlap 1086386 1086390 ATATTAAAAAAGAAA GAGCAGTGAT AATAC ATCGCTGCTC TTTTTTATTAAGTGT TERM 1290 1086414 - 1086390 - T 100 -9.3 -5.10526 | opp_overlap 1086390, overlap 1086386 ATATTAAAAAAGAAA GAGCAGTGATA ATA CATCGCTGCTC TTTTTTATTAAGTGT VFMJ11_1041 1089607 - 1086443 - | chitodextrinase TERM 1291 1087008 - 1087018 + g 70 -5.4 -4.32201 | TGACCTGTGTTGTTT GTGA ACG TCAC TTTTGGATTAATTGG VFMJ11_1042 1089781 - 1089635 - | hypothetical protein TERM 1292 1089697 - 1089686 - G 88 -3 -6.0427 | opp_overlap 1089686 AGGATATAAAAAAAA TTCT GCTA AGAA TGATTTATAAATTAC VFMJ11_1043 1090136 - 1092088 + | methyl-accepting chemotaxis protein TERM 1293 1092115 - 1092142 + T 100 -7.8 -5.7946 | CATCATGAAATTAAG TGGGTGAGGAAT AATT ATTTCTTGCCCA TTTTTTTATTAAGAA VFMJ11_1044 1092242 - 1092129 - | hypothetical protein VFMJ11_1045 1093032 - 1092667 - | hypothetical protein TERM 1294 1093233 - 1093221 - R 76 -6.3 -4.48299 | opp_overlap 1093220 GTATACGCAAATAAA CATGT AAA ACATG CATTATTATGTGTTT VFMJ11_1046 1095453 - 1093471 - | thrombospondin type 3 repeat family protein VFMJ11_1047 1096052 - 1096783 + | hydrolase TERM 1295 1096894 - 1096925 + F 88 -7.5 -5.1615 | opp_overlap 1096899, overlap 1096899 CAGTAAACTTGTTAA TAAAGTGGTTTTG CAACTC CAAGACCATTTTA TTTTTTAGCTATTAA TERM 1296 1096899 - 1096920 + F 84 -5.2 -5.43553 | opp_overlap 1096899, overlap 1096894 AACTTGTTAATAAAG TGGTTTTG CAACTC CAAGACCA TTTTATTTTTTAGCT TERM 1297 1098069 - 1098087 + G 71 -6 -4.19817 | overlap 1098070 CTACTTGATAATTAT TCTTCACA TGT TGTGAGGG TTTTCAATAAATCAA VFMJ11_1048 1097133 - 1098134 + | radical SAM domain protein TERM 1298 1098740 - 1098756 + G 80 -10.1 -3.66117 | overlap 1098738 GTTATCGTTGGTGTT GCGCTAG TCG CTGGCGC TGTTTATGTAGTTGC VFMJ11_1049 1098131 - 1099066 + | hypothetical protein TERM 1299 1099233 - 1099248 + T 74 -6.2 -4.57209 | opp_overlap 1099233 TATGATACATATCAA TACAAG TAGA CTTGTA TTTTATCCTTCATAT TERM 1300 1099625 - 1099674 + T 85 -10.3 -3.36505 | opp_overlap 1099625 1099634, overlap 1099630 GTATATTGTTTTAAA TAAGATAAAGGCTTTAGCATGAT TTTG ATCGTACTGAAGCCCTTATTTTA TTATAGATAGACTAT TERM 1301 1099674 - 1099625 - T 73 -8.1 -3.55071 | opp_overlap 1099625 1099630, overlap 1099634 GTATATTGTTTTAAA TAAGATAAAGGCTTTAGCATGAT TTTG ATCGTACTGAAGCCCTTATTTTA TTATAGATAGACTAT TERM 1302 1099630 - 1099669 + T 86 -8 -4.79352 | opp_overlap 1099625 1099634, overlap 1099625 TTGTTTTAAATAAGA TAAAGGCTTTAGCATGAT TTTG ATCGTACTGAAGCCCTTA TTTTATTATAGATAG TERM 1303 1099665 - 1099634 - T 74 -6.6 -4.40333 | opp_overlap 1099630 1099625, overlap 1099625 TTTAAATAAGATAAA GGCTTTAGCATGAT TTTG ATCGTACTGAAGCC CTTATTTTATTATAG VFMJ11_1050 1100517 - 1099753 - | hypothetical protein TERM 1304 1099882 - 1099895 + g 70 -3.1 -4.91084 | TGAAAGATAGCTTAT TGTCA AAAT TGGCA TTTTTCCATTTTGTT VFMJ11_1051 1101061 - 1101759 + | hypothetical protein VFMJ11_1052 1101936 - 1102907 + | periplasmic ATP/GTP-binding protein, putative VFMJ11_1053 1103137 - 1103003 - | transcriptional regulator, Cro/CI family TERM 1305 1103685 - 1103707 + r 100 -13.6 -4.38712 | opp_overlap 1103688 CAATCTATTCTCTAA TTAGGCAACA GCT TGTTGCCTAA TTTTCTAGGGATAAA TERM 1306 1103704 - 1103688 - R 81 -10.9 -2.71731 | opp_overlap 1103685 TCTATTCTCTAATTA GGCAACA GCT TGTTGCC TAATTTTCTAGGGAT TERM 1307 1103776 - 1103759 - R 100 -9.9 -5.35222 | opp_overlap 1103757 AAAAGGCACAAAAAA GCTCTGT AAAA ACAGAGC GATTAAGTGAATGTT csy_1 1104647 - 1104006 - | crispr-associated protein, Csy4 family csy_2 1105682 - 1104648 - | crispr-associated protein, Csy3 family VFMJ11_1056 1107764 - 1105692 - | hypothetical protein TERM 1308 1106225 - 1106236 + g 80 -2.2 -5.65177 | ATAAACGTTTTGCAG GGGA GAGT TCTC TTTTTTTATAAATAT TERM 1309 1107260 - 1107274 + g 88 -2.8 -6.00086 | overlap 1107262 CAGTTTGTTTCTTGG TCCAGT TGC ACTGTA TTTTTTTTATGATAT TERM 1310 1107262 - 1107272 + g 73 -5.4 -4.6341 | overlap 1107260 GTTTGTTTCTTGGTC CAGT TGC ACTG TATTTTTTTTATGAT VFMJ11_1057 1108967 - 1107768 - | hypothetical protein TERM 1311 1108661 - 1108649 - G 82 -7.7 -4.60487 | CACCATTTCTAAAAA CAGCA GAA TGCTG GCGTAAGAAAGTATT TERM 1312 1108987 - 1109001 + r 73 -4.2 -4.91473 | opp_overlap 1108987 AATTACGCCCTAAAA CTGAGG ATT CCTAAG TTTATTTTTAGGTTA TERM 1313 1109126 - 1109157 + r 93 -8.2 -5.52347 | opp_overlap 1109126 1109125 GTTGTTATGGGAAAG GCACTGTTATTT TGATTTTT AAATAGCAGTGC TTTTTTGATTTTATT VFMJ11_1058 1109470 - 1109168 - | transcriptional regulator, XRE family TERM 1314 1109290 - 1109267 - G 83 -3.2 -5.65177 | gap 1, opp_overlap 1109278, overlap 1109271 AGATTCACAAAAAAA GTAACTCAGTG GAA CACCAAGTT-C TTTTGCCATACGTTG TERM 1315 1109500 - 1109514 + H 80 -7.2 -4.61824 | opp_overlap 1109500, overlap 1109511 AAAAACCTTTAATAA CTTAGA TTG TCTAAG TTTTACTTATTCTTG TERM 1316 1109534 - 1109548 + H 73 -4.3 -4.87893 | ACTTATTCTTGTATA CTTAG CAATC CTAAG TTTTTGGTTAAGGTT VFMJ11_1059 1109572 - 1110144 + | hypothetical protein TERM 1317 1110935 - 1110914 - g 72 -8.8 -3.48506 | opp_overlap 1110917 1110925 1110927, overlap 1110917 AGAAGTTAGGAAAGA TAACCCAG AAGCGG CTGGGTTA GTCGTTGCATCATCG VFMJ11_1060 1110144 - 1111532 + | type III restriction enzyme, res subunit VFMJ11_1061 1111548 - 1112105 + | hypothetical protein TERM 1318 1112673 - 1112663 - g 79 -3.2 -5.37593 | TGCTAAAGTAAAAAA CACA AGC TGCG TTTTGATTTTGGCAG VFMJ11_1062 1112484 - 1112876 + | nuclease VFMJ11_1063 1112876 - 1113829 + | peptidase C14 caspase catalytic subunit p20 VFMJ11_1064 1113941 - 1114315 + | hypothetical protein TERM 1319 1114359 - 1114333 - T 100 -10.9 -4.7254 | opp_overlap 1114333 ATTGCCTATTAAAAA GCCGAACCCAT TCGCT ATGGTTTCGGC TTGTTTCTCCTTGAC TERM 1320 1114333 - 1114359 + T 100 -10.9 -4.1523 | opp_overlap 1114333 ATTGCCTATTAAAAA GCCGAACCCAT TCGCT ATGGTTTCGGC TTGTTTCTCCTTGAC VFMJ11_1065 1114536 - 1114423 - | hypothetical protein VFMJ11_1066 1114868 - 1116814 + | RecF/RecN/SMC N domain protein VFMJ11_1067 1116814 - 1118571 + | UvrD/REP helicase, putative VFMJ11_1068 1119741 - 1118731 - | hypothetical protein TERM 1321 1118867 - 1118881 + g 76 -3.6 -5.1963 | overlap 1118869 GGAATATCCTCTACA TTCATT TCA AATGGA TTTTTCTTCGTTGGG TERM 1322 1119314 - 1119341 + g 90 -5 -5.61824 | overlap 1119306 1119316 AATTCGATGAGTTCT TGGAATTCATTA ATAA TAATGAGTTCTG TTTTTTTACGTTTTA TERM 1323 1119316 - 1119339 + g 78 -7.6 -4.41528 | overlap 1119306 1119314 TTCGATGAGTTCTTG GAATTCATTA ATAA TAATGAGTTC TGTTTTTTTACGTTT VFMJ11_1069 1121591 - 1119741 - | integrase, catalytic region VFMJ11_1070 1122214 - 1121594 - | TnsA endonuclease N-terminal domain family protein TERM 1324 1122543 - 1122517 - H 77 -5.2 -4.98128 | opp_overlap 1122516 ATAAGCAAAAACAAA CTAAGTGATTAA TAA TTAAACGCTTAG AGTATGTTTGGGAAT VFMJ11_1071 1122670 - 1123419 + | hypothetical protein TERM 1325 1123667 - 1123653 - g 75 -10 -3.16191 | opp_overlap 1123653 TTACATTTTTATTAA TCGGAG CTA CTCCGA TTTTTTATTTTTGGA TERM 1326 1123653 - 1123667 + G 100 -10 -5.93252 | opp_overlap 1123653 TTACATTTTTATTAA TCGGAG CTA CTCCGA TTTTTTATTTTTGGA VFMJ11_1072 1123607 - 1125502 + | sensory box/ggdef family protein VFMJ11_1073 1126462 - 1125503 - | serine/threonine protein kinase VFMJ11_1074 1127130 - 1126459 - | protein phosphatase 2C TERM 1327 1126805 - 1126784 - G 70 -8.7 -3.39884 | AAATAGCATCGAGAA TCGCCTGCC CATA GACAAGCGA TATGACCATTATGAG TERM 1328 1127047 - 1127086 + g 75 -9.5 -3.31443 | opp_overlap 1127054, overlap 1127042 CCAGATACCTTGCTC GGTAAAAGATAAAATCG CATCTT CGTTTTTATCTCTTACC TTGCCTTCTTCTGAA icmF_1 1130648 - 1127127 - | type VI secretion protein IcmF TERM 1329 1127491 - 1127468 - G 70 -9 -3.11024 | gap 1, overlap 1127467 TTCCGTAATAGAAAG TGGATTGCAAG GCA CTTGCA-TCCA GTTCAAATGGCGCAA TERM 1330 1129824 - 1129812 - G 72 -3.3 -5.1764 | TAGAGAAGAGAAAAA GGGTT CGA ATCCC TCCACTTTATCCATT VFMJ11_1076 1131492 - 1130659 - | hypothetical membrane associated protein VFMJ11_1077 1132816 - 1131494 - | type VI secretion protein, family VFMJ11_1078 1133319 - 1132828 - | type VI secretion lipoprotein, family VFMJ11_1079 1134666 - 1133356 - | type VI secretion system FHA domain protein VFMJ11_1080 1134798 - 1134670 - | lipoprotein, putative VFMJ11_1081 1136369 - 1134801 - | transcriptional regulator clpV_1 1138957 - 1136375 - | type VI secretion ATPase, ClpV1 family VFMJ11_1083 1139994 - 1138954 - | type VI secretion protein, family TERM 1331 1139833 - 1139849 + gr 74 -5.1 -4.68593 | GGCCTGATCAAGATC CCACTCA TCA TGATTGG TTTTTAAGTGATGAC vasA_1 1141709 - 1139958 - | type VI secretion protein, family TERM 1332 1140912 - 1140955 + gr 76 -9.8 -2.89564 | gap 1, opp_overlap 1140921, overlap 1140907 1140905 1140921 GACATATTTACACCC TTGACTAAACTGAGCTGGCCA AAC TGGTAA-CTCAGTTAAGTCAA TGTAGTAATATTTTT VFMJ11_1085 1142131 - 1141706 - | type VI secretion system lysozyme-related protein VFMJ11_1086 1143696 - 1142221 - | type VI secretion protein, EvpB/family TERM 1333 1142789 - 1142758 - G 88 -11.6 -3.59262 | opp_overlap 1142760 TCCCATACTTTCAAA GTGGTGGAGTGGTA GATC TTCCACTGCACCAC CTGATTGAGGACCAA VFMJ11_1087 1144200 - 1143700 - | type VI secretion protein, family VFMJ11_1088 1145766 - 1144216 - | type VI secretion-associated protein, family VFMJ11_1089 1146195 - 1145989 - | hypothetical protein VFMJ11_1090 1146739 - 1146188 - | primosomal replication protein N' TERM 1334 1146249 - 1146259 + g 72 -3.2 -5.1244 | overlap 1146242 ATTGCTTCTTTACAG CGTT GTA AGCG TTTTTCTGTTGCTAG TERM 1335 1146265 - 1146277 + g 78 -4.1 -5.20333 | GTTGTAAGCGTTTTT CTGTT GCT AGCAG TTTTTGTTGTAGATC VFMJ11_1091 1147520 - 1146750 - | hypothetical membrane spanning protein VFMJ11_1092 1149673 - 1147589 - | helicase c2 TERM 1336 1149417 - 1149433 + g 85 -2.9 -5.72254 | overlap 1149419 TGAAGTGCAACAGTT GCGGTTG AGA TAACCAC TTTTTTGTTATTTAA TERM 1337 1149918 - 1149937 + H 78 -2.2 -5.65496 | TAAATTCTTTTGTGC CTAGAAAT AAAT ATTTATAG TTTTTGTTTTTCATG VFMJ11_1093 1150197 - 1151207 + | hypothetical protein TERM 1338 1151258 - 1151239 - f 89 -12.2 -3.30554 | opp_overlap 1151239 CGAAGTAATTATTAA GCCAGTCA TATT TGACTGGC TTTTTTTGTTTTTAT TERM 1339 1151239 - 1151258 + F 100 -12.2 -6.23317 | opp_overlap 1151239 CGAAGTAATTATTAA GCCAGTCA TATT TGACTGGC TTTTTTTGTTTTTAT VFMJ11_1094 1151846 - 1152835 + | hypothetical protein TERM 1340 1152884 - 1152867 - f 87 -11.3 -3.28405 | opp_overlap 1152867 1152883 AGAACAGATTATTAA GCCAGTC ATTT GACTGGC TTTTTTTTGCCTGTA TERM 1341 1152867 - 1152884 + F 100 -11.3 -5.83822 | opp_overlap 1152867, overlap 1152883 AGAACAGATTATTAA GCCAGTC ATTT GACTGGC TTTTTTTTGCCTGTA TERM 1342 1153146 - 1153171 + F 100 -11.2 -5.48054 | opp_overlap 1153141 1153142 GAATAAAAATTCTAA CCCTCGGAAG GTCAAA CTTCTGAGGG TTTTTTCGTTTTAGT TERM 1343 1154153 - 1154143 - g 73 -6.8 -4.28656 | ATGGAACAGTTAAAA GCAC TAG GTGC GAGTTCTATTCTAGT VFMJ11_1095 1153300 - 1154196 + | ATP phosphoribosyltransferase hisD 1154202 - 1155521 + | histidinol dehydrogenase hisC 1155531 - 1156571 + | histidinol-phosphate aminotransferase TERM 1344 1156740 - 1156766 + F 87 -10.3 -3.85698 | gap 1 ATTGGTATATGTTAT CCCCAAG-CTTA GGAA TAAGGCTTGGGG TTTATCAAGAACAAA VFMJ11_1098 1156809 - 1157882 + | histidine biosynthesis bifunctional protein HisB hisH 1157891 - 1158505 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit hisA 1158620 - 1159357 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisF 1159339 - 1160112 + | imidazoleglycerol phosphate synthase, cyclase subunit VFMJ11_1102 1160109 - 1160729 + | histidine biosynthesis bifunctional protein hisIE TERM 1345 1160779 - 1160754 - f 100 -11.9 -4.33274 | opp_overlap 1160757, overlap 1160757 TTGACAGTAGCAAAA TAACGCCGATC ATTT GATCGGCGTTT TTATTGGAATTGAAA TERM 1346 1160757 - 1160776 + F 100 -13.6 -5.10208 | opp_overlap 1160754 1160757 ACAGTAGCAAAATAA CGCCGATC ATTT GATCGGCG TTTTTATTGGAATTG TERM 1347 1160776 - 1160757 - f 100 -13.6 -4.28045 | opp_overlap 1160757, overlap 1160754 ACAGTAGCAAAATAA CGCCGATC ATTT GATCGGCG TTTTTATTGGAATTG VFMJ11_1103 1160837 - 1161520 + | pseudouridine synthase Rlu family protein VFMJ11_1104 1161520 - 1162470 + | methyltransferase TERM 1348 1162521 - 1162493 - T 100 -11.1 -4.9725 | opp_overlap 1162493, overlap 1162495 AGTTTGATATAAAAA GTCCTTCTCATCA TGT TGATGAAAAGGGC TTTTTTTGTTTGGTG TERM 1349 1162493 - 1162521 + T 100 -11.1 -5.99154 | opp_overlap 1162493 1162495 AGTTTGATATAAAAA GTCCTTCTCATCA TGT TGATGAAAAGGGC TTTTTTTGTTTGGTG TERM 1350 1162519 - 1162495 - T 86 -12.3 -2.74094 | opp_overlap 1162493, overlap 1162493 TTTGATATAAAAAGT CCTTCTCATCA TGT TGATGAAAAGG GCTTTTTTTGTTTGG VFMJ11_1105 1162943 - 1162545 - | lipoprotein, putative VFMJ11_1106 1163271 - 1162969 - | protein YciI TERM 1351 1163343 - 1163323 - R 84 -3.9 -5.67063 | TTCATCATAAAAAAA GCCCCAGTC ATA AACCAGAGC TTTTTGAAAAATAAT VFMJ11_1107 1163786 - 1163376 - | acyl-CoA thioester hydrolase YciA TERM 1352 1163860 - 1163842 - R 100 -10.3 -5.39721 | opp_overlap 1163835 1163842 TTACCACATAAAAAA GCCGTGT TGTAT ACACGGC TTAATCATTATCTTT TERM 1353 1163842 - 1163860 + r 83 -10.3 -3.33605 | opp_overlap 1163842, overlap 1163835 TTACCACATAAAAAA GCCGTGT TGTAT ACACGGC TTAATCATTATCTTT ispZ 1164425 - 1163880 - | intracellular septation protein A TERM 1354 1164556 - 1164535 - R 95 -8.8 -5.55664 | opp_overlap 1164535 CGATGATCAAAAAAA GGCCAATT TGAAAT AATTGGCC TTACTCATTTAAATT TERM 1355 1164535 - 1164556 + r 75 -8.8 -3.33885 | opp_overlap 1164535 CGATGATCAAAAAAA GGCCAATT TGAAAT AATTGGCC TTACTCATTTAAATT VFMJ11_1109 1165780 - 1164593 - | proton glutamate symport protein TERM 1356 1165057 - 1165069 + g 85 -5.5 -5.26875 | ATGCAGTTGAAAGCG CCACG GCT TGTGG TTTTTTCATTGCAAC TERM 1357 1166106 - 1166089 - R 93 -7 -5.75945 | opp_overlap 1166089 ATCGTGGAAAAAAAA GAGGCT TAATTT AGCCTC TTTGATCATTATTAA TERM 1358 1166089 - 1166106 + r 70 -7 -3.89131 | opp_overlap 1166089 ATCGTGGAAAAAAAA GAGGCT TAATTT AGCCTC TTTGATCATTATTAA trpA 1166937 - 1166131 - | tryptophan synthase, alpha subunit trpB 1168127 - 1166937 - | tryptophan synthase, beta subunit TERM 1359 1167707 - 1167719 + g 70 -7.7 -3.66378 | ATACGTTTGGGCTTT GACGT TCT ACGTC TTTAGCTCCCATATA TERM 1360 1167884 - 1167902 + g 76 -8.9 -3.65714 | TTTTGTGTGCACCAC CGTGAAG TAGAT CTTCACG TTTAAGGTATAGTTT VFMJ11_1112 1169550 - 1168138 - | tryptophan biosynthesis protein trpCF trpD 1170562 - 1169555 - | anthranilate phosphoribosyltransferase VFMJ11_1114 1171175 - 1170573 - | anthranilate synthase component II trpE 1172764 - 1171175 - | anthranilate synthase component I TERM 1361 1172980 - 1172965 - H 93 -7.5 -5.71712 | TCGGACATAAAAAAA CCCGC TTAGTT GCGGG TAGTGGATTTATGTC TERM 1362 1173032 - 1173016 - H 80 -7.3 -4.52703 | TAAATTAGCACAAAA CACTACC CAA AGTAGTG CCACCATCGTGAGCT TERM 1363 1173485 - 1173473 - g 71 -4.1 -4.88407 | TGAGCTAATTAAAAA TCAAG AAG CTCGA AGAGATGCTCGTGCA VFMJ11_1116 1173189 - 1174028 + | PHP domain containing protein VFMJ11_1117 1174102 - 1174722 + | Sua5/YciO/YrdC/YwlC family protein TERM 1364 1174740 - 1174762 + T 100 -7.8 -5.96894 | opp_overlap 1174739 1174742 AATGAATTATCGAAG TAGCCAGA CAGTCGT TCTGGCTA TTTTTTTATTTCAAT VFMJ11_1118 1176198 - 1174777 - | autoinducer 1 sensor kinase/phosphatase LuxN TERM 1365 1174910 - 1174928 + g 89 -5.4 -5.47821 | opp_overlap 1174910 GCGATAATCGGTAAA TTAGGATA GAT TATCTTAA TTTTTTTAGCTGCAT TERM 1366 1176132 - 1176151 + g 70 -7.9 -3.71378 | CAAGTTCATCTTTCA CCAAAGC AGAGTG GCTTTGG TTTAAATGTGGAATA TERM 1367 1176999 - 1176977 - R 70 -4.3 -4.74084 | gap 1 AAAGCAAAAGCAAAA GCTAAGTATG AGGT CATA-TTAGC AAATAGCGCCATAAA VFMJ11_1119 1178438 - 1177251 - | autoinducer synthase TERM 1368 1179298 - 1179326 + G 71 -6.7 -3.99374 | opp_overlap 1179292, overlap 1179302 1179306 TGTAATGTACGCCGG CGGTGAAGGTATG AAC CATACTTTCTACG TTGTTATTAATGAAG TERM 1369 1179768 - 1179758 - g 89 -6.8 -5.22039 | TCTAAAGGTAAAAAA CCAG CAG CTGG TCAAAAGCCAGTAAG VFMJ11_1120 1178774 - 1179838 + | ribosomal large subunit pseudouridine synthase B TERM 1370 1179903 - 1179869 - T 90 -10.9 -3.78034 | gap 1, opp_overlap 1179874, overlap 1179874 CACTTAGATGAATAA TAAAAGGGTTGC-ACC GTAA GGTAGCAACCCTTTTT GTTCGTTTCTTTAAA TERM 1371 1179898 - 1179874 - T 100 -10.8 -4.93661 | gap 1, opp_overlap 1179874, overlap 1179869 AGATGAATAATAAAA GGGTTGC-ACC GTAA GGTAGCAACCC TTTTTGTTCGTTTCT TERM 1372 1179874 - 1179898 + T 100 -10.8 -5.25906 | gap 1, opp_overlap 1179874 1179869 AGATGAATAATAAAA GGGTTGC-ACC GTAA GGTAGCAACCC TTTTTGTTCGTTTCT VFMJ11_1121 1180662 - 1179922 - | KR domain superfamily protein TERM 1373 1181198 - 1181186 - g 73 -7.7 -3.94188 | ATCGATGCGAAAGAA GTAGC AGC GCTAC GTGAGGAAGTATCAG TERM 1374 1181593 - 1181576 - g 81 -7.1 -4.652 | AAAGCACGTGAAAAA TTCCAAT TAGA ATTGGAA GAAACTCATGTTTTA VFMJ11_1122 1180826 - 1181887 + | putative protease SohB TERM 1375 1181954 - 1181983 + T 89 -10.9 -3.56558 | opp_overlap 1181954 1181961, overlap 1181961 ACAGGGTAGATATGA CAAAAAAGGCTGA GATT TCAGCCTTTTTTA TTGTCTACATTGTAC TERM 1376 1181983 - 1181954 - T 87 -13.1 -2.69977 | opp_overlap 1181954 1181961, overlap 1181961 ACAGGGTAGATATGA CAAAAAAGGCTGA GATT TCAGCCTTTTTTA TTGTCTACATTGTAC TERM 1377 1181976 - 1181961 - T 95 -9 -5.35459 | opp_overlap 1181961 1181954, overlap 1181954 AGATATGACAAAAAA GGCTGA GATT TCAGCC TTTTTTATTGTCTAC TERM 1378 1181961 - 1181976 + T 95 -9 -5.60689 | opp_overlap 1181954 1181961, overlap 1181954 AGATATGACAAAAAA GGCTGA GATT TCAGCC TTTTTTATTGTCTAC VFMJ11_1123 1182259 - 1182014 - | protein YciN TERM 1379 1182933 - 1182920 - g 81 -6.7 -4.79174 | ACCTAATTAATAAAA TGGGT ATTG ACCCA TACAATGATTGGGCA TERM 1380 1184955 - 1184937 - g 83 -9.6 -3.96449 | TAAGATCTTAAAGAA TGGTGAAG TTG CTCCACCA AAAGAAGATCCTGTA TERM 1381 1185082 - 1185068 - g 72 -10 -2.72144 | overlap 1185067 1185070 GTACTTTCCCTAAAT CACGTG AAA CACGTG CACCATTAGTGGAAG topA 1182694 - 1185324 + | DNA topoisomerase I TERM 1382 1185368 - 1185349 - f 100 -13.6 -4.15249 | opp_overlap 1185349, overlap 1185337 AAATATCAAATGAAA GAGCCGCA GAAA TGCGGCTC TTTTTTTACGTAACA TERM 1383 1185349 - 1185368 + F 100 -13.6 -5.47218 | opp_overlap 1185337 1185349 AAATATCAAATGAAA GAGCCGCA GAAA TGCGGCTC TTTTTTTACGTAACA VFMJ11_1125 1185514 - 1186932 + | transporter, divalent anion:sodium symporter family TERM 1384 1187112 - 1187100 - g 70 -3.3 -4.92757 | TTATCAAGAAGAAAA TAGCG AAG CGCAA GTCAAAGTATTCAGT VFMJ11_1126 1186936 - 1188276 + | sensory transduction protein kinase VFMJ11_1127 1188263 - 1188736 + | chemotaxis protein CheY TERM 1385 1188782 - 1188745 - T 79 -9.4 -3.3941 | gap 1, opp_overlap 1188753, overlap 1188746 ACGATAGGTAAGTAA GTTAAGCATCTCACTAC AGTGA GTAG-GAGATGCTTAAG CCAGTTAATTGGTAA TERM 1386 1188781 - 1188746 - T 87 -12.9 -2.63164 | gap 1, opp_overlap 1188753, overlap 1188745 CGATAGGTAAGTAAG TTAAGCATCTCACTAC AGTGA GTAG-GAGATGCTTAA GCCAGTTAATTGGTA VFMJ11_1128 1189782 - 1188787 - | D-lactate dehydrogenase TERM 1387 1190889 - 1190911 + G 77 -10.6 -2.82156 | opp_overlap 1190892, overlap 1190886 1190884 ATGGACATGGTGGAA GCATTAGCCG CTT CTGCTAATGC TGATATTGCTTGTGC VFMJ11_1129 1190031 - 1191740 + | phosphoglucomutase TERM 1388 1191759 - 1191780 + T 100 -10.8 -5.63504 | opp_overlap 1191759 GAGATGAAATAAAAA CGGCGGGG ATAGAA CCTCGCCG TTTTTTTATGCGGTT TERM 1389 1191780 - 1191759 - T 95 -8.6 -5.35815 | opp_overlap 1191759 GAGATGAAATAAAAA CGGCGGGG ATAGAA CCTCGCCG TTTTTTTATGCGGTT VFMJ11_1130 1192421 - 1191786 - | lysine exporter protein VFMJ11_1131 1193205 - 1192591 - | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase VFMJ11_1132 1193486 - 1195153 + | basic endochitinase TERM 1390 1195198 - 1195173 - f 100 -10.5 -4.50993 | opp_overlap 1195173 TTAAATAAAGATAAA CACCTTCCAGA TGGT TTTGGAAGGTG TTTTTTATTTTTGCA TERM 1391 1195173 - 1195198 + F 100 -12.7 -5.93252 | opp_overlap 1195173 TTAAATAAAGATAAA CACCTTCCAGA TGGT TTTGGAAGGTG TTTTTTATTTTTGCA pepT_1 1195319 - 1196548 + | peptidase T TERM 1392 1197668 - 1197681 + G 77 -8.1 -4.26953 | TGGGGTCGGGGAATG CGCCA TTCT TGGCG TTTGTTGAATTAATT VFMJ11_1134 1196551 - 1197918 + | anaerobic C4-dicarboxylate transporter TERM 1393 1197991 - 1197953 - T 82 -5.5 -5.22006 | gap 1, opp_overlap 1197953 CTATCATAATAAAAA GCCACAC-TACCTA AAATTCCCAAAA TAGGTATGTGTGGC TTTATTAGTTTATTA purA_1 1199265 - 1198009 - | adenylosuccinate synthetase TERM 1394 1199199 - 1199177 - G 75 -9.8 -3.41359 | overlap 1199175 CCTTGAAAACGAATA CTTGCAGCCG CTT CAGCAGCAAG AAAATCAACGATGCG TERM 1395 1200175 - 1200163 - g 70 -2.7 -5.09259 | GATCTTAAAACAAAA GTAAC GCC ATTAC CTGAATTCCCGACAA VFMJ11_1136 1199401 - 1200291 + | transcriptional regulator TERM 1396 1200690 - 1200675 - g 71 -7.6 -3.94877 | ATGCCTGAACAAGAA CATGAC CCAC GTCATG CCTACCAAGTCATTC VFMJ11_1137 1200567 - 1201961 + | glutamate decarboxylase TERM 1397 1201997 - 1202022 + F 72 -8.4 -3.44284 | overlap 1201995 1201995 1202013 ACATTTTGCTTTTTA GATCCTCTAT TGTTCT GTAGAGGATC TCTTCTTCCTAAAAA TERM 1398 1202227 - 1202243 + G 77 -5.2 -4.87892 | TCTTTTCTTATATTG CACAAA ATCCG TTTGTG TTTCTTTTCTTAAGC VFMJ11_1138 1202052 - 1203929 + | TrkA domain integral membrane protein VFMJ11_1139 1204842 - 1203940 - | transcriptional regulator, LysR family TERM 1399 1205016 - 1205036 + G 76 -4.6 -5.05601 | opp_overlap 1205014 1205013, overlap 1205020 AAATTACAACAACTG GCAGCGCC AACAG GGCGTTTC TTTTTATCTCTAATA TERM 1400 1205020 - 1205032 + G 83 -6.2 -5.02777 | opp_overlap 1205014 1205013, overlap 1205016 TACAACAACTGGCAG CGCC AACAG GGCG TTTCTTTTTATCTCT VFMJ11_1140 1204995 - 1205387 + | transporter VFMJ11_1141 1205397 - 1206263 + | pirin family protein VFMJ11_1142 1206496 - 1206299 - | hypothetical protein TERM 1401 1206595 - 1206625 + r 73 -6.9 -4.01703 | opp_overlap 1206597, overlap 1206597 ATTTTGTTGATAAAA AAGCCTTCTAGTT TCAGT AACCAGAAGGCTG TTATTTAAATATTAT TERM 1402 1206597 - 1206623 + r 80 -9.5 -3.58859 | opp_overlap 1206597, overlap 1206595 TTTGTTGATAAAAAA GCCTTCTAGTT TCAGT AACCAGAAGGC TGTTATTTAAATATT TERM 1403 1206623 - 1206597 - R 100 -11.7 -5.24129 | opp_overlap 1206597 1206595 TTTGTTGATAAAAAA GCCTTCTAGTT TCAGT AACCAGAAGGC TGTTATTTAAATATT VFMJ11_1143 1208122 - 1206644 - | CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase VFMJ11_1144 1209746 - 1208148 - | CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase TERM 1404 1209169 - 1209183 + g 78 -4.2 -5.27938 | TTATCTGCTAGCTGT GCGTAA TCT TCACGC TTTTTATTTGGCGGT VFMJ11_1145 1209911 - 1210837 + | transcriptional regulator, LysR family VFMJ11_1146 1211738 - 1210851 - | transcriptional regulator, LysR family VFMJ11_1147 1211872 - 1212177 + | protein YdhR TERM 1405 1212499 - 1212516 + G 89 -5.5 -5.4588 | ATCTTCGTTGGTTTT GGTTGGA GTGA TCCTACC TTTTTTATCCTTTTG VFMJ11_1148 1212196 - 1212567 + | hypothetical protein TERM 1406 1212588 - 1212562 - T 71 -3 -5.15969 | overlap 1212563 GTGCAATTTAAAAAA GCATAAACAGAG AAA CCCTACTTATGA TTGAAATCTGAAGTA VFMJ11_1149 1213599 - 1212646 - | hypothetical protein VFMJ11_1150 1214501 - 1213689 - | transcriptional regulator, AraC family VFMJ11_1151 1215115 - 1214513 - | transporter, LysE family TERM 1407 1215095 - 1215083 - G 74 -9.1 -3.46081 | overlap 1215091 GAGTGAAGTAACCAA GGCGA ACA TCGCC ATAGCAAGAAATAAA VFMJ11_1152 1215766 - 1215125 - | sulfite-dehydrogenase VFMJ11_1153 1216529 - 1215780 - | NirV TERM 1408 1216232 - 1216219 - G 81 -6.7 -4.71426 | overlap 1216222 TCTTTACCAACAAAA CAAGC AAAA GCTTG AGCTTCGTGCCAACT TERM 1409 1216252 - 1216262 + g 73 -2.4 -5.25803 | TCGTGCCAACTGATC CCTG TGA CTGG TTTTTTATCCCCATT VFMJ11_1154 1216939 - 1216535 - | hypothetical protein TERM 1410 1216677 - 1216705 + gr 85 -9 -4.20868 | overlap 1216704 TTTTTGGTTGTTTGA GCCACATTAG AAAAATCAA CTAATGTGGC TTCTTCTTTTAAAGA VFMJ11_1155 1217571 - 1216912 - | hypothetical protein TERM 1411 1218199 - 1218177 - g 81 -2.7 -5.59534 | gap 1 AATGATAATAAAAAA GCGGC-AACT CATG AGTTAGACGC TCAGGAATCTGTTTT VFMJ11_1156 1217766 - 1218503 + | beta-lactamase TERM 1412 1218560 - 1218587 + F 100 -8.5 -5.80817 | opp_overlap 1218560 TATTGAAAATATAAA GCTCTGTTTGA TAAAGC TCAAGCAGGGC TTTTTTTATATTAAA VFMJ11_1157 1218697 - 1219170 + | hypothetical protein VFMJ11_1158 1219848 - 1219264 - | transcriptional regulator, TetR family TERM 1413 1219896 - 1219913 + H 71 -8.5 -3.02549 | opp_overlap 1219895, overlap 1219881 TTGTTCAAATATTAT CTTGAAC GATC GTTCAAG TCTAGTTATATTGCT TERM 1414 1220383 - 1220395 + G 77 -7.7 -4.18018 | opp_overlap 1220382 TTATCTGAAGCACAG CGTCA CTA TGACG TTTTGGATAAACACC VFMJ11_1159 1219993 - 1220685 + | glutathione S-transferase VFMJ11_1160 1220730 - 1221590 + | glutathione S-transferase TERM 1415 1221645 - 1221611 - f 77 -10.1 -3.14468 | opp_overlap 1221611 GGTTACTATAGTTAA GCCAAGGATTTGATG TGAGG CATTCAATCCTTGGC TTTTTAGATTTAATA TERM 1416 1221611 - 1221645 + F 100 -13 -4.82855 | opp_overlap 1221611 GGTTACTATAGTTAA GCCAAGGATTTGATGT GAG GCATTCAATCCTTGGC TTTTTAGATTTAATA TERM 1417 1221915 - 1221893 - f 79 -10.5 -2.80195 | overlap 1221890 AGTGATTATTAACTA GGCTGGCGG CACTT CCGTCAGCC GGGCTGACGGAGAAT TERM 1418 1222006 - 1221983 - f 74 -5.3 -4.77165 | CGGTCCATAATAAAA GCTACTAGG GTATAG CCCAATAGC AAAAGAGGACTTGTA brnQ_2 1222024 - 1223349 + | branched-chain amino acid transport system II carrier protein TERM 1419 1223372 - 1223402 + T 85 -12 -3.14124 | opp_overlap 1223377, overlap 1223377 TCTTTTAATTAAATA AAAAACGGGTAGTT AAA AGCTACCCGTTTTG ATTTGTATTCATAAT TERM 1420 1223377 - 1223397 + T 100 -11.9 -4.67563 | opp_overlap 1223377, overlap 1223372 TAATTAAATAAAAAA CGGGTAGTT AAA AGCTACCCG TTTTGATTTGTATTC TERM 1421 1223397 - 1223377 - T 100 -9.7 -5.72053 | opp_overlap 1223377 1223372 TAATTAAATAAAAAA CGGGTAGTT AAA AGCTACCCG TTTTGATTTGTATTC VFMJ11_1162 1224042 - 1223428 - | outer membrane protein VFMJ11_1163 1224379 - 1225236 + | transcriptional regulatory protein, C VFMJ11_1164 1225227 - 1225706 + | hypothetical protein TERM 1422 1225759 - 1225716 - f 87 -6.4 -5.42514 | opp_overlap 1225717 1225719, overlap 1225717 1225719 TTATAAAGTAAAAAA CCACTAAATTAGTTATTT GTTAAATA AAATAACTAATTTAGTAT TTAGTTTGTACTTTC TERM 1423 1225758 - 1225717 - f 83 -9.9 -3.83882 | opp_overlap 1225717 1225719, overlap 1225716 1225719 TATAAAGTAAAAAAC CACTAAATTAGTTATTT GTTAAATA AAATAACTAATTTAGTA TTTAGTTTGTACTTT TERM 1424 1225717 - 1225758 + F 78 -7.7 -4.18693 | opp_overlap 1225717 1225716 1225719, overlap 1225719 TATAAAGTAAAAAAC CACTAAATTAGTTATTT GTTAAATA AAATAACTAATTTAGTA TTTAGTTTGTACTTT TERM 1425 1225756 - 1225719 - f 85 -10.3 -3.47392 | opp_overlap 1225717 1225719, overlap 1225717 1225716 TAAAGTAAAAAACCA CTAAATTAGTTATTT GTTAAATA AAATAACTAATTTAG TATTTAGTTTGTACT TERM 1426 1225719 - 1225756 + F 86 -10.3 -3.67003 | opp_overlap 1225719 1225717 1225716, overlap 1225717 TAAAGTAAAAAACCA CTAAATTAGTTATTT GTTAAATA AAATAACTAATTTAG TATTTAGTTTGTACT VFMJ11_1165 1225978 - 1227291 + | C4-dicarboxylate membrane transporter TERM 1427 1227352 - 1227332 - f 100 -11.1 -4.3953 | opp_overlap 1227332 TTTAATTAGAACAAA GGCGAGTCA TAA TGGCTCGCC TTTTTTTGTTTGGCT TERM 1428 1227332 - 1227352 + F 100 -13.3 -5.96894 | opp_overlap 1227332 TTTAATTAGAACAAA GGCGAGTCA TAA TGGCTCGCC TTTTTTTGTTTGGCT VFMJ11_1166 1227546 - 1228472 + | immunogenic protein TERM 1429 1228500 - 1228526 + F 81 -7.4 -4.35693 | overlap 1228504 ACTCAATATTAAATG GAAGGGTAAG AGTTCTG CTTACCTTTC TTCTTTTCTGACTTT TERM 1430 1228504 - 1228522 + F 70 -4.6 -4.72617 | overlap 1228500 AATATTAAATGGAAG GGTAAG AGTTCTG CTTACC TTTCTTCTTTTCTGA VFMJ11_1167 1228796 - 1229023 + | transporter TERM 1431 1229444 - 1229425 - gT 76 -7.8 -3.90744 | opp_overlap 1229411, overlap 1229410 CTGGTGGGCAAATAA TGCCACCA ATTA TGGGGGCA GGGGCATTTGTAATG TERM 1432 1229506 - 1229517 + GT 74 -4.4 -4.95487 | TCATGCTTGCATCTA TTGC TCCT GCAA TTTTGTATTTCTTTT VFMJ11_1168 1228989 - 1230470 + | transporter TERM 1433 1230515 - 1230490 - T 87 -9.9 -4.00532 | gap 1, opp_overlap 1230490 GTTTGAAATATTAAA GCCCTTAGAGAT AAG ATCT-TAAGGGC TTTTTATTAGGTGCA TERM 1434 1230490 - 1230515 + T 100 -9.9 -5.10461 | gap 1, opp_overlap 1230490 GTTTGAAATATTAAA GCCCTTAGAGAT AAG ATCT-TAAGGGC TTTTTATTAGGTGCA VFMJ11_1169 1232110 - 1230536 - | methyl-accepting chemotaxis protein TERM 1435 1231047 - 1231065 + g 77 -5.3 -4.8622 | ACTGCAGTTACTTCC CCAATGT CCATT GCATTGG TTTTTAGTTCAGCAA VFMJ11_1170 1234446 - 1232440 - | toxin corregulated pilus biosynthesis protein I TERM 1436 1232559 - 1232569 + g 73 -5.4 -4.61633 | TAACTAAATCAAAGG TACG AGT CGTA TTTTTAGCAATATCT TERM 1437 1234890 - 1234902 + G 79 -4.9 -5.10004 | GCGGTTCGTTTATTC TCAAT TCT ATTGA TTTTTAGTTCTTTTT TERM 1438 1235268 - 1235257 - g 72 -4.4 -4.73613 | opp_overlap 1235257 TTATTACTAATAAAA CCTT ATGG AAGG CTATTGGTATTTTCT VFMJ11_1171 1234836 - 1235936 + | glutamate-gated potassium channel VFMJ11_1172 1236025 - 1236726 + | SAM-dependent methyltransferase VFMJ11_1173 1236787 - 1237722 + | transcriptional regulator, LysR family TERM 1439 1238518 - 1238541 + G 77 -11 -2.7736 | overlap 1238535 TTAGCCTCGGTAGCT GGCGGAACCA TGGT TGGTTACGCC TCATTAGGTGTGGAT VFMJ11_1174 1237993 - 1239198 + | nucleoside permease NupC TERM 1440 1239224 - 1239255 + T 90 -8.1 -5.31877 | opp_overlap 1239228, overlap 1239228 TAATTTCAAATAAAG AAAAGGTTGCGAT CAAAAA GTCGCAACCTTTA TTTTTTCTAGTCCCT TERM 1441 1239251 - 1239228 - T 90 -8.2 -5.18866 | opp_overlap 1239228 1239224 TTCAAATAAAGAAAA GGTTGCGA TCAAAAAG TCGCAACC TTTATTTTTTCTAGT TERM 1442 1239228 - 1239251 + T 95 -8.9 -5.1471 | opp_overlap 1239228, overlap 1239224 TTCAAATAAAGAAAA GGTTGCGAT CAAAAA GTCGCAACC TTTATTTTTTCTAGT VFMJ11_1175 1240184 - 1239276 - | BAX protein TERM 1443 1240281 - 1240300 + r 100 -10 -5.65678 | opp_overlap 1240281 AGGGGCGATCGAAAA CGGTGCTG TAAT TAGCACCG TTTTTTGTGTTTTAT TERM 1444 1240300 - 1240281 - R 89 -9.3 -4.18197 | opp_overlap 1240281 AGGGGCGATCGAAAA CGGTGCT GTAATT AGCACCG TTTTTTGTGTTTTAT ppiB 1240829 - 1240332 - | peptidyl-prolyl cis-trans isomerase B VFMJ11_1177 1241691 - 1240840 - | beta-lactamase VFMJ11_1178 1242659 - 1241742 - | putative D-cysteine desulfhydrase family protein TERM 1445 1242681 - 1242708 + r 93 -7.1 -5.56112 | opp_overlap 1242671 1242682, overlap 1242671 1242682 AACTAGCCAAATTTA ATATGGCCTTT ATCATG AAAGGCCATAA TTTTTTAATTTTTAT TERM 1446 1242682 - 1242707 + r 93 -10.6 -3.90007 | opp_overlap 1242671 1242682, overlap 1242671 1242681 ACTAGCCAAATTTAA TATGGCCTTT ATCATG AAAGGCCATA ATTTTTTAATTTTTA TERM 1447 1242707 - 1242682 - R 83 -10.6 -3.29591 | opp_overlap 1242671 1242682 1242681, overlap 1242671 ACTAGCCAAATTTAA TATGGCCTTT ATCATG AAAGGCCATA ATTTTTTAATTTTTA VFMJ11_1179 1243064 - 1242720 - | HNH endonuclease TERM 1448 1243137 - 1243123 - H 72 -5.8 -4.29369 | TAAAAAATAACTAAA TGTATA ACC TATACA CATCTAAACATAGAA VFMJ11_1180 1243302 - 1243664 + | hypothetical protein TERM 1449 1243672 - 1243656 - f 84 -5.2 -5.42259 | CTAGCCGTAAAAAAA GAACAA TAGTT TTGTTC TGATAGCGGTGAGAA VFMJ11_1181 1243773 - 1244240 + | isoprenylcysteine carboxyl methyltransferase TERM 1450 1244909 - 1244897 - g 72 -3.4 -5.07567 | opp_overlap 1244875 1244903 1244904 GGATATCTCAAAAAA CGTT TATTC AACG TAAAGTTGAGTCTTA VFMJ11_1182 1244353 - 1245129 + | hypothetical protein TERM 1451 1245713 - 1245691 - g 74 -4.9 -4.70169 | TTATATGTAATAAAA GGCATTG TTCACTTTC CAATGCC AGATCTCAATAACCA TERM 1452 1245790 - 1245812 + G 85 -5.6 -5.33405 | GAGAATCAAGTAACG TCATGGGTAT TGC ATACACGTGA TTTTTCTTTACTACC VFMJ11_1183 1245145 - 1246374 + | transporter TERM 1453 1246417 - 1246407 - g 73 -5.4 -4.63218 | TGTGGCGCAATAAAA TGAG AAC CTCA ATCATGTTAGGCGCT TERM 1454 1246828 - 1246818 - g 80 -4.6 -5.32882 | TAGTATCACAAAAAA CCGC AGA GCGA TTAAAACTGCGTGTA VFMJ11_1184 1246364 - 1247581 + | efflux ABC transporter, permease protein VFMJ11_1185 1247591 - 1248274 + | bacitracin export ATP-binding protein BceA TERM 1455 1248368 - 1248345 - f 82 -7.5 -4.49556 | opp_overlap 1248345 TTTTTATTAAAGAAA GACGTAAGA GTTTGT TCTTACGCC TGATTCTATTCATTG VFMJ11_1186 1248397 - 1249302 + | chaperone protein DnaJ (Heat shock protein J) (HSP40) TERM 1456 1249754 - 1249742 - g 83 -6.3 -5.10208 | overlap 1249744 CAACTGGAATAAAAA TGCTT GGC AAGCA AGAGTTGGACGATTC VFMJ11_1187 1249341 - 1250525 + | hypothetical protein VFMJ11_1188 1250770 - 1250573 - | hypothetical protein TERM 1457 1251269 - 1251287 + G 76 -2.4 -5.46657 | overlap 1251271 TTTATCATCATTATG TTCGTGAT TTG ATCGTGGA TTTTTTATTGGAATA VFMJ11_1189 1250938 - 1251804 + | transcriptional regulator, LysR family TERM 1458 1251833 - 1251802 - T 100 -15.4 -2.75183 | opp_overlap 1251802 1251806, overlap 1251806 AGCGCGATGGAACGA TAAAGTCCAAGTGC GTTA ACACTTGGACTTTA TTATTGAAATGTGAA TERM 1459 1251802 - 1251833 + T 100 -14.7 -3.66844 | opp_overlap 1251802 1251806, overlap 1251806 AGCGCGATGGAACGA TAAAGTCCAAGTG CGTTAA CACTTGGACTTTA TTATTGAAATGTGAA TERM 1460 1251829 - 1251806 - T 95 -11.8 -4.06904 | opp_overlap 1251802 1251806, overlap 1251802 CGATGGAACGATAAA GTCCAAGTGC GTTA ACACTTGGAC TTTATTATTGAAATG TERM 1461 1251806 - 1251829 + T 100 -11.1 -4.45738 | opp_overlap 1251806 1251802, overlap 1251802 CGATGGAACGATAAA GTCCAAGTG CGTTAA CACTTGGAC TTTATTATTGAAATG VFMJ11_1190 1252836 - 1251853 - | nonspecific acid phosphatase VFMJ11_1191 1253801 - 1252950 - | transcriptional regulator, RpiR family protein murQ 1254062 - 1254964 + | N-acetylmuramic acid 6-phosphate etherase VFMJ11_1193 1255051 - 1256505 + | pts system N-acetylmuramic acid-specific eiibc component TERM 1462 1256566 - 1256591 + F 100 -11.2 -5.60993 | CTATAAGTACGCTAA GGCTTCACAG GTACCA CTGTGAGGCC TTTTTTTATGAAAAA VFMJ11_1194 1256677 - 1257216 + | cellulose synthase operon C protein TERM 1463 1257274 - 1257304 + F 89 -7.6 -5.24129 | opp_overlap 1257274 AAATCTGGTTCATAA TGCCTTCTGTTTAG CCT TTATTCAGAAGGCA TTTTTTATGGAGCCG VFMJ11_1195 1257326 - 1258039 + | conserved domain protein, putative VFMJ11_1196 1258158 - 1258724 + | acetyltransferase TERM 1464 1258751 - 1258788 + T 81 -9.3 -3.72765 | opp_overlap 1258761, overlap 1258761 AATTCGTTACATTGA CATAAAAAAACCGCTGG AAGT TCAGCGGTTTTTTCATA TTTAGCATTTGAGTT TERM 1465 1258778 - 1258761 - T 93 -8.4 -5.72616 | opp_overlap 1258751 1258761 ATTGACATAAAAAAA CCGCTG GAAGTT CAGCGG TTTTTTCATATTTAG TERM 1466 1258761 - 1258778 + T 100 -9.1 -5.32699 | opp_overlap 1258761, overlap 1258751 ATTGACATAAAAAAA CCGCTGG AAGT TCAGCGG TTTTTTCATATTTAG VFMJ11_1197 1260765 - 1258813 - | bcct family transporter TERM 1467 1261050 - 1261027 - H 73 -4.6 -4.96762 | opp_overlap 1261045 TAGATATCATAAAAA TAAACTACGA AAAA TCGCTGTTTA ATAAACATTCTAAAT VFMJ11_1198 1261217 - 1263253 + | prolyl endopeptidase TERM 1468 1263310 - 1263337 + T 85 -6.4 -5.31456 | opp_overlap 1263310 AAATCACAATAAAAA GCAGAATGAG GATTAAAA TTCATTCTGC TTTTTTGTCAGTTAA TERM 1469 1263337 - 1263310 - T 82 -5.7 -5.25772 | opp_overlap 1263310 AAATCACAATAAAAA GCAGAATGA GGATTAAAAT TCATTCTGC TTTTTTGTCAGTTAA VFMJ11_1199 1264855 - 1263368 - | tripeptide permease TppB TERM 1470 1263488 - 1263477 - G 74 -4.4 -4.84642 | overlap 1263472 GCTAAAGTAACAAAA CCAA TATT TTGG AATAGCTCAGTGTAA TERM 1471 1265964 - 1265952 - g 74 -4.9 -4.67048 | GTATTTTAAAAGAAA TGTAT GAG ATACA GGTACTAAAAGGAGA VFMJ11_1200 1265618 - 1268923 + | hypothetical protein TERM 1472 1269286 - 1269264 - g 73 -7.2 -4.1023 | opp_overlap 1269265, overlap 1269251 1269265 1269276 AATCTGAAAGAAGAA CTTTTAGAAA AAT TTTCTAAAAA CCTACTTGATATTAT VFMJ11_1201 1268928 - 1269374 + | response regulator receiver protein VFMJ11_1202 1269367 - 1270533 + | response regulator receiver protein TERM 1473 1270594 - 1270570 - T 89 -11.5 -3.35706 | opp_overlap 1270574, overlap 1270574 AATTATATTTTATAA TAAAGGTCGTG TAC CACGGCCTTTA TTAGCCCAAAACTGT TERM 1474 1270590 - 1270574 - T 81 -7.9 -4.32579 | opp_overlap 1270574, overlap 1270570 ATATTTTATAATAAA GGTCGTG TAC CACGGCC TTTATTAGCCCAAAA TERM 1475 1270574 - 1270590 + T 93 -10.1 -4.15044 | opp_overlap 1270574 1270570 ATATTTTATAATAAA GGTCGTG TAC CACGGCC TTTATTAGCCCAAAA VFMJ11_1203 1271582 - 1270557 - | hypothetical protein VFMJ11_1204 1272075 - 1271617 - | 23S rRNA methyltransferase TERM 1476 1271731 - 1271745 + g 78 -2.8 -5.44119 | opp_overlap 1271731 AATCGTTTCACGACA GAAATC AGT GATCTC TTTTTTTAGCGTGCC TERM 1477 1272599 - 1272610 + G 76 -7.2 -4.20918 | AATTCACTCATTGAT GCGG CAGA CCGC TTTATTCCAATTGAA VFMJ11_1205 1272170 - 1272643 + | hypothetical protein VFMJ11_1206 1272807 - 1274189 + | alpha-amylase (1,4-alpha-D-glucanglucanohydrolase) TERM 1478 1274212 - 1274253 + T 91 -12.7 -3.25758 | gap 1, opp_overlap 1274224, overlap 1274224 TTTTTTAGAGTAAAG CGTAATAAAAAAGGTGGATA ATT TATCCACCTTTTTTGTT-TG TTACATTGCTTATCT TERM 1479 1274224 - 1274242 + T 100 -11.8 -5.80003 | opp_overlap 1274224, overlap 1274212 AAGCGTAATAAAAAA GGTGGATA ATT TATCCACC TTTTTTGTTTGTTAC TERM 1480 1274242 - 1274224 - T 100 -11.8 -5.4756 | opp_overlap 1274224 1274212 AAGCGTAATAAAAAA GGTGGATA ATT TATCCACC TTTTTTGTTTGTTAC VFMJ11_1207 1276266 - 1274275 - | methyl-accepting chemotaxis protein VFMJ11_1208 1276572 - 1276922 + | histidine triad nucleotide-binding protein 2 VFMJ11_1209 1276989 - 1278386 + | tetratricopeptide repeat domain protein VFMJ11_1210 1278386 - 1278775 + | lipoprotein, putative VFMJ11_1211 1278817 - 1279407 + | lipoprotein, putative TERM 1481 1279431 - 1279466 + TF 100 -12.8 -4.69326 | gap 1, opp_overlap 1279436, overlap 1279436 TTACTTATCATCATA AAAAAGCCCTTCATCTC ATT GAG-TGAAGGGCTTTTA TTTTGTGTTGAATAT TERM 1482 1279461 - 1279436 - Tf 100 -12.7 -5.32882 | gap 1, opp_overlap 1279436 1279431 TATCATCATAAAAAA GCCCTTCATCTC ATT GAG-TGAAGGGC TTTTATTTTGTGTTG TERM 1483 1279436 - 1279461 + TF 100 -12.7 -5.26907 | gap 1, opp_overlap 1279436, overlap 1279431 TATCATCATAAAAAA GCCCTTCATCTC ATT GAG-TGAAGGGC TTTTATTTTGTGTTG VFMJ11_1213 1281244 - 1279487 - | TcpI, toxin-coregulated pilus biosynthesis gene TERM 1484 1281235 - 1281245 + gF 73 -5.4 -4.60302 | overlap 1281232 GTGCAATCTTACTGG CATG CGT CATG TTGTTTTCTTTATAT VFMJ11_1212 1281243 - 1281356 + | hypothetical protein VFMJ11_1214 1281755 - 1282093 + | hypothetical protein TERM 1485 1282149 - 1282117 - T 77 -8.7 -3.69564 | gap 1, opp_overlap 1282125, overlap 1282125 ATCAATAAATCAGAA TAAAAAAATCCGCC GATAAT GGCGGA-TTTTTTA TGAGTGCTATTTTTT TERM 1486 1282142 - 1282125 - T 100 -8.4 -5.89921 | opp_overlap 1282125, overlap 1282117 ATCAGAATAAAAAAA TCCGCC GATAAT GGCGGA TTTTTTATGAGTGCT TERM 1487 1282125 - 1282142 + T 100 -9.1 -5.28778 | opp_overlap 1282125 1282117 ATCAGAATAAAAAAA TCCGCCG ATAA TGGCGGA TTTTTTATGAGTGCT VFMJ11_1215 1282899 - 1282156 - | methyltransferase thiK 1283183 - 1284019 + | thiamine kinase VFMJ11_1217 1284146 - 1284697 + | protein VV1_2072 TERM 1488 1284757 - 1284728 - f 82 -8.7 -3.90298 | opp_overlap 1284734, overlap 1284734 CCTAATGAAACATAA TAAAAACCTCACA TTAT CGTGAGGTTTTTT GATCTAAACCAAAGA TERM 1489 1284734 - 1284751 + F 89 -7 -5.21709 | opp_overlap 1284734 1284728 GAAACATAATAAAAA CCTCAC ATTATC GTGAGG TTTTTTGATCTAAAC TERM 1490 1284751 - 1284734 - f 89 -7.7 -5.33331 | opp_overlap 1284734, overlap 1284728 GAAACATAATAAAAA CCTCACA TTAT CGTGAGG TTTTTTGATCTAAAC VFMJ11_1218 1285060 - 1286349 + | NADH dehydrogenase TERM 1491 1286403 - 1286380 - f 83 -8.2 -4.29981 | opp_overlap 1286380 TAAATAGATTTAAAA GCAGAAATAC TCCG GTGTTTCTGC TTTTTTTGTACCTAA TERM 1492 1286380 - 1286403 + F 100 -10.4 -5.64274 | opp_overlap 1286380 TAAATAGATTTAAAA GCAGAAATAC TCCG GTGTTTCTGC TTTTTTTGTACCTAA VFMJ11_1219 1286516 - 1287811 + | putative ATP-dependent RNA helicase RhlE VFMJ11_1220 1287857 - 1288267 + | hypothetical protein TERM 1493 1288315 - 1288292 - f 71 -6.7 -4.11623 | opp_overlap 1288292 TAGCACTAAACGAAA GGTTGAACG TGAAAT CGTTCAGCC TTTTTTTATGAAAAA TERM 1494 1288292 - 1288315 + F 95 -8.9 -5.60993 | opp_overlap 1288292 TAGCACTAAACGAAA GGTTGAACG TGAAAT CGTTCAGCC TTTTTTTATGAAAAA TERM 1495 1289025 - 1289048 + G 74 -4 -5.14949 | overlap 1289026 ATTGATAAGATTGTG TTTTCTTATT TTTC AATGAGAAAG TTTTATTCTTTTGTT VFMJ11_1221 1288773 - 1289783 + | glycosyl transferase, family 9 VFMJ11_1222 1290033 - 1290371 + | 40-residue yvtn family beta-propeller repeat protein TERM 1496 1290411 - 1290398 - f 79 -8.1 -4.00348 | opp_overlap 1290398 CTTTAATGAATCAAA GGTCG TTTA CGACC TTTTTTATTAGTAAT TERM 1497 1290398 - 1290411 + F 93 -8.1 -5.52023 | opp_overlap 1290398 CTTTAATGAATCAAA GGTCG TTTA CGACC TTTTTTATTAGTAAT VFMJ11_1223 1290645 - 1290782 + | hypothetical protein TERM 1498 1292852 - 1292864 + G 70 -9.1 -3.24513 | overlap 1292837 1292846 GGATTACGGTGTGAA CCCTG TTT CAGGG TTAGATTATGCGTAT VFMJ11_1224 1291284 - 1293653 + | chitodextrinase TERM 1499 1293737 - 1293762 + T 100 -13.5 -5.64421 | opp_overlap 1293737 CTAAATATACAAAAA TCCCCATTAAT AATG ATTAATGGGGA TTTTTTATTTAACCT TERM 1500 1293762 - 1293737 - T 100 -13.5 -5.14985 | opp_overlap 1293737 CTAAATATACAAAAA TCCCCATTAAT AATG ATTAATGGGGA TTTTTTATTTAACCT VFMJ11_1225 1295253 - 1293787 - | carbon starvation protein A TERM 1501 1295343 - 1295313 - R 79 -9.8 -3.21395 | overlap 1295311 1295314 ATGCTGCGTATAATA CTGTTGGGCGTAAA GAG TTCACGCCCAAAAA AGGTGAGTGGTTGTG TERM 1502 1295342 - 1295314 - R 80 -11.1 -2.52623 | overlap 1295313 1295311 TGCTGCGTATAATAC TGTTGGGCGTAAA GAG TTCACGCCCAAAA AAGGTGAGTGGTTGT VFMJ11_1226 1296056 - 1295448 - | lysine exporter protein TERM 1503 1296905 - 1296887 - g 83 -7.4 -4.68593 | opp_overlap 1296887 1296889 TGGATGACTTAAAAA GAGGCAAT TTA ATCGCCCC TTTTGGGTTTAGTTT VFMJ11_1227 1296166 - 1297041 + | transcriptional regulator VFMJ11_1228 1297760 - 1297044 - | two-component response regulator VFMJ11_1229 1299435 - 1297753 - | signal transduction histidine kinase, LytS TERM 1504 1299801 - 1299783 - g 70 -8.2 -3.72576 | opp_overlap 1299782 TTTCTTCCCATTAAA CACAGCTA TTT TAGCTATG GGTATCTTCTATGGT TERM 1505 1299887 - 1299859 - g 76 -2.3 -5.48063 | opp_overlap 1299864, overlap 1299860 1299864 ATGGAATACAAAAAA GGTAACACATTCG GTA CGACTGCGTTTAC TTCGTACGGTTTCTT VFMJ11_1230 1299682 - 1300269 + | transcriptional regulator TERM 1506 1300282 - 1300321 + T 100 -16.7 -2.88579 | opp_overlap 1300291, overlap 1300291 TAAGTTTTAAGTTTC CATGAAAAAGGCAGCTC ATAAAA GAGCTGCCTTTTTTGTG TCTGTAAGAAATTGC TERM 1507 1300291 - 1300312 + T 100 -11.6 -5.4492 | opp_overlap 1300291, overlap 1300282 AGTTTCCATGAAAAA GGCAGCTC ATAAAA GAGCTGCC TTTTTTGTGTCTGTA TERM 1508 1300312 - 1300291 - T 100 -11.6 -4.7254 | opp_overlap 1300291 1300282 AGTTTCCATGAAAAA GGCAGCTC ATAAAA GAGCTGCC TTTTTTGTGTCTGTA VFMJ11_1231 1300498 - 1300337 - | hypothetical protein TERM 1509 1301291 - 1301305 + G 74 -5 -4.76233 | opp_overlap 1301291 ATGACGTTAATGCAA GGTGTT GTG AATACC TTTGTTATTTTCTTA VFMJ11_1232 1300811 - 1301686 + | heat shock protein HtpX TERM 1510 1301730 - 1301702 - f 88 -13.3 -3.09492 | opp_overlap 1301708, overlap 1301708 TCTTTAATGTGAAGA TAAAAACCCGAGA CTT TCTCGGGTTTTTT TATATGTATAGATCA TERM 1511 1301708 - 1301724 + F 100 -12.3 -5.77988 | opp_overlap 1301708 1301702 ATGTGAAGATAAAAA CCCGAGA CTT TCTCGGG TTTTTTTATATGTAT TERM 1512 1301724 - 1301708 - f 100 -12.3 -5.09762 | opp_overlap 1301708, overlap 1301702 ATGTGAAGATAAAAA CCCGAGA CTT TCTCGGG TTTTTTTATATGTAT VFMJ11_1233 1301880 - 1302299 + | hypothetical protein TERM 1513 1302340 - 1302357 + T 100 -9.9 -5.63504 | opp_overlap 1302340 GAATGAATAAAAAAA CCACTGA CTAC TCAGTGG TTTTTTTGTAGAGTT TERM 1514 1302357 - 1302340 - T 100 -9.9 -5.87996 | opp_overlap 1302340 GAATGAATAAAAAAA CCACTGA CTAC TCAGTGG TTTTTTTGTAGAGTT VFMJ11_1234 1302883 - 1302371 - | hypothetical protein TERM 1515 1302966 - 1302944 - R 100 -10.6 -5.38054 | opp_overlap 1302944 1302943 GTTCATAAATAAAAA GGGAGAGC CGTGATT GCTCTCCC ATTATCGTTACTTAA TERM 1516 1302944 - 1302966 + r 78 -10.6 -2.73554 | opp_overlap 1302944, overlap 1302943 GTTCATAAATAAAAA GGGAGAGC CGTGATT GCTCTCCC ATTATCGTTACTTAA VFMJ11_1235 1304280 - 1302997 - | proton glutamate symport protein TERM 1517 1303965 - 1303943 - G 72 -8.4 -3.53091 | opp_overlap 1303943 ATCGTTCCTGCTAAA TTCGCGTCAG CGC CTGGCGCAAA TATCATACCTACTGT TERM 1518 1304947 - 1304933 - g 82 -8.6 -4.20932 | AATACTCAGCGAAAA CCACAT TAG ATGTGG ATGGTGATATTGTAC VFMJ11_1236 1304710 - 1306119 + | 5-methylthioadenosine/S-adenosylhomocysteine deaminase TERM 1519 1306147 - 1306167 + F 100 -11.2 -5.32699 | opp_overlap 1306147 AAACGTTTGTTTAAA GCCAGTTG TTATT CAACTGGC TTTTTTGCTATTTGC TERM 1520 1306167 - 1306147 - f 90 -11.2 -3.5394 | opp_overlap 1306147 AAACGTTTGTTTAAA GCCAGTTG TTATT CAACTGGC TTTTTTGCTATTTGC VFMJ11_1237 1306232 - 1307770 + | cell wall degradation protein VFMJ11_1238 1307945 - 1308496 + | twin-arginine translocation pathway signal TERM 1521 1308546 - 1308526 - T 100 -12.6 -5.54264 | opp_overlap 1308526 AAACAGTTAAAAAAA TGGCGACC GTATT GGTCGCCA TTTTTGTATTCATAC TERM 1522 1308526 - 1308546 + T 100 -13.3 -5.1244 | opp_overlap 1308526 AAACAGTTAAAAAAA TGGCGACCG TAT TGGTCGCCA TTTTTGTATTCATAC TERM 1523 1308604 - 1308577 - T 75 -10 -2.54896 | overlap 1308573 TTTCTACTTAATCTA TTCTTACAGAGC TAAT GCCCTATAAGAA AAGCCAATTAGAAGT asnS 1310012 - 1308612 - | asparaginyl-tRNA synthetase TERM 1524 1310619 - 1310607 - g 71 -4.8 -4.62772 | opp_overlap 1310607 TCGAAATTAAAGAAA CCTG TACAG CAGG TTGTACTTACCGTGG queD 1310279 - 1310641 + | queuosine biosynthesis protein QueD TERM 1525 1310671 - 1310689 + T 89 -6.7 -5.64274 | opp_overlap 1310671 AATGTGTTTTATGAA GGTGCTT GTTTG AAGCGCC TTTTTTTATGACTGA VFMJ11_1241 1311672 - 1310695 - | endonuclease/exonuclease/phosphatase VFMJ11_1242 1311891 - 1313135 + | exonuclease SbcD TERM 1526 1314122 - 1314102 - g 78 -2.6 -5.5112 | CTCATCAACAAAAAA CAAGTG ATAAATTGA CACTTG AGTCTCATGTTATAC TERM 1527 1314504 - 1314485 - g 73 -7.2 -4.00532 | GCGTTAAACAGCAAA GTAGTATC AGCT GATACCAC ATTAAGCGCTTTACT VFMJ11_1243 1313132 - 1316812 + | exonuclease SbcC VFMJ11_1244 1316845 - 1317330 + | acyl-CoA hydrolase TERM 1528 1317398 - 1317426 + F 86 -6.1 -5.49569 | CGATGTTCTGCTCTA GCCTCAAATTT TATGTAT AGATTTGGGGC TTTTTTCTGTTCATA TERM 1529 1318601 - 1318623 + G 79 -4.9 -5.1502 | gap 1, opp_overlap 1318582, overlap 1318586 1318582 GTTGATGATGATCAT CGGCT-TTGT GGTT ACGATAGCCG TTTCTTTTTGTTTGT VFMJ11_1245 1317600 - 1318886 + | adhesin VFMJ11_1246 1318864 - 1318995 + | multidrug efflux pump VcmH VFMJ11_1247 1319409 - 1320563 + | tyrosine-specific transport protein VFMJ11_1248 1320674 - 1321840 + | tyrosine-specific transport protein VFMJ11_1249 1321912 - 1322271 + | lipoprotein, putative VFMJ11_1250 1322302 - 1322661 + | lipoprotein, putative TERM 1530 1322675 - 1322719 + T 88 -13.2 -3.04415 | gap 1, opp_overlap 1322688, overlap 1322688 AAATGATTTATCGTT TTGA-TATTAAAAATGGCGGG AATT CCCGCCATTTTTTGTAATCAA TCTACTTTAATAATA TERM 1531 1322705 - 1322688 - T 100 -12.7 -4.8048 | opp_overlap 1322688 1322675 TTTTGATATTAAAAA TGGCGGG AATT CCCGCCA TTTTTTGTAATCAAT TERM 1532 1322688 - 1322705 + T 100 -12.7 -5.31877 | opp_overlap 1322688, overlap 1322675 TTTTGATATTAAAAA TGGCGGG AATT CCCGCCA TTTTTTGTAATCAAT VFMJ11_1251 1323264 - 1322716 - | hypothetical protein TERM 1533 1323454 - 1323437 - R 100 -11.3 -5.64274 | opp_overlap 1323437 TTATTCATAAAAAAA GGGACGA TAAA TCGTCCC TTAGTAATGGTATGT TERM 1534 1323437 - 1323454 + r 87 -11.3 -3.24456 | opp_overlap 1323437 TTATTCATAAAAAAA GGGACGA TAAA TCGTCCC TTAGTAATGGTATGT VFMJ11_1252 1324840 - 1323479 - | L-serine ammonia-lyase TERM 1535 1324875 - 1324858 - R 82 -9.8 -3.64259 | opp_overlap 1324858 AATTACCTCGAATAA GCCCCC AAAAGA GGGGGC TTTATTATCATTATT TERM 1536 1324858 - 1324875 + r 100 -9.8 -4.4204 | opp_overlap 1324858 AATTACCTCGAATAA GCCCCC AAAAGA GGGGGC TTTATTATCATTATT VFMJ11_1253 1326186 - 1324936 - | serine transporter TERM 1537 1325849 - 1325819 - G 86 -9.8 -4.04927 | TTAACCATGAAAGAA TCTACTGTGTTTGT GAT ACCAACACCGTAGA TAAGTACAATCGGAT VFMJ11_1254 1326957 - 1326376 - | CoA pyrophosphatase pabB 1328344 - 1326974 - | aminodeoxychorismate synthase, component I VFMJ11_1256 1328509 - 1330038 + | fumarate hydratase TERM 1538 1330065 - 1330095 + F 100 -15 -5.186 | opp_overlap 1330052 1330065 1330072, overlap 1330072 AAGCTTCTTAAATAA TGAAAAAGCACTCA TTT TGAGTGCTTTTTTA TTTTTGTGTCTTTTA TERM 1539 1330095 - 1330065 - f 100 -12.8 -3.91488 | opp_overlap 1330065 1330072, overlap 1330052 1330072 AAGCTTCTTAAATAA TGAAAAAGCACTCA TTT TGAGTGCTTTTTTA TTTTTGTGTCTTTTA TERM 1540 1330088 - 1330072 - f 100 -10.9 -5.04356 | opp_overlap 1330072 1330065, overlap 1330052 1330065 TTAAATAATGAAAAA GCACTCA TTT TGAGTGC TTTTTTATTTTTGTG TERM 1541 1330072 - 1330088 + F 100 -10.9 -5.98675 | opp_overlap 1330052 1330065 1330072, overlap 1330065 TTAAATAATGAAAAA GCACTCA TTT TGAGTGC TTTTTTATTTTTGTG VFMJ11_1257 1330168 - 1330524 + | lipoprotein, putative VFMJ11_1258 1330628 - 1331662 + | acriflavin resistance periplasmic protein VFMJ11_1259 1331665 - 1332747 + | acriflavin resistance periplasmic protein TERM 1542 1334285 - 1334273 - g 70 -7.7 -3.6944 | opp_overlap 1334272 1334273, overlap 1334255 TCTTGAAGAGAAAGA CCCAT ACA ATGGG ATGATTTTTGTTGTT VFMJ11_1260 1332744 - 1335821 + | transporter, AcrB/D/F family TERM 1543 1335876 - 1335850 - f 100 -12.4 -4.18763 | opp_overlap 1335850 AATAAATGTTCAAAA GCCCATATTAGA ATA TCTAGTATGGGC TTTTTTTATGATATT TERM 1544 1335850 - 1335876 + F 100 -14.6 -5.70829 | opp_overlap 1335850 AATAAATGTTCAAAA GCCCATATTAGA ATA TCTAGTATGGGC TTTTTTTATGATATT VFMJ11_1261 1335946 - 1336332 + | hypothetical protein TERM 1545 1336346 - 1336377 + T 93 -9 -4.71223 | AATCGAGTTTTGGGA TTAGGTTATTTTTA TGAG TAGAAATAGCCTAA TTTTATGTCTTATAG VFMJ11_1262 1336720 - 1336412 - | hypothetical protein VFMJ11_1263 1336889 - 1336722 - | hypothetical protein metC 1338253 - 1337066 - | cystathionine beta-lyase VFMJ11_1265 1338398 - 1338748 + | hypothetical protein TERM 1546 1338782 - 1338801 + F 100 -6.4 -6.08342 | opp_overlap 1338782 ATGAATTGAGTAAAA CCGAGC CAATGCGA GCTCGG TTTTTTTGTTTATTG TERM 1547 1338801 - 1338782 - f 78 -7.1 -4.31379 | opp_overlap 1338782 ATGAATTGAGTAAAA CCGAGCC AATGCG AGCTCGG TTTTTTTGTTTATTG TERM 1548 1339650 - 1339618 - g 83 -12.1 -3.21126 | opp_overlap 1339614 AAGCATACGTATCAA TTGCTGCAACACCAG TAA CTGATGCTGTAGCAA TTAAAGCAATGGAAC VFMJ11_1266 1339008 - 1340153 + | 1,3-propanediol dehydrogenase TERM 1549 1340188 - 1340207 + F 100 -8.6 -6.00814 | opp_overlap 1340188 TAATTAGTTTAGAAA GGTCTAAC AATA GTTAGGCC TTTTTTTTGATTCTT VFMJ11_1267 1340312 - 1340911 + | riboflavin biosynthesis protein ribAB TERM 1550 1340940 - 1340957 + F 86 -4.8 -5.66684 | opp_overlap 1340940 ATTAACTGTTAAAAA CCTCAC TTATTT GTGGGG TTTTTTTATGAGTTA TERM 1551 1341375 - 1341387 + G 77 -7.7 -4.30844 | opp_overlap 1341374 1341375 TACCTTATCAACAAT CGGAA GTT TTCCG TTTTGGTAATGCGAT VFMJ11_1268 1341122 - 1342375 + | insulin-cleaving metalloproteinase outer membrane protein TERM 1552 1342424 - 1342462 + F 76 -2.5 -5.51612 | gap 1, overlap 1342426 CCTAGAAATAGGCGT TAGCTCAATCAC-ATTTC CCCC GATCTAGTGATTGAGCTC TTTTCTTTTTTCTAT VFMJ11_1269 1342554 - 1343957 + | thiol oxidoreductase VFMJ11_1270 1343968 - 1344978 + | imelysin superfamily protein TERM 1553 1345057 - 1345080 + G 70 -9.6 -2.64704 | overlap 1345056 AGCATGTTCTTCTTC GCCGCTTC AGAGAGAG GAAGCGGC ATTGGTATCTTGTTC VFMJ11_1271 1344968 - 1346077 + | lipoprotein, putative VFMJ11_1272 1346122 - 1346775 + | metallo-beta-lactamase superfamily protein TERM 1554 1347080 - 1347067 - g 74 -3.8 -5.16572 | ACTGAAGTGAAAAAA GCAG CTAAAC CTGC AAAAGTAGCTAAACC VFMJ11_1273 1347058 - 1347363 + | hypothetical protein TERM 1555 1347390 - 1347420 + T 84 -12 -2.53382 | opp_overlap 1347397 1347398, overlap 1347398 ATTATTTTATGGACA CAAAGAAGCCGGGA TTA TCTCGGTTTTTTTG TACCTTGAAAATGAT TERM 1556 1347398 - 1347412 + T 93 -7.8 -5.66684 | opp_overlap 1347397 1347398, overlap 1347390 ATGGACACAAAGAAG CCGGGA TTA TCTCGG TTTTTTTGTACCTTG TERM 1557 1347481 - 1347506 + T 100 -10.6 -5.01535 | opp_overlap 1347481 1347485 ATCTAATTATAAAAA TAAAGGGCAT ACTAAG ATGCCCTTTA TTTTTGTCATTCTGA TERM 1558 1347506 - 1347481 - T 100 -10.6 -4.98857 | opp_overlap 1347481, overlap 1347485 ATCTAATTATAAAAA TAAAGGGCAT ACTAAG ATGCCCTTTA TTTTTGTCATTCTGA TERM 1559 1347502 - 1347485 - T 88 -7 -5.00267 | opp_overlap 1347481, overlap 1347481 AATTATAAAAATAAA GGGCAT ACTAAG ATGCCC TTTATTTTTGTCATT VFMJ11_1274 1348447 - 1347533 - | hypothetical protein TERM 1560 1348312 - 1348296 - G 82 -8.1 -4.58395 | CGCATTGGGGAAAAA TCAAATG ACG CATTTGA ACAATAGCTAGAGTA TERM 1561 1348577 - 1348528 - R 95 -8.9 -5.63645 | gap 1, opp_overlap 1348533, overlap 1348531 GCAAAACATAAAAAA CA-ATAGCGCCCGTTTATCTAAAT GTA ATTTAGGTAAATGAGCGCTATATA AGCAAAAAAATTTAA TERM 1562 1348573 - 1348531 - R 100 -14.4 -4.8277 | opp_overlap 1348533, overlap 1348528 AAACATAAAAAACAA TAGCGCCCGTTTATCTAAAT GTA ATTTAGGTAAATGAGCGCTA TATAAGCAAAAAAAT TERM 1563 1348533 - 1348571 + r 95 -14.8 -2.87132 | opp_overlap 1348531 1348528 ACATAAAAAACAATA GCGCCCGTTTATCTAAAT GTA ATTTAGGTAAATGAGCGC TATATAAGCAAAAAA VFMJ11_1275 1349768 - 1348596 - | tyrosine-specific transport protein VFMJ11_1276 1350019 - 1351251 + | CinA family protein TERM 1564 1351286 - 1351311 + T 100 -10.5 -5.47914 | opp_overlap 1351286 ATAGAACCCAAATAA GCCCAATAGGA TAAC TCTTGTTGGGC TTTTTTATGCTTTTT VFMJ11_1277 1351525 - 1351316 - | ferredoxin VFMJ11_1278 1353454 - 1351673 - | ggdef domain protein TERM 1565 1352849 - 1352863 + g 77 -5 -4.92757 | overlap 1352847 1352845 TTTCTCACGAATATT GATATC ATC GATGTC TTTTATTCTTAATAG VFMJ11_1279 1353743 - 1353609 - | hypothetical protein TERM 1566 1353927 - 1353908 - R 100 -10.7 -5.18726 | opp_overlap 1353908 TGCTGATAACAAAAA GCCGAGC ATGAAA GCTCGGC TTTGGTATACATATG TERM 1567 1353908 - 1353927 + r 90 -10.7 -3.85539 | opp_overlap 1353908 TGCTGATAACAAAAA GCCGAGC ATGAAA GCTCGGC TTTGGTATACATATG VFMJ11_1280 1355081 - 1353948 - | ribonucleoside-diphosphate reductase, beta subunit TERM 1568 1355234 - 1355215 - R 93 -10.7 -4.06096 | opp_overlap 1355212 1355209, overlap 1355207 AACTAAAGATAATAA GCCCGCT AATGAA AGCGGGC TAAATATTAATGTGA VFMJ11_1281 1357530 - 1355254 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 1569 1355401 - 1355413 + g 73 -7.7 -3.9642 | TAATAACAGCTTCAT TGGCA CTT TGCCA TTTGGTTGAATATTT TERM 1570 1355622 - 1355612 - G 79 -6.8 -4.57474 | opp_overlap 1355612 TTAACTGATACAAAA CCAC GTG GTGG TTCAATACCGTTAGT ubiG 1358729 - 1358025 - | 3-demethylubiquinone-9 3-O-methyltransferase TERM 1571 1360785 - 1360771 - g 73 -7.2 -3.97209 | GCAACTAAGATGAAA GATGAA GAC TTCATC GAGCGTCTACTTGTT gyrA 1359055 - 1361691 + | DNA gyrase, A subunit TERM 1572 1361736 - 1361715 - T 100 -14.5 -5.48213 | opp_overlap 1361715 GATGTAAAATAAAAA GCCCGCTTA GAAA TAAGCGGGC TTTTTTTATTCATTA TERM 1573 1361715 - 1361736 + T 100 -14.5 -5.87996 | opp_overlap 1361715 GATGTAAAATAAAAA GCCCGCTTA GAAA TAAGCGGGC TTTTTTTATTCATTA VFMJ11_1284 1362026 - 1361805 - | hypothetical protein TERM 1574 1362183 - 1362154 - R 100 -10.9 -4.57569 | opp_overlap 1362161, overlap 1362142 1362161 TTATCTTTTTAAAAA TAAAAAAGAGTGC AGAA GCACTCTTTTATA AGTCATTATTTATTT TERM 1575 1362176 - 1362161 - R 100 -9 -5.93252 | opp_overlap 1362161, overlap 1362142 1362154 TTTAAAAATAAAAAA GAGTGC AGAA GCACTC TTTTATAAGTCATTA TERM 1576 1362161 - 1362176 + r 89 -9 -4.44915 | opp_overlap 1362142 1362161 1362154 TTTAAAAATAAAAAA GAGTGC AGAA GCACTC TTTTATAAGTCATTA VFMJ11_1285 1362914 - 1362207 - | hypothetical protein TERM 1577 1362478 - 1362494 + g 85 -6.7 -5.13741 | opp_overlap 1362481 ACTAATGGGCGCTGA CAATTAA TCA TTAATTG TTTTTCTTCCATTAA TERM 1578 1362574 - 1362546 - G 86 -10.5 -4.09685 | GTTCATTCCTGAAAA TTGAACATATTGT TTT ACAACATGCTCAA TAAACTCAGGGTTAA VFMJ11_1287 1363181 - 1363062 - | hypothetical protein VFMJ11_1286 1363145 - 1363693 + | phosphoesterase, PAP2 family VFMJ11_1288 1363756 - 1365108 + | hypothetical protein TERM 1579 1365136 - 1365161 + F 100 -13.4 -3.65812 | TATTAATTGTTAATT TTCGAGCTGC ATTGTC GCAGCTCGAA TTGTATTAGGAAAAC VFMJ11_1289 1365180 - 1365497 + | protein VV2_0047 TERM 1580 1366367 - 1366390 + G 86 -4.6 -5.39221 | gap 1, opp_overlap 1366367 TGTCATATTAAGTTA CCAATTAG-GC CTA GCACTATTTGG TTTTTTACTTATTAT VFMJ11_1290 1365516 - 1366598 + | membrane metalloprotease VFMJ11_1291 1366661 - 1367407 + | sporulation-control protein TERM 1581 1367453 - 1367480 + T 100 -14.4 -4.82863 | opp_overlap 1367453 1367457, overlap 1367457 GATTAAATGCATTAA TAAAGCTCTCTA CATT TAGAGAGCTTTA TTTGTTTTATGCTTC TERM 1582 1367480 - 1367453 - T 95 -14.4 -3.25802 | opp_overlap 1367453 1367457, overlap 1367457 GATTAAATGCATTAA TAAAGCTCTCTA CATT TAGAGAGCTTTA TTTGTTTTATGCTTC TERM 1583 1367457 - 1367476 + T 100 -10.8 -4.91046 | opp_overlap 1367457 1367453, overlap 1367453 AAATGCATTAATAAA GCTCTCTA CATT TAGAGAGC TTTATTTGTTTTATG TERM 1584 1367476 - 1367457 - T 100 -10.8 -4.27474 | opp_overlap 1367453 1367457, overlap 1367453 AAATGCATTAATAAA GCTCTCTA CATT TAGAGAGC TTTATTTGTTTTATG VFMJ11_1292 1367777 - 1367487 - | antibiotic biosynthesis monooxygenase domain protein VFMJ11_1293 1368194 - 1367799 - | lactoylglutathione lyase TERM 1585 1368297 - 1368283 - R 72 -5.8 -4.33767 | ATAAATCTATTAAAA TTAATG TGT CATTAA AGAGTTAAGAGTGTT VFMJ11_1294 1368575 - 1368294 - | arylsulfate sulfotransferase TERM 1586 1369739 - 1369721 - g 79 -6.7 -4.5774 | TACCAAGAAGTAAAA GGCCCAT TGATG ATGGACC GCGTACTTTGGGAAC thrS 1368839 - 1370767 + | threonyl-tRNA synthetase infC 1370852 - 1371322 + | translation initiation factor IF-3 TERM 1587 1371372 - 1371345 - f 70 -8.4 -3.19081 | opp_overlap 1371346, overlap 1371341 1371346 1371348 CATTCAAGTAATACA GCAGGGTAGCTG TTCG CAGTTACCCTGT TTTATTCGCCTAATT TERM 1588 1371371 - 1371346 - f 84 -11.9 -2.50966 | opp_overlap 1371346, overlap 1371345 1371341 1371348 ATTCAAGTAATACAG CAGGGTAGCTG TTCG CAGTTACCCTG TTTTATTCGCCTAAT TERM 1589 1371346 - 1371371 + F 100 -14.1 -4.66318 | opp_overlap 1371345 1371341 1371346 1371348 ATTCAAGTAATACAG CAGGGTAGCTG TTCG CAGTTACCCTG TTTTATTCGCCTAAT rpmI 1371430 - 1371624 + | ribosomal protein L35 rplT 1371666 - 1372019 + | ribosomal protein L20 TERM 1590 1372053 - 1372070 + F 100 -11.3 -5.64274 | opp_overlap 1372053 TTTAAGACTAAGAAA GGAGAGC ACTA GCTCTCC TTTTTTTATGCCTCC TERM 1591 1372070 - 1372053 - f 100 -11.3 -4.33153 | opp_overlap 1372053 TTTAAGACTAAGAAA GGAGAGC ACTA GCTCTCC TTTTTTTATGCCTCC VFMJ11_1299 1372234 - 1373553 + | Ferric reductase like transmembrane component family protein hutD 1374412 - 1373633 - | hemin ABC transporter, ATP-binding protein HutD VFMJ11_1301 1375449 - 1374412 - | HmuU protein VFMJ11_1302 1376307 - 1375459 - | hemin-binding periplasmic protein HmuT VFMJ11_1303 1376723 - 1376304 - | TolR protein TERM 1592 1376384 - 1376396 + g 73 -7.7 -3.87627 | opp_overlap 1376383 ATAATTTCACCATAT GCTGA ATT TCAGC TGTTTTATCTGAGGC VFMJ11_1304 1377403 - 1376720 - | TolQ protein VFMJ11_1305 1378165 - 1377425 - | TonB protein TERM 1593 1377860 - 1377873 + g 87 -5.3 -5.47846 | TGGCTTTGACGTTTT TGGTT TTTT AACCA TTTTCTTTTTTGGTT VFMJ11_1306 1378322 - 1379698 + | coproporphyrinogen III oxidase TERM 1594 1380187 - 1380158 - g 90 -8.7 -4.9725 | opp_overlap 1380158 1380157 1380152 AGGTCGAGATAAAAA GCGTCAACTTATT CCTG AACAAGTTGAAGC GTTTAATGTCTTAAA VFMJ11_1307 1379727 - 1380218 + | oxygen-independent coproporphyrinogen III oxidase VFMJ11_1308 1380271 - 1380798 + | HutZ protein TERM 1595 1380836 - 1380851 + F 79 -5.4 -5.07275 | opp_overlap 1380836 GAATTTAAGACTAAA GCTCAA TATT TTGGGC TTTTTCTGTATCTGG TERM 1596 1382188 - 1382164 - g 70 -9.3 -3.10409 | opp_overlap 1382184 TATGAAGGGAGGCAA CCGCAAGTGCT AGA AGAACTTGCAG AGGGAACCTCTCATT VFMJ11_1309 1381186 - 1383243 + | VgrG protein VFMJ11_1310 1383243 - 1384097 + | hypothetical protein VFMJ11_1311 1384094 - 1387351 + | hypothetical protein TERM 1597 1387956 - 1387940 - g 91 -2.3 -6.09888 | overlap 1387947 TTGCAATAAAAAAAA TGCAAAT GAT ATTTTCA ATACCTTGAGGGATT VFMJ11_1312 1387338 - 1388069 + | hypothetical protein VFMJ11_1313 1388098 - 1388826 + | hypothetical protein VFMJ11_1314 1388813 - 1389544 + | hypothetical protein VFMJ11_1315 1389573 - 1390304 + | hypothetical protein TERM 1598 1390861 - 1390849 - g 73 -7.7 -3.8637 | opp_overlap 1390849 1390848 TGATATTAGAAAAGA GGCTA CTT TAGCC ATTATAAGCCATCCA VFMJ11_1316 1390334 - 1391035 + | hypothetical protein TERM 1599 1391066 - 1391081 + T 91 -11.8 -3.60098 | opp_overlap 1391066 ACAAACATAAAAAAA GCGGCG ATGA CGCCGC TTTGAACTAGCCAAT TERM 1600 1391081 - 1391066 - T 100 -11.8 -5.90231 | opp_overlap 1391066 ACAAACATAAAAAAA GCGGCG ATGA CGCCGC TTTGAACTAGCCAAT VFMJ11_1317 1393317 - 1391119 - | hemin receptor pheS 1393638 - 1394621 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 1601 1395372 - 1395386 + G 70 -8.6 -3.36452 | GTTGTGGTATTCGTT CAATCG ATG CGATTG TTGATATTACAAACT pheT 1394639 - 1397026 + | phenylalanyl-tRNA synthetase, beta subunit TERM 1602 1397058 - 1397085 + F 100 -11.4 -5.7946 | opp_overlap 1397058 1397056 CGAAAGAATATAAGA TCCAGTACTGAC ATTT GTTGGTACTGGA TTTTTTTATTCAAAA TERM 1603 1397566 - 1397584 + F 77 -9.6 -3.00022 | ACTGTTCAGTTTCCA GTTACAGC AAT GCTGTGAC TCTGTCTAACGTAAC ihfA 1397615 - 1397911 + | integration host factor, alpha subunit TERM 1604 1397941 - 1397967 + F 95 -8.8 -5.49234 | opp_overlap 1397941 GCGAACAAGAGAGAA GCCGTGTGAT GCAGTTA ATCACATGGC TTTTTTATTGCCTGT VFMJ11_1321 1398206 - 1399198 + | succinylglutamate desuccinylase VFMJ11_1322 1399297 - 1401081 + | oligoendopeptidase F TERM 1605 1401129 - 1401106 - T 89 -6.7 -5.72254 | opp_overlap 1401106 GTAAATAATAAAAAA GCGCCTC ACTGAAACTA GAGGCGC TTTTTTTATCTATCA TERM 1606 1401106 - 1401129 + T 89 -6.7 -5.76633 | opp_overlap 1401106 GTAAATAATAAAAAA GCGCCTC ACTGAAACTA GAGGCGC TTTTTTTATCTATCA VFMJ11_1323 1401645 - 1401163 - | hypothetical protein VFMJ11_1324 1402714 - 1401662 - | 3-deoxy-7-phosphoheptulonate synthase VFMJ11_1325 1402923 - 1403807 + | phosphoenolpyruvate synthase TERM 1607 1403836 - 1403864 + T 100 -10.4 -5.39721 | opp_overlap 1403836 AGTAGCAATAAAAAA CGCCTTTATTTC GTTAA GCAATAAAGGCG TTTTTTGTATCATAG TERM 1608 1403864 - 1403836 - T 100 -10.4 -5.52023 | opp_overlap 1403836 AGTAGCAATAAAAAA CGCCTTTATTTC GTTAA GCAATAAAGGCG TTTTTTGTATCATAG VFMJ11_1326 1405244 - 1403889 - | hypothetical protein TERM 1609 1404466 - 1404433 - G 73 -2.4 -5.27023 | opp_overlap 1404436, overlap 1404435 1404436 ACCGCAAAAATAAAA GAGGCCGTGATTTC ACCCAA GAAACCACGAGCTT GAATCACCATCAATG VFMJ11_1327 1405334 - 1406170 + | RNA binding S1 domain protein TERM 1610 1406218 - 1406189 - T 88 -7.1 -5.0538 | opp_overlap 1406191, overlap 1406191 TTTTACTCCAAAAAA TAGCCCGTAACTA TTCC TGGTCACGGGCTT TGGGAAACGGCTCAT TERM 1611 1406191 - 1406216 + T 82 -9.7 -3.53224 | opp_overlap 1406189 1406191 TTACTCCAAAAAATA GCCCGTAACTA TTCC TGGTCACGGGC TTTGGGAAACGGCTC TERM 1612 1406216 - 1406191 - T 93 -9.7 -4.15748 | opp_overlap 1406191, overlap 1406189 TTACTCCAAAAAATA GCCCGTAACTA TTCC TGGTCACGGGC TTTGGGAAACGGCTC VFMJ11_1328 1407883 - 1406333 - | ggdef domain protein TERM 1613 1408297 - 1408327 + H 86 -12.7 -2.93747 | opp_overlap 1408304, overlap 1408304 GCACCATTATTTAAA CGAAGAAGCCCAC CTAGT GTGGGCTTTTTTG TATCTGCGATTTACT TERM 1614 1408304 - 1408320 + H 100 -9.4 -5.4251 | opp_overlap 1408304, overlap 1408297 TATTTAAACGAAGAA GCCCAC CTAGT GTGGGC TTTTTTGTATCTGCG TERM 1615 1408320 - 1408304 - H 85 -9.4 -3.90425 | opp_overlap 1408297 1408304 TATTTAAACGAAGAA GCCCAC CTAGT GTGGGC TTTTTTGTATCTGCG VFMJ11_1331 1408543 - 1408935 + | LysM domain protein TERM 1616 1408984 - 1408954 - T 83 -11.3 -2.9313 | opp_overlap 1408960, overlap 1408960 TGTTAAATGAATAAT GAAAAAGCCGCTA ATCAA TAGCGGCTTTTTT TATGGTTTGTGGAAG TERM 1617 1408960 - 1408978 + T 100 -10.3 -5.75599 | opp_overlap 1408954 1408960 ATGAATAATGAAAAA GCCGCTA ATCAA TAGCGGC TTTTTTTATGGTTTG TERM 1618 1408978 - 1408960 - T 100 -10.3 -5.00339 | opp_overlap 1408960, overlap 1408954 ATGAATAATGAAAAA GCCGCTA ATCAA TAGCGGC TTTTTTTATGGTTTG VFMJ11_1332 1410178 - 1409006 - | putative aminotransferase B nhaC_1 1411642 - 1410188 - | Na+/H+ antiporter NhaC TERM 1619 1411191 - 1411171 - G 73 -7.5 -4.02424 | AGTAAGCACCAGAAA CCACCGC ACCAGCA GCGGCGG CCATTGATACATCAA VFMJ11_1334 1412801 - 1411779 - | HTH-type transcriptional regulator GalR VFMJ11_1335 1413005 - 1413997 + | 3',5'-cyclic-nucleotide phosphodiesterase TERM 1620 1414044 - 1414015 - T 100 -10.9 -4.63184 | opp_overlap 1414012 1414015 AAGTCATTGTAAAAA TGGATATGGTC AATATAAA GACCATATCCA TGCATTTGTTTCTTA TERM 1621 1414015 - 1414044 + T 81 -10.9 -2.84383 | opp_overlap 1414015, overlap 1414012 AAGTCATTGTAAAAA TGGATATGGTC AATATAAA GACCATATCCA TGCATTTGTTTCTTA VFMJ11_1336 1415986 - 1414064 - | lipoprotein, putative VFMJ11_1337 1416336 - 1416746 + | acyl-CoA thioester hydrolase YciA TERM 1622 1416810 - 1416839 + T 100 -15.9 -4.19276 | opp_overlap 1416810 TTAACATCAAAAAAA CAGCCTGCTTAAT GAAA ATTGAGCAGGCTG TTATTTATCTATAAT TERM 1623 1416839 - 1416810 - T 100 -13.7 -5.63374 | opp_overlap 1416810 TTAACATCAAAAAAA CAGCCTGCTTAAT GAAA ATTGAGCAGGCTG TTATTTATCTATAAT VFMJ11_1338 1417303 - 1416848 - | MC21 protein TERM 1624 1417321 - 1417341 + H 71 -8.5 -3.12408 | opp_overlap 1417321 1417325, overlap 1417320 1417315 1417314 TTATCTCCTGATTAA TAAACTAAA CTG TTTAGTTTA ATTTATCGTTTATTT TERM 1625 1417341 - 1417321 - H 71 -8.5 -3.14564 | opp_overlap 1417321 1417320 1417315 1417314, overlap 1417325 TTATCTCCTGATTAA TAAACTAAA CTG TTTAGTTTA ATTTATCGTTTATTT VFMJ11_1339 1417429 - 1417989 + | transcriptional regulator, TetR family TERM 1626 1418126 - 1418147 + G 77 -8 -4.25104 | ATATTGTTACCTTTG GTGAGGGC AGGGTC GCCCTTAC TTTTGGTGAGCAAAA VFMJ11_1340 1418023 - 1418403 + | lactoylglutathione lyase family protein TERM 1627 1418543 - 1418521 - f 73 -7.2 -3.98173 | opp_overlap 1418521, overlap 1418526 TGAAATTCAACTAAA TTAAACTAAA CGG TTCAGTTTAA TTTTAATAAATCAGT VFMJ11_1341 1418580 - 1419155 + | glutaredoxin VFMJ11_1342 1419157 - 1419843 + | mercuric reductase TERM 1628 1419954 - 1419933 - f 73 -7.4 -3.87638 | opp_overlap 1419933, overlap 1419936 TAAATTAATTAAGAA GAAGCATT TTCCCC AATGCTTC TTTTTTTTCATTTAC TERM 1629 1419933 - 1419954 + F 100 -7.4 -6.02546 | opp_overlap 1419933 1419936 TAAATTAATTAAGAA GAAGCATT TTCCCC AATGCTTC TTTTTTTTCATTTAC VFMJ11_1343 1419993 - 1421429 + | 5-methylthioadenosine/S-adenosylhomocysteine deaminase 1 (MTA/SAH deaminase 1) VFMJ11_1344 1421554 - 1421889 + | hypothetical protein TERM 1630 1421922 - 1421893 - T 73 -7.9 -3.7282 | opp_overlap 1421895, overlap 1421895 CGAGCTTACTAAGAA GATGGGCAAAGGT ATTT ACTTTTGCCCATT TTTGTTTACTACGAT TERM 1631 1421895 - 1421920 + T 100 -12.7 -5.33405 | opp_overlap 1421893 1421895 AGCTTACTAAGAAGA TGGGCAAAGGT ATTT ACTTTTGCCCA TTTTTGTTTACTACG TERM 1632 1421920 - 1421895 - T 85 -10.5 -3.44552 | opp_overlap 1421895, overlap 1421893 AGCTTACTAAGAAGA TGGGCAAAGGT ATTT ACTTTTGCCCA TTTTTGTTTACTACG VFMJ11_1345 1423286 - 1421943 - | Na+-driven multidrug efflux pump TERM 1633 1423325 - 1423304 - R 73 -4.4 -5.00616 | overlap 1423306 TTTGTCCTTAAAAAA GGGAAGAG AGGATG CTCTTCAC CATACAGCTAGGAAG VFMJ11_1346 1424716 - 1423460 - | protein UmuC TERM 1634 1424053 - 1424066 + g 83 -5.3 -5.28176 | opp_overlap 1424046, overlap 1424048 ATACAATACGTTCAA CTTCA ACGT TGAAG TTTTTTCTCACTAAG VFMJ11_1347 1425123 - 1424716 - | DNA polymerase V subunit TERM 1635 1425066 - 1425051 - G 72 -4.7 -4.75288 | CGAGATCAAAAGAAA GCTGA GAATAT TCAGC AGCAGGGCTTTCAAA TERM 1636 1425153 - 1425128 - R 78 -7 -4.45485 | opp_overlap 1425128 ATTACATTCATAAAA TAACACTGTA TATAAG CACAGTGTTA TTTTGGGTGTGAATG TERM 1637 1425128 - 1425153 + r 71 -6.3 -4.24204 | opp_overlap 1425128 ATTACATTCATAAAA TAACACTGT ATATAAGC ACAGTGTTA TTTTGGGTGTGAATG VFMJ11_1348 1425980 - 1425216 - | cyclohexadienyl dehydratase TERM 1638 1426541 - 1426551 + G 74 -4 -5.07486 | overlap 1426531 CATGGCAACGGTTTT TCAA GCG TTGA TTTTTCTTACCGCTG TERM 1639 1426779 - 1426799 + G 70 -3.3 -4.91852 | ACTGGCGAAAAATTG GTTATCGGT ATT ATTGGTAAC TTTATTTTTGGTGCA VFMJ11_1349 1426329 - 1427150 + | conserved integral membrane protein VFMJ11_1350 1427236 - 1427802 + | hypothetical protein TERM 1640 1427879 - 1427844 - T 100 -10.6 -4.55887 | opp_overlap 1427849, overlap 1427849 TGTTAAAAACATAAA GAAAAGGCCAGCTATT CGTT AATAGTTGGCCTTTTT TATGTCTTCTATTTT TERM 1641 1427874 - 1427849 - T 100 -10.5 -5.15682 | opp_overlap 1427849, overlap 1427844 AAAACATAAAGAAAA GGCCAGCTATT CGTT AATAGTTGGCC TTTTTTATGTCTTCT TERM 1642 1427849 - 1427874 + T 100 -12.7 -5.48787 | opp_overlap 1427849 1427844 AAAACATAAAGAAAA GGCCAGCTATT CGTT AATAGTTGGCC TTTTTTATGTCTTCT VFMJ11_1351 1428952 - 1427900 - | hypothetical protein VFMJ11_1352 1430585 - 1429164 - | ribosomal RNA small subunit methyltransferase F TERM 1643 1430698 - 1430722 + r 93 -10.1 -4.09321 | opp_overlap 1430698 GATGAATAAGAAAAA GGCAGTTGA ATGAACA TCAACTGCC TTATTTAGTTAACTC TERM 1644 1430722 - 1430698 - R 100 -10.1 -5.31855 | opp_overlap 1430698 GATGAATAAGAAAAA GGCAGTTGA ATGAACA TCAACTGCC TTATTTAGTTAACTC VFMJ11_1353 1433383 - 1430747 - | mce related protein TERM 1645 1432406 - 1432417 + g 73 -2.2 -5.31275 | TTCAACAGTGGCAGA GGCA ATAA TGTC TTTTTTATCATCAGA TERM 1646 1432539 - 1432551 + g 76 -6.9 -4.43012 | ATTCTAATCGGAATG CCGCG TCC TGCGG TTTTGATATTAGAGT VFMJ11_1354 1434587 - 1433361 - | paraquat-inducible protein A TERM 1647 1434312 - 1434300 - G 70 -7.7 -3.75844 | overlap 1434296 AAATAAAATAAGTAA CCCAA GCA TTGGG AAACCTTCAGCCATT VFMJ11_1355 1436398 - 1434605 - | transporter TERM 1648 1435929 - 1435917 - G 71 -4.8 -4.55673 | AAAGAGACGATAAAA CGAC TTAAT GTCG GACCAAGGAACTTAT VFMJ11_1356 1436495 - 1436947 + | GAF domain protein TERM 1649 1437452 - 1437441 - g 75 -5.8 -4.77719 | CAAAAGCTAAGAAAA CAGC TCGT GCTG CTACTCCACCTAAGC VFMJ11_1357 1437053 - 1437679 + | ProP effector prc 1437697 - 1439718 + | C- processing peptidase TERM 1650 1439762 - 1439742 - f 81 -8.3 -4.17023 | opp_overlap 1439742 TGAATTATTTTAAAA CAGAAGTCA TGA TGGCTTCTG TTTTTTTATGTCTAA TERM 1651 1439742 - 1439762 + F 100 -10.5 -5.76633 | opp_overlap 1439742 TGAATTATTTTAAAA CAGAAGTCA TGA TGGCTTCTG TTTTTTTATGTCTAA VFMJ11_1359 1439848 - 1440513 + | hypothetical protein pepN 1440651 - 1443254 + | aminopeptidase N TERM 1652 1443279 - 1443299 + F 100 -10.5 -5.95539 | opp_overlap 1443279 CTTAATTGATGAAAA TGGTCAGTA TTT TACTGGCCA TTTTTTTATTTAAGA TERM 1653 1443299 - 1443279 - f 83 -8.3 -4.30978 | opp_overlap 1443279 CTTAATTGATGAAAA TGGTCAGTA TTT TACTGGCCA TTTTTTTATTTAAGA VFMJ11_1361 1443366 - 1443590 + | hypothetical protein VFMJ11_1362 1443749 - 1448587 + | NAD-glutamate dehydrogenase TERM 1654 1448661 - 1448636 - f 77 -9.1 -3.28712 | opp_overlap 1448636 TTTGCTCTTCTATAA GGAAAGTGATT TTTT ATTCACTTTCC TTTTTTATTGCCCCG TERM 1655 1448636 - 1448661 + F 100 -9.1 -5.4505 | opp_overlap 1448636 TTTGCTCTTCTATAA GGAAAGTGATT TTTT ATTCACTTTCC TTTTTTATTGCCCCG pyrD 1448857 - 1449867 + | dihydroorotate oxidase TERM 1656 1449933 - 1449913 - f 81 -8.3 -4.18488 | opp_overlap 1449913 AGTGATTTTAACAAA GGGGAGAAT AAT ATTTTCCCC TTTTTTTATTGCTAA TERM 1657 1449913 - 1449933 + F 100 -10.5 -5.84381 | opp_overlap 1449913 AGTGATTTTAACAAA GGGGAGAAT AAT ATTTTCCCC TTTTTTTATTGCTAA VFMJ11_1364 1450084 - 1450626 + | hypothetical protein TERM 1658 1453137 - 1453127 - g 70 -5.4 -4.4267 | CTTGAAAACTTAAAA CGTA TGC TACG TGAGAACGGTACTAT VFMJ11_1365 1451195 - 1453312 + | methyltransferase VFMJ11_1366 1453397 - 1453561 + | thiol-disulfide isomerase and thioredoxin TERM 1659 1454445 - 1454412 - g 71 -6.1 -4.17048 | gap 1 CGTGCTTTAAAACAA TTACGTCGCGAGCGTT CAG AACG-TCGTGAAGTAA TGGGTAAAGCGAACA VFMJ11_1367 1453542 - 1455452 + | ABC transporter ATP-binding protein uup TERM 1660 1456662 - 1456645 - g 75 -7.7 -4.11692 | CATCGATTCTGAAAA CCACCGT GAAT ACGATGG TAAGCAGCGTCGTCA VFMJ11_1368 1455461 - 1457119 + | gammaproteobacterial enzyme C- transmembrane domain protein TERM 1661 1457174 - 1457134 - f 75 -8.3 -3.84278 | opp_overlap 1457140, overlap 1457127 1457136 1457140 AAACTTAATTAATAA GATTAAGCCTGAAGTCACA TTA TGTGGCTTCAGGCTTTTTT TATACTTGAAAAACA TERM 1662 1457172 - 1457136 - f 87 -10.9 -3.4945 | opp_overlap 1457140, overlap 1457127 1457134 1457140 ACTTAATTAATAAGA TTAAGCCTGAAGTCACA TTA TGTGGCTTCAGGCTTTT TTTATACTTGAAAAA TERM 1663 1457168 - 1457140 - f 100 -16.1 -3.48182 | opp_overlap 1457140, overlap 1457136 1457134 AATTAATAAGATTAA GCCTGAAGTCACA TTA TGTGGCTTCAGGC TTTTTTTATACTTGA TERM 1664 1457140 - 1457168 + F 100 -18.3 -5.71983 | opp_overlap 1457140 1457136 1457134 AATTAATAAGATTAA GCCTGAAGTCACA TTA TGTGGCTTCAGGC TTTTTTTATACTTGA VFMJ11_1369 1457320 - 1457493 + | ribosome modulation factor TERM 1665 1457545 - 1457521 - T 100 -11.6 -4.26634 | opp_overlap 1457521 AAAAGAATTTTAAAA TTAAAGCCTC TAGAT GAGGCTTTAA TTTTTTCTAGAGTTT TERM 1666 1457521 - 1457545 + T 100 -11.6 -5.28826 | opp_overlap 1457521 AAAAGAATTTTAAAA TTAAAGCCTC TAGAT GAGGCTTTAA TTTTTTCTAGAGTTT TERM 1667 1457675 - 1457659 - T 95 -8.7 -5.4505 | opp_overlap 1457659 GCGGGCAATAAAAAA GCTAGCC CGA AGCTAGC TTTTAGTCATTCCAA TERM 1668 1457659 - 1457675 + T 83 -8 -4.3534 | opp_overlap 1457659 GCGGGCAATAAAAAA GCTAGC CCGAA GCTAGC TTTTAGTCATTCCAA fabA 1458222 - 1457704 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA TERM 1669 1458292 - 1458308 + r 82 -8.7 -3.91084 | opp_overlap 1458282 ATCAAGTCGGATCAG CGCTGGT TAA ACCAGTG TTTAATTCGACATAA VFMJ11_1371 1459958 - 1458288 - | putative protease La family protein VFMJ11_1372 1460139 - 1460585 + | protein VV1_2627 TERM 1670 1460573 - 1460589 + T 95 -8.7 -5.4387 | opp_overlap 1460573 GGCTGACTTACATGA GCTCCTG AAA TAGGAGC TTTTTTCATTTCTCT VFMJ11_1373 1461191 - 1460637 - | lipoprotein, putative TERM 1671 1460822 - 1460834 + g 77 -4.9 -4.95155 | GCGGTAATTCGCCAT TTTGA TCT TCAAA TTTTTCTAATCTAAG TERM 1672 1461676 - 1461629 - R 83 -9.6 -3.84585 | gap 1, overlap 1461627 ATTTACCATAAAATA GCTAATAATCATTAAAT-AATAC TTC GTATTTATCCATTGATTATTAGC CTCATTCTTACAAGC VFMJ11_1374 1463778 - 1461700 - | sensor protein LuxQ TERM 1673 1461987 - 1461999 + g 70 -3.3 -4.84761 | TACTGACTATTGATA CATGG TGG CCCTG TTTTTCTAGCAATAT VFMJ11_1375 1464766 - 1463789 - | hypothetical protein VFMJ11_1376 1465532 - 1465077 - | hypothetical protein ccoN 1465803 - 1467233 + | cytochrome c oxidase, Cbb3-type, subunit I ccoO 1467246 - 1467857 + | cytochrome c oxidase, Cbb3-type, subunit II TERM 1674 1467980 - 1467961 - g 95 -4.3 -5.77571 | gap 1, overlap 1467964 AGTAAAAAACAAAAA GCACGCTT TGAAG AAGCG-GC GAATTTAGTTTTTGC ccoQ 1467868 - 1468053 + | cytochrome c oxidase, Cbb3-type, CcoQ subunit ccoP 1468050 - 1469021 + | cytochrome c oxidase, Cbb3-type, subunit III TERM 1675 1469029 - 1469054 + F 82 -7.6 -4.54297 | opp_overlap 1469032, overlap 1469027 1469032 ACAAATAATATAATA AAAGCCTCTG TATCAT CAGAGGCTTA TTCTTTTCTTATTCG TERM 1676 1469032 - 1469051 + F 93 -9.3 -4.33214 | opp_overlap 1469032, overlap 1469029 1469027 AATAATATAATAAAA GCCTCTG TATCAT CAGAGGC TTATTCTTTTCTTAT TERM 1677 1469051 - 1469032 - f 100 -9.3 -4.94147 | opp_overlap 1469029 1469027 1469032 AATAATATAATAAAA GCCTCTG TATCAT CAGAGGC TTATTCTTTTCTTAT VFMJ11_1381 1469104 - 1469583 + | lipoprotein, putative TERM 1678 1469628 - 1469649 + G 72 -10.2 -2.5497 | opp_overlap 1469631, overlap 1469627 1469626 ATGTTACCACTGCAA TGAGCCTG TACCAT CAGGCTCA AATTTTCATGTTGAT TERM 1679 1470948 - 1470931 - g 79 -5.5 -4.93877 | TGGCATGAAACAAAA CCAGATG ACGC CTTCTGG ATCATGCTTTCAGTA VFMJ11_1382 1469602 - 1471980 + | copper-translocating P-type ATPase ccoS 1471973 - 1472149 + | cytochrome oxidase maturation protein, Cbb3-type VFMJ11_1384 1472139 - 1472813 + | integral membrane protein VFMJ11_1385 1472912 - 1473661 + | transcriptional activator protein FnrA TERM 1680 1473688 - 1473715 + F 100 -13.6 -5.1287 | opp_overlap 1473675 1473688 TACTACTTTTAAAAA GTGAGGTATATC TCTT GATGTACCTCAC TTTTTTGCATCTAAC TERM 1681 1473715 - 1473688 - f 100 -11.4 -4.60487 | opp_overlap 1473688, overlap 1473675 TACTACTTTTAAAAA GTGAGGTATATC TCTT GATGTACCTCAC TTTTTTGCATCTAAC VFMJ11_1386 1473812 - 1474762 + | universal stress protein family protein TERM 1682 1474772 - 1474800 + F 72 -6 -4.3739 | opp_overlap 1474773, overlap 1474773 AGTTAAATTCCATTA AGGCCTAATTCT GAACA AGTATTAGGCCC TTTTCTCCCAAAATA TERM 1683 1474799 - 1474773 - f 77 -9.5 -3.2048 | opp_overlap 1474773 1474772 GTTAAATTCCATTAA GGCCTAATTCT GAACA AGTATTAGGCC CTTTTCTCCCAAAAT TERM 1684 1474773 - 1474799 + F 77 -9.5 -3.22113 | opp_overlap 1474773, overlap 1474772 GTTAAATTCCATTAA GGCCTAATTCT GAACA AGTATTAGGCC CTTTTCTCCCAAAAT VFMJ11_1387 1474897 - 1475820 + | tRNA s2C32 biosynthesis protein TtcA TERM 1685 1475882 - 1475829 - T 100 -19.4 -3.14404 | gap 1, opp_overlap 1475830 1475844 1475878, overlap 1475844 AGATTAATTATCTAA TACCAAATAAAAAAAGGCGCAAACG GTTAA CGTTTGCGCCTTTTTTTATTTTG-A TTTATTCAAACTATT TERM 1686 1475830 - 1475882 + T 100 -21 -4.17958 | opp_overlap 1475829 1475844, overlap 1475844 1475878 GATTAATTATCTAAT ACCAAATAAAAAAAGGCGCAAACG GTTAA CGTTTGCGCCTTTTTTTATTTTGA TTTATTCAAACTATT TERM 1687 1475844 - 1475868 + T 100 -15.8 -6.11229 | opp_overlap 1475844 1475829, overlap 1475830 TACCAAATAAAAAAA GGCGCAAACG GTTAA CGTTTGCGCC TTTTTTTATTTTGAT TERM 1688 1475868 - 1475844 - T 100 -15.8 -5.99154 | opp_overlap 1475830 1475844, overlap 1475829 TACCAAATAAAAAAA GGCGCAAACG GTTAA CGTTTGCGCC TTTTTTTATTTTGAT VFMJ11_1388 1476540 - 1475893 - | hypothetical protein VFMJ11_1389 1477276 - 1476542 - | BAX protein VFMJ11_1390 1478100 - 1477285 - | hypothetical protein VFMJ11_1391 1478414 - 1479532 + | spermidine/putrescine import ATP-binding protein PotA VFMJ11_1392 1479600 - 1480373 + | spermidine/putrescine transport system permease protein PotB TERM 1689 1480932 - 1480916 - g 77 -7.9 -4.25104 | opp_overlap 1480915 1480916 CTTCCTCTAGCAAAA CCAGCTG TCG CTGCTGG CTGGTTATTAAGTTT TERM 1690 1481070 - 1481083 + G 71 -5.3 -4.64952 | AAGTGAATGCCCTAG CAACA GTAA TGTTG TTTGTTTCTCTAATT VFMJ11_1393 1480373 - 1481143 + | spermidine/putrescine ABC transporter membrane component TERM 1691 1481208 - 1481237 + F 85 -6.5 -5.29782 | CAAATAATAAATCTG GAAGACATGCC TTTTGTTC GACATGTCTTC TTTTTTATCACTCTA VFMJ11_1394 1481268 - 1482302 + | spermidine/putrescine-binding periplasmic protein TERM 1692 1482328 - 1482348 + F 100 -12.6 -4.81551 | opp_overlap 1482328 ACTGAACCTTACTAA TGGCAGCG TATAT CGCTGCCA TTTTTGATCTCCCTC TERM 1693 1482348 - 1482328 - f 91 -12.6 -3.1886 | opp_overlap 1482328 ACTGAACCTTACTAA TGGCAGCG TATAT CGCTGCCA TTTTTGATCTCCCTC TERM 1694 1482944 - 1482958 + G 71 -7.2 -3.89346 | opp_overlap 1482932 GAACCCGAATGAGCT TCATTC TTG GAATGA TTTCTGGGATGAAAA VFMJ11_1395 1482504 - 1483547 + | spermidine/putrescine-binding periplasmic protein TERM 1695 1483585 - 1483610 + T 100 -11.3 -6.17669 | opp_overlap 1483585 ACAACACATTTAAAA GCCAATGAATC TAAT GATTTATTGGC TTTTTTTATTTTATT TERM 1696 1483610 - 1483585 - T 93 -9.1 -4.28977 | opp_overlap 1483585 ACAACACATTTAAAA GCCAATGAATC TAAT GATTTATTGGC TTTTTTTATTTTATT VFMJ11_1396 1484344 - 1483631 - | NAD-dependent deacetylase TERM 1697 1483839 - 1483823 - G 79 -6.7 -4.50761 | ACCAATCGAAATAAA TAAATCA GCC TGATTTA ACGCTTCATGGATTC TERM 1698 1484569 - 1484557 - g 74 -6.3 -4.4846 | TAACTCAACAACAAA GCTTT ACC AAAGC CGCACAGCTTCTTGA VFMJ11_1397 1484502 - 1485413 + | transcriptional regulator, LysR family VFMJ11_1398 1485653 - 1486873 + | Na+ dependent nucleoside transporter family protein TERM 1699 1486920 - 1486895 - T 100 -10.5 -5.29716 | opp_overlap 1486895 GTAAGACAATAAAAA GCCACTTGTGA ATAA TCATAAGTGGC TTTTTTTATAAATGA TERM 1700 1486895 - 1486920 + T 100 -12.7 -5.64274 | opp_overlap 1486895 GTAAGACAATAAAAA GCCACTTGTGA ATAA TCATAAGTGGC TTTTTTTATAAATGA VFMJ11_1399 1487235 - 1486945 - | lipoprotein VFMJ11_1400 1487944 - 1487288 - | pentapeptide repeat protein TERM 1701 1487970 - 1487950 - R 73 -8.4 -3.58242 | overlap 1487948 AAATAGCCATAAATA CTCCTTAA GCTTA TTAAGGAG AAGACTACCAGTAAC VFMJ11_1401 1488547 - 1488173 - | hypothetical protein VFMJ11_1402 1489271 - 1488672 - | maltose O-acetyltransferase TERM 1702 1489030 - 1489001 - G 93 -10.9 -5.06816 | gap 1, opp_overlap 1489003 1489010, overlap 1488987 ATGCTCCAATAAAAA CAGGAGC-AAGATC TAA GATCTTAACTCCTG CATTTAAAAATCCAC VFMJ11_1403 1489729 - 1489301 - | transporter VFMJ11_1404 1490363 - 1489821 - | ferrichrome-binding protein VFMJ11_1405 1492310 - 1490388 - | soluble lytic murein transglycosylase VFMJ11_1406 1492592 - 1493923 + | carbohydrate binding domain protein TERM 1703 1493936 - 1493959 + T 81 -9.6 -3.4489 | opp_overlap 1493935 1493934 TAACAAATACCAACG CCCCCTTTCT ATTC ATAAAGGGGG TTCATTATCAAGGTT VFMJ11_1407 1494518 - 1493973 - | hypothetical protein VFMJ11_1408 1495957 - 1494572 - | mate efflux family protein TERM 1704 1495473 - 1495462 - G 73 -5.8 -4.53398 | overlap 1495464 GAACATTAAAAACAA CCGT GATC ACGG ACATCACCATAATAG VFMJ11_1409 1496064 - 1497017 + | transcriptional regulator, LysR family VFMJ11_1410 1497664 - 1497032 - | metal-dependent phosphohydrolase VFMJ11_1411 1498320 - 1497652 - | hypothetical protein TERM 1705 1498401 - 1498367 - R 100 -15.3 -5.20154 | opp_overlap 1498370 1498374 ATACAATCCAAAAAA TAAGTAATGGTGCCA GAATA TGACACCATTACTTA AATAAAACTCAGTGA TERM 1706 1498370 - 1498398 + r 80 -10.4 -3.06183 | opp_overlap 1498367, overlap 1498374 CAATCCAAAAAATAA GTAATGGTGCCA GAATA TGACACCATTAC TTAAATAAAACTCAG VFMJ11_1412 1499012 - 1498467 - | maltose O-acetyltransferase VFMJ11_1413 1499753 - 1499124 - | transporter, LysE family VFMJ11_1414 1499961 - 1500419 + | hypothetical protein TERM 1707 1500438 - 1500459 + T 93 -11.7 -4.02051 | overlap 1500451 AGCTAAGCGTATTTA GGCTTTATC ACTC GATAAAGCC TTCTTTAACTTACTG VFMJ11_1415 1500702 - 1500469 - | hypothetical protein TERM 1708 1501457 - 1501437 - g 73 -7 -4.1964 | overlap 1501448 CGCAACATTCGAAAA TCTAAAAG CCATT CTTTTAGA ATACAAACTCACACA VFMJ11_1416 1500892 - 1501653 + | cellobiose phosphotransferase system CelC VFMJ11_1417 1501975 - 1501661 - | phosphoribosylaminoimidazole carboxylase ATPase subunit VFMJ11_1418 1502486 - 1501992 - | hypothetical protein VFMJ11_1419 1503162 - 1502704 - | hypothetical protein VFMJ11_1420 1503693 - 1503226 - | acetyltransferase TERM 1709 1503682 - 1503704 + g 82 -7.8 -4.63932 | overlap 1503681 TTCCTGGTATGTTTT GATGACTATC ATT GATGGTTATC TTTTATTAAACCATA VFMJ11_1421 1504229 - 1503690 - | ribosomal-protein-serine acetyltransferase VFMJ11_1422 1504403 - 1504236 - | hypothetical protein phnA 1504763 - 1504428 - | alkylphosphonate utilization operon protein PhnA TERM 1710 1504885 - 1504865 - R 95 -9 -5.19879 | opp_overlap 1504865 CCGCAAATACAAAAA CGCCCCAT TCAAG ATGAGGCG TTAATATTTAAAACG VFMJ11_1424 1505936 - 1504905 - | hypothetical cytosolic protein TERM 1711 1506079 - 1506056 - H 83 -8.4 -4.38141 | overlap 1506053 CTTGATACAAAAGAA TAAAAAATGA ACAG TCATTTTTTA AACAATCTAATAAAT VFMJ11_1425 1506235 - 1508166 + | ggdef domain protein TERM 1712 1508205 - 1508174 - T 76 -9.6 -2.90431 | opp_overlap 1508173 1508181, overlap 1508173 1508181 ATATTTAAATATAAT GTTTAAAGCCTGTA ATTA CACAGGCTTTAAAT CGTGCATTATTTAGC TERM 1713 1508198 - 1508181 - T 71 -7.7 -3.63707 | opp_overlap 1508181 1508173, overlap 1508174 1508173 AATATAATGTTTAAA GCCTGTA ATTA CACAGGC TTTAAATCGTGCATT VFMJ11_1426 1508604 - 1508212 - | hypothetical protein TERM 1714 1508749 - 1508733 - R 72 -5.9 -4.36063 | ACAATATGACCAAAA CGTAAAA CAT TCTTACG TAACCTGTTGTAATG TERM 1715 1508926 - 1508903 - R 100 -11 -5.20783 | opp_overlap 1508903 ATTTAAATATAAAAA GCCGAACAAG TTAC CCTGCTCGGC TTTTAGGTGTATTTT TERM 1716 1508903 - 1508926 + r 74 -6.6 -4.30885 | opp_overlap 1508903 ATTTAAATATAAAAA GCCGAACAAG TTAC CCTGCTCGGC TTTTAGGTGTATTTT VFMJ11_1427 1509254 - 1508970 - | transcriptional regulator, XRE family VFMJ11_1428 1509655 - 1509251 - | hypothetical protein VFMJ11_1429 1510079 - 1509612 - | NTP pyrophosphohydrolase including oxidative damage repair enzyme VFMJ11_1430 1510250 - 1510116 - | hypothetical protein VFMJ11_1431 1510709 - 1510557 - | hypothetical protein VFMJ11_1432 1511293 - 1510706 - | zeta toxin family protein TERM 1717 1510997 - 1511013 + g 71 -6.6 -4.08064 | opp_overlap 1510997 1510996 1510991 1510999 1511002 1511004 1511007, overlap 1511007 ATAAACAAAGATAAT GAGAAC AGCAC GTTCTC TTTTCAAAGAACGTT VFMJ11_1433 1511904 - 1511590 - | virulence gene repressor RsaL TERM 1718 1511995 - 1511977 - R 78 -7.5 -4.2349 | opp_overlap 1511990 TTTTCATATGCAAAA TATACGC AAGTA GCGTATA GATAACAAAACTATA VFMJ11_1434 1512735 - 1512148 - | cold-shock DNA-binding domain protein VFMJ11_1435 1513509 - 1512880 - | hypothetical protein TERM 1719 1513339 - 1513359 + g 71 -6.1 -4.27796 | opp_overlap 1513339 1513344 AAATGCAGAGAAAAA CGTAAGCAT TGT ATGCATGCG TTTTCGACTTTCTTG TERM 1720 1513359 - 1513339 - G 74 -3.9 -5.01546 | opp_overlap 1513339, overlap 1513344 AAATGCAGAGAAAAA CGTAAGCAT TGT ATGCATGCG TTTTCGACTTTCTTG VFMJ11_1436 1514716 - 1513673 - | hypothetical protein VFMJ11_1437 1516018 - 1514801 - | hypothetical protein VFMJ11_1438 1517707 - 1516181 - | reverse transcriptase TERM 1721 1517984 - 1517998 + r 93 -5.8 -5.9362 | opp_overlap 1517971 CATACCCTTTAATGG GTAAAT TTC ATTTAC TTTTTTTATGTTTTG TERM 1722 1518132 - 1518109 - R 100 -14.6 -5.43414 | opp_overlap 1518109 ATCAGACACAAAAAA GCCGAGCAAG TTAC CCTGCTCGGC TTTTGAATTTATGAC TERM 1723 1518109 - 1518132 + r 100 -12.4 -4.39571 | opp_overlap 1518109 ATCAGACACAAAAAA GCCGAGCAAG TTAC CCTGCTCGGC TTTTGAATTTATGAC VFMJ11_1439 1519190 - 1518168 - | formate dehydrogenase, cytochrome B556 subunit TERM 1724 1518568 - 1518587 + g 70 -5.8 -4.39002 | ATGAACCATTGAATG TCTGTCTT GTTG AAGATAGA TTTTCTCCACCATTT TERM 1725 1519091 - 1519129 + g 83 -11.8 -3.22223 | opp_overlap 1519127 1519128 CGCTCTTCGCGGCTG CACTCTCATTTGCCATGC TTG GCATAGCAAATGAAAGCG TTAATGCTGCCATTA TERM 1726 1519160 - 1519127 - G 86 -10.3 -4.12738 | opp_overlap 1519091, overlap 1519128 GCATAGCAAATGAAA GCGTTAATGCTGCCA TTAG CGGCAGCAATAACGA AAGAGAAAGACGTTT TERM 1727 1519159 - 1519128 - G 93 -13.8 -3.0692 | opp_overlap 1519091, overlap 1519127 CATAGCAAATGAAAG CGTTAATGCTGCCA TTAG CGGCAGCAATAACG AAAGAGAAAGACGTT VFMJ11_1440 1519815 - 1519207 - | formate dehydrogenase iron-sulfur subunit TERM 1728 1519380 - 1519395 + g 71 -7.6 -3.95051 | overlap 1519371 ATTTACCTTCAGCGA TACGGT TTGC ACCGTA TTTCTCACGTTCTTC VFMJ11_1441 1522684 - 1519829 - | molybdopterin oxidoreductase VFMJ11_1442 1522894 - 1522697 - | formate dehydrogenase region TAT target VFMJ11_1443 1523581 - 1522979 - | cytoplasmic chaperone TorD family protein VFMJ11_1444 1525262 - 1523586 - | formate hydrogenlyase subunit 6 TERM 1729 1524491 - 1524522 + g 74 -6 -4.46854 | overlap 1524516 1524517 TCTCTCCACCCTCTT TTTTGTAGTTTGCT AATA AGCGAGTTGCAAAA TTTTGCGTTTTCTCT TERM 1730 1525423 - 1525461 + r 93 -9.6 -4.17416 | overlap 1525424 GGGAGTTATTTTTAT GCGGGACATTTTGTCTCA ACT TGGTTCAAAATGTCCCGA TTCTTTATATGGTCT TERM 1731 1525424 - 1525460 + r 88 -13.1 -3.09365 | overlap 1525423 GGAGTTATTTTTATG CGGGACATTTTGTCTCA ACT TGGTTCAAAATGTCCCG ATTCTTTATATGGTC VFMJ11_1445 1525984 - 1525466 - | hypothetical protein VFMJ11_1446 1526423 - 1525965 - | hypothetical protein VFMJ11_1447 1526571 - 1527392 + | FdhD protein TERM 1732 1527488 - 1527430 - T 100 -11.2 -4.22407 | opp_overlap 1527436 1527442, overlap 1527431 1527433 TAGGAAAAGCAGAAA CTAG-GAGATGCAGGGACGAGTAAGAGC GAAAA GCAGTTACTCGTCCCTGC-TCTCACTTA CCACTAGTCCCTAAA TERM 1733 1527487 - 1527431 - T 87 -12.5 -3.12359 | opp_overlap 1527436 1527442, overlap 1527430 1527433 AGGAAAAGCAGAAAC TAG-GAGATGCAGGGACGAGTAAGAGC GAAAA GCAGTTACTCGTCCCTGC-TCTCACTT ACCACTAGTCCCTAA TERM 1734 1527484 - 1527433 - T 100 -15.3 -3.10614 | gap 1, opp_overlap 1527436 1527442, overlap 1527431 1527430 GAAAAGCAGAAACTA GGAGATGCAGGGACGAGTAAGAGC GAAAA GCAGTTACTCGTCCCTGC-TCTCA CTTACCACTAGTCCC TERM 1735 1527436 - 1527481 + T 100 -15.6 -2.53382 | gap 1, opp_overlap 1527433 1527431 1527430, overlap 1527442 AAGCAGAAACTAGGA GATGCAGGGACGAGTAAGAGC GAAAA GCAGTTACTCGTCCCTGC-TC TCACTTACCACTAGT TERM 1736 1527442 - 1527476 + T 87 -12.9 -2.66733 | opp_overlap 1527433 1527431 1527430, overlap 1527436 AAACTAGGAGATGCA GGGACGAGTAAGAGC GAAAA GCAGTTACTCGTCCC TGCTCTCACTTACCA VFMJ11_1448 1529731 - 1527638 - | two-component response regulator VFMJ11_1449 1531034 - 1529871 - | membrane-bound lytic murein transglycosylase C TERM 1737 1530227 - 1530238 + g 81 -7.2 -4.63184 | opp_overlap 1530226 1530227 CTAATTTAAAGACAT CCGC TCCT GCGG TTTTTGGGATCACTT TERM 1738 1530445 - 1530457 + g 77 -6.3 -4.62475 | ACGTAATACGCTTTA CCATT TTT AATGG TTTTAGTTTGTAACT TERM 1739 1531226 - 1531259 + r 73 -7.7 -3.72775 | gap 1, opp_overlap 1531235, overlap 1531235 TCACACTTTTTTGAC GTAAAAAAACCGTC ACTATTG GACGGTTT-TTTAC TGTTTATTAATAAGT TERM 1740 1531251 - 1531235 - R 83 -5.1 -5.47218 | opp_overlap 1531226 1531235 TTTGACGTAAAAAAA CCGTC ACTATTG GACGG TTTTTTACTGTTTAT TERM 1741 1531235 - 1531251 + r 80 -5.1 -5.34055 | opp_overlap 1531235, overlap 1531226 TTTGACGTAAAAAAA CCGTC ACTATTG GACGG TTTTTTACTGTTTAT VFMJ11_1450 1533166 - 1531274 - | methyl-accepting chemotaxis protein TERM 1742 1532841 - 1532858 + g 84 -7 -4.84359 | TTTAACGATGGATCT TGGCGT TGCATC ACGCCA TTTTTGTCACCGTAA TERM 1743 1533405 - 1533378 - R 100 -10.8 -6.06529 | opp_overlap 1533377 1533378 CAGACATAAAAAAAA CCTAAGAACAAT AAAG ATTATTCTTAGG CTTTAAAAAAGTGAG pcp 1534069 - 1533431 - | pyroglutamyl-peptidase I VFMJ11_1452 1534986 - 1534081 - | permease VFMJ11_1453 1535673 - 1534996 - | permease TERM 1744 1535777 - 1535750 - R 100 -11.4 -4.21465 | opp_overlap 1535749 GGTAAAACCAAACAA CCCCAAAACGTT ATAG AACATTTCGGGG CATTTAACGAGTATA VFMJ11_1454 1537120 - 1535876 - | transporter VFMJ11_1455 1538158 - 1537202 - | regulator of kinase autophosphorylation inhibitor TERM 1745 1537252 - 1537264 + g 80 -7.7 -4.47707 | TATGTAACTCAGCTT CTGCA CTA TGCAG TTCTTTTTCGTAGAA TERM 1746 1537577 - 1537563 - G 70 -3.6 -5.00616 | TCTTCTGGTAAAAAA TCATCA TAT TGATAA CTCGGGATCACCCCT VFMJ11_1456 1538870 - 1538142 - | hypothetical protein VFMJ11_1457 1539517 - 1538870 - | LamB/YcsF family protein VFMJ11_1458 1540455 - 1539559 - | hypothetical protein TERM 1747 1539671 - 1539647 - G 71 -5 -4.48713 | overlap 1539648 GGTAGTAACAATAAA TGTCTGCTGT CAAGC ACAGCAAACT CTGAACTTAGACGAT TERM 1748 1539670 - 1539648 - G 70 -8.5 -3.28505 | overlap 1539647 GTAGTAACAATAAAT GTCTGCTGT CAAGC ACAGCAAAC TCTGAACTTAGACGA TERM 1749 1541365 - 1541396 + G 93 -11 -4.74767 | gap 1, opp_overlap 1541365 ATACGCTAGAAATAA TTGAAGCAGAC-TGG TCA CCAAGTCCGCTTCAA TTTTCTGTTGCTTAT TERM 1750 1541396 - 1541365 - g 100 -13.2 -4.08279 | gap 1, opp_overlap 1541365 ATACGCTAGAAATAA TTGAAGCAGAC-TGG TCA CCAAGTCCGCTTCAA TTTTCTGTTGCTTAT VFMJ11_1459 1540602 - 1541495 + | transcriptional regulator, LysR family VFMJ11_1460 1544362 - 1541492 - | hypothetical protein TERM 1751 1542943 - 1542961 + g 74 -6 -4.46514 | overlap 1542945 CTAAGTAATCTAGGC GATCAAAC ATA GTTTGAAC TTTATTTGCATCCAT VFMJ11_1461 1545521 - 1544364 - | beta-lactamase TERM 1752 1544811 - 1544791 - G 72 -8.4 -3.524 | opp_overlap 1544794, overlap 1544794 TATTTATCGACATAA TAACTGGA CGCTT TCCAGTTA ATCAGAAAGTTGTCT VFMJ11_1462 1546012 - 1545662 - | hypothetical protein VFMJ11_1463 1546605 - 1546075 - | ribosomal-protein-alanine acetyltransferase TERM 1753 1546720 - 1546700 - R 100 -11.2 -6.06529 | opp_overlap 1546697 TATAGACAAAAAAAA GCCACGAT ATGTG ATCGTGGC TGACTATTTAAATCA VFMJ11_1464 1548993 - 1546750 - | peptidase U32 VFMJ11_1465 1549165 - 1549809 + | stringent starvation protein A VFMJ11_1466 1550279 - 1549806 - | acetyltransferase, gnat family VFMJ11_1467 1550803 - 1550369 - | acetyltransferase, gnat family VFMJ11_1468 1551023 - 1550805 - | hypothetical protein TERM 1754 1550962 - 1550944 - G 74 -3.8 -5.14894 | AAAAAAGCATAAAAA GAGACACC AAC GTTATCTC CCTTTTGTTCTATTT VFMJ11_1469 1551903 - 1551058 - | 3-mercaptopyruvate sulfurtransferase VFMJ11_1470 1552709 - 1551927 - | dTDP-glucose 4,6-dehydratase VFMJ11_1471 1553172 - 1552729 - | ribosomal-protein-alanine acetyltransferase VFMJ11_1472 1553358 - 1555049 + | carbohydrate binding domain protein TERM 1755 1555087 - 1555068 - T 100 -10.7 -5.99154 | opp_overlap 1555068 TATCAAATAAAAAAA TGGGCCG TTTCGT CGGCCCA TTCTTATTTAAAATA TERM 1756 1555068 - 1555087 + T 100 -10.7 -4.09628 | opp_overlap 1555068 TATCAAATAAAAAAA TGGGCCG TTTCGT CGGCCCA TTCTTATTTAAAATA VFMJ11_1473 1555940 - 1555095 - | lipoprotein, putative TERM 1757 1556119 - 1556092 - R 100 -13.6 -5.3167 | opp_overlap 1556092 TAAAAATAAAGAAAA GCCCTTTAACTC TATA GAATTAAAGGGC TTTATTTACTATGCC TERM 1758 1556092 - 1556119 + r 100 -11.4 -4.53602 | opp_overlap 1556092 TAAAAATAAAGAAAA GCCCTTTAACTC TATA GAATTAAAGGGC TTTATTTACTATGCC VFMJ11_1474 1556616 - 1556128 - | hypothetical protein VFMJ11_1475 1557157 - 1556762 - | putative membrane protein, suppressor for copper-sensitivity A VFMJ11_1476 1557716 - 1557258 - | hypothetical protein TERM 1759 1557783 - 1557757 - R 100 -13.8 -5.56673 | opp_overlap 1557757 ATCCATAATAAAAAA GGCTTACCACAG TTT CTGCGATAAGCC TCTCATTCAATCAAA TERM 1760 1557757 - 1557783 + r 73 -9.4 -2.92192 | opp_overlap 1557757 ATCCATAATAAAAAA GGCTTACCACAG TTT CTGCGATAAGCC TCTCATTCAATCAAA VFMJ11_1477 1559381 - 1557825 - | glycine betaine transporter TERM 1761 1558306 - 1558296 - G 70 -5.4 -4.35742 | ACCCAATGATGAAAA CCAA AAA TTGG TCGCAATTGGAGCAA TERM 1762 1558973 - 1558959 - G 72 -4.3 -4.74103 | overlap 1558972 TCCCCAATGTAAAAA GCTTT GGCTT AAAGC TGGAGCAACTGCTGC VFMJ11_1478 1559783 - 1560106 + | hypothetical protein VFMJ11_1479 1560145 - 1560801 + | FeuP TERM 1763 1561138 - 1561123 - g 75 -2.6 -5.1861 | gap 1, opp_overlap 1561126, overlap 1561126 GCGAGTACCAAAAAA GATGAAC TTC GTTC-TC GTTCTTTATGGGATA TERM 1764 1561771 - 1561784 + G 73 -6.7 -4.29432 | overlap 1561766 TCCGATCGTGTTGAT GCCAT ATCA ATGGC TTTTGATAAAGTTTA VFMJ11_1480 1560820 - 1562184 + | sensor protein PhoQ TERM 1765 1562230 - 1562189 - T 100 -10.3 -4.32678 | overlap 1562186 1562190 TGGCTAAATAAATAA CCTCGTACGTTATCCATTA TTGC CAATAGGTAACGTACGAGT CCTGATAACCAATAT TERM 1766 1562229 - 1562190 - T 93 -13.8 -3.18884 | overlap 1562189 1562186 GGCTAAATAAATAAC CTCGTACGTTATCCATTA TTGC CAATAGGTAACGTACGAG TCCTGATAACCAATA VFMJ11_1481 1563475 - 1562198 - | snare associated golgi protein TERM 1767 1562635 - 1562649 + g 70 -2.9 -5.10933 | opp_overlap 1562635, overlap 1562642 CGACTAAATTAATAT CATTT CTCGA AAATG TTTTGTTTTCAATCC TERM 1768 1563192 - 1563181 - G 72 -4.4 -4.73105 | opp_overlap 1563181 AGCGAGAAAAAACAA GAAC GATA GTTC CTCTCTTTTGCAATA TERM 1769 1563410 - 1563396 - G 78 -4.2 -5.26875 | overlap 1563397 GCTGCAATTAAAAAA GGTTCC CCA GGAACA AATACATTAGGTCCT TERM 1770 1563409 - 1563397 - G 70 -7.7 -3.75402 | overlap 1563396 CTGCAATTAAAAAAG GTTCC CCA GGAAC AAATACATTAGGTCC VFMJ11_1482 1564227 - 1563496 - | glycosyltransferase involved in cell wall biogenesis VFMJ11_1483 1564458 - 1564640 + | hypothetical protein VFMJ11_1484 1566928 - 1564886 - | C4-dicarboxylate transport sensor protein DctB TERM 1771 1565850 - 1565865 + g 83 -6.2 -5.10497 | opp_overlap 1565849 CCTAATTGGACAGAC TTCACT ACAA AGTGAA TTTTTTCGATCGGTT VFMJ11_1485 1568352 - 1566925 - | C4-dicarboxylate transport transcriptional regulatory protein DctD TERM 1772 1567129 - 1567141 + g 87 -6.3 -5.29716 | GCCTTCTTTATTCCT TGATG CAT CATCA TTTTTATTCTGTTCA VFMJ11_1486 1568634 - 1569455 + | extracellular tungstate binding protein VFMJ11_1487 1569459 - 1570157 + | molybdenum transport system permease protein ModB VFMJ11_1488 1570171 - 1570878 + | molybdenum transport ATP-binding protein ModC mobA 1570856 - 1571440 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 1773 1572548 - 1572532 - g 70 -2.9 -5.08255 | ATCGCTAAAACAAAA GTGGCAA TCT TCTCCAC AGGTGATGAAGTTCA VFMJ11_1490 1571437 - 1573218 + | molybdopterin biosynthesis MoeA protein TERM 1774 1573253 - 1573270 + F 100 -11.3 -5.18726 | opp_overlap 1573253 1573250 ATAACTCTAAATTTA GCCTCAC TTTT GTGAGGC TTTTTCTTATAAAGC TERM 1775 1573270 - 1573253 - f 83 -11.3 -2.66593 | opp_overlap 1573253, overlap 1573250 ATAACTCTAAATTTA GCCTCAC TTTT GTGAGGC TTTTTCTTATAAAGC TERM 1776 1573624 - 1573609 - g 76 -3.2 -5.18643 | opp_overlap 1573609 TGAATTAAAACAAAA CGCATT AAAC ACTGCG GTTCGTGCTATTGAG VFMJ11_1491 1573436 - 1574500 + | hypothetical protein TERM 1777 1574539 - 1574517 - T 88 -7 -4.83615 | opp_overlap 1574517 TATCTTTTATAAAAA GGCCTACAAC CTT ACTGTAAGCC TTAGTAAAATTTATT VFMJ11_1492 1577087 - 1574553 - | LysM domain protein TERM 1778 1575563 - 1575553 - G 70 -5.4 -4.3534 | GGTGAATTACCAAAA CCAA CCC TTGG CGTGAATAACATCCC TERM 1779 1575582 - 1575605 + g 88 -3.9 -5.74288 | gap 1, overlap 1575584 1575586 GAATAACATCCCAAC GCTACCATCT CCTCT AGGTGGT-GC TTTTTTATTATTTAT VFMJ11_1493 1577694 - 1577101 - | hypothetical protein VFMJ11_1494 1579940 - 1577676 - | Rhs element Vgr family protein TERM 1780 1580012 - 1579959 - R 72 -8.3 -3.50572 | overlap 1579960 ATTCACCTGATAGAA GCTCGATTGCATTGCTTATGGAGCA CTCA TAAACCATAAGCAATGCAATAGAAA TAAAACGACAAACAG TERM 1781 1580011 - 1579960 - R 84 -11.8 -2.70022 | overlap 1579959 TTCACCTGATAGAAG CTCGATTGCATTGCTTATGGAGCA CTCA TAAACCATAAGCAATGCAATAGAA ATAAAACGACAAACA TERM 1782 1580045 - 1580025 - R 74 -6.8 -4.27846 | opp_overlap 1580027, overlap 1580027 AAATAAAACGACAAA CAGGGCCA ACATG TGGCCCTT ACTTTAATGATTGTT TERM 1783 1580043 - 1580027 - R 80 -9.4 -3.70401 | opp_overlap 1580027, overlap 1580025 ATAAAACGACAAACA GGGCCA ACATG TGGCCC TTACTTTAATGATTG TERM 1784 1580027 - 1580043 + r 80 -9.4 -3.59233 | opp_overlap 1580025 1580027 ATAAAACGACAAACA GGGCCA ACATG TGGCCC TTACTTTAATGATTG VFMJ11_1495 1580590 - 1580072 - | BfdA VFMJ11_1496 1580737 - 1580615 - | hypothetical protein TERM 1785 1580757 - 1580742 - H 72 -6.2 -4.40601 | opp_overlap 1580742 AATTGATACAAGAAA TTGGAT GGTT ATCCAA TAAATTGAATCTAAT VFMJ11_1497 1580879 - 1581211 + | SEC-C motif domain protein TERM 1786 1581306 - 1581263 - T 95 -8.5 -5.34555 | opp_overlap 1581263 GCACACTACAAAAAA GAGCCTC-TGTTTATCTGTTA GTAA TAACAAACAA-CATGAGGCTC TTTTTGTATCTAAAT TERM 1787 1581263 - 1581306 + T 76 -4.1 -5.04597 | opp_overlap 1581263 GCACACTACAAAAAA GAGCCTC-TGTTTATCTGTTA GTAA TAACAAACAA-CATGAGGCTC TTTTTGTATCTAAAT VFMJ11_1498 1582418 - 1581507 - | N-acetyl-D-glucosamine kinase TERM 1788 1582499 - 1582512 + r 70 -4.5 -4.82154 | CAGACTGTGACCTAT CCGAT ATTC GTCGG TTTTTAGTGTGAATT VFMJ11_1499 1583287 - 1582544 - | DTW domain containing protein TERM 1789 1582982 - 1582971 - G 75 -5.8 -4.67635 | opp_overlap 1582971 GGGAAAACCACAAAA GGCT GATA AGCC TCATTATTTAGCAGT VFMJ11_1500 1583379 - 1584182 + | sterol desaturase TERM 1790 1584213 - 1584184 - T 100 -12.3 -4.83246 | opp_overlap 1584190, overlap 1584190 TTAGAAAGAAATAAA CAAAAAGGCGATC CGAA GATCGCCTTTTTT ATTTATAGATTATGT TERM 1791 1584207 - 1584190 - T 100 -11.3 -5.56573 | opp_overlap 1584190, overlap 1584184 AGAAATAAACAAAAA GGCGATC CGAA GATCGCC TTTTTTATTTATAGA TERM 1792 1584190 - 1584207 + T 100 -11.3 -5.72622 | opp_overlap 1584184 1584190 AGAAATAAACAAAAA GGCGATC CGAA GATCGCC TTTTTTATTTATAGA VFMJ11_1501 1585846 - 1584254 - | putative efflux pump component MtrF TERM 1793 1585428 - 1585414 - G 71 -5 -4.49314 | overlap 1585415 TACCAGCAAAAACAA CGGTTA CAG TAACCA TACGCTTAGATGCAC VFMJ11_1502 1586205 - 1586684 + | NlpC TERM 1794 1586722 - 1586693 - T 100 -13.1 -5.72622 | opp_overlap 1586698 GTTATAAACAAAAAA GCTAAGTGAAATA CCCC TACTTCACTTAGC TTCACCATTTCATTA VFMJ11_1503 1587083 - 1586748 - | hypothetical protein VFMJ11_1504 1587341 - 1588207 + | phosphatidylserine decarboxylase TERM 1795 1588261 - 1588230 - f 76 -7.4 -4.02334 | opp_overlap 1588235, overlap 1588235 TATTCACACGACAAA TACAATGAGATGGT ACTT ACCATCTCATTTTT TGTTTAATGTTAAAC TERM 1796 1588256 - 1588235 - f 93 -11.7 -3.92485 | opp_overlap 1588235, overlap 1588230 ACACGACAAATACAA TGAGATGGT ACTT ACCATCTCA TTTTTTGTTTAATGT TERM 1797 1588235 - 1588256 + F 100 -11.7 -5.69793 | opp_overlap 1588235 1588230 ACACGACAAATACAA TGAGATGGT ACTT ACCATCTCA TTTTTTGTTTAATGT VFMJ11_1505 1588444 - 1588647 + | hypothetical protein ribE_2 1589262 - 1588654 - | riboflavin synthase, alpha subunit VFMJ11_1507 1589521 - 1590903 + | multidrug resistance protein NorM (Na+/drug antiporter) TERM 1798 1590930 - 1590954 + T 100 -11.5 -5.86976 | opp_overlap 1590930 AAAACAATGAAAAAA GCCGAACATAT TAG ATATGCTCGGC TTTTTTATTTTCTAA TERM 1799 1590954 - 1590930 - T 100 -13.7 -5.43514 | opp_overlap 1590930 AAAACAATGAAAAAA GCCGAACATAT TAG ATATGCTCGGC TTTTTTATTTTCTAA VFMJ11_1508 1591997 - 1590993 - | tetratricopeptide repeat family protein TERM 1800 1591568 - 1591586 + g 79 -8.9 -3.81 | opp_overlap 1591568 1591570 CTAGCTCTTTATATA CAGGTTC CATTT GAACCTG TTGTTCTGCCGTCAT VFMJ11_1509 1593367 - 1592051 - | chondroitin sulfate/heparin utilization regulation protein TERM 1801 1593892 - 1593906 + G 73 -2.1 -5.26875 | AGTTAATAACTTAAG TTGGC AGCAG GCTAA TTTTTTCATTCAAAA VFMJ11_1510 1593569 - 1594363 + | hypothetical protein TERM 1802 1594410 - 1594431 + T 100 -13 -4.42806 | opp_overlap 1594410 TTTCACAAATAAAAA CAGCGCCG CAAGTT CGGCGCTG TTTGTTTAAAAGTCG TERM 1803 1594431 - 1594410 - T 100 -13 -5.38054 | opp_overlap 1594410 TTTCACAAATAAAAA CAGCGCCG CAAGTT CGGCGCTG TTTGTTTAAAAGTCG VFMJ11_1511 1595258 - 1594437 - | transcriptional regulator, LysR family VFMJ11_1512 1596740 - 1595430 - | hypothetical protein VFMJ11_1513 1598437 - 1596740 - | transporter VFMJ11_1514 1599500 - 1598430 - | von Willebrand factor, type A VFMJ11_1515 1600029 - 1599490 - | hypothetical protein VFMJ11_1516 1600964 - 1600026 - | MoxR protein TERM 1804 1600121 - 1600133 + g 70 -2.7 -5.09895 | TTGCTGCCATTAATT GAATA AGT TGTTC TTTTTTCAATGACTG VFMJ11_1517 1601986 - 1600973 - | MoxR protein VFMJ11_1518 1604343 - 1602067 - | tetratricopeptide repeat family protein TERM 1805 1604514 - 1604497 - R 88 -6.9 -4.9725 | opp_overlap 1604497 1604498, overlap 1604498 ACTTTTATATAAAAA GGGGCTC CGAA GAGCCCT CTTAATTAAGAACTG TERM 1806 1604498 - 1604513 + r 83 -10.4 -3.24032 | opp_overlap 1604497 1604498, overlap 1604497 CTTTTATATAAAAAG GGGCTC CGAA GAGCCC TCTTAATTAAGAACT TERM 1807 1604513 - 1604498 - R 86 -10.4 -3.57627 | opp_overlap 1604498 1604497, overlap 1604497 CTTTTATATAAAAAG GGGCTC CGAA GAGCCC TCTTAATTAAGAACT VFMJ11_1519 1606092 - 1604545 - | sulfatase family protein VFMJ11_1520 1606317 - 1607867 + | sulfatase family protein TERM 1808 1607881 - 1607900 + F 71 -5.6 -4.53036 | opp_overlap 1607880 1607883, overlap 1607883 AACACAAACAAAACT CAGGGCTC ATAT GGGCCCTA TTTTGCTATTTATAA TERM 1809 1607883 - 1607898 + F 75 -8.2 -3.86037 | opp_overlap 1607880 1607883, overlap 1607881 CACAAACAAAACTCA GGGCTC ATAT GGGCCC TATTTTGCTATTTAT VFMJ11_1521 1607935 - 1608840 + | hypothetical protein VFMJ11_1522 1608815 - 1608931 + | hypothetical protein VFMJ11_1523 1609016 - 1610587 + | sulfatase family protein TERM 1810 1610638 - 1610601 - T 100 -19.3 -3.16872 | opp_overlap 1610606, overlap 1610606 AGTAATATCTAAAAC TAAAACGCCCCGAGCGA ATAT TCACTCGGGGCGTTTTT CTATCTGAAATCTAG TERM 1811 1610606 - 1610633 + T 100 -17 -5.03994 | opp_overlap 1610601 1610606 TATCTAAAACTAAAA CGCCCCGAGCGA ATAT TCACTCGGGGCG TTTTTCTATCTGAAA TERM 1812 1610633 - 1610606 - T 100 -19.2 -4.68645 | opp_overlap 1610606, overlap 1610601 TATCTAAAACTAAAA CGCCCCGAGCGA ATAT TCACTCGGGGCG TTTTTCTATCTGAAA VFMJ11_1524 1610925 - 1610650 - | hypothetical protein VFMJ11_1525 1611277 - 1610933 - | hypothetical protein VFMJ11_1526 1611497 - 1611781 + | DNA-binding protein VFMJ11_1527 1611781 - 1612221 + | hypothetical protein VFMJ11_1528 1612218 - 1612415 + | putative periplasmic protein TERM 1813 1612442 - 1612419 - T 100 -10.4 -5.38958 | opp_overlap 1612419 ACGGACAAATAAAAA GTGAAACCAG TTAT CTAGTTTCAC TTTCTTTACGTGGTA TERM 1814 1612419 - 1612442 + T 84 -8.2 -4.47183 | opp_overlap 1612419 ACGGACAAATAAAAA GTGAAACCAG TTAT CTAGTTTCAC TTTCTTTACGTGGTA VFMJ11_1529 1612970 - 1612626 - | lipoprotein, putative VFMJ11_1530 1613532 - 1613080 - | conserved hyhpothetical protein VFMJ11_1531 1613749 - 1613588 - | hypothetical protein VFMJ11_1532 1613914 - 1614519 + | hypothetical protein VFMJ11_1533 1615049 - 1614597 - | lipoprotein, putative TERM 1815 1615117 - 1615091 - R 100 -10.2 -5.50723 | opp_overlap 1615091 TGATTAAAACAAAAA CACTCGACAAAT TTT AACTGTCGAGTG TTTTTAGATTATTCA TERM 1816 1615091 - 1615117 + r 86 -8.1 -4.8143 | opp_overlap 1615091 TGATTAAAACAAAAA CACTCGACA AATTTTAAC TGTCGAGTG TTTTTAGATTATTCA VFMJ11_1534 1616413 - 1615148 - | putative ATP-dependent RNA helicase RhlE TERM 1817 1615811 - 1615830 + g 77 -5 -5.00388 | AACTTCTTCTGGAAA CGTTGCTG AAAA CAGTAATG TTTGTTTTTGCTTTG VFMJ11_1535 1616981 - 1616562 - | hypothetical protein VFMJ11_1536 1617592 - 1617014 - | lipoprotein, putative TERM 1818 1617716 - 1617691 - R 72 -9.1 -2.50545 | opp_overlap 1617691, overlap 1617690 1617689 TTCTGACAATAAATT TGCCAAGTCAC TCTA ATAACTTGGCA TTGAATATAAAAAAA VFMJ11_1537 1618590 - 1617772 - | hypothetical protein TERM 1819 1619154 - 1619124 - R 73 -9 -3.29837 | overlap 1619122 TGTTAAATATGAATA TCTCGCCGTCAGTA AAA TGCTGACGGCTAAA AATAACTCAAGCAAC VFMJ11_1538 1619598 - 1619161 - | helix-turn-helix domain protein VFMJ11_1539 1619948 - 1619607 - | hypothetical protein TERM 1820 1620284 - 1620246 - H 90 -11.3 -3.53343 | gap 1, opp_overlap 1620259, overlap 1620247 1620250 1620259 AATTCTTGCTCTAAA TTCATCATCGAAACGTTT ACGC AAACGTTTCGATGA-GTA TAAAACAAACAATAA TERM 1821 1620284 - 1620247 - H 83 -11.5 -2.71791 | opp_overlap 1620259, overlap 1620246 1620250 1620259 ATTCTTGCTCTAAAT TCATCATCGAAACGTTT ACGC AAACGTTTCGATGAGTA TAAAACAAACAATAA TERM 1822 1620281 - 1620250 - H 100 -17.6 -2.64155 | opp_overlap 1620259, overlap 1620246 1620247 1620259 CTTGCTCTAAATTCA TCATCGAAACGTTT ACGC AAACGTTTCGATGA GTATAAAACAAACAA VFMJ11_1540 1620333 - 1620752 + | high affinity ribose transport protein RbsD TERM 1823 1621099 - 1621087 - g 72 -3.4 -5.0133 | TAGGCCGTGAAAAAA CCAA TGCGT TTGG CGGGATCAAATGGTC VFMJ11_1541 1620765 - 1622279 + | ribose import ATP-binding protein RbsA VFMJ11_1542 1622276 - 1623262 + | ribose transport system permease protein RbsC TERM 1824 1623359 - 1623326 - f 81 -8.3 -4.16397 | gap 1, opp_overlap 1623333 CTGTAAAACAAAATA GGCACAA-CCAAACGT ACC ATGTTTGACTTGTGCC GCCCTACACCTTATA VFMJ11_1543 1623386 - 1624264 + | D-ribose-binding periplasmic protein rbsK 1624455 - 1625372 + | ribokinase TERM 1825 1625419 - 1625381 - f 85 -9.1 -4.00868 | GCATTGATAATTAAA TATCGTTGCCTGTAT TTGTATTTC ATATAGGCAACGATA TAAACAAGGATTGAA VFMJ11_1545 1625438 - 1626445 + | transcriptional regulator, LacI family TERM 1826 1626525 - 1626480 - T 75 -9.9 -2.5619 | opp_overlap 1626480, overlap 1626479 1626482 GTAAAACCGATCAAG GAGTCTCTTATCATATTCCTT TCTA ATGGAAGATAATAAGAGGCTC TTTCTATTCTAATAA TERM 1827 1626480 - 1626525 + T 100 -9.9 -4.29304 | opp_overlap 1626479 1626480 1626482 GTAAAACCGATCAAG GAGTCTCTTATCATATTCCTT TCTA ATGGAAGATAATAAGAGGCTC TTTCTATTCTAATAA VFMJ11_1546 1627391 - 1626534 - | DNA ligase TERM 1828 1627654 - 1627686 + H 77 -9.5 -3.2794 | opp_overlap 1627651 ATCAATATGAGATGT TTATTTATAGATAAT TCT AATATCTATAAATAA TTCATATAACTCAAC VFMJ11_1547 1627718 - 1630372 + | nuclease TERM 1829 1630396 - 1630425 + T 100 -10.8 -5.07652 | opp_overlap 1630399, overlap 1630399 AAGAGCATTAAATAA AAATGGCGGAGT ATCTAC ACTCCGCCATTC TTTTATTTTGAAGCC TERM 1830 1630399 - 1630422 + T 100 -12.5 -4.6313 | opp_overlap 1630399, overlap 1630396 AGCATTAAATAAAAA TGGCGGAGT ATCTAC ACTCCGCCA TTCTTTTATTTTGAA TERM 1831 1630422 - 1630399 - T 100 -13.2 -5.34309 | opp_overlap 1630399 1630396 AGCATTAAATAAAAA TGGCGGAGTA TCTA CACTCCGCCA TTCTTTTATTTTGAA VFMJ11_1548 1631858 - 1630428 - | mate efflux family protein TERM 1832 1632030 - 1631996 - R 100 -10.3 -4.58395 | opp_overlap 1632005, overlap 1632005 GTTATTTCCTAAAAA TAAAAAAAACCACAA ACTAA TTGTGGTTTTCTTCA AACAGTGGAAGTAAT TERM 1833 1632005 - 1632021 + r 76 -6.6 -4.63486 | opp_overlap 1631996 1632005 TAAAAATAAAAAAAA CCACAA ACTAA TTGTGG TTTTCTTCAAACAGT TERM 1834 1632021 - 1632005 - R 100 -6.6 -6.4275 | opp_overlap 1632005, overlap 1631996 TAAAAATAAAAAAAA CCACAA ACTAA TTGTGG TTTTCTTCAAACAGT VFMJ11_1549 1632797 - 1632051 - | hypothetical protein TERM 1835 1632827 - 1632851 + H 75 -7.2 -4.16842 | CAAATAGATTTTATT GAGTATAGTG TTATT CCCTATACTC TTTGTTAAAAATAAG VFMJ11_1550 1633535 - 1634917 + | sodium/alanine symporter TERM 1836 1634930 - 1634955 + F 71 -7.7 -3.60074 | opp_overlap 1634930 TAGCGTACCAATGAA TTGTCTCTG TTAATTTT CAGAGACAA TTTGAAACATTTATG TERM 1837 1635166 - 1635182 + F 84 -5.8 -5.2197 | opp_overlap 1635166 AAACCCAATTTAAAA GCAGCT TTCTC GGCTGC TTTTTCATTTTTGTG TERM 1838 1635962 - 1635942 - g 85 -7.6 -4.84359 | TCAGGGTTAGAAAAA CTGATCAG TATTG CCGATCAG TTGGACATCAATACC VFMJ11_1551 1635282 - 1636967 + | mechanosensitive ion channel TERM 1839 1636973 - 1637008 + T 76 -7.6 -4.02979 | opp_overlap 1636975, overlap 1636974 AGACAACTAAACAAA AAGTGCCATGCGTATT CAAC AATAGGCATGGCACAC TTTCATTCATCTTTT TERM 1840 1636974 - 1637007 + T 83 -11.1 -3.00161 | opp_overlap 1636975, overlap 1636973 GACAACTAAACAAAA AGTGCCATGCGTATT CAAC AATAGGCATGGCACA CTTTCATTCATCTTT TERM 1841 1637006 - 1636975 - T 100 -14.6 -5.39681 | opp_overlap 1636974 1636973 ACAACTAAACAAAAA GTGCCATGCGTATT CAAC AATAGGCATGGCAC ACTTTCATTCATCTT VFMJ11_1552 1637672 - 1637049 - | homoserine/homoserine lactone efflux protein VFMJ11_1553 1638415 - 1637762 - | hypothetical protein VFMJ11_1554 1638754 - 1638885 + | hypothetical protein TERM 1842 1638926 - 1638947 + F 95 -8.7 -5.36314 | AGCTTCTCTCTCATT TGGCCTCGA ACTC TCGGGGTCA TTTTTTGATATTTTA VFMJ11_1555 1639050 - 1640534 + | thermostable carboxypeptidase 1 TERM 1843 1640577 - 1640545 - f 77 -9.3 -3.33348 | opp_overlap 1640545 1640545 1640555, overlap 1640543 GGTAAGAGTACAACA GCCAGTAACTC GCTTACCTTAA GAGTTACTGGC TCATATTCAAGTTAA TERM 1844 1640545 - 1640577 + F 72 -9.3 -2.76046 | opp_overlap 1640543 1640545, overlap 1640545 1640555 GGTAAGAGTACAACA GCCAGTAACTC GCTTACCTTAA GAGTTACTGGC TCATATTCAAGTTAA TERM 1845 1640823 - 1640812 - g 89 -4.4 -5.64873 | overlap 1640817 CTCAACAATAAAAAA GAGT ATCC ACTC ATTAGGGGAGTATCT VFMJ11_1556 1640726 - 1641367 + | hypothetical protein VFMJ11_1557 1641357 - 1641692 + | hypothetical protein VFMJ11_1558 1641826 - 1642365 + | hypothetical protein TERM 1846 1642373 - 1642387 + F 75 -10 -2.73203 | overlap 1642372 1642375 TAAAATAGTTGTTGC GAGTGC AGT GCACTC ATTCATTCTTGATAA VFMJ11_1559 1642722 - 1642865 + | hypothetical protein VFMJ11_1560 1642867 - 1643004 + | hypothetical protein TERM 1847 1643056 - 1643079 + F 86 -6 -5.4833 | GAGTCTTTAATAAAA TGGATGTGGT TTGG GCTGCATCCA TTTTTTGTTCAATGC VFMJ11_1561 1643222 - 1644352 + | threonine synthase VFMJ11_1562 1644355 - 1644732 + | endoribonuclease L-PSP, putative VFMJ11_1563 1645531 - 1644737 - | transcriptional regulator, LysR family TERM 1848 1645772 - 1645821 + H 87 -10.2 -3.86981 | opp_overlap 1645759 1645768, overlap 1645774 1645778 1645797 AGGGATAAGACCTAC TTTATCCTCGATCGGGGATA TACATTGACT TATCCCCGATCGGGTATATA TTATTAATTATCCTC TERM 1849 1645774 - 1645819 + H 93 -12.8 -3.51235 | opp_overlap 1645759 1645768, overlap 1645772 1645778 1645797 GGATAAGACCTACTT TATCCTCGATCGGGGATA TACATTGACT TATCCCCGATCGGGTATA TATTATTAATTATCC TERM 1850 1645778 - 1645815 + H 93 -13.6 -3.21182 | opp_overlap 1645768, overlap 1645774 1645772 1645797 AAGACCTACTTTATC CTCGATCGGGGATA TACATTGACT TATCCCCGATCGGG TATATATTATTAATT VFMJ11_1564 1645857 - 1646120 + | HTH-type transcriptional regulator HipB VFMJ11_1565 1646120 - 1647442 + | protein HipA TERM 1851 1647605 - 1647629 + T 73 -4.3 -4.98857 | opp_overlap 1647605 GAAGTGATTAAAAAA TGGATACAG ATATTGC CTGCATCCA TTTTTCTAGTTAGGT TERM 1852 1647629 - 1647605 - T 88 -7.2 -5.18357 | opp_overlap 1647605 GAAGTGATTAAAAAA TGGATACAGA TATTG CCTGCATCCA TTTTTCTAGTTAGGT VFMJ11_1566 1651692 - 1647754 - | hypothetical protein TERM 1853 1651703 - 1651713 + H 73 -4 -5.16038 | TCCAAAGCTTATTCA CTAT TAA ATAG TTTTCTTTATTCTAT VFMJ11_1567 1652279 - 1652554 + | hypothetical protein VFMJ11_1568 1652556 - 1653107 + | putative exonuclease VFMJ11_1569 1653957 - 1653058 - | transcriptional regulator, LysR family VFMJ11_1570 1654096 - 1655784 + | exoenzyme regulatory protein AepA TERM 1854 1655833 - 1655802 - f 73 -7.4 -3.8823 | opp_overlap 1655809 1655830, overlap 1655806 1655809 ATAAAAAGAAAGCAA CAAAGAAGCAGC TTAGATTG GCTGCTTTTTTG TAAATCTGCAAATTC TERM 1855 1655809 - 1655826 + F 80 -4.8 -5.29782 | opp_overlap 1655806 1655802 1655809 GAAAGCAACAAAGAA GCAGCT TAGATT GGCTGC TTTTTTGTAAATCTG VFMJ11_1571 1655947 - 1656933 + | tetratricopeptide repeat family protein VFMJ11_1572 1657092 - 1657211 + | hypothetical protein TERM 1856 1657245 - 1657278 + T 82 -11.2 -2.53921 | opp_overlap 1657250, overlap 1657250 ACCAGAAGTAAAAAT AAAAATGCCGATGA CGTTAA TCATCGGCATTTTA GTATGTATTTATAAT TERM 1857 1657250 - 1657273 + T 100 -11.1 -4.43864 | opp_overlap 1657250, overlap 1657245 AAGTAAAAATAAAAA TGCCGATGA CGTTAA TCATCGGCA TTTTAGTATGTATTT TERM 1858 1657273 - 1657250 - T 100 -11.8 -5.67529 | opp_overlap 1657250 1657245 AAGTAAAAATAAAAA TGCCGATGAC GTTA ATCATCGGCA TTTTAGTATGTATTT VFMJ11_1573 1657990 - 1657304 - | aquaporin Z TERM 1859 1658269 - 1658236 - R 83 -7.6 -4.67556 | opp_overlap 1658244, overlap 1658239 1658244 ACAATACCCCAAAAA CAATAAAAGCTTGG ATTTCG CCAAGCTTTTATAA GAATTAATCTCAGTT TERM 1860 1658266 - 1658239 - R 100 -11.5 -4.43351 | opp_overlap 1658244, overlap 1658236 1658244 ATACCCCAAAAACAA TAAAAGCTTGG ATTTCG CCAAGCTTTTA TAAGAATTAATCTCA TERM 1861 1658261 - 1658244 - R 88 -7 -5.16681 | opp_overlap 1658244, overlap 1658239 1658236 CCAAAAACAATAAAA GCTTGG ATTTCG CCAAGC TTTTATAAGAATTAA TERM 1862 1658244 - 1658261 + r 78 -7 -4.4017 | opp_overlap 1658244 1658239 1658236 CCAAAAACAATAAAA GCTTGG ATTTCG CCAAGC TTTTATAAGAATTAA VFMJ11_1574 1658856 - 1658284 - | hypothetical protein TERM 1863 1659337 - 1659349 + G 71 -6.3 -4.15788 | CGTTAATAAAGGACT TTCTG AAC CAGAA TTTATTGCCAAAATT VFMJ11_1575 1659107 - 1660531 + | exodeoxyribonuclease I TERM 1864 1660680 - 1660701 + G 85 -5.9 -5.24531 | gap 1, opp_overlap 1660680 TATTTGCAAACCAGA TTGGACAGCC ACA GGTTG-CCAA TTTTTTATGCGCAAT VFMJ11_1576 1660633 - 1660878 + | murein hydrolase exporter VFMJ11_1577 1660878 - 1661552 + | hypothetical protein TERM 1865 1661586 - 1661632 + F 74 -6.8 -4.43864 | opp_overlap 1661604 1661608, overlap 1661589 1661591 CAATATGGTGTGACT TCTCTCTCATTGATGTAA TTTATGTAACT TTACATCAATGAGTGTGA TTTTGATCTATGTTT cdd 1661704 - 1662597 + | cytidine deaminase TERM 1866 1662627 - 1662657 + T 85 -9.1 -3.93026 | opp_overlap 1662627 1662633, overlap 1662633 TCTTTAACTAAAGAC TTAAAAGGAGGCT TTGTT GGCCTCCTTTTTA TTTGATTAACATCTT TERM 1867 1662633 - 1662651 + T 90 -8.1 -5.38326 | opp_overlap 1662627 1662633, overlap 1662627 ACTAAAGACTTAAAA GGAGGCT TTGTT GGCCTCC TTTTTATTTGATTAA TERM 1868 1662651 - 1662633 - T 81 -7.4 -4.32903 | opp_overlap 1662633 1662627, overlap 1662627 ACTAAAGACTTAAAA GGAGGC TTTGTTG GCCTCC TTTTTATTTGATTAA VFMJ11_1579 1663842 - 1662679 - | amidase, putative purT 1664059 - 1665234 + | phosphoribosylglycinamide formyltransferase 2 TERM 1869 1665245 - 1665283 + F 93 -9 -4.70626 | opp_overlap 1665243 1665245 1665246 1665252, overlap 1665246 ATTAAGTTACAAATA TGTATAACAGAATGGTTT CAA ATACCGTTCTGTTGTACC TTTTTAACCTTCTTA TERM 1870 1665246 - 1665282 + F 93 -12.5 -3.41291 | opp_overlap 1665245 1665243 1665246 1665252, overlap 1665245 TTAAGTTACAAATAT GTATAACAGAATGGTTT CAA ATACCGTTCTGTTGTAC CTTTTTAACCTTCTT VFMJ11_1581 1665423 - 1666613 + | aspartate aminotransferase TERM 1871 1666632 - 1666673 + T 81 -11 -2.76087 | opp_overlap 1666635 1666644, overlap 1666644 TCAGAAGTAATTGTA AGACATAGAAAAGGCGCT TTAATT AGCGCCTTTTTTATGCCA GTTTCACACTCTCTT TERM 1872 1666670 - 1666635 - T 90 -13.5 -3.11178 | opp_overlap 1666632 1666644, overlap 1666644 GAAGTAATTGTAAGA CATAGAAAAGGCGCT TTAATT AGCGCCTTTTTTATG CCAGTTTCACACTCT TERM 1873 1666661 - 1666644 - T 86 -8.4 -4.68124 | opp_overlap 1666632 1666644, overlap 1666635 GTAAGACATAGAAAA GGCGCT TTAATT AGCGCC TTTTTTATGCCAGTT TERM 1874 1666644 - 1666661 + T 90 -8.4 -5.25803 | opp_overlap 1666644 1666635, overlap 1666632 GTAAGACATAGAAAA GGCGCT TTAATT AGCGCC TTTTTTATGCCAGTT VFMJ11_1582 1667870 - 1666677 - | SAM-dependent methyltransferase TERM 1875 1667843 - 1667820 - G 100 -9.6 -5.4477 | opp_overlap 1667820 1667818 AAATTGCCAAAAAAA GACCGTCTGC GATA ACAAACGGTC TATATTTAAAAACTG VFMJ11_1583 1668877 - 1667903 - | HTH-type transcriptional regulator CysB VFMJ11_1584 1669145 - 1669924 + | ATPase involved in DNA repair TERM 1876 1669944 - 1669960 + T 100 -10.9 -5.77988 | opp_overlap 1669944 TACCTACCAAAAAAA GATCGCA TAA TGCGATC TTTTTTTATGTCTGT TERM 1877 1669960 - 1669944 - T 100 -10.9 -5.53991 | opp_overlap 1669944 TACCTACCAAAAAAA GATCGCA TAA TGCGATC TTTTTTTATGTCTGT VFMJ11_1585 1670745 - 1669987 - | tRNA-(ms[2]io[6]A)-hydroxylase VFMJ11_1586 1670969 - 1671352 + | hypothetical protein VFMJ11_1587 1671769 - 1671383 - | transporter TERM 1878 1671604 - 1671592 - G 70 -5.5 -4.39277 | TAATATGAGAAGAAA GCACT TGA AGCGC TTCAGCTTGGAGTCT TERM 1879 1671987 - 1671972 - R 86 -6.1 -5.5112 | opp_overlap 1671972 1671966 TTTAGCAACAAAAAA CCGCT ACAATG AGCGG TTTTTATATCATTTG TERM 1880 1671972 - 1671987 + r 83 -6.1 -5.06585 | opp_overlap 1671972, overlap 1671966 TTTAGCAACAAAAAA CCGCT ACAATG AGCGG TTTTTATATCATTTG VFMJ11_1588 1673704 - 1672022 - | hypothetical cytosolic protein TERM 1881 1673083 - 1673061 - G 71 -6.3 -4.20696 | overlap 1673053 CCACGAACGGTAAAA CCATCAACA CCTTT TGTTGGTGG AATACGTCGAATCAG VFMJ11_1589 1674057 - 1673770 - | glutaredoxin VFMJ11_1590 1674843 - 1674097 - | hypothetical protein TERM 1882 1674932 - 1674943 + H 70 -4.4 -4.81814 | opp_overlap 1674932 TTAACAGAAAAAATA GCAA TCGT TTGC TTTTCTTGTGGTAGT purC 1675020 - 1676123 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1883 1676153 - 1676173 + T 100 -13.3 -5.47431 | opp_overlap 1676153 ATGACCAAATAAAAA TGGCGACCG CAT TGGTCGCCA TTTTTTATCTCTTCA TERM 1884 1676173 - 1676153 - T 100 -12.6 -5.34309 | opp_overlap 1676153 ATGACCAAATAAAAA TGGCGACC GCATT GGTCGCCA TTTTTTATCTCTTCA VFMJ11_1592 1676688 - 1676215 - | hypothetical protein TERM 1885 1676713 - 1676733 + r 100 -9.7 -4.93316 | opp_overlap 1676712 1676711 1676713 1676715 TATTTTTACAAAAGG GAGCGGCAA CCT TTGACGCTC TTTTTAATATTATTG TERM 1886 1676733 - 1676713 - R 75 -9.7 -2.53422 | opp_overlap 1676713, overlap 1676712 1676711 1676715 TATTTTTACAAAAGG GAGCGGCAA CCT TTGACGCTC TTTTTAATATTATTG hrpA 1680694 - 1676798 - | ATP-dependent helicase HrpA TERM 1887 1678729 - 1678719 - G 76 -6.8 -4.41348 | TGTTTCTTAAATAAA CCAG AAG CTGG GAAGATATGGAATCG TERM 1888 1679468 - 1679448 - G 72 -3.3 -5.02323 | GGACGAGAAATAAAA TCTTCTTCA GAG TAAAGACGA ATACAGATACCTTCA TERM 1889 1679748 - 1679758 + g 79 -5.4 -4.94902 | ACAATTTCCGTATCA CGTA GAT TACG TTTTTCTAATGCTTC TERM 1890 1680406 - 1680419 + g 77 -5.3 -4.9445 | opp_overlap 1680406, overlap 1680400 TTTCACCAGCAACGA TAACC ACTT GGTTA TTTTTGATTGCTTCT TERM 1891 1680914 - 1680898 - g 77 -8.7 -3.93369 | TTAACGGTAAGCAAA TCGAGCG TGA CGCTCAA GGGTATTTAAAAAAT TERM 1892 1680946 - 1680929 - g 81 -5.6 -5.09225 | AGGGTATTTAAAAAA TCACAC GGATTG GTGTGA AGAGTTAGTTCCACT TERM 1893 1681099 - 1681089 - g 72 -4.6 -4.788 | AAAGCAATGGAAAAA GAGC ATG GCCC TGAAAAAGGTAACAG VFMJ11_1594 1680876 - 1681202 + | sulfurtransferase TusE (tRNA 2-thiouridine synthesizingprotein E) TERM 1894 1681226 - 1681267 + T 83 -9.7 -3.73659 | CTTATTGCTTAACTT TGGCAAGAATTAATACATT TTAA AATCGGTTAATTCTTGCCA TTGTGTCTCTTCTTT VFMJ11_1595 1681507 - 1681235 - | acylphosphatase VFMJ11_1596 1681594 - 1682997 + | methyl-accepting chemotaxis protein TERM 1895 1683011 - 1683039 + F 74 -6.2 -4.56736 | opp_overlap 1683005 AGTTAATAAGTTTAA GCTATCTATA TTTTTTATT TATAGATAGC TTTTACTTCTTCAAT TERM 1896 1684179 - 1684167 - g 70 -7.7 -3.63195 | overlap 1684163 CAAACACTAAATCAA CGTTC TTT GAACG CTAGCAAAAATGTAG TERM 1897 1684415 - 1684403 - g 70 -3.4 -4.8622 | opp_overlap 1684403 1684408 TGCTTCAATTAAAAA CATG GCCAA CATG GTTGGTTCCGTCAGA VFMJ11_1597 1683297 - 1685258 + | methyl-accepting chemotaxis protein TERM 1898 1685267 - 1685312 + F 78 -7.1 -4.36778 | gap 1, opp_overlap 1685276, overlap 1685274 1685276 TAAATAAAATCCTTC TCCAATCTAGCCATGGAAAGTT TAT AGCTTTTCATGGCTT-ATTTGA TTTTCACTTCTATTT TERM 1899 1685274 - 1685307 + F 89 -9.1 -4.23528 | gap 1, opp_overlap 1685276, overlap 1685267 1685276 AATCCTTCTCCAATC T-AGCCATGGAAAGTT TAT AGCTTTTCATGGCTTA TTTGATTTTCACTTC TERM 1900 1685276 - 1685304 + F 100 -13.3 -4.21465 | opp_overlap 1685276, overlap 1685274 1685267 TCCTTCTCCAATCTA GCCATGGAAAGTT TAT AGCTTTTCATGGC TTATTTGATTTTCAC VFMJ11_1598 1685421 - 1686611 + | methyltransferase TERM 1901 1686690 - 1686666 - T 100 -18.7 -5.30199 | opp_overlap 1686666 AAAAATTAATAAAAA GGCGAGAAGGA TGA TCCTTCTCGCC TTTTTTATTCACTAT TERM 1902 1686666 - 1686690 + T 100 -18.7 -5.49234 | opp_overlap 1686666 AAAAATTAATAAAAA GGCGAGAAGGA TGA TCCTTCTCGCC TTTTTTATTCACTAT VFMJ11_1599 1698626 - 1686717 - | iron-regulated protein FrpC TERM 1903 1688832 - 1688813 - G 70 -5.8 -4.39998 | gap 1, opp_overlap 1688812 1688808, overlap 1688809 GATCCACATAAGAAA CTTGACCTG TTG CAG-TCAAG GTTCCATCTTCTACA TERM 1904 1694545 - 1694558 + g 71 -3.9 -4.87807 | TTCGTCCCTTCCAGA GAAAT AACG ATTTC TTTTTGCTCTGTTCC TERM 1905 1694827 - 1694840 + g 71 -6.7 -4.08144 | GAACCTAATGCTTGT CCAGA TAAT TCTGG TTTATCGTTAGTGCC TERM 1906 1698924 - 1698912 - g 70 -3.4 -4.85653 | CAGAGACAAAAGAAA CACA ATTAG TGTG GAGTCTTTATAATGA VFMJ11_1600 1698848 - 1699198 + | hypothetical protein TERM 1907 1699219 - 1699267 + T 81 -9.2 -3.72494 | gap 1, opp_overlap 1699229 1699233, overlap 1699233 ATTTTATCTTTGTGA TAAATAAAAACAAAGGTGGCTCA ATTA TG-GCCACCTTTTTTGTTGTTTA TGTTTATTAAGTTAC TERM 1908 1699257 - 1699229 - T 85 -6.8 -5.38054 | gap 1, opp_overlap 1699219 1699233, overlap 1699233 TGTGATAAATAAAAA CAAAGGTGGCTCA ATTA TG-GCCACCTTTT TTGTTGTTTATGTTT TERM 1909 1699233 - 1699253 + T 93 -7.6 -5.74288 | gap 1, opp_overlap 1699233 1699229, overlap 1699219 ATAAATAAAAACAAA GGTGGCTCA ATTA TG-GCCACC TTTTTTGTTGTTTAT TERM 1910 1699253 - 1699233 - T 88 -7.6 -5.1502 | gap 1, opp_overlap 1699219 1699233, overlap 1699229 ATAAATAAAAACAAA GGTGGCTCA ATTA TG-GCCACC TTTTTTGTTGTTTAT VFMJ11_1601 1700740 - 1699274 - | putative cryptic C4-dicarboxylate transporter DcuD iadA 1701887 - 1700751 - | beta-aspartyl peptidase TERM 1911 1701463 - 1701451 - G 83 -6.3 -5.16572 | opp_overlap 1701458 ACTGAAGGTAAAAAA GAGAT ATC ATCTC GAATGGATGTAGTTA VFMJ11_1603 1702081 - 1702980 + | transcriptional regulator TERM 1912 1703004 - 1702978 - T 90 -8 -5.04385 | opp_overlap 1702982, overlap 1702982 CATAGCTTGAAAAAA TAAAGGCGACCA TTA TGGCCACCTTTT TTGTTGTTTAATTCA TERM 1913 1703000 - 1702982 - T 95 -8.8 -5.04249 | opp_overlap 1702982, overlap 1702978 GCTTGAAAAAATAAA GGCGACCA TTA TGGCCACC TTTTTTGTTGTTTAA TERM 1914 1702982 - 1703000 + T 85 -4.4 -5.72254 | opp_overlap 1702982 1702978 GCTTGAAAAAATAAA GGCGACCA TTA TGGCCACC TTTTTTGTTGTTTAA VFMJ11_1604 1704916 - 1703012 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 1915 1705079 - 1705056 - R 93 -8.2 -5.66229 | opp_overlap 1705056 ATTAACAACAAAAAA GGCTACCAAA CAAA CTTGATAGCC TTCATACAAAATTAC VFMJ11_1605 1705751 - 1705110 - | thiopurine S-methyltransferase TERM 1916 1706632 - 1706620 - g 71 -4.8 -4.64495 | AGCCAAGAAAAAGAA GAGC TAGCG GCTC CTATCAATACTTTTG VFMJ11_1606 1705996 - 1707366 + | transporter, DAACS family TERM 1917 1707406 - 1707388 - T 78 -7.4 -4.23758 | opp_overlap 1707388 ATGTTAGACCGAAAA GGAAGCTA AAT TGGCTTCC TTTTTTTATTGCTGC TERM 1918 1707388 - 1707406 + T 100 -9.6 -5.84381 | opp_overlap 1707388 ATGTTAGACCGAAAA GGAAGCTA AAT TGGCTTCC TTTTTTTATTGCTGC TERM 1919 1707475 - 1707465 - T 80 -2.6 -5.63517 | TCTTCAAATAAAAAA TAAT TGC ATTA GAAAAACTAATCTGA TERM 1920 1707728 - 1707695 - T 100 -10.5 -4.2704 | opp_overlap 1707697 1707704, overlap 1707684 1707680 1707697 1707704 TTTAGTATTAACAAA TACAAAAAAGGAGCT CATC AGCTCCTTTTTTATT TTCCAGCTTTTACAA TERM 1921 1707726 - 1707697 - T 95 -13.1 -3.73445 | opp_overlap 1707697 1707704, overlap 1707680 1707695 1707704 TAGTATTAACAAATA CAAAAAAGGAGCT CATC AGCTCCTTTTTTA TTTTCCAGCTTTTAC TERM 1922 1707697 - 1707726 + T 100 -10.9 -4.19276 | opp_overlap 1707680 1707697 1707695 1707704, overlap 1707704 TAGTATTAACAAATA CAAAAAAGGAGCT CATC AGCTCCTTTTTTA TTTTCCAGCTTTTAC TERM 1923 1707719 - 1707704 - T 95 -9 -5.61913 | opp_overlap 1707697 1707704, overlap 1707697 1707695 AACAAATACAAAAAA GGAGCT CATC AGCTCC TTTTTTATTTTCCAG TERM 1924 1707704 - 1707719 + T 100 -9 -5.79595 | opp_overlap 1707704 1707697 1707695, overlap 1707697 AACAAATACAAAAAA GGAGCT CATC AGCTCC TTTTTTATTTTCCAG VFMJ11_1607 1708268 - 1707738 - | exonuclease KapD VFMJ11_1608 1709876 - 1708359 - | ggdef family protein VFMJ11_1609 1710123 - 1710755 + | hypothetical protein VFMJ11_1610 1710755 - 1712575 + | heat shock protein 70 TERM 1925 1712611 - 1712641 + F 100 -12.6 -4.41353 | opp_overlap 1712613 AGTTACGCATCTTAA GAGTTCAGTCACCG TTA TGGAGGCTGAACTC TTTTACTATATATCC TERM 1926 1712972 - 1712948 - g 84 -7.9 -4.75372 | ACCACGCATCAAAAA GTCAGCTCACT GAA AATGATCTGAC GCTGCCTTGGAATGT TERM 1927 1713028 - 1713015 - g 76 -2.3 -5.36441 | GGGGGAGATAAAAAA CGCCA TCAT TGGTG AATGGGCCCGTGAAT TERM 1928 1714238 - 1714225 - g 73 -2.3 -5.33131 | GAAGAAAAAAACAAA CAGCC TCAA GGCTT ATGTTTATTAGCAAA TERM 1929 1714823 - 1714813 - g 73 -2.4 -5.21709 | CTTGATAGTAAAAAA CGTC GTC GCCG CTCTGACAAACACGA VFMJ11_1611 1712758 - 1715574 + | heat shock protein 70 TERM 1930 1715660 - 1715634 - f 100 -10.2 -4.7254 | opp_overlap 1715652 ATCTTTGATGAAAAA TTGCACACCACT GTC AAAGGTGTGCAA ACATCATCTTATTCT VFMJ11_1612 1715735 - 1716037 + | hypothetical protein TERM 1931 1716044 - 1716075 + T 89 -8.9 -4.28774 | opp_overlap 1716049, overlap 1716049 CGGGTATAATATACA AAAAAGCTCATTG CCTTCA CAATGAGCTTTTC TTTTAAATTAAATCA TERM 1932 1716070 - 1716049 - T 100 -9.5 -5.48787 | opp_overlap 1716049 1716044 ATAATATACAAAAAA GCTCATTGC CTTC ACAATGAGC TTTTCTTTTAAATTA TERM 1933 1716049 - 1716070 + T 95 -8.8 -5.13343 | opp_overlap 1716049, overlap 1716044 ATAATATACAAAAAA GCTCATTG CCTTCA CAATGAGC TTTTCTTTTAAATTA VFMJ11_1613 1716606 - 1716133 - | hypothetical protein VFMJ11_1614 1716823 - 1717974 + | hypothetical protein TERM 1934 1718009 - 1718024 + T 89 -7.5 -5.25656 | opp_overlap 1718009 CTCTGATACTAAAAA GGCCC TGTTAT GGGCC TTTTTTAATGCTTTT TERM 1935 1718024 - 1718009 - T 83 -7.5 -4.8048 | opp_overlap 1718009 CTCTGATACTAAAAA GGCCC TGTTAT GGGCC TTTTTTAATGCTTTT TERM 1936 1718048 - 1718092 + T 75 -7.2 -4.14977 | opp_overlap 1718056, overlap 1718056 TGCTTTTCAATTCAT ATAAAAAATGCCGCTGATTC TCTAT GAACCAGCGGCATTCTATAC TTATTTATGCTCTTC TERM 1937 1718084 - 1718056 - T 100 -15.4 -5.38951 | opp_overlap 1718048 1718056 AATTCATATAAAAAA TGCCGCTGATTC TCTAT GAACCAGCGGCA TTCTATACTTATTTA TERM 1938 1718056 - 1718084 + T 95 -13.2 -3.66438 | opp_overlap 1718056, overlap 1718048 AATTCATATAAAAAA TGCCGCTGATTC TCTAT GAACCAGCGGCA TTCTATACTTATTTA udp 1718869 - 1718111 - | uridine phosphorylase TERM 1939 1719044 - 1719062 + r 85 -8.8 -4.10672 | opp_overlap 1719044 CATAAAAATAGAAAA GCGCTCAT AAT ACGAGCGC TTTAATTTGAGTTAC TERM 1940 1719062 - 1719044 - R 100 -11 -5.02287 | opp_overlap 1719044 CATAAAAATAGAAAA GCGCTCAT AAT ACGAGCGC TTTAATTTGAGTTAC cadA 1721417 - 1719102 - | cadmium-translocating P-type ATPase TERM 1941 1721065 - 1721075 + g 74 -4 -5.0916 | GATTCATCTTTTGTT CTTA CTG TAAG TTTTTCTGTTGCAAA TERM 1942 1721493 - 1721474 - R 82 -8.6 -4.08546 | ACCATTAACTATAAA CCTTAGAG TTAA CTCCAAGG TCAAGGATATTTTTT TERM 1943 1721545 - 1721519 - R 76 -7.5 -3.96148 | gap 1, opp_overlap 1721526, overlap 1721503 1721526 TTTTTCTATCAGAAA CAAAAAAGACAC CGAA GTGTCT-TTTTG TAAGAAGAGATGAAA TERM 1944 1721526 - 1721539 + r 80 -6.7 -4.82901 | opp_overlap 1721526 1721519 ATCAGAAACAAAAAA GACAC CGAA GTGTC TTTTTGTAAGAAGAG TERM 1945 1721539 - 1721526 - R 89 -6.7 -5.73978 | opp_overlap 1721526, overlap 1721519 ATCAGAAACAAAAAA GACAC CGAA GTGTC TTTTTGTAAGAAGAG VFMJ11_1617 1721984 - 1721568 - | CBS domain containing protein VFMJ11_1618 1723705 - 1722113 - | hypothetical protein TERM 1946 1723853 - 1723821 - R 100 -15.1 -3.30214 | opp_overlap 1723821 AACTCATTACAGGAA TTTCGCGCTACTTTA CCA CAAAATAGCGCGAAA TTAGATCATTATATG TERM 1947 1723821 - 1723853 + r 89 -12.2 -3.15677 | opp_overlap 1723821 AACTCATTACAGGAA TTTCGCGCTACTTT ACCAC AAAATAGCGCGAAA TTAGATCATTATATG VFMJ11_1619 1726894 - 1723862 - | FAD linked oxidase, C-domain protein TERM 1948 1724929 - 1724946 + g 83 -7.1 -4.78326 | CTTCATGAACTTCAT GAGAATA ATCG TATTCTC TTTCTTTATTTAAAG VFMJ11_1620 1727076 - 1727765 + | hypothetical protein TERM 1949 1727849 - 1727817 - T 87 -10.8 -3.35046 | opp_overlap 1727822, overlap 1727822 TCATCCTTCCAAATA GAAAACAGCCAATA ATTGA TATTGGCTGTTTTT TTACTTACAAAACTA TERM 1950 1727822 - 1727844 + T 100 -10.7 -5.63103 | opp_overlap 1727817 1727822 CTTCCAAATAGAAAA CAGCCAATA ATTGA TATTGGCTG TTTTTTTACTTACAA TERM 1951 1727844 - 1727822 - T 100 -10.7 -4.78848 | opp_overlap 1727822, overlap 1727817 CTTCCAAATAGAAAA CAGCCAATA ATTGA TATTGGCTG TTTTTTTACTTACAA VFMJ11_1621 1728934 - 1727873 - | L-asparaginase 2 VFMJ11_1622 1729273 - 1729962 + | probable transcriptional regulator SyrB VFMJ11_1623 1730076 - 1730258 + | hypothetical protein VFMJ11_1624 1730937 - 1730242 - | transcriptional regulator, GntR family VFMJ11_1625 1731872 - 1730946 - | ferrochelatase VFMJ11_1626 1732278 - 1733306 + | general L-amino acid-binding periplasmic protein AapJ TERM 1952 1733348 - 1733365 + F 100 -11.3 -4.28548 | opp_overlap 1733347 1733343, overlap 1733364 AAAAACACAATTTAT GGGGTGA ATCT TCACCCC TTTTAATAAATGGAT TERM 1953 1733454 - 1733478 + G 73 -5.8 -4.62054 | gap 1 CGTGCGATTTTATTT CAAGTGATAGC CGTT GCTG-CACTTG TCTTTTTTTTCTACA VFMJ11_1627 1733397 - 1734563 + | general L-amino acid transport system permease protein AapQ VFMJ11_1628 1734566 - 1735663 + | general L-amino acid transport system permease protein AapM TERM 1954 1736044 - 1736034 - g 70 -3.2 -4.86731 | overlap 1736035 TTTGGGTAAAGAAAA TGCC TAA AGCA GAGGCTGAAGCTCTA VFMJ11_1629 1735691 - 1736440 + | general L-amino acid transport ATP-binding protein AapP TERM 1955 1736469 - 1736490 + F 88 -7.3 -5.07486 | opp_overlap 1736469 AATCCTCAGGTTAAA GCAGTGATC GTTT GATTGCTGC TTTTTGTTACAGATG VFMJ11_1630 1736659 - 1737321 + | SecY stabilizing membrane protein TERM 1956 1737364 - 1737345 - T 100 -12.2 -6.11243 | opp_overlap 1737345 ATCGAATAAAAAAAA TGCCAGTC AATC GACTGGCA TTTTTGTATCTATGA TERM 1957 1737345 - 1737364 + T 100 -12.2 -5.07275 | opp_overlap 1737345 ATCGAATAAAAAAAA TGCCAGTC AATC GACTGGCA TTTTTGTATCTATGA VFMJ11_1631 1738394 - 1737414 - | Sel1 repeat family protein VFMJ11_1632 1738679 - 1741036 + | hypothetical protein VFMJ11_1633 1741038 - 1741913 + | transporter TERM 1958 1741925 - 1741952 + F 80 -9.2 -3.56346 | opp_overlap 1741927, overlap 1741923 1741927 ATAGTTCTTCAATCA AAGGTAGCATGA TTAT TCGTGCTACCTA TCTCTTTTCTCTTCT TERM 1959 1741927 - 1741950 + F 89 -11.8 -3.33336 | opp_overlap 1741927, overlap 1741925 1741923 AGTTCTTCAATCAAA GGTAGCATGA TTAT TCGTGCTACC TATCTCTTTTCTCTT TERM 1960 1741950 - 1741927 - f 87 -9.6 -3.90291 | opp_overlap 1741927 1741925 1741923 AGTTCTTCAATCAAA GGTAGCATGA TTAT TCGTGCTACC TATCTCTTTTCTCTT VFMJ11_1634 1742052 - 1742747 + | suppressor/enhancer of lin-12 TERM 1961 1742806 - 1742778 - T 100 -21.9 -4.18421 | opp_overlap 1742778 TAAGCAGACAAACAA GGCCACATCAGTG ATT CACTGATGTGGCC TTTTGAATTATCGTT TERM 1962 1742778 - 1742806 + T 100 -21.9 -4.33754 | opp_overlap 1742778 TAAGCAGACAAACAA GGCCACATCAGTG ATT CACTGATGTGGCC TTTTGAATTATCGTT VFMJ11_1635 1744286 - 1742814 - | phosphohydrolase TERM 1963 1742999 - 1743011 + g 76 -3.5 -5.2853 | TCAATACAATGGTTA TTAAT GCA ATTAA TTTTATTTTTCCATC TERM 1964 1744083 - 1744101 + g 77 -9.6 -3.56226 | overlap 1744081 TCTTTCTGCTGCCTC TTGAGGTG TTT CACCTCGA TCTTTATCAATGGTT VFMJ11_1636 1744770 - 1744294 - | acetyltransferase TERM 1965 1744621 - 1744634 + g 74 -5.3 -4.79752 | TTCAGGGTCGTCTAA GTATC GAGC GATAC TTTTCTCTTCTTCAA TERM 1966 1744847 - 1744828 - R 100 -7.8 -6.25578 | opp_overlap 1744828 ACTAAACAAAAAAAA GGCTCGGA ATAA TCAGAGCC TTGAATCATTGAGGT VFMJ11_1637 1746205 - 1744886 - | long-chain fatty acid transport protein TERM 1967 1745416 - 1745385 - G 77 -9.6 -3.55444 | gap 1, opp_overlap 1745385 TTTTTACCTGTTAAA GCAGAAGGTG-CATA ATA TACATCACCTTCTGC TTCTATTTCAGGGCT TERM 1968 1745385 - 1745416 + g 73 -8.2 -3.81755 | gap 1, opp_overlap 1745385 TTTTTACCTGTTAAA GCAGAAGGTGCAT AATATAC AT-CACCTTCTGC TTCTATTTCAGGGCT VFMJ11_1638 1746368 - 1746481 + | hypothetical protein VFMJ11_1639 1746605 - 1747279 + | phosphatidylglycerophosphatase B VFMJ11_1640 1748157 - 1747276 - | transcriptional regulator TERM 1969 1747368 - 1747398 + g 93 -7.7 -5.39721 | AATATTCAATAGGAA GTCGTAGTGATTG ATCAC CAATTATTGCGAC TTTTTTCTGTGCTAA TERM 1970 1747520 - 1747506 - G 73 -2.1 -5.1861 | gap 1, opp_overlap 1747507, overlap 1747508 TTGATGACGAAAAAA TAGGCG TTAG CGCC-A CTTTCTCTCTTATAA TERM 1971 1747519 - 1747508 - G 76 -7.2 -4.22314 | opp_overlap 1747507, overlap 1747506 GATGACGAAAAAATA GGCG TTAG CGCC ACTTTCTCTCTTATA VFMJ11_1641 1748543 - 1749787 + | anaerobic C4-dicarboxylate transporter DcuA VFMJ11_1642 1749829 - 1750539 + | aspartate racemase VFMJ11_1643 1750985 - 1750536 - | cytochrome c-type biogenesis protein CcmH VFMJ11_1644 1751512 - 1750985 - | thiol:disulfide interchange protein TlpA ccmF_1 1753395 - 1751509 - | cytochrome c-type biogenesis protein CcmF TERM 1972 1753460 - 1753423 - R 100 -14.3 -4.52857 | overlap 1753457 ATTTTTCACATAAAA GCCATGCTTATGCTCAT AATT ATTGGCATAAGCATGGC ATTACCACATTATAC nrfD 1754426 - 1753470 - | cytochrome c nitrite reductase, NrfD subunit nrfC 1755114 - 1754428 - | cytochrome c nitrite reductase, Fe-S protein nrfB 1755709 - 1755116 - | cytochrome c nitrite reductase, pentaheme subunit TERM 1973 1755969 - 1755955 - H 81 -5.8 -4.90778 | overlap 1755961 1755962 GTTATTTAAAGAAAA TAAGAA TCA TTCTTA ATAAGAACGCTCAAA nrfA 1756178 - 1757614 + | nitrite reductase (cytochrome; ammonia-forming) TERM 1974 1757674 - 1757645 - T 89 -9.4 -4.26202 | opp_overlap 1757651, overlap 1757651 ACAGGTAGTAATAAA TAAAAAGCCGAC AGTTAA GTCGGCTTTTTT ATGTTTCTTATTTAT TERM 1975 1757651 - 1757668 + T 93 -8.4 -5.61913 | opp_overlap 1757645 1757651 AGTAATAAATAAAAA GCCGAC AGTTAA GTCGGC TTTTTTATGTTTCTT TERM 1976 1757668 - 1757651 - T 93 -8.4 -5.48514 | opp_overlap 1757651, overlap 1757645 AGTAATAAATAAAAA GCCGAC AGTTAA GTCGGC TTTTTTATGTTTCTT VFMJ11_1650 1758343 - 1757708 - | cytochrome c-type biogenesis protein CcmI VFMJ11_1651 1758413 - 1758294 - | hypothetical protein TERM 1977 1758473 - 1758455 - R 91 -4.6 -5.88197 | opp_overlap 1758455 CCAAACATAAAAAAA GCTTCT TGATCAC AGAAGC TTTAAATTATTTCGC VFMJ11_1652 1759279 - 1758506 - | phospholipase A1 VFMJ11_1653 1761718 - 1759376 - | ATP-dependent helicase HrpA TERM 1978 1763188 - 1763198 + G 73 -8.2 -3.83409 | opp_overlap 1763155 AAGCGCTAGTCGCAA CGGG AAG CCCG TTTGATCCTGTATCA VFMJ11_1654 1761873 - 1763561 + | NAD-dependent malic enzyme TERM 1979 1763585 - 1763605 + F 100 -12.7 -5.82388 | opp_overlap 1763569 1763585 TGATTTCACTATAAA CCAGAGTAA TTA TTACTCTGG TTTTTTTTCAACTTT TERM 1980 1763605 - 1763585 - f 100 -12.7 -3.9712 | opp_overlap 1763585, overlap 1763569 TGATTTCACTATAAA CCAGAGTAA TTA TTACTCTGG TTTTTTTTCAACTTT TERM 1981 1763792 - 1763802 + G 86 -8.2 -5.00616 | GGCGATATTAACCGT GCCC TAA GGGC TTTTTTAGCAGGAAA VFMJ11_1655 1763672 - 1764004 + | hypothetical protein VFMJ11_1656 1764079 - 1764708 + | SanA protein TERM 1982 1764731 - 1764763 + T 85 -9.3 -3.98683 | opp_overlap 1764737, overlap 1764737 GAACCCATTAGATAT AAAAAACCCTAGC CTCATTA GCTAGGGTTTTTA TTTAATTCATATAAT TERM 1983 1764737 - 1764757 + T 90 -8.3 -5.38326 | opp_overlap 1764737, overlap 1764731 ATTAGATATAAAAAA CCCTAGC CTCATTA GCTAGGG TTTTTATTTAATTCA TERM 1984 1764757 - 1764737 - T 95 -9 -5.43414 | opp_overlap 1764731 1764737 ATTAGATATAAAAAA CCCTAGCC TCATT AGCTAGGG TTTTTATTTAATTCA VFMJ11_1657 1766096 - 1764765 - | sensory box/ggdef family protein TERM 1985 1765491 - 1765508 + g 72 -8.5 -3.52204 | overlap 1765499 TTCAATACTGTTTAT GGTCATT TCGA AATGACC TTCGTTTACACCTGA TERM 1986 1766353 - 1766368 + r 86 -10.4 -3.66784 | opp_overlap 1766353 GCAATCAATAAAAAA GCGCCT GTTT AGGCGC TTATCTTAAAGATGA TERM 1987 1766368 - 1766353 - R 100 -10.4 -5.5604 | opp_overlap 1766353 GCAATCAATAAAAAA GCGCCT GTTT AGGCGC TTATCTTAAAGATGA VFMJ11_1658 1767679 - 1766399 - | MltA-interacting MipA family protein TERM 1988 1766950 - 1766960 + g 81 -2.6 -5.66229 | CTCTCAAATAAGGTT TATT ACC AATA TTTTTTCTTGTTGGT VFMJ11_1659 1767880 - 1768248 + | hypothetical protein TERM 1989 1768238 - 1768256 + T 100 -8.9 -6.10295 | opp_overlap 1768238 TAGAAAATAAAAAAA TAGGCGT ATAAC ACGCCTA TTTTTTTTATCTTAA TERM 1990 1768256 - 1768238 - T 100 -9.6 -6.14618 | opp_overlap 1768238 TAGAAAATAAAAAAA TAGGCGTA TAA CACGCCTA TTTTTTTTATCTTAA VFMJ11_1660 1769123 - 1768281 - | ABC-type cobalt transport system, permease component VFMJ11_1661 1770822 - 1769113 - | ABC-type cobalt transport system, ATP-binding protein TERM 1991 1770710 - 1770727 + g 71 -6.3 -4.21098 | TTGCCGCTTCCACTT GGTCCTA TAAT TAGGATC TTTTCACCTTGCTCT VFMJ11_1662 1771377 - 1770826 - | NADH-ubiquinone oxidoreductase TERM 1992 1771484 - 1771524 + r 91 -4.1 -5.89921 | opp_overlap 1771495, overlap 1771495 CGGCTGTATGTTTTT TATATAAAAAAGCTCACTA TAA TAGTGAGCTTTAAATTATA TTTTTTTGTTATCGT TERM 1993 1771495 - 1771513 + r 91 -11.8 -3.8802 | opp_overlap 1771495, overlap 1771484 TTTTTATATAAAAAA GCTCACTA TAA TAGTGAGC TTTAAATTATATTTT TERM 1994 1771513 - 1771495 - R 100 -11.8 -5.36441 | opp_overlap 1771495 1771484 TTTTTATATAAAAAA GCTCACTA TAA TAGTGAGC TTTAAATTATATTTT VFMJ11_1663 1773704 - 1771533 - | lipoprotein, putative TERM 1995 1773989 - 1773956 - RH 87 -12.7 -3.14211 | opp_overlap 1773962 1773963, overlap 1773963 ACGCTTTTGCAGGAA TAAAAAAGCTCATCA TTTC TGATGAGCCTTCTTA AAAGATGGTGCCCCG TERM 1996 1773982 - 1773963 - RH 100 -10.8 -5.5112 | opp_overlap 1773963 1773962, overlap 1773956 TGCAGGAATAAAAAA GCTCATCA TTTC TGATGAGC CTTCTTAAAAGATGG TERM 1997 1773963 - 1773982 + rH 81 -10.8 -2.77344 | opp_overlap 1773956 1773963, overlap 1773962 TGCAGGAATAAAAAA GCTCATCA TTTC TGATGAGC CTTCTTAAAAGATGG TERM 1998 1774036 - 1774056 + rH 79 -10.5 -2.89742 | overlap 1774039 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 1999 1774039 - 1774053 + rH 77 -8.6 -3.5947 | overlap 1774036 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2000 1774512 - 1774532 + rH 79 -10.5 -2.89742 | overlap 1774515 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2001 1774515 - 1774529 + rH 77 -8.6 -3.5947 | overlap 1774512 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT VFMJ11_1671 1775871 - 1774927 - | ribosomal large subunit pseudouridine synthase F TERM 2002 1775362 - 1775350 - GH 70 -3.3 -4.88293 | opp_overlap 1775350 AATTCGAAAAACAAA GCGAG ATT CTTGC TTAATCTTACATGGA TERM 2003 1775960 - 1775935 - gR 100 -14.1 -5.49234 | opp_overlap 1775935 ATATCCAATAAAAAA GCACCCTAAAC CAAT GCTTAGGGTGC TTTACTACAACGTAA TERM 2004 1775935 - 1775960 + Gr 91 -11.9 -3.73224 | opp_overlap 1775935 ATATCCAATAAAAAA GCACCCTAAAC CAAT GCTTAGGGTGC TTTACTACAACGTAA VFMJ11_1670 1775870 - 1775983 + | hypothetical protein VFMJ11_1672 1777429 - 1775984 - | lipoprotein, putative TERM 2005 1777577 - 1777557 - R 100 -15.5 -5.28778 | overlap 1777546 ATCAGGCATAAAAAA GCCGCTCAT AGT ATGAGCGGC CAAATCAAAAGTATT VFMJ11_1673 1778308 - 1777610 - | TorCAD operon transcriptional regulatory protein TorR VFMJ11_1674 1778546 - 1779193 + | chaperone protein TorD TERM 2006 1779343 - 1779357 + F 91 -5.6 -5.85011 | opp_overlap 1779343 1779338 GTATTGAAATGAAAA CCGCAT TTT ACGCGG TTTTTTTCATTTTTA TERM 2007 1779357 - 1779343 - f 82 -7.8 -4.56914 | opp_overlap 1779343, overlap 1779338 GTATTGAAATGAAAA CCGCAT TTT ACGCGG TTTTTTTCATTTTTA VFMJ11_1675 1779474 - 1780487 + | HTH-type transcriptional repressor PurR TERM 2008 1780534 - 1780505 - f 73 -8.7 -3.32844 | opp_overlap 1780502 1780499 1780511, overlap 1780511 TGCCTGACTTCATAA TAAAAACCATGCC AACG AGCATGGTTTTTT TATGCTTACTAAACT TERM 2009 1780528 - 1780511 - f 88 -7.7 -5.19328 | opp_overlap 1780502 1780499 1780511, overlap 1780505 ACTTCATAATAAAAA CCATGCC AACG AGCATGG TTTTTTTATGCTTAC TERM 2010 1780511 - 1780528 + F 93 -7 -5.71983 | opp_overlap 1780511 1780505, overlap 1780502 1780499 ACTTCATAATAAAAA CCATGC CAACGA GCATGG TTTTTTTATGCTTAC VFMJ11_1676 1780964 - 1781551 + | DNA transformation protein TfoX TERM 2011 1781579 - 1781615 + T 100 -17 -3.24747 | opp_overlap 1781597 TAGATTCATTTTTTA TTACGTTGTATTCTAT AATGC ATAGAATACAACGTAA TTACTACTATCAGCC VFMJ11_1677 1782368 - 1781631 - | hypothetical protein VFMJ11_1678 1782477 - 1782779 + | O6-methylguanine-DNA methyltransferase TERM 2012 1782801 - 1782755 - T 95 -12.6 -3.8046 | opp_overlap 1782761 1782765, overlap 1782756 TGGAAAAATTCTAAA TTTCAAGCAAGTAATAATGCAA TAA TAGCACTATTACTTGCTTAAAT AGATCGATTACTGAC TERM 2013 1782800 - 1782756 - T 100 -16.1 -2.87553 | opp_overlap 1782761 1782765, overlap 1782755 GGAAAAATTCTAAAT TTCAAGCAAGTAATAATGCAA TAA TAGCACTATTACTTGCTTAAA TAGATCGATTACTGA TERM 2014 1782761 - 1782795 + T 84 -11.6 -3.08312 | opp_overlap 1782756 1782755, overlap 1782765 AATTCTAAATTTCAA GCAAGTAATAATGCAA TAA TAGCACTATTACTTGC TTAAATAGATCGATT VFMJ11_1679 1783264 - 1782809 - | glycoprotein/polysaccharide metabolism TERM 2015 1784249 - 1784276 + G 73 -8.6 -3.70412 | gap 1 TCACTCAATGTGGTT CCAT-CGTCCATT TAA AATGGATGAATGG TTGCTTTATTCAATT tesB 1783545 - 1784408 + | acyl-CoA thioesterase II TERM 2016 1784427 - 1784453 + T 93 -9.4 -4.48299 | overlap 1784429 TTCTTTCTTTTTCTA TCGGTCAGGCTA TCG TTGCCTGACCTA TTTATTTGAATGTAA TERM 2017 1784429 - 1784451 + T 91 -12 -3.84346 | overlap 1784427 CTTTCTTTTTCTATC GGTCAGGCTA TCG TTGCCTGACC TATTTATTTGAATGT VFMJ11_1681 1784938 - 1784471 - | glutamate uptake regulatory protein TERM 2018 1784952 - 1784966 + H 77 -5.8 -4.65078 | ATAAAAACCTCACTG TAGAAA ATT TTTCTA TTTTATTGCCAATAT VFMJ11_1682 1785058 - 1786122 + | cysteine synthase TERM 2019 1786202 - 1786184 - f 77 -8.8 -3.67976 | opp_overlap 1786184 GGTATTAACCGCAAA GCCATCGA TTA TCGGTGGC TTTTTTATTACAATA TERM 2020 1786184 - 1786202 + F 100 -11 -5.46657 | opp_overlap 1786184 GGTATTAACCGCAAA GCCATCGA TTA TCGGTGGC TTTTTTATTACAATA VFMJ11_1683 1786252 - 1786935 + | ExsB protein TERM 2021 1786995 - 1786960 - T 100 -11.3 -4.42386 | opp_overlap 1786960 1786966 TCTCTATTTAGAAAA TAATAAGGCCACCAC GATTAA GTGATGGCCTTTTTA TTTACTTAAAAACCA TERM 2022 1786960 - 1786995 + T 85 -9.1 -3.90112 | opp_overlap 1786960, overlap 1786966 TCTCTATTTAGAAAA TAATAAGGCCACCAC GATTAA GTGATGGCCTTTTTA TTTACTTAAAAACCA TERM 2023 1786966 - 1786989 + T 90 -8.1 -5.38326 | opp_overlap 1786960, overlap 1786960 TTTAGAAAATAATAA GGCCACCAC GATTAA GTGATGGCC TTTTTATTTACTTAA VFMJ11_1684 1790124 - 1787014 - | acriflavin resistance protein TERM 2024 1787222 - 1787169 - G 85 -7.6 -4.97158 | gap 1 CCATACCAAAGAAAA TGACCGTACCAACCGCTACTCGGCT TTCAT AGCC-AGCACCTGTTGATACAATCA ATGGAATCGCACCAG VFMJ11_1685 1791173 - 1790127 - | periplasmic component of efflux system TERM 2025 1792439 - 1792418 - H 78 -7.3 -4.28977 | opp_overlap 1792418 ATAAGAGATCGAAAA GCCAATTCA GAAA TGAGTTGGC TTTTTTTGTGCCTGT TERM 2026 1792418 - 1792439 + H 100 -9.5 -5.65177 | opp_overlap 1792418 ATAAGAGATCGAAAA GCCAATTCA GAAA TGAGTTGGC TTTTTTTGTGCCTGT TERM 2027 1792532 - 1792563 + H 77 -6 -4.70169 | opp_overlap 1792537 1792540, overlap 1792537 1792540 TTAAATACCCCTTGC CAAAATAACTGTAT AAAT ATACAGTTACTCTG TTTTATTAAATATAG TERM 2028 1792558 - 1792537 - H 82 -8.9 -4.07885 | opp_overlap 1792532 1792537 1792540, overlap 1792540 TACCCCTTGCCAAAA TAACTGTAT AAAT ATACAGTTA CTCTGTTTTATTAAA xth 1792880 - 1793686 + | exodeoxyribonuclease III TERM 2029 1793695 - 1793716 + F 100 -11.6 -5.252 | opp_overlap 1793692 CAAATAATATATTTA GCCCTCAC CTATTT GTGAGGGC TTTTTTATCCCAATC grxB 1793761 - 1794411 + | glutaredoxin, GrxB family TERM 2030 1794466 - 1794432 - T 90 -11.1 -3.82378 | gap 1, opp_overlap 1794434 1794440, overlap 1794422 1794440 ATCTATTTATAACAA TAA-AAAAAGAGCACA TTAA TGTGCTCTTTTTCTTA TCAAAATCATGAAAA TERM 2031 1794434 - 1794463 + T 86 -10.9 -3.31792 | opp_overlap 1794422 1794432 1794440, overlap 1794440 CTATTTATAACAATA AAAAAAGAGCACA TTAA TGTGCTCTTTTTC TTATCAAAATCATGA TERM 2032 1794440 - 1794457 + T 100 -9.9 -5.18726 | opp_overlap 1794432 1794440, overlap 1794434 ATAACAATAAAAAAA GAGCACA TTAA TGTGCTC TTTTTCTTATCAAAA TERM 2033 1794457 - 1794440 - T 100 -9.9 -5.97979 | opp_overlap 1794440 1794434, overlap 1794432 ATAACAATAAAAAAA GAGCACA TTAA TGTGCTC TTTTTCTTATCAAAA VFMJ11_1694 1794595 - 1794473 - | hypothetical protein VFMJ11_1695 1795419 - 1794742 - | octopine transport system permease protein OccM VFMJ11_1696 1796162 - 1795422 - | membrane protein VFMJ11_1697 1797065 - 1796289 - | lysine-arginine-ornithine-binding periplasmic protein VFMJ11_1698 1797909 - 1797139 - | ATP-binding protein VFMJ11_1699 1798524 - 1800032 + | integral membrane protein TERM 2034 1800060 - 1800082 + F 100 -9.2 -5.06414 | ACGTATAATACTTAT GGGGTAAC CAAAAAT GTTACCCC TTTTTATTAAAAAAA TERM 2035 1802176 - 1802162 - g 80 -6.4 -4.66987 | TATACGGTAAGAAAA CTGGTA ATA CACCAG ATGGTCGTCAAGCAG pflB_1 1800319 - 1802595 + | formate acetyltransferase TERM 2036 1802621 - 1802641 + F 100 -11.1 -5.5074 | opp_overlap 1802621 ATTAAGTAGAATTAA GCCCTGCCA TTT TGGTGGGGC TTTTTTATTGCCTTA pflA 1802755 - 1803492 + | pyruvate formate-lyase 1-activating enzyme TERM 2037 1803523 - 1803539 + F 100 -12.3 -5.06414 | opp_overlap 1803523 TTTAAGCAACACAAA TGCCCGA TCT TCGGGCA TTTTTATTGGAAAAA TERM 2038 1803539 - 1803523 - f 100 -12.3 -4.2772 | opp_overlap 1803523 TTTAAGCAACACAAA TGCCCGA TCT TCGGGCA TTTTTATTGGAAAAA TERM 2039 1804315 - 1804297 - g 80 -4.6 -5.25772 | overlap 1804291 AAATCACAACAAAAA GCTTTGAA GAC TTAAAAGC CATGATGTTAAGTGC TERM 2040 1804509 - 1804533 + G 70 -2.9 -5.15167 | opp_overlap 1804509 1804512, overlap 1804512 TTTTACCATGAAGTA GAATCATGT GAAGAAA ACATGACTC TTTTTATTGATGGTG VFMJ11_1702 1803558 - 1804706 + | cupin family protein TERM 2041 1804742 - 1804718 - T 93 -7.2 -5.65177 | ATAGCTACAAAAAAA GCGCGATA TAAATTGCC TATCGCGC TTAAGCCTGTCACAG TERM 2042 1804743 - 1804763 + T 75 -8.3 -3.7175 | overlap 1804747 AATTGCCTATCGCGC TTAAGCCTG TCA CAGGCTGAA TTTAAATACATTTTT TERM 2043 1804747 - 1804759 + T 72 -9.1 -2.66451 | overlap 1804743 GCCTATCGCGCTTAA GCCTG TCA CAGGC TGAATTTAAATACAT TERM 2044 1804783 - 1804805 + T 100 -9.2 -5.12068 | opp_overlap 1804787 AATACATTTTTTTAA CCCATCATAA ATA TCATGATGGG TTTTTATTAGATATC VFMJ11_1703 1805807 - 1804812 - | oligopeptide transport ATP-binding protein OppF VFMJ11_1704 1806772 - 1805807 - | oligopeptide transport ATP-binding protein OppD VFMJ11_1705 1807725 - 1806823 - | oligopeptide transport system permease protein OppC VFMJ11_1706 1808660 - 1807740 - | oligopeptide transport system permease protein OppB TERM 2045 1808621 - 1808609 - G 77 -7.7 -4.27192 | opp_overlap 1808608 AAATGGTGATCAAAA CCAAC ATT GTTGG AATTGCTTCAAGTAT TERM 2046 1808707 - 1808738 + r 100 -9.4 -5.4588 | overlap 1808708 TTAAAAGATGGATCT AGCCACTACACGCG ATCC TGCGTGTAGTGACA TTTTTTATAATTTTA TERM 2047 1808708 - 1808737 + r 95 -12.9 -3.85088 | overlap 1808707 TAAAAGATGGATCTA GCCACTACACGCG ATCC TGCGTGTAGTGAC ATTTTTTATAATTTT VFMJ11_1707 1810430 - 1808766 - | periplasmic oligopeptide-binding protein TERM 2048 1809526 - 1809542 + g 71 -5.1 -4.52873 | opp_overlap 1809526 1809524 AAGCTACCTACAACA GAAACTG AAT CAGGTTC TTCTTTTTGTAGACG TERM 2049 1813398 - 1813420 + G 70 -8.4 -3.4072 | opp_overlap 1813398 1813400, overlap 1813402 GTTACTGTACTTAAA GATGCTGGTG AGC CACCAGTAAC TTGTGATAACGCATG TERM 2050 1813402 - 1813416 + G 72 -10 -2.61548 | opp_overlap 1813400 1813398, overlap 1813398 CTGTACTTAAAGATG CTGGTG AGC CACCAG TAACTTGTGATAACG VFMJ11_1708 1811046 - 1813583 + | chitinase A TERM 2051 1813606 - 1813633 + T 100 -12.9 -4.64861 | opp_overlap 1813584 1813606 ATTTAAAAATAAAAA GACCAAGTTCA TTTATC TGAACTTGGTC TTTCTTTTCAAACCG TERM 2052 1813633 - 1813606 - T 100 -12.9 -5.63236 | opp_overlap 1813606, overlap 1813584 ATTTAAAAATAAAAA GACCAAGTTCA TTTATC TGAACTTGGTC TTTCTTTTCAAACCG tdk 1814248 - 1813670 - | thymidine kinase TERM 2053 1814041 - 1814052 + g 72 -4.4 -4.67607 | ACTCTTTAATTGCAT CGAA TACA TTCG TTTCTTTATTAAACA TERM 2054 1814255 - 1814235 - G 81 -5.5 -5.16841 | opp_overlap 1814237 1814239, overlap 1814237 GCAGAGTAATAAAAA TACATTTGT GCC ACAAATGTG TCCTCTATTAAAGTT TERM 2055 1814253 - 1814237 - G 77 -8.1 -4.20491 | opp_overlap 1814237 1814239, overlap 1814235 AGAGTAATAAAAATA CATTTGT GCC ACAAATG TGTCCTCTATTAAAG TERM 2056 1814292 - 1814308 + r 74 -9.4 -3.02202 | opp_overlap 1814292, overlap 1814291 TTTGGTAATAAAAAA GGCTGG AAATA CCAGCC CTTTATATAAAACTG TERM 2057 1814308 - 1814292 - R 100 -9.4 -5.4505 | opp_overlap 1814291 1814292 TTTGGTAATAAAAAA GGCTGG AAATA CCAGCC CTTTATATAAAACTG cysS 1815712 - 1814330 - | cysteinyl-tRNA synthetase TERM 2058 1814573 - 1814591 + g 76 -6.8 -4.4267 | opp_overlap 1814565 1814573 CATCAAAGCACCTAA TTTAGACG CAG TGTCTAAA TTTTCAGTTTTAAGA TERM 2059 1815937 - 1815921 - g 71 -6.5 -4.23674 | opp_overlap 1815921 CTTCACGAAGACAAA GCACCAG CAA CTTGTGC TAACTTCCTACAATA VFMJ11_1711 1815864 - 1816361 + | peptidyl-prolyl cis-trans isomerase B TERM 2060 1816354 - 1816366 + F 87 -6.3 -5.41746 | opp_overlap 1816354 CAGGCACAACAATCA CAGAA TAA TTCTG TTTTTTTGCCAGCTT TERM 2061 1816373 - 1816396 + F 100 -11.8 -4.5442 | ATAATTCTGTTTTTT TGCCAGCTTT ATTC GAAGCTGGCA TTTTCTCATTACCAA lpxH 1816422 - 1817147 + | UDP-2,3-diacylglucosamine hydrolase VFMJ11_1713 1817261 - 1818463 + | sensory box/ggdef family protein VFMJ11_1714 1818476 - 1818874 + | protein translocase subunit SecA TERM 2062 1818889 - 1818906 + T 100 -11.3 -5.80951 | opp_overlap 1818889 AAAGACATAAAAAAA CGAGAGC CTTT GCTCTCG TTTTTTATTTTCAAT TERM 2063 1818906 - 1818889 - T 100 -11.3 -5.82281 | opp_overlap 1818889 AAAGACATAAAAAAA CGAGAGC CTTT GCTCTCG TTTTTTATTTTCAAT TERM 2064 1818921 - 1818941 + T 76 -4.1 -5.1615 | overlap 1818923 GTTTTTTATTTTCAA TGCTAATTT CTT AAATTAGAA TTTTTTCGATATTAA VFMJ11_1715 1820306 - 1818936 - | Na+-dependent transporter, SNF family VFMJ11_1716 1820667 - 1822121 + | cardiolipin synthetase TERM 2065 1822166 - 1822139 - T 86 -5.7 -5.62045 | gap 1, opp_overlap 1822139 ACACATAAGAAAAAA CCAGTGA-CTTC TTTAC AAAGATCACTGG CTTTTTAATGTTTAC folE 1822866 - 1822213 - | GTP cyclohydrolase I TERM 2066 1824086 - 1824059 - g 70 -2.6 -5.08824 | opp_overlap 1824076 TCTGCATTTAAAAAA CACCCTGGCCGT ACTG ACTACCAACGTG GCATTTATTCTATTA VFMJ11_1718 1823021 - 1824265 + | molybdopterin biosynthesis protein MoeA moeB 1824276 - 1825025 + | molybdopterin synthase sulfurylase MoeB TERM 2067 1825051 - 1825078 + F 75 -4.9 -4.89567 | gap 1, opp_overlap 1825051 AATTATTTATTTAAA GGCGGTAAACCT ATTAA AAGT-TACCGCC TTTTCTATTTTCAAA VFMJ11_1720 1825283 - 1826104 + | phosphate-binding protein TERM 2068 1826117 - 1826140 + F 100 -9.6 -4.81249 | TAATTTCTACCCTAT TGCCTGACCT GCGA AGGTTGGGCA TTTTTCCATTTCGAA pstC 1826180 - 1827106 + | phosphate ABC transporter, permease protein PstC TERM 2069 1827190 - 1827200 + G 70 -5.4 -4.34267 | overlap 1827178 CAGCTGCAATTACTG TAGG TTT CCTA TTTTGGATTATCTGG pstA 1827111 - 1827968 + | phosphate ABC transporter, permease protein PstA pstB_1 1828033 - 1828782 + | phosphate ABC transporter, ATP-binding protein TERM 2070 1828821 - 1828838 + T 93 -8.4 -5.5604 | GCGATGGAAACTCTT GCCCCT CTAGTT AGGGGC TTTTTTGTTACTTAA VFMJ11_1724 1830238 - 1829060 - | response regulator receiver protein, putative VFMJ11_1725 1830701 - 1830246 - | hypothetical protein TERM 2071 1830399 - 1830433 + g 80 -4.5 -5.20333 | opp_overlap 1830399 GTCATCAGTAAGTGA TTGATACTGAGTT AGAAATATA AACTCAATATCAA TTTTTCTTCTAACTA VFMJ11_1726 1834093 - 1830698 - | hypothetical protein TERM 2072 1834498 - 1834523 + r 83 -8.2 -4.27796 | overlap 1834499 TTCGCTTGCGTTCCT CGCCGAGGGG GTCACA CTCCTCGGCA TTTTCGGCTTTGTTC TERM 2073 1834499 - 1834522 + r 87 -11.7 -3.15593 | overlap 1834498 TCGCTTGCGTTCCTC GCCGAGGGG GTCACA CTCCTCGGC ATTTTCGGCTTTGTT VFMJ11_1727 1834906 - 1834541 - | hypothetical protein VFMJ11_1728 1835789 - 1834962 - | hypothetical protein VFMJ11_1729 1836060 - 1836650 + | hypothetical protein TERM 2074 1836742 - 1836700 - f 85 -8.6 -4.1899 | opp_overlap 1836705, overlap 1836703 TCATTCCATTTAAAA TATGAGTACACTTGTTTCAA TTA TTACAACAGGTGTACTCCTA TGAAAATACAATCTA TERM 2075 1836739 - 1836703 - f 79 -10.3 -2.81208 | opp_overlap 1836705, overlap 1836700 TTCCATTTAAAATAT GAGTACACTTGTTTCAA TTA TTACAACAGGTGTACTC CTATGAAAATACAAT VFMJ11_1730 1836742 - 1837371 + | protein VV2_0960 TERM 2076 1837439 - 1837468 + G 80 -10.9 -3.43217 | overlap 1837433 TAATCGAACTCGTTA TTGCGATTACTGT TGCG GCAGTAATTGCAA TTATCGCTATTCCTA VFMJ11_1731 1837396 - 1837956 + | prokaryotic N- methylation motif domain protein TERM 2077 1837983 - 1837962 - T 100 -11.7 -5.64274 | opp_overlap 1837962 GCATTTATAAAAAAA GGCTTATCA ACAA TGATAAGCC TTTCATTCTTATAGT TERM 2078 1837962 - 1837983 + T 100 -11.7 -4.12267 | opp_overlap 1837962 GCATTTATAAAAAAA GGCTTATCA ACAA TGATAAGCC TTTCATTCTTATAGT VFMJ11_1732 1839644 - 1838004 - | methyl-accepting chemotaxis protein TERM 2079 1839610 - 1839584 - G 72 -3.1 -5.02606 | opp_overlap 1839587, overlap 1839587 CACTAAATAATAAAA CAATAGCAATA ATCGG CATTGCTATTT TGTAACTGATTGATA TERM 2080 1839607 - 1839587 - G 71 -4.8 -4.57912 | opp_overlap 1839587, overlap 1839584 TAAATAATAAAACAA TAGCAATA ATCGG CATTGCTA TTTTGTAACTGATTG TERM 2081 1839800 - 1839790 - R 77 -3.2 -5.47218 | overlap 1839798 TCCTATTCAAAAAAA GCAC CCA ATGC CAAAATAGCAGCGCC torS 1842653 - 1839777 - | tmao reductase sytem sensor tors TERM 2082 1841216 - 1841200 - G 79 -10.1 -3.55444 | TGTTGAGCCGTTAAA CCGCTCC CAC GGAGCAG CTCACCGGTTCCAAG torT 1842727 - 1843725 + | tmao reductase system periplasmic protein tort mgsA 1843822 - 1844277 + | methylglyoxal synthase TERM 2083 1844285 - 1844317 + T 81 -9.3 -3.86975 | opp_overlap 1844290, overlap 1844290 GCGTTTAGCTAAATA AAAAATAGCCGCT ATTTTCA AGCGGCTATTTTA TTGTCTTTAAGTTAT TERM 2084 1844312 - 1844290 - T 100 -9.2 -5.65927 | opp_overlap 1844285 1844290 TAGCTAAATAAAAAA TAGCCGCT ATTTTCA AGCGGCTA TTTTATTGTCTTTAA TERM 2085 1844290 - 1844312 + T 100 -9.2 -4.95302 | opp_overlap 1844290, overlap 1844285 TAGCTAAATAAAAAA TAGCCGCT ATTTTCA AGCGGCTA TTTTATTGTCTTTAA VFMJ11_1736 1846392 - 1844329 - | helicase IV yccS 1846586 - 1848769 + | hypothetical membrane protein TERM 2086 1848848 - 1848867 + F 75 -8.6 -3.34895 | opp_overlap 1848847 1848848 ACACTATTATTAAAG GGAGTTCA TATT TGGACTCC TTAATTACCAATAAA VFMJ11_1738 1848899 - 1849396 + | glycine cleavage system regulatory protein TERM 2087 1849422 - 1849443 + T 79 -8.7 -3.81062 | opp_overlap 1849422 CGCAAACGTAAAAAA GCCCGTTCA TTTC TGAAGGGGC TTTCCAGTTTTTGGT TERM 2088 1849443 - 1849422 - T 95 -8.7 -5.22039 | opp_overlap 1849422 CGCAAACGTAAAAAA GCCCGTTCA TTTC TGAAGGGGC TTTCCAGTTTTTGGT TERM 2089 1849624 - 1849603 - T 95 -8.7 -5.22039 | opp_overlap 1849603 CGCAAACGTAAAAAA GCCCGTTCA TCTC TGAAGGGGC TTTCCAGTTTTTGGT TERM 2090 1849603 - 1849624 + T 79 -8.7 -3.81062 | opp_overlap 1849603 CGCAAACGTAAAAAA GCCCGTTCA TCTC TGAAGGGGC TTTCCAGTTTTTGGT TERM 2091 1849783 - 1849804 + T 100 -14.5 -4.56978 | opp_overlap 1849783 CGCAAATGTAAAAAA GCCCGTTCA TTTC TGAACGGGC TTTCTTGTTTGGAGC TERM 2092 1849804 - 1849783 - T 100 -14.5 -5.22039 | opp_overlap 1849783 CGCAAATGTAAAAAA GCCCGTTCA TTTC TGAACGGGC TTTCTTGTTTGGAGC TERM 2093 1849964 - 1849984 + T 79 -10.5 -2.89742 | overlap 1849967 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2094 1849967 - 1849981 + T 77 -8.6 -3.5947 | overlap 1849964 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2095 1850236 - 1850256 + T 79 -10.5 -2.89742 | overlap 1850239 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCAATTCCA TERM 2096 1850239 - 1850253 + T 77 -8.6 -3.5947 | overlap 1850236 CAGCGCGAACGCCGA GGGATT TTA AATCCC TTGTGTCTACCAATT TERM 2097 1850823 - 1850808 - T 100 -9 -5.88197 | opp_overlap 1850808 TCAAATATAAAAAAA GCGAAC CTAA GTTCGC TTTTCAATTCATTTA TERM 2098 1850808 - 1850823 + T 89 -9 -4.33808 | opp_overlap 1850808 TCAAATATAAAAAAA GCGAAC CTAA GTTCGC TTTTCAATTCATTTA pgsA 1851396 - 1850842 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase uvrC 1853205 - 1851442 - | excinuclease ABC, C subunit TERM 2099 1853094 - 1853105 + g 75 -3 -5.252 | GATGAATATGGCTAA CTAA CGCC TTAG TTTTTTCTGAAGGTA TERM 2100 1853226 - 1853184 - G 76 -7.2 -4.15698 | gap 2, opp_overlap 1853181 1853184 1853186, overlap 1853181 TACCTACATAAATAA CGTCAGCCTCGGCGTTATAC ATTCG ATA-AACGCC-AGGCTGATG TGTTACAGATTTTAG VFMJ11_1747 1853912 - 1853268 - | response regulator UvrY TERM 2101 1853942 - 1853956 + r 71 -8.6 -3.10354 | TTTAATCTACAGCCA CCTCTA TAA TAGAGG TCTTAACTAACTGTC TERM 2102 1854013 - 1853999 - R 73 -4.3 -4.84582 | AAAAAATAGATAAAA GCATA TTGAT TATGC GTTAGGCCGCAAAGT VFMJ11_1748 1856435 - 1854090 - | DNA polymerase II TERM 2103 1854931 - 1854919 - G 83 -3.3 -5.55664 | CGATGATCAAAAAAA CGGCA CCC TGACG AACCTAGCACCCCAT VFMJ11_1749 1857240 - 1856464 - | hypothetical protein TERM 2104 1857327 - 1857310 - R 88 -6.2 -5.61689 | opp_overlap 1857310 AAAAGCAATAAAAAA CCGGCC ATTTAA AGCCGG TTTATTTTAAAATCT TERM 2105 1857310 - 1857327 + r 74 -5.5 -4.67651 | opp_overlap 1857310 AAAAGCAATAAAAAA CCGGC CATTTAAA GCCGG TTTATTTTAAAATCT VFMJ11_1750 1858935 - 1857349 - | Na+/H+ antiporter family protein TERM 2106 1857421 - 1857409 - G 80 -6.3 -4.67651 | overlap 1857405 1857414 1857417 ACACGCTAAAACAAA TGCAA CAC TTGCA CCAGCAAACGCCACC TERM 2107 1858959 - 1858945 - H 75 -8.6 -3.37796 | GTTCATGATCTACAA CAACCA GTC TGGTTG GAGATCTACTGCAGA TERM 2108 1859341 - 1859357 + H 91 -5.3 -5.9003 | opp_overlap 1859332 1859335 1859341, overlap 1859332 1859335 AATGAATATTATTAA TATTAAT ATC ATTAATA TTTTTTTATTCCTTT TERM 2109 1859721 - 1859711 - g 84 -2.4 -5.70761 | AAAACAAAACAAAAA CGTG CAC CTCG CCCTGCAAAATATAA VFMJ11_1751 1859444 - 1859848 + | H-NS histone family protein TERM 2110 1859902 - 1859867 - T 87 -13 -2.74192 | gap 1, opp_overlap 1859867 1859875, overlap 1859875 TACTCTTTAAGAGCA TATAAAAAGACCACTTA CTC TAAGTGGTCTTTTT-TA TTTTCATTTTATTAC TERM 2111 1859867 - 1859902 + T 100 -13 -4.78029 | gap 1, opp_overlap 1859867 1859875, overlap 1859875 TACTCTTTAAGAGCA TATAAAAAGACCACTTA CTC TAAGTGGTCTTTTT-TA TTTTCATTTTATTAC TERM 2112 1859895 - 1859875 - T 100 -12.7 -5.03405 | opp_overlap 1859867 1859875, overlap 1859867 AAGAGCATATAAAAA GACCACTTA CTC TAAGTGGTC TTTTTTATTTTCATT TERM 2113 1859875 - 1859895 + T 100 -12.7 -5.85244 | opp_overlap 1859875 1859867, overlap 1859867 AAGAGCATATAAAAA GACCACTTA CTC TAAGTGGTC TTTTTTATTTTCATT VFMJ11_1752 1860719 - 1860120 - | hypothetical outer membrane protein TERM 2114 1860983 - 1860999 + r 93 -9.4 -4.27467 | opp_overlap 1860983 TTAGATATAAAAAAA GCAGGC TAAAT GCCTGC TTTATTAAATTCTAA TERM 2115 1860999 - 1860983 - R 100 -9.4 -5.76633 | opp_overlap 1860983 TTAGATATAAAAAAA GCAGGC TAAAT GCCTGC TTTATTAAATTCTAA fadR 1861863 - 1861021 - | fatty acid metabolism transcriptional regulator FadR TERM 2116 1861642 - 1861620 - G 77 -7.8 -4.21275 | opp_overlap 1861620 1861622 TTAATGTATCTAAAA TATGTAAACC AGA GGTTTCCATA TAATTGTTCACTTTT TERM 2117 1863010 - 1862991 - g 71 -5 -4.5442 | opp_overlap 1863001 1863002 GGGCGAACCACAAAA CTTGATCA TTGC CGACCAAG CTGGTTGGATGTTTG nhaB 1862311 - 1863903 + | Na+/H+ antiporter NhaB TERM 2118 1863930 - 1863949 + F 88 -7.8 -4.96501 | opp_overlap 1863930, overlap 1863945 ACTTTTGATAGCAAA GGCTCTGT AGAT ACGGGGCC TTTATTTTTATAAGG VFMJ11_1755 1863972 - 1864481 + | oxido-reductase TERM 2119 1864498 - 1864479 - T 79 -3.6 -5.4505 | opp_overlap 1864493, overlap 1864482 TTCTTCAATAAAAAA TAATAGCA ATAT TGCTAATA GTAAAAAGCCACCAC TERM 2120 1864495 - 1864482 - T 74 -5.3 -4.81306 | opp_overlap 1864493, overlap 1864479 TTCAATAAAAAATAA TAGCA ATAT TGCTA ATAGTAAAAAGCCAC TERM 2121 1864493 - 1864548 + T 93 -13.8 -3.18452 | gap 1, opp_overlap 1864482 1864479 1864506, overlap 1864506 ATAATAGCAATATTG CTAATAGT-AAAAAGCCACCACTAATT TCG AATTAGTGATGGCTTTTTTATTTTTAG TGCTTTATTTACCAC TERM 2122 1864506 - 1864534 + T 100 -13.3 -5.95286 | opp_overlap 1864506, overlap 1864493 TGCTAATAGTAAAAA GCCACCACTAATT TCG AATTAGTGATGGC TTTTTTATTTTTAGT TERM 2123 1864534 - 1864506 - T 100 -15.5 -4.87626 | opp_overlap 1864493 1864506 TGCTAATAGTAAAAA GCCACCACTAATT TCG AATTAGTGATGGC TTTTTTATTTTTAGT VFMJ11_1756 1865167 - 1864553 - | SecA, C-motif domain protein VFMJ11_1757 1865302 - 1865826 + | hypothetical protein TERM 2124 1865876 - 1865851 - f 87 -11.2 -3.28712 | CCTTTCCCCCTACAA TCCCACCTCC AATAAA AGAGGTGGGA TATGCAAGTAATACT VFMJ11_1758 1865878 - 1866825 + | tRNA-dihydrouridine synthase C TERM 2125 1866862 - 1866886 + T 100 -9.4 -4.67556 | overlap 1866884 TCCCCGAACCAATGG CCGAGTTTAT GAGAA GTAAACTCGG TTTTTGCCGTCTTGT VFMJ11_1759 1868340 - 1866868 - | ggdef domain protein TERM 2126 1868433 - 1868409 - R 74 -5.8 -4.57073 | opp_overlap 1868409 TATTTCTTCCAAAAA TGTCAGTTTT AACAG ACAACTGACA TTTTCATAGGAATCA VFMJ11_1760 1869286 - 1868465 - | hypothetical protein VFMJ11_1761 1871336 - 1869366 - | DNA topoisomerase 3 TERM 2127 1870914 - 1870928 + g 79 -3.4 -5.46698 | ATCACTGATCAATAA GCGTTG AGT CGCCGC TTTTTTCGTTTTAGA TERM 2128 1871272 - 1871282 + g 73 -5.4 -4.58395 | GCAGCAATTGCTCTG CCAA GGC TTGG TTTTTCGGCAATAAA TERM 2129 1871341 - 1871316 - G 100 -10.6 -5.36441 | TCGTGACATAAAAAA TGCTGATGTT GTGAAT AACATCAGCA CTATACCTGTATGAA VFMJ11_1762 1873393 - 1871390 - | 2,4-dienoyl-coa reductase (nadph) sppA 1873612 - 1875468 + | signal peptide peptidase SppA, 67K type TERM 2130 1875480 - 1875497 + F 100 -12.7 -4.55295 | opp_overlap 1875471 TTAAAAGCATGACGA GCCCGAC ACAT GTCGGGC TTTCTTTATGCCAAA ansA 1875561 - 1876574 + | L-asparaginase TERM 2131 1876599 - 1876625 + T 100 -11.7 -5.32944 | gap 1, opp_overlap 1876599 ACGTAATACAAAAAA GGCTTCCC-TGA ATTC TCATGGGAAGCC TTTTTTAATTCTAGA TERM 2132 1876625 - 1876599 - T 100 -11.7 -5.48063 | gap 1, opp_overlap 1876599 ACGTAATACAAAAAA GGCTTCCC-TGA ATTC TCATGGGAAGCC TTTTTTAATTCTAGA TERM 2133 1876639 - 1876659 + T 79 -4.1 -5.26875 | CCTTTTTTAATTCTA GATAATTAA CCG TAAATTATC TTTTTTCGTTCAAAA asd_1 1877770 - 1876655 - | aspartate-semialdehyde dehydrogenase TERM 2134 1878930 - 1878950 + G 72 -9.1 -3.29461 | CTGTAATCCTTGCTT CTTCAATGT CTA ACGTTGAAG TTATGGAGCACATTA nhaC_2 1878395 - 1879831 + | Na+/H+ antiporter NhaC TERM 2135 1879880 - 1879859 - T 100 -13.1 -5.33405 | opp_overlap 1879859 CTCATTAAATAAAAA TGCCAGTGA TTGA TCACTGGCA TTTTTGTATCTAGCG TERM 2136 1879859 - 1879880 + T 100 -13.1 -5.03994 | opp_overlap 1879859 CTCATTAAATAAAAA TGCCAGTGA TTGA TCACTGGCA TTTTTGTATCTAGCG VFMJ11_1767 1881272 - 1880082 - | methyl-accepting chemotaxis protein TERM 2137 1880947 - 1880931 - G 72 -3.6 -5.00895 | overlap 1880932 TTCAGGAGAGAAAAA CTGCTC CATTT GTGCAG CAAATACCCAAGTAT VFMJ11_1768 1882472 - 1881414 - | nucleoid-associated protein NdpA VFMJ11_1769 1882511 - 1882738 + | hypothetical protein TERM 2138 1882745 - 1882731 - f 84 -6.4 -5.07011 | overlap 1882741 TAGATAAACCAAAAA CTCACT AAG AGCGAG AATTCACAGACCATG TERM 2139 1884103 - 1884090 - g 73 -6.7 -4.14739 | overlap 1884070 1884093 TTATCGACCTTAAAA CAGTC CCCT GACTG GGAAAAAACCATTGT VFMJ11_1770 1882758 - 1884566 + | sulfatase TERM 2140 1884599 - 1884621 + F 91 -4.9 -5.83822 | CAAGGATATTTCTAA TCCCTTC CTTAATTGT GAAGGGA TTTTTTTTACCTATA TERM 2141 1884978 - 1885017 + F 89 -13.8 -2.87931 | opp_overlap 1884983 1884987, overlap 1884980 1884987 CGTCCGCTCCGCCAA TACAACGAAGGCATTGTC GAAA GACGATGCCTTTTTTGTA TCTGTCGAAAATGAA TERM 2142 1884980 - 1885015 + F 85 -12 -2.9914 | opp_overlap 1884983 1884987, overlap 1884978 1884987 TCCGCTCCGCCAATA CAACGAAGGCATTGTC GAAA GACGATGCCTTTTTTG TATCTGTCGAAAATG TERM 2143 1884987 - 1885008 + F 100 -10.9 -5.4492 | opp_overlap 1884983 1884987, overlap 1884980 1884978 CGCCAATACAACGAA GGCATTGTC GAAA GACGATGCC TTTTTTGTATCTGTC TERM 2144 1885008 - 1884987 - f 77 -8.7 -3.54382 | opp_overlap 1884987 1884980 1884978, overlap 1884983 CGCCAATACAACGAA GGCATTGTC GAAA GACGATGCC TTTTTTGTATCTGTC TERM 2145 1885505 - 1885544 + F 89 -13.8 -2.87931 | opp_overlap 1885514, overlap 1885507 1885514 CGTCCGCTCCGCCAC TACAACGAAGCCTTGTCA GAAA TGACGAGGCTTTTTTGTA TCTGTCGAAAATGAA TERM 2146 1885507 - 1885542 + F 85 -12 -2.9914 | opp_overlap 1885514, overlap 1885505 1885514 TCCGCTCCGCCACTA CAACGAAGCCTTGTCA GAAA TGACGAGGCTTTTTTG TATCTGTCGAAAATG TERM 2147 1885535 - 1885514 - f 75 -8.7 -3.47322 | opp_overlap 1885514 1885507 1885505 CGCCACTACAACGAA GCCTTGTCA GAAA TGACGAGGC TTTTTTGTATCTGTC TERM 2148 1885514 - 1885535 + F 100 -10.9 -5.4492 | opp_overlap 1885514, overlap 1885507 1885505 CGCCACTACAACGAA GCCTTGTCA GAAA TGACGAGGC TTTTTTGTATCTGTC VFMJ11_1775 1885774 - 1886481 + | carbonic anhydrase (Carbonate dehydratase) TERM 2149 1886527 - 1886491 - f 100 -11.7 -4.53685 | AAATGATAACGAAAA TGCCGTAAATCCACACA AAA TGCTCGAATTTACGGCA AACAGTACTTAATTT TERM 2150 1886692 - 1886713 + F 100 -12.3 -4.8048 | TCCGCCACTTTCGAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATACGCA TERM 2151 1887078 - 1887099 + F 100 -12.3 -4.84527 | TCCGCCACTTTCGAA GCCCTAGCA GAAA TGCTGGGGC TTTTTCGTATCTGAC TERM 2152 1888109 - 1888121 + G 72 -3.3 -5.05601 | opp_overlap 1888107, overlap 1888111 ATTAGTAAACTTACA CCCGA AAA TCAGG TTTTTGTATATGATA VFMJ11_1778 1887545 - 1889431 + | toxin corregulated pilus biosynthesis protein I TERM 2153 1889482 - 1889461 - T 90 -10.9 -3.78449 | opp_overlap 1889461 AATAAGATATTTAAA GCCCTAACA GAGA TGCTAGGGC TTTTTTCTATGTGCG TERM 2154 1889461 - 1889482 + T 95 -8.7 -5.4251 | opp_overlap 1889461 AATAAGATATTTAAA GCCCTAACA GAGA TGCTAGGGC TTTTTTCTATGTGCG VFMJ11_1779 1890318 - 1889503 - | MTA/SAH nucleosidase TERM 2155 1890399 - 1890388 - R 76 -4.4 -5.19251 | opp_overlap 1890388 GAACACCAACAAAAA GCAA TCGT TTGC TATTTTATTTCATAC VFMJ11_1780 1890899 - 1890399 - | IAA acetyltransferase VFMJ11_1781 1891218 - 1893572 + | hypothetical protein VFMJ11_1782 1893574 - 1894455 + | transporter TERM 2156 1894491 - 1894470 - T 93 -5.9 -5.8901 | opp_overlap 1894470 ATAGAAAATAAAAAA GGTAGAG TTATTAGG CTCTACC TTTTTTTATTGAATG TERM 2157 1894470 - 1894491 + T 100 -7.3 -5.8187 | opp_overlap 1894470 ATAGAAAATAAAAAA GGTAGAGTT ATTA GGCTCTACC TTTTTTTATTGAATG VFMJ11_1783 1895356 - 1894517 - | oxidoreductase TERM 2158 1895779 - 1895757 - g 77 -6.4 -4.53303 | overlap 1895744 CACTGCCATACAAAA TATAGCAAAA ACG CTTTGCCATA CTCCTATAGATATTC VFMJ11_1784 1895560 - 1896252 + | short chain dehydrogenase VFMJ11_1785 1896540 - 1896241 - | hypothetical protein VFMJ11_1786 1896980 - 1896540 - | protein VV1_2014 VFMJ11_1787 1897103 - 1897354 + | Fe-S-cluster domain protein VFMJ11_1788 1897606 - 1897376 - | hypothetical protein TERM 2159 1897691 - 1897721 + r 84 -6.3 -5.19261 | gap 1, opp_overlap 1897693, overlap 1897693 ATCACACCTATAAAA AATCCCTATAG-GA TTAC TCACTATAGGGATA TTTTTTAATCAATTT TERM 2160 1897693 - 1897719 + r 85 -8.9 -4.2131 | gap 1, opp_overlap 1897693, overlap 1897691 CACACCTATAAAAAA TCCCTATAG-GA TTAC TCACTATAGGGA TATTTTTTAATCAAT TERM 2161 1897719 - 1897693 - R 95 -8.9 -5.29782 | gap 1, opp_overlap 1897691 1897693 CACACCTATAAAAAA TCCCTATAG-GA TTAC TCACTATAGGGA TATTTTTTAATCAAT VFMJ11_1789 1898646 - 1897753 - | import inner membrane translocase, subunit Tim44 TERM 2162 1898487 - 1898503 + g 91 -8.1 -5.18715 | TTGTTGTGTCTTGCT TACCAAT CGT ATTGGTA TTTTGTTGTTTTTGT VFMJ11_1790 1898911 - 1899468 + | transcriptional regulator, TetR family VFMJ11_1791 1899498 - 1901366 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase menE 1902746 - 1901346 - | O-succinylbenzoate-CoA ligase TERM 2163 1901597 - 1901615 + g 76 -7.4 -4.14633 | opp_overlap 1901589, overlap 1901596 TATCAATCTCATGAT GAGCCAGT AAC ACTTGCTC TATTTTTTCAGGATG menC 1903708 - 1902734 - | o-succinylbenzoic acid synthetase TERM 2164 1903754 - 1903737 - R 100 -7.7 -5.92399 | opp_overlap 1903739 CAATAAAAGAAAAAA GAGACTC AAAG GAGCCTC TAATACTTAATTGAA menB 1904650 - 1903784 - | naphthoate synthase TERM 2165 1904176 - 1904160 - G 73 -7.3 -4.12902 | opp_overlap 1904158 1904160 1904163, overlap 1904163 CAACCACCGTCAAAA GAACCTA CTT TAGGTCC TGTTTGACCAAACTG VFMJ11_1795 1905420 - 1904656 - | putative acyl-CoA thioester hydrolase TERM 2166 1905422 - 1905380 - G 82 -8.7 -4.1822 | gap 1, opp_overlap 1905383 1905391, overlap 1905383 1905391 GTTGATCCTAACAAA CCATGTAAAAATACCACACA AGGT TGAGTGGTATTTTT-CATTG TTTCTAATTGTTTAG TERM 2167 1905419 - 1905383 - G 70 -9 -3.10958 | gap 1, opp_overlap 1905383 1905391, overlap 1905380 1905391 GATCCTAACAAACCA TGTAAAAATACCACACA AGGT TGAGTGGTATTTTT-CA TTGTTTCTAATTGTT TERM 2168 1905383 - 1905419 + g 85 -9 -4.1774 | gap 1, opp_overlap 1905383 1905380 1905391, overlap 1905391 GATCCTAACAAACCA TGTAAAAATACCACACA AGGT TGAGTGGTATTTTT-CA TTGTTTCTAATTGTT TERM 2169 1905412 - 1905391 - G 83 -7.3 -4.72386 | opp_overlap 1905383 1905391, overlap 1905383 1905380 CAAACCATGTAAAAA TACCACACA AGGT TGAGTGGTA TTTTTCATTGTTTCT TERM 2170 1905391 - 1905412 + g 86 -7.3 -5.05712 | opp_overlap 1905391 1905383 1905380, overlap 1905383 CAAACCATGTAAAAA TACCACACA AGGT TGAGTGGTA TTTTTCATTGTTTCT menD 1907167 - 1905434 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase VFMJ11_1797 1908486 - 1907164 - | menaquinone-specific isochorismate synthase VFMJ11_1798 1908870 - 1910084 + | aminotransferase, class I and II TERM 2171 1910134 - 1910103 - T 77 -5.9 -4.82901 | opp_overlap 1910110 1910131, overlap 1910105 1910110 TTCTTGTTATAAAAA TTCAAAAGCCTGC TCACTT GCAGGCTTTTTTA TGCAATAAATATTAA TERM 2172 1910110 - 1910127 + T 90 -8.4 -5.26316 | opp_overlap 1910105 1910103 1910110 TATAAAAATTCAAAA GCCTGC TCACTT GCAGGC TTTTTTATGCAATAA TERM 2173 1910127 - 1910110 - T 84 -8.4 -4.5115 | opp_overlap 1910110, overlap 1910105 1910103 TATAAAAATTCAAAA GCCTGC TCACTT GCAGGC TTTTTTATGCAATAA VFMJ11_1799 1910679 - 1910146 - | riboflavin biosynthesis protein RibD C- domain protein VFMJ11_1800 1910790 - 1911353 + | transcriptional regulator, TetR family VFMJ11_1801 1912234 - 1911350 - | transcriptional regulator, AraC family TERM 2174 1912397 - 1912381 - H 71 -6.6 -4.10744 | opp_overlap 1912380 1912381 TTATTGAAATAATAA GCTCTA GAAAA TAGAGC ATCCTTTTTGGAAGA VFMJ11_1802 1912427 - 1913575 + | alcohol dehydrogenase YqhD TERM 2175 1913582 - 1913620 + T 100 -11.2 -4.09864 | opp_overlap 1913585, overlap 1913585 1913587 1913608 GTAAAATAACTTTCT AAATACTGACTCAGAATA ATC TGTTCTGAGTCAGTATGA TTTTACAAACTAACT TERM 2176 1913617 - 1913585 - T 100 -15.1 -3.59649 | opp_overlap 1913585 1913582 1913587 1913608 AAATAACTTTCTAAA TACTGACTCAGAATA ATC TGTTCTGAGTCAGTA TGATTTTACAAACTA TERM 2177 1913585 - 1913617 + T 100 -17.3 -3.08508 | opp_overlap 1913585, overlap 1913582 1913587 1913608 AAATAACTTTCTAAA TACTGACTCAGAATA ATC TGTTCTGAGTCAGTA TGATTTTACAAACTA TERM 2178 1913587 - 1913615 + T 100 -15.5 -3.09823 | opp_overlap 1913585, overlap 1913585 1913582 1913608 ATAACTTTCTAAATA CTGACTCAGAATA ATC TGTTCTGAGTCAG TATGATTTTACAAAC VFMJ11_1803 1914939 - 1913635 - | hypothetical protein TERM 2179 1915060 - 1915102 + r 87 -10.8 -3.51924 | opp_overlap 1915061 1915070, overlap 1915061 1915070 TTTGATTAATTTTAA ATAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTAA TTCTATCAATAAAGA TERM 2180 1915061 - 1915101 + r 93 -14.3 -2.7094 | opp_overlap 1915061 1915070, overlap 1915060 1915070 TTGATTAATTTTAAA TAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTA ATTCTATCAATAAAG TERM 2181 1915101 - 1915061 - R 100 -16.5 -3.67976 | opp_overlap 1915061 1915060 1915070, overlap 1915070 TTGATTAATTTTAAA TAAAAAAAACCGCACCAAT TAA ATTGGTACGGTTTATTTTA ATTCTATCAATAAAG TERM 2182 1915092 - 1915070 - R 100 -12.8 -6.23545 | opp_overlap 1915061 1915060 1915070, overlap 1915061 TTTAAATAAAAAAAA CCGCACCAAT TAA ATTGGTACGG TTTATTTTAATTCTA TERM 2183 1915070 - 1915092 + r 100 -10.6 -4.80487 | opp_overlap 1915070 1915061, overlap 1915061 1915060 TTTAAATAAAAAAAA CCGCACCAAT TAA ATTGGTACGG TTTATTTTAATTCTA VFMJ11_1804 1915990 - 1915118 - | transporter, drug/metabolite exporter family TERM 2184 1916040 - 1916014 - R 76 -3.7 -5.22312 | gap 1, opp_overlap 1916014 ATTCACATTAAAAAA GGGAAGCAGATC ATAC GA-CTGTTCCCC TCATTTGCCAACTGC VFMJ11_1805 1917482 - 1916085 - | coniferyl aldehyde dehydrogenase TERM 2185 1916555 - 1916567 + g 76 -3.3 -5.28942 | opp_overlap 1916542 1916554, overlap 1916550 1916554 1916556 CACACTCTATCGAAG TGAGC GTC GCTCC TTTTTCTTTAGCATC TERM 2186 1919005 - 1919034 + G 83 -9.3 -4.08974 | gap 1, opp_overlap 1919004 AATTGCTGATTATAT CGCTG-GCATGACC GAT GGCTATGCTCAGCG TTTATATAATCAACT VFMJ11_1806 1917719 - 1919065 + | deoxyguanosinetriphosphate triphosphohydrolase TERM 2187 1919073 - 1919116 + T 74 -9.2 -3.03771 | opp_overlap 1919069 1919073, overlap 1919075 CGATTTAAGAATCAA TACCAATTCAAATAAGTA TTAATATT TACTTACTTGGATTGGTA TATTACAAGCTATGA TERM 2188 1919116 - 1919073 - T 80 -9.2 -3.54902 | opp_overlap 1919073 1919075, overlap 1919069 CGATTTAAGAATCAA TACCAATTCAAATAAGTA TTAATATT TACTTACTTGGATTGGTA TATTACAAGCTATGA VFMJ11_1807 1919749 - 1919126 - | hypothetical cytosolic protein TERM 2189 1919529 - 1919506 - G 76 -3.2 -5.2853 | gap 1, overlap 1919507 1919508 TATCTAAAAACAAAA CTTGATGATGG TAA CTATCATCA-G CTAATAATTGGTTTA VFMJ11_1808 1919763 - 1920326 + | integral membrane protein recR 1920900 - 1920298 - | recombination protein RecR TERM 2190 1920945 - 1920928 - R 93 -6.9 -5.61881 | opp_overlap 1920928 1920942 TCCTAAAAAGAAAAA GGCAGCC ACTG AGCCGCC TAATTATTCCAAGAT VFMJ11_1810 1921337 - 1921002 - | hypothetical protein VFMJ11_1811 1923572 - 1921443 - | DNA polymerase III subunit tau TERM 2191 1923650 - 1923623 - R 93 -7.8 -5.59357 | AGCACAGCAAAAAAA TGAGATCTTCCT TGAT AGAGAGATCTCA CGTAATTAACTGTGT apt 1924215 - 1923676 - | adenine phosphoribosyltransferase TERM 2192 1924078 - 1924094 + g 73 -8.1 -3.84915 | GCCTTGCTTATACTT TTCAACT AAT AGTTGAA TTGTTGCTTGGTATG TERM 2193 1924464 - 1924491 + rH 70 -2.2 -5.25656 | gap 1, overlap 1924490 CAAAACTTAGTATTA TCAA-AAAGAAGG TTT TTTTCTTTATTGA TTTTTTAATCGTTTT VFMJ11_1814 1925882 - 1924776 - | Hnr protein VFMJ11_1813 1925836 - 1925979 + | hypothetical protein VFMJ11_1815 1926130 - 1927005 + | transcriptional regulator, LysR family TERM 2194 1927025 - 1927042 + T 100 -11.3 -5.88565 | opp_overlap 1927025 TTACATACAAAAAAA GCCTGTG AAAT CACAGGC TTTTTTTATTCTGAA TERM 2195 1927042 - 1927025 - T 100 -11.3 -5.76633 | opp_overlap 1927025 TTACATACAAAAAAA GCCTGTG AAAT CACAGGC TTTTTTTATTCTGAA purF 1928579 - 1927065 - | amidophosphoribosyltransferase TERM 2196 1928627 - 1928608 - R 100 -13.6 -5.03145 | CAATTTGCTAAAAAA CTGGCGCT ATTT AGCGCCAG GAAGAAAACTTGATG cvpA 1929105 - 1928614 - | CvpA family protein VFMJ11_1818 1929724 - 1929167 - | DedD protein VFMJ11_1819 1931014 - 1929734 - | bifunctional protein FolC TERM 2197 1930995 - 1930962 - G 83 -9.8 -3.90922 | gap 2, opp_overlap 1930966 ATGCTTTCTAAATAA CGAA-GCCACATC-GA CAAA TCAGATGTGGCTTTCG GAGAATCAAATGTTG TERM 2198 1930966 - 1930990 + g 77 -9.4 -3.54424 | gap 1, opp_overlap 1930962 TTTCTAAATAACGAA GCCACATC-GA CAAA TCAGATGTGGC TTTCGGAGAATCAAA accD 1931999 - 1931115 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit VFMJ11_1821 1932159 - 1931986 - | hypothetical protein truA 1932940 - 1932152 - | tRNA pseudouridine synthase A TERM 2199 1932420 - 1932405 - G 71 -4 -4.84492 | gap 1, opp_overlap 1932405 TCAATTACAATAAAA TCAC-CG TGA CGAGTGA CTTTGAGGTGCATTA TERM 2200 1933005 - 1932984 - R 88 -5.8 -5.67063 | gap 1, opp_overlap 1932984 1932978 GTCATTATAAAAAAA GGCGG-AGC TCACT GCCACCGCC TTTTTAATATTGTTT TERM 2201 1932984 - 1933005 + r 73 -4.3 -4.94672 | opp_overlap 1932984, overlap 1932978 GTCATTATAAAAAAA GGCGGAG CTCACTGC CACCGCC TTTTTAATATTGTTT VFMJ11_1823 1937160 - 1933027 - | latent nuclear antigen TERM 2202 1936298 - 1936308 + g 85 -5.4 -5.24129 | AACTTATCCATTGCT GTTG GTT CAAC TTTTTTATCAGCAGC TERM 2203 1937267 - 1937296 + r 81 -10.9 -2.76492 | opp_overlap 1937272, overlap 1937272 GTGCTTTATGGAAGA AAAAAGCCTTAGT TTTC ACTAAGGCTTTTA ATTTAAAGTAAATAA TERM 2204 1937291 - 1937272 - R 100 -10.8 -5.4833 | opp_overlap 1937272 1937267 TTATGGAAGAAAAAA GCCTTAGT TTTC ACTAAGGC TTTTAATTTAAAGTA TERM 2205 1937272 - 1937291 + r 100 -10.8 -4.55798 | opp_overlap 1937272, overlap 1937267 TTATGGAAGAAAAAA GCCTTAGT TTTC ACTAAGGC TTTTAATTTAAAGTA asd_2 1938364 - 1937351 - | aspartate-semialdehyde dehydrogenase TERM 2206 1937788 - 1937800 + g 74 -6.3 -4.41114 | AGTTAAACGCAATTT GCTTA TCG TAAGC TTTGTTCTCTGCTGG VFMJ11_1825 1939494 - 1938364 - | erythronate-4-phosphate dehydrogenase TERM 2207 1939560 - 1939599 + r 83 -7.4 -4.6951 | gap 1, opp_overlap 1939568, overlap 1939568 AACAAAAAACAGGTA TAA-AAAAACCCAGCCAAT TTA AGTGACTGGGTTTTTATTA TTTGTTTTCAGTGAT TERM 2208 1939590 - 1939568 - R 93 -8.4 -5.65177 | opp_overlap 1939568 1939560 ACAGGTATAAAAAAA CCCAGCCAAT TTA AGTGACTGGG TTTTTATTATTTGTT TERM 2209 1939568 - 1939590 + r 86 -6.2 -5.44198 | opp_overlap 1939568, overlap 1939560 ACAGGTATAAAAAAA CCCAGCCAAT TTA AGTGACTGGG TTTTTATTATTTGTT VFMJ11_1826 1940833 - 1939622 - | 3-oxoacyl-(acyl-carrier-protein) synthase 1 TERM 2210 1941773 - 1941763 - g 70 -3.2 -4.99947 | CTCAACCAAAGAAAA CATC ACT GACG TTGCTATTATAGGAG VFMJ11_1827 1940954 - 1942996 + | protein YfcK VFMJ11_1828 1944097 - 1943126 - | membrane-bound lytic murein transglycosylase B TERM 2211 1943571 - 1943585 + g 76 -7.2 -4.17657 | CCCATTGCACCAGCC CATGAA CCT TTCATG TTTTCAGGTGTAATG VFMJ11_1829 1944383 - 1944102 - | YcgL domain superfamily protein minC 1944568 - 1945233 + | septum site-determining protein MinC minD 1945259 - 1946071 + | septum site-determining protein MinD minE 1946074 - 1946337 + | cell division topological specificity factor MinE TERM 2212 1946364 - 1946395 + T 100 -11.8 -4.67556 | opp_overlap 1946371, overlap 1946371 AGTTTTAAGCACGCA TTAAAAAGGTGACT CATG AGTCACCTTTTTTA TTTTTAGACTGTTAT TERM 2213 1946388 - 1946371 - T 100 -9.9 -4.75372 | opp_overlap 1946371 1946364 AGCACGCATTAAAAA GGTGACT CATG AGTCACC TTTTTTATTTTTAGA TERM 2214 1946371 - 1946388 + T 100 -9.9 -5.93252 | opp_overlap 1946371, overlap 1946364 AGCACGCATTAAAAA GGTGACT CATG AGTCACC TTTTTTATTTTTAGA rnd 1947528 - 1946407 - | ribonuclease D TERM 2215 1947552 - 1947592 + r 73 -9.2 -2.91383 | opp_overlap 1947557, overlap 1947554 1947557 CTTAATAGATGCCAA GGCAAGATAGCTTAATCT CAGTA AAACTAAGCTATCTTGTC TCTATAAATAAAAAT TERM 2216 1947587 - 1947557 - R 77 -9.2 -3.1875 | opp_overlap 1947554 1947552 1947557 TAGATGCCAAGGCAA GATAGCTTAATCTC AGT AAAACTAAGCTATC TTGTCTCTATAAATA TERM 2217 1947602 - 1947637 + r 71 -3.3 -5.1523 | opp_overlap 1947607, overlap 1947604 1947605 1947607 1947610 CTTGTCTCTATAAAT AAAAATAATGCCAGC GATTAG GCTGGCATTATCGTA TTTTTATATTGTACC TERM 2218 1947605 - 1947634 + r 74 -9.4 -3.10146 | opp_overlap 1947607, overlap 1947604 1947602 1947607 1947610 GTCTCTATAAATAAA AATAATGCCAGC GATTAG GCTGGCATTATC GTATTTTTATATTGT TERM 2219 1947607 - 1947632 + r 85 -12 -3.08388 | opp_overlap 1947607, overlap 1947605 1947604 1947602 1947610 CTCTATAAATAAAAA TAATGCCAGC GATTAG GCTGGCATTA TCGTATTTTTATATT TERM 2220 1947632 - 1947607 - R 100 -12 -5.38054 | opp_overlap 1947605 1947604 1947602 1947607 1947610 CTCTATAAATAAAAA TAATGCCAGC GATTAG GCTGGCATTA TCGTATTTTTATATT TERM 2221 1947610 - 1947629 + r 80 -9.3 -3.65068 | opp_overlap 1947607, overlap 1947607 1947605 1947604 1947602 TATAAATAAAAATAA TGCCAGC GATTAG GCTGGCA TTATCGTATTTTTAT VFMJ11_1834 1949339 - 1947657 - | long-chain-fatty-acid--CoA ligase TERM 2222 1949397 - 1949410 + r 71 -5.3 -4.50976 | opp_overlap 1949397 AATAACTCTATGACA GTGAT CACT ATCAC TTTTGTAGTGTAGAC TERM 2223 1949413 - 1949439 + r 78 -7.4 -4.25848 | TGATCACTATCACTT TTGTAGTGTAGA CTA TTTACTCTACAA TTTTAGTCAACCATT VFMJ11_1835 1950394 - 1949525 - | hydrolase TERM 2224 1950171 - 1950155 - G 82 -3.7 -5.3671 | overlap 1950157 AATATAATCAAAAAA GTGATAA AAA TTATCCC CACCTTTATGAGAGG VFMJ11_1836 1950952 - 1950401 - | outer membrane protein Slp VFMJ11_1837 1951323 - 1951024 - | chromosome segregation ATPase TERM 2225 1951372 - 1951345 - R 75 -7 -4.20367 | opp_overlap 1951349 CTTTTGAATAAACAA CTAAGCGAGG TTTTCACT CCTCGCTTGG ATATTAAAACCTATT VFMJ11_1838 1952084 - 1951383 - | putative M22 peptidase YeaZ family protein VFMJ11_1839 1954050 - 1952092 - | ATP-dependent helicase, DinG family TERM 2226 1953470 - 1953480 + g 72 -3.2 -5.01732 | ACAACCACAACATCC GCAT CAA GTGC TTTTTTACGCGCCTT purU 1954286 - 1955119 + | formyltetrahydrofolate deformylase TERM 2227 1955122 - 1955106 - T 80 -6.6 -4.65916 | TTTATGGCAATAAAA CCGTTA TTCTT TAACGG CTGAAATAAAAAACG TERM 2228 1955131 - 1955161 + T 100 -15.6 -4.90869 | opp_overlap 1955136, overlap 1955136 TTAACGGCTGAAATA AAAAACGGCGATCA TGA TGATCGCCGTTTTA TTTTTAATTCATGGT TERM 2229 1955156 - 1955136 - T 100 -15.5 -5.63517 | opp_overlap 1955136 1955131 GGCTGAAATAAAAAA CGGCGATCA TGA TGATCGCCG TTTTATTTTTAATTC TERM 2230 1955136 - 1955156 + T 100 -15.5 -5.34655 | opp_overlap 1955136, overlap 1955131 GGCTGAAATAAAAAA CGGCGATCA TGA TGATCGCCG TTTTATTTTTAATTC TERM 2231 1955185 - 1955203 + T 73 -7.5 -3.73097 | overlap 1955174 TCATGGTTATTGAGC CGCAATA AACTC TATTGCG TATTTATTAAATTCT VFMJ11_1841 1955973 - 1955176 - | tetranactin resistance protein VFMJ11_1842 1956924 - 1956139 - | transcriptional regulator, AraC family VFMJ11_1843 1957013 - 1957531 + | transporter, drug/metabolite exporter family VFMJ11_1844 1957546 - 1957830 + | transporter, drug/metabolite exporter family TERM 2232 1957889 - 1957861 - T 76 -7.5 -4.04927 | opp_overlap 1957860 1957861 1957863, overlap 1957863 GCAATCATCAAAGAA TATGCACCTCT AATATAA AGAGGTGCATC ACTTTTATTCAGTCA TERM 2233 1957887 - 1957863 - T 82 -10.1 -3.60925 | opp_overlap 1957863 1957861 1957860, overlap 1957861 AATCATCAAAGAATA TGCACCTCT AATATAA AGAGGTGCA TCACTTTTATTCAGT TERM 2234 1957863 - 1957887 + T 76 -10.1 -2.85242 | opp_overlap 1957861 1957863, overlap 1957861 1957860 AATCATCAAAGAATA TGCACCTCT AATATAA AGAGGTGCA TCACTTTTATTCAGT VFMJ11_1845 1959066 - 1957894 - | protein MalY TERM 2235 1959136 - 1959116 - R 100 -11.2 -5.77734 | AAACAAAAAGAAAAA GCGGAGTT AAATA AACTCCGC AATGAATACCAATCT malX 1960574 - 1959189 - | pts system, maltose and glucose-specific iibc component TERM 2236 1961987 - 1961977 - g 71 -6.8 -4.11938 | CAAATCAATGATAAA GGCA GTG TGCC TCAAAGCTTAATCTT VFMJ11_1847 1961014 - 1962036 + | maltose regulon regulatory protein MalI TERM 2237 1962195 - 1962206 + G 70 -3.6 -4.86731 | TATGTGTATTATTAC CGCC ACTT GGTG TTTTCTTTGCCAAAG VFMJ11_1848 1962155 - 1962313 + | hypothetical protein TERM 2238 1962325 - 1962351 + T 85 -9.4 -3.91984 | opp_overlap 1962327, overlap 1962327 ATAGCACAAAATAAA AAGCGAAGCCTA TGA TTGGCTTCGCTC TTATTTAAAAAATAT TERM 2239 1962327 - 1962349 + T 91 -12 -3.54755 | opp_overlap 1962327, overlap 1962325 AGCACAAAATAAAAA GCGAAGCCTA TGA TTGGCTTCGC TCTTATTTAAAAAAT TERM 2240 1962349 - 1962327 - T 100 -12 -5.56263 | opp_overlap 1962327 1962325 AGCACAAAATAAAAA GCGAAGCCTA TGA TTGGCTTCGC TCTTATTTAAAAAAT metE 1964702 - 1962378 - | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase TERM 2241 1964269 - 1964258 - G 72 -4.4 -4.74801 | CAATCTCATCAAAAA GTTG TGAC CAAC TGACATTAAATTTAT VFMJ11_1850 1964923 - 1965834 + | transcriptional activator protein MetR VFMJ11_1851 1966790 - 1966083 - | hypothetical protein TERM 2242 1968030 - 1968004 - g 82 -3.8 -5.47399 | opp_overlap 1968012, overlap 1968012 TGAACGGTAAAAAAA CATTAGAAGATT TAG AATCTTGTTATG AAGGTATGGCTGATG VFMJ11_1852 1967121 - 1968488 + | anaerobic C4-dicarboxylate transporter TERM 2243 1968539 - 1968515 - f 82 -10.1 -3.69333 | opp_overlap 1968515 GATAACTTATTGAAA CGCCAGTAA TTCAACG TTACTGGCG TTTTTTTATCTTTAA TERM 2244 1968515 - 1968539 + F 100 -10.8 -5.88197 | opp_overlap 1968515 GATAACTTATTGAAA CGCCAGTAAT TCAAC GTTACTGGCG TTTTTTTATCTTTAA TERM 2245 1969212 - 1969200 - g 79 -3.3 -5.40625 | ACATCAGATAAAAAA CTTCG CCA CGATG ACGCCTACACGCCAA TERM 2246 1969724 - 1969702 - g 80 -6.2 -4.69664 | opp_overlap 1969703, overlap 1969703 GACATGACGCAAAAA CGACGGCAGT TCG ACTTCCGCCA TTTGAAAAGTTAAAT TERM 2247 1970077 - 1970051 - g 71 -6 -4.21194 | overlap 1970052 TCGCATCATTCAAAA CCGTTCAAAA GAATCAA TTTTGAACGA GTTAGAAGAAATTCG VFMJ11_1853 1968858 - 1971227 + | protein VV1_2212 TERM 2248 1971292 - 1971253 - T 81 -9.7 -3.46936 | gap 2, opp_overlap 1971261, overlap 1971261 AAATCGTAGTAAATA TAA-AAAAAGCGAACC-CA ATAA TGAGGTTCGCTTTTTATTA TCTCAAATAATAATC TERM 2249 1971261 - 1971283 + T 95 -8.5 -5.24796 | gap 1, opp_overlap 1971253 1971261 GTAAATATAAAAAAA GCGAACC-CA ATAA TGAGGTTCGC TTTTTATTATCTCAA TERM 2250 1971283 - 1971261 - T 100 -8.5 -5.88197 | gap 1, opp_overlap 1971261, overlap 1971253 GTAAATATAAAAAAA GCGAACC-CA ATAA TGAGGTTCGC TTTTTATTATCTCAA tyrS 1972639 - 1971359 - | tyrosyl-tRNA synthetase VFMJ11_1855 1972917 - 1973687 + | hypothetical protein TERM 2251 1973700 - 1973731 + F 74 -6.7 -4.34345 | opp_overlap 1973703, overlap 1973703 TAGAATAAATACTAA AAAGAGCAATAGG CTTAAC CTTATTGCTCTTC TTTTCATACTCTCTC TERM 2252 1973728 - 1973703 - f 88 -7.7 -4.97461 | gap 1, opp_overlap 1973700 1973703 AATAAATACTAAAAA GAGCAAT-AGGC TTA ACCTTATTGCTC TTCTTTTCATACTCT TERM 2253 1973703 - 1973728 + F 83 -8.4 -4.28045 | opp_overlap 1973703, overlap 1973700 AATAAATACTAAAAA GAGCAATAGG CTTAAC CTTATTGCTC TTCTTTTCATACTCT VFMJ11_1856 1974042 - 1974623 + | hypothetical protein TERM 2254 1974688 - 1974644 - f 72 -5.9 -4.2828 | opp_overlap 1974649 1974650, overlap 1974648 1974649 1974650 CTTTATTTATGAAAA GAAAGGTTAGGCATTTTCA AAAACAA TGAAAATGCCTAAATTTAC AACACTTAATCATTA TERM 2255 1974684 - 1974648 - f 74 -5.3 -4.7261 | opp_overlap 1974649 1974650, overlap 1974644 1974649 1974650 ATTTATGAAAAGAAA GGTTAGGCATTTTCA AAAACAA TGAAAATGCCTAAAT TTACAACACTTAATC TERM 2256 1974649 - 1974683 + F 77 -8.8 -3.55801 | opp_overlap 1974648 1974644 1974649 1974650, overlap 1974650 TTTATGAAAAGAAAG GTTAGGCATTTTCA AAAACAA TGAAAATGCCTAAA TTTACAACACTTAAT TERM 2257 1974683 - 1974649 - f 75 -8.8 -3.42481 | opp_overlap 1974649 1974650, overlap 1974648 1974644 1974650 TTTATGAAAAGAAAG GTTAGGCATTTTCA AAAACAA TGAAAATGCCTAAA TTTACAACACTTAAT TERM 2258 1974682 - 1974650 - f 86 -12.3 -2.64766 | opp_overlap 1974650 1974649, overlap 1974649 1974648 1974644 TTATGAAAAGAAAGG TTAGGCATTTTCA AAAACAA TGAAAATGCCTAA ATTTACAACACTTAA TERM 2259 1974650 - 1974682 + F 86 -12.3 -2.73159 | opp_overlap 1974649 1974648 1974644 1974650, overlap 1974649 TTATGAAAAGAAAGG TTAGGCATTTTCA AAAACAA TGAAAATGCCTAA ATTTACAACACTTAA VFMJ11_1857 1974996 - 1976405 + | sodium/proline symporter TERM 2260 1976596 - 1976579 - f 82 -9.9 -3.66921 | opp_overlap 1976579 AATGCTAATCTTAAA GCAGATC TTCG GATCTGC TTTTTTATACCGTCT TERM 2261 1976579 - 1976596 + F 100 -9.9 -5.26918 | opp_overlap 1976579 AATGCTAATCTTAAA GCAGATC TTCG GATCTGC TTTTTTATACCGTCT TERM 2262 1976758 - 1976740 - g 74 -3.8 -5.10526 | ATATTAAAAAACAAA CCTGAATC TAT GCTTCAAG CCTCACCTAAAGGCA VFMJ11_1858 1976668 - 1977258 + | stringent starvation protein A TERM 2263 1977264 - 1977281 + T 93 -6.9 -5.72254 | opp_overlap 1977264 ACAAAAATAAAAAAA GGAGACC AATT GGCCTCC TTTTTTATTCTTTCA TERM 2264 1977281 - 1977264 - T 100 -9.1 -6.23317 | opp_overlap 1977264 ACAAAAATAAAAAAA GGAGACC AATT GGCCTCC TTTTTTATTCTTTCA ptsG 1978732 - 1977305 - | pts system, glucose-specific iibc component TERM 2265 1978639 - 1978625 - G 71 -6.4 -4.14598 | TGGAAGGAAACTAAA GTTGGC TGC ACCAAC CCCTAAAAGAATACC TERM 2266 1979151 - 1979136 - R 100 -6.8 -6.55664 | opp_overlap 1979136 TAAAACAAAAAAAAA GGAGAC CTAA GCCTCC TTTATCGATTACTTT VFMJ11_1860 1979952 - 1979182 - | hydrolase, TatD family VFMJ11_1861 1980925 - 1979942 - | DNA polymerase III, delta' subunit TERM 2267 1980373 - 1980387 + g 78 -7.2 -4.41348 | overlap 1980369 TAGACTGCATTGATA CTGAAA GGT TTTCAG TTTCTTTAAGCCAAA TERM 2268 1980766 - 1980744 - G 71 -4.1 -4.94902 | overlap 1980745 1980751 CAACTATGACAAAAA CCACAAGGT TCAAT ACCTTGCGT TAAACACAATAGCGT tmk 1981547 - 1980915 - | thymidylate kinase VFMJ11_1863 1982560 - 1981550 - | aminodeoxychorismate lyase pabC 1983360 - 1982554 - | aminodeoxychorismate lyase TERM 2269 1983395 - 1983421 + r 100 -18.2 -3.64103 | opp_overlap 1983395 ACTAATAAATAAAAA GGCGGTTTGATA TAA TATCAAACCGCC TTTAAAGTGTAACTG TERM 2270 1983421 - 1983395 - R 100 -18.2 -5.48514 | opp_overlap 1983395 ACTAATAAATAAAAA GGCGGTTTGATA TAA TATCAAACCGCC TTTAAAGTGTAACTG fabF 1984717 - 1983473 - | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 2271 1984406 - 1984427 + g 93 -9.5 -4.68384 | gap 1, opp_overlap 1984405 1984406 AATACCTGAACCAAT TGCTGCACCG ATA CGGTG-AGCA TTTTCTTCAGTAACT TERM 2272 1984427 - 1984406 - G 70 -9.5 -2.62018 | gap 1, opp_overlap 1984406, overlap 1984405 AATACCTGAACCAAT TGCTGCACCG ATA CGGTG-AGCA TTTTCTTCAGTAACT TERM 2273 1984771 - 1984802 + r 75 -8 -3.7456 | gap 1, opp_overlap 1984773 1984775 1984791, overlap 1984769 1984772 TTTGTTGCGTATAAA AACTC-AGGCGGTCA AGA TGACCGCCTGGAGGG TATTTCTTACTGTGC TERM 2274 1984772 - 1984801 + r 83 -11.5 -2.84013 | gap 1, opp_overlap 1984773 1984775 1984791, overlap 1984771 1984769 TTGTTGCGTATAAAA ACTC-AGGCGGTCA AGA TGACCGCCTGGAGG GTATTTCTTACTGTG TERM 2275 1984800 - 1984773 - R 100 -15 -4.82901 | gap 1, opp_overlap 1984772 1984771 1984769, overlap 1984775 1984791 TGTTGCGTATAAAAA CTC-AGGCGGTCA AGA TGACCGCCTGGAG GGTATTTCTTACTGT TERM 2276 1984797 - 1984775 - R 100 -17.8 -2.6933 | opp_overlap 1984772 1984771 1984769, overlap 1984773 1984791 TTGCGTATAAAAACT CAGGCGGTCA AGA TGACCGCCTG GAGGGTATTTCTTAC acpP 1985042 - 1984809 - | acyl carrier protein TERM 2277 1985138 - 1985152 + r 70 -4.2 -4.75404 | opp_overlap 1985138 1985139, overlap 1985139 ACATTGCTGGTCAAA CCACGA TTT TCGTGA TTTTTAGTGCAATTT fabG 1985949 - 1985212 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 2278 1985433 - 1985402 - G 82 -8 -4.63218 | opp_overlap 1985423, overlap 1985404 TCTGTTTCAATAAAA CCTGGTGCAACAGT ATTT ACTGTTACGCCACG TGAAGCAACTTCACG fabD 1986889 - 1985966 - | malonyl CoA-acyl carrier protein transacylase VFMJ11_1869 1987909 - 1986956 - | 3-oxoacyl-(acyl-carrier-protein) synthase 3 protein 1 plsX 1988940 - 1987915 - | fatty acid/phospholipid synthesis protein PlsX TERM 2279 1988879 - 1988860 - G 72 -9.3 -3.33261 | opp_overlap 1988857 TGGGAATTGTGACAA TGCCTGC ACGGCG GCAGGCA CTGTAACTTGGGGAC rpmF 1989121 - 1988951 - | ribosomal protein L32 VFMJ11_1872 1989659 - 1989138 - | hypothetical protein maf_2 1989957 - 1990538 + | septum formation protein Maf TERM 2280 1990574 - 1990551 - T 100 -9 -5.87996 | opp_overlap 1990550 1990551 TAATTAATAAAAAAA CGATAAGTAA CAAT CTACTTATCG CTTCTAGCATTTCAA VFMJ11_1874 1991564 - 1990617 - | ribosomal large subunit pseudouridine synthase C TERM 2281 1991354 - 1991387 + g 71 -6 -4.20025 | ATTCCGGCACTTTTA CTGGAGGAATGCGA ACTACG TCGCCTTCTTGCAG TTTATATTCAGGCTT VFMJ11_1875 1992008 - 1994995 + | ribonuclease E TERM 2282 1995069 - 1995036 - f 100 -9.7 -4.85618 | opp_overlap 1995040, overlap 1995040 AAATAACCAATAAAA TTAAGCAAGTTACGT TTCG ACGTAACTTGCTTTT TTTATATCTAATTCC TERM 2283 1995040 - 1995065 + F 100 -14.9 -5.76633 | opp_overlap 1995036 1995040 AACCAATAAAATTAA GCAAGTTACGT TTCG ACGTAACTTGC TTTTTTTATATCTAA TERM 2284 1995065 - 1995040 - f 100 -14.9 -3.84772 | opp_overlap 1995040, overlap 1995036 AACCAATAAAATTAA GCAAGTTACGT TTCG ACGTAACTTGC TTTTTTTATATCTAA VFMJ11_1876 1995172 - 1996719 + | sulfate transporter TERM 2285 1996783 - 1996759 - f 72 -5 -4.65838 | gap 1, opp_overlap 1996759 GATAGACTTTAAAAA TCCCGATATGG TTCT CC-TGTCGGGA TTTTTTATATTCACC TERM 2286 1996759 - 1996783 + F 93 -7.2 -5.47159 | gap 1, opp_overlap 1996759 GATAGACTTTAAAAA TCCCGATATGG TTCT CC-TGTCGGGA TTTTTTATATTCACC TERM 2287 1996897 - 1996879 - g 75 -2.5 -5.27769 | gap 1, overlap 1996882 AGAAAAAATTAAAAA CA-ACGTT GATA AACGTGTG GCCGAGGCTCAAGAA cobO 1996820 - 1997425 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2288 1997468 - 1997441 - T 87 -6.4 -5.45802 | gap 1, opp_overlap 1997441 TGCCTAAAACAAAAA TGGCCTAC-TC TCTTAAT GATGTAGGCCA TTTCTTTATATGATG TERM 2289 1997441 - 1997468 + T 76 -6.4 -4.64048 | gap 1, opp_overlap 1997441 TGCCTAAAACAAAAA TGGCCTAC-TC TCTTAAT GATGTAGGCCA TTTCTTTATATGATG VFMJ11_1878 1999632 - 1997497 - | AsmA TERM 2290 1999788 - 1999769 - R 100 -11.4 -6.0427 | opp_overlap 1999768 1999769 ATGAGACAAAAAAAA GGCCGACA TAAT TGCCGGCC CTTTTAAAGATAAAT TERM 2291 1999769 - 1999788 + r 74 -9.2 -3.06694 | opp_overlap 1999769, overlap 1999768 ATGAGACAAAAAAAA GGCCGACA TAAT TGCCGGCC CTTTTAAAGATAAAT TERM 2292 1999803 - 1999831 + r 71 -9 -3.12521 | opp_overlap 1999803 1999805, overlap 1999801 1999799 1999798 1999805 CCTTTTAAAGATAAA TGTCTTACGCTT TTAAT AAGCGTGAGATA TGTGCTTTTAATACA TERM 2293 1999805 - 1999829 + r 74 -9.4 -3.11604 | opp_overlap 1999805 1999803, overlap 1999803 1999801 1999799 1999798 TTTTAAAGATAAATG TCTTACGCTT TTAAT AAGCGTGAGA TATGTGCTTTTAATA udk 2000454 - 1999807 - | uridine kinase VFMJ11_1880 2001626 - 2000559 - | iron-sulfur cluster assembly/repair protein ApbC metG 2001759 - 2003819 + | methionyl-tRNA synthetase TERM 2294 2003878 - 2003840 - T 70 -6.9 -3.7511 | opp_overlap 2003840 CTTTTTAGAAGATAA TACCAATCGAAGTAAAT CACTT ACTTACTGTGATTGGTA TAACTTACAAACAAA TERM 2295 2003884 - 2003927 + T 95 -14.2 -3.27923 | opp_overlap 2003886 2003896, overlap 2003896 GTGATTGGTATAACT TACAAACAAAAATAGAGACC AAAT GGTCTCTATTTTTTTATGTA TTAATGATATTACCA TERM 2296 2003925 - 2003886 - T 86 -12.4 -2.59748 | opp_overlap 2003884 2003896, overlap 2003896 GATTGGTATAACTTA CAAACAAAAATAGAGACC AAAT GGTCTCTATTTTTTTATG TATTAATGATATTAC TERM 2297 2003896 - 2003915 + T 100 -10.8 -5.80248 | opp_overlap 2003886 2003896, overlap 2003884 ACTTACAAACAAAAA TAGAGACC AAAT GGTCTCTA TTTTTTTATGTATTA TERM 2298 2003915 - 2003896 - T 100 -10.8 -5.38958 | opp_overlap 2003896 2003884, overlap 2003886 ACTTACAAACAAAAA TAGAGACC AAAT GGTCTCTA TTTTTTTATGTATTA pyrF 2004648 - 2003944 - | orotidine 5'-phosphate decarboxylase TERM 2299 2004754 - 2004736 - R 100 -11 -5.50499 | opp_overlap 2004736 TTACATTCAAAAAAA GAGGCACT CAG AGCGCCTC TTCAATTATTCACCA TERM 2300 2004736 - 2004754 + r 73 -8.8 -3.28745 | opp_overlap 2004736 TTACATTCAAAAAAA GAGGCACT CAG AGCGCCTC TTCAATTATTCACCA VFMJ11_1883 2005929 - 2004760 - | tetratricopeptide repeat family protein TERM 2301 2005248 - 2005263 + g 71 -6.2 -4.15833 | opp_overlap 2005247 CACCTTTATAATTAT CTTCTT CCAT AAGAAG TTTTGCCATCATAAT TERM 2302 2005828 - 2005805 - G 83 -11 -3.77177 | opp_overlap 2005805 AGCAATAGATTCAAA CCCGCCACGT ATTG ACGTGACAGG TGATTCGTTTCTTTT VFMJ11_1884 2006221 - 2005937 - | hypothetical protein TERM 2303 2006348 - 2006300 - R 100 -15 -4.22346 | gap 1, opp_overlap 2006314, overlap 2006304 2006314 TAAATGCATTGAAAA TGAACATAAAAAAACGGCATACT CAAA AGTATGCCGTTTTTGTATGC-CA ATTAGCATTAGCTGT TERM 2304 2006345 - 2006304 - R 100 -19.1 -3.69605 | opp_overlap 2006314, overlap 2006300 2006314 TGCATTGAAAATGAA CATAAAAAAACGGCATACT CAAA AGTATGCCGTTTTTGTATG CCAATTAGCATTAGC TERM 2305 2006335 - 2006314 - R 100 -13.1 -5.82172 | opp_overlap 2006314, overlap 2006304 2006300 ATGAACATAAAAAAA CGGCATACT CAAA AGTATGCCG TTTTTGTATGCCAAT TERM 2306 2006314 - 2006335 + r 100 -13.1 -4.9725 | opp_overlap 2006304 2006300 2006314 ATGAACATAAAAAAA CGGCATACT CAAA AGTATGCCG TTTTTGTATGCCAAT ihfB 2006637 - 2006356 - | integration host factor, beta subunit TERM 2307 2006669 - 2006686 + r 90 -11.3 -3.65638 | opp_overlap 2006669, overlap 2006663 GTTATCGAAAGAAAA GGGAGCA ATGT TGCTCCC TTCTAATTTACTTAT TERM 2308 2006686 - 2006669 - R 100 -11.3 -4.90778 | opp_overlap 2006669 2006663 GTTATCGAAAGAAAA GGGAGCA ATGT TGCTCCC TTCTAATTTACTTAT rpsA 2008371 - 2006698 - | ribosomal protein S1 TERM 2309 2007624 - 2007609 - G 71 -6.8 -4.08939 | TAAGACCTAGAGAAA CGCGAG TGCG CTCACG ATCGAACTTAAGAAC TERM 2310 2007865 - 2007885 + g 72 -4.7 -4.73388 | opp_overlap 2007870, overlap 2007866 2007870 GATAACAGCACGACG TGAAACAAC AAC GTTGTTACG TTTTTGGTCAAGCTT cmk 2009141 - 2008467 - | cytidylate kinase TERM 2311 2009238 - 2009259 + r 73 -7.3 -3.94746 | opp_overlap 2009238 TGAAAAACTAAAAAA GCTCTGAAT TTTG ATACAGAGC TTTCATTGAATATAA TERM 2312 2009259 - 2009238 - R 93 -7.3 -5.54079 | opp_overlap 2009238 TGAAAAACTAAAAAA GCTCTGAAT TTTG ATACAGAGC TTTCATTGAATATAA aroA 2010579 - 2009299 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2313 2009421 - 2009408 - G 79 -3.1 -5.38326 | overlap 2009410 GCAACTAAAGAAAAA CACAT CGCC ATGCG GTGGTCATCATAAGT TERM 2314 2009854 - 2009836 - G 73 -7.5 -3.98016 | overlap 2009834 AGCAGCAAGAAAATA TGATGCT GATGA AGCATCA CCTTCCACAAGAAAG TERM 2315 2010897 - 2010909 + G 80 -6.3 -4.68593 | CAGCTGATCAGTGCA TACCA GCA TGGTA TTTTTCCATGGTACA aat 2010765 - 2011484 + | leucyl/phenylalanyl-tRNA--protein transferase VFMJ11_1890 2011481 - 2012173 + | leucyl/phenylalanyl-tRNA--protein transferase infA 2012263 - 2012481 + | translation initiation factor IF-1 TERM 2316 2012562 - 2012524 - T 100 -7.1 -5.9003 | gap 2, opp_overlap 2012536, overlap 2012530 2012536 AAACTAATAAAAAAA CAATAACAAAAACCCAGTC AAT GACTGGG-TTTT-TTATTA GCTTTTAAAACAAGC TERM 2317 2012558 - 2012530 - T 100 -13.3 -4.50106 | opp_overlap 2012536, overlap 2012524 2012536 ATAAAAAAACAATAA CAAAAACCCAGTC AAT GACTGGGTTTTTT ATTAGCTTTTAAAAC TERM 2318 2012536 - 2012552 + T 100 -12.3 -5.52096 | opp_overlap 2012530 2012524 2012536 AAACAATAACAAAAA CCCAGTC AAT GACTGGG TTTTTTATTAGCTTT TERM 2319 2012552 - 2012536 - T 100 -12.3 -5.40014 | opp_overlap 2012536, overlap 2012530 2012524 AAACAATAACAAAAA CCCAGTC AAT GACTGGG TTTTTTATTAGCTTT clpA 2014856 - 2012604 - | ATP-dependent Clp protease ATP-binding subunit ClpA TERM 2320 2013724 - 2013734 + g 73 -6.8 -4.29106 | overlap 2013725 GATAGCTCTACCGCA GCAC GAA GTGC TTTATTGGTATAACG clpS 2015219 - 2014899 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2321 2015107 - 2015097 - G 76 -6.8 -4.31835 | opp_overlap 2015097 AACTTCGACAACAAA CTCC ATT GGAG TGTAATCGTCATTAT TERM 2322 2015651 - 2015665 + G 73 -8.6 -3.63228 | opp_overlap 2015650 2015651, overlap 2015647 AAGTGGTTCAATAAC GCCAAA GGG TTTGGC TTCATTTGTCCTGAA cspD 2015618 - 2015839 + | cold shock domain protein CspD TERM 2323 2015867 - 2015886 + F 88 -7.9 -5.0133 | opp_overlap 2015867 CAAGTTTATAAAAAA GGTGAGT CGACAT ACTCACC TTTTTTGAACCAATC TERM 2324 2015886 - 2015867 - f 89 -7.9 -5.27923 | opp_overlap 2015867 CAAGTTTATAAAAAA GGTGAGT CGACAT ACTCACC TTTTTTGAACCAATC VFMJ11_1895 2015948 - 2016490 + | hypothetical protein TERM 2325 2016516 - 2016500 - T 80 -6.5 -4.68506 | opp_overlap 2016500 AACTAAGCGTAAAAA GCAGCAA ACA TGGCTGC TTTACTGCGTCACAA VFMJ11_1896 2018000 - 2016543 - | protein VV1_0039 TERM 2326 2018100 - 2018073 - H 100 -16.4 -5.4387 | opp_overlap 2018073 ACAGAAATGAAAAAA GCCGCACTAACC ATAA GGTTAATGCGGC TTTTCCAATTTGGCG TERM 2327 2018073 - 2018100 + H 100 -14.2 -4.24002 | opp_overlap 2018073 ACAGAAATGAAAAAA GCCGCACTAACC ATAA GGTTAATGCGGC TTTTCCAATTTGGCG VFMJ11_1898 2018454 - 2019311 + | bifunctional protein FolD TERM 2328 2019340 - 2019360 + F 100 -9.7 -5.4251 | opp_overlap 2019337 2019331 2019330 2019340 CAAAACTATCAATTA GCGAGCAAT TTT ACTGCTCGC TTTTTTATATCTGCG TERM 2329 2019360 - 2019340 - f 84 -11.9 -2.84344 | opp_overlap 2019340, overlap 2019337 2019331 2019330 CAAAACTATCAATTA GCGAGCAAT TTT ACTGCTCGC TTTTTTATATCTGCG TERM 2330 2020925 - 2020913 - g 71 -6.3 -4.1466 | opp_overlap 2020901 ACCGAATTCTTAAAA GGATT CTT AATCC CTAAATATGTCGAGT VFMJ11_1899 2019497 - 2021431 + | PrkA AAA TERM 2331 2022013 - 2022003 - g 71 -6.8 -4.05069 | opp_overlap 2022012 CAAAAAATAACAGAA TGGG AAA CCCA TCGAGCAGGTTATCA VFMJ11_1900 2021562 - 2022833 + | protein VV1_2091 TERM 2332 2023255 - 2023265 + G 70 -5.4 -4.38503 | overlap 2023242 2023248 TGGACAGACGCCAGT TCGA TTG TCGA TTATTTATTGTTTGC VFMJ11_1901 2022844 - 2024361 + | stage V sporulation protein R TERM 2333 2024422 - 2024397 - T 100 -16.3 -5.27206 | opp_overlap 2024397 TATACATAACAAAAA GCCTTGAGGTA TCAC TACCTCAAGGC TTTATTATATCAATC TERM 2334 2024397 - 2024422 + T 100 -16.3 -4.39998 | opp_overlap 2024397 TATACATAACAAAAA GCCTTGAGGTA TCAC TACCTCAAGGC TTTATTATATCAATC VFMJ11_1902 2026687 - 2024453 - | isocitrate dehydrogenase, NADP-dependent TERM 2335 2024635 - 2024647 + g 70 -3.3 -4.99043 | AACCAAAGTAAGTTT GAAGC TCT GCATC TTTTGTTTGTGCAGC TERM 2336 2024718 - 2024740 + g 85 -8.4 -4.42976 | opp_overlap 2024721 CCACGGTTGTCTAAC TCACCGACAC GAC GTGATGGTGA TTTATTGGTTTCTAA VFMJ11_1903 2026892 - 2027512 + | ribosomal large subunit pseudouridine synthase E VFMJ11_1904 2027615 - 2027788 + | lipoprotein, putative TERM 2337 2027808 - 2027835 + T 95 -8.5 -5.31519 | opp_overlap 2027808 TTACTTTATGAAAAA GGCCTGATAGT TCTAAC ACTATCAAGCC TTTTTATTTCAATAT TERM 2338 2027835 - 2027808 - T 100 -10.7 -4.7373 | opp_overlap 2027808 TTACTTTATGAAAAA GGCCTGATAGT TCTAAC ACTATCAAGCC TTTTTATTTCAATAT VFMJ11_1905 2028154 - 2027882 - | hypothetical protein VFMJ11_1906 2028441 - 2030060 + | methyl-accepting chemotaxis protein TERM 2339 2030115 - 2030067 - T 75 -9 -3.41203 | gap 1, opp_overlap 2030068 2030070, overlap 2030068 AAAATCTAATATTAA TTGTTTCTC-GCCATCAATGCTC ACAA GTGCATTGATGGCTGAAATACAT TCTCTATACAAAAAG TERM 2340 2030114 - 2030068 - T 86 -12.5 -2.63637 | gap 1, opp_overlap 2030068 2030070, overlap 2030067 AAATCTAATATTAAT TGTTTCTC-GCCATCAATGCTC ACAA GTGCATTGATGGCTGAAATACA TTCTCTATACAAAAA TERM 2341 2030068 - 2030114 + T 86 -10.3 -3.58726 | gap 1, opp_overlap 2030068 2030067, overlap 2030070 AAATCTAATATTAAT TGTTTCTC-GCCATCAATGCTC ACAA GTGCATTGATGGCTGAAATACA TTCTCTATACAAAAA TERM 2342 2030070 - 2030110 + T 78 -10.6 -2.64877 | gap 1, opp_overlap 2030068 2030067, overlap 2030068 ATCTAATATTAATTG TTTCTCGCCATCAATGCTC ACAA GTGCATTGATGGCT-GAAA TACATTCTCTATACA VFMJ11_1907 2030472 - 2030137 - | tellurite resistance protein TehB VFMJ11_1908 2031291 - 2030518 - | ferredoxin--NADP reductase VFMJ11_1909 2032450 - 2031305 - | nitric oxide reductase FlRd-NAD(+) reductase VFMJ11_1910 2033952 - 2032462 - | anaerobic nitric oxide reductase flavorubredoxin TERM 2343 2033197 - 2033187 - G 89 -5.4 -5.39755 | opp_overlap 2033187 2033185 TAGAATCATAAAAAA TCGT AAT ACGA TCTTCTTGGTAATTA TERM 2344 2034683 - 2034662 - g 76 -6.7 -4.4017 | TCAATCGGGAGAAAA CTCAAATAA CTCA TCATTTGAG GGATCATCTGATAAT VFMJ11_1911 2034141 - 2035679 + | anaerobic nitric oxide reductase transcription regulator NorR trmU 2035796 - 2036920 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase VFMJ11_1913 2036932 - 2037549 + | protein /y1798/ TERM 2345 2037585 - 2037554 - f 76 -4.4 -5.08824 | opp_overlap 2037559, overlap 2037559 CTCGCATTTAAAAAA TTAAAGCCTACTTG ATTT CAGGTAGGCTTTTT CCTTTAACATTTATA TERM 2346 2037559 - 2037580 + F 100 -10.9 -4.99134 | opp_overlap 2037554 2037559 ATTTAAAAAATTAAA GCCTACTTG ATTT CAGGTAGGC TTTTTCCTTTAACAT TERM 2347 2037580 - 2037559 - f 89 -8.7 -4.43669 | opp_overlap 2037559, overlap 2037554 ATTTAAAAAATTAAA GCCTACTTG ATTT CAGGTAGGC TTTTTCCTTTAACAT TERM 2348 2038501 - 2038484 - g 85 -4.1 -5.64421 | opp_overlap 2038484 ACTTCAAACAAAAAA CGATTGC TGGT GAAATCG GTTCTTCAACAATGC TERM 2349 2038623 - 2038603 - g 71 -3.9 -4.9218 | CACCTAGCACAAAAA CTGCCTG TATCTCG CTGGCAG CGTGACCTAACTGAC purB 2037619 - 2038989 + | adenylosuccinate lyase TERM 2350 2039090 - 2039053 - T 100 -9.9 -5.23396 | opp_overlap 2039053 AACAAGCAATAAAAA GCCCTGCGATACTCTTT ATAC AGAGACCATCACAGGGC TTAAATTTATACACT VFMJ11_1915 2039541 - 2039113 - | lipoprotein, putative TERM 2351 2039423 - 2039452 + g 73 -5.8 -4.49337 | gap 1, overlap 2039450 CTTTCTAATTTTGAT TGCATGCTATCCA CGGCT TGGTTAGC-TGCA TTTTGTGCCTTATCA TERM 2352 2041650 - 2041640 - g 75 -5.4 -4.78839 | AATTGCACAAGAAAA TCTC AAA GAGA TCAGCAGTGCAATTC VFMJ11_1916 2039781 - 2041874 + | methyl-accepting chemotaxis protein TERM 2353 2041870 - 2041856 - f 78 -7.2 -4.34557 | opp_overlap 2041851, overlap 2041851 AACTGAAAAATTAAA TGAGTT CAA AACTCA ATAAAATTTAAGTAA TERM 2354 2041931 - 2041905 - f 100 -11.6 -5.52023 | opp_overlap 2041905 AGTAGTAATAAAAAA GCCATGCAATCC ATT GAATTGCGTGGC TTTTTTCGTTCCTAA TERM 2355 2041905 - 2041931 + F 100 -11.6 -5.30155 | opp_overlap 2041905 AGTAGTAATAAAAAA GCCATGCAATCC ATT GAATTGCGTGGC TTTTTTCGTTCCTAA VFMJ11_1917 2042132 - 2043109 + | tricarboxylic transport protein TctC TERM 2356 2043578 - 2043591 + G 72 -3.1 -5.10665 | TAGCGACCAGTTTCT TCTTG CTTG CAGGA TTTTATTTATTGGGT VFMJ11_1918 2043178 - 2043723 + | tricarboxylic transport TctB TERM 2357 2043908 - 2043934 + G 70 -5.8 -4.36554 | overlap 2043901 ATGGGTTGGATCCTG CGTCAGGCATGA TCT TAATGGCTGGCG TTTATTATGGTGCTG VFMJ11_1919 2043742 - 2045268 + | TctA protein TERM 2358 2045297 - 2045330 + F 79 -9.8 -3.31537 | opp_overlap 2045300 2045301 2045303, overlap 2045301 CGAATTGAAGTTAAC TAAGCACCAATACT AAGAAA GGTATTGGTGTTTA TTCCTCTGCTGTCAT TERM 2359 2045301 - 2045326 + F 83 -8.4 -4.30177 | opp_overlap 2045301 2045300 2045303, overlap 2045297 TTGAAGTTAACTAAG CACCAATACT AAGAAA GGTATTGGTG TTTATTCCTCTGCTG VFMJ11_1920 2045397 - 2046593 + | putative ATP-dependent RNA helicase RhlE TERM 2360 2046667 - 2046687 + T 93 -7.6 -5.61689 | opp_overlap 2046667 CTAAAATACGAAAAA GCTCATGC AAATA GTATGAGC TTTTTTATTGGTTTT TERM 2361 2046687 - 2046667 - T 77 -5.4 -4.98616 | opp_overlap 2046667 CTAAAATACGAAAAA GCTCATGC AAATA GTATGAGC TTTTTTATTGGTTTT VFMJ11_1921 2047597 - 2046710 - | serine protease ybaK 2048094 - 2047624 - | YbaK/ebsC protein TERM 2362 2048047 - 2048057 + g 78 -4 -5.31158 | overlap 2048039 ATGATACTCAAGCAC TTGA TGT TCAA TTTTTGCTTTTTTTA VFMJ11_1923 2048792 - 2048118 - | transcriptional regulatory protein CitT VFMJ11_1924 2050420 - 2048822 - | sensor kinase DpiB (Sensor kinase citA) TERM 2363 2050520 - 2050541 + H 70 -3.8 -4.85599 | opp_overlap 2050511 2050524 ATCACACCTTATAAA TAATTCAG TCAATT CTGAGTTA TTTTTATGGAATAGA TERM 2364 2051778 - 2051768 - g 70 -5.4 -4.32678 | GCTCCAAATAAAGAA GCAT TAG ATGC AGGTCTTGATAACTT fhs 2050640 - 2052388 + | formate--tetrahydrofolate ligase VFMJ11_1926 2052492 - 2052992 + | protein VV1_2093 TERM 2365 2053019 - 2053036 + T 100 -9.1 -5.24531 | TGAAACCAATTTGAA TCCTCGC CTTT GCGGGGA TTTTTTATACCCGCT TERM 2366 2053105 - 2053082 - T 100 -14 -6.08342 | opp_overlap 2053077 TAATAAACAAAAAAA TCCTCACTGA CGGA TCAGTGAGGA TTGAGCTTCTAACCT VFMJ11_1927 2054246 - 2053185 - | outer membrane protein C VFMJ11_1928 2054744 - 2055553 + | ribosomal RNA large subunit methyltransferase A VFMJ11_1929 2055814 - 2056416 + | hypothetical protein VFMJ11_1930 2057766 - 2056399 - | H+/Cl- exchange transporter ClcA TERM 2367 2057975 - 2057963 - R 72 -4.9 -4.65182 | opp_overlap 2057963 TATAAATCAAATAAA TAACT CCT AGTTA TTCTGTTACAAAACA TERM 2368 2058022 - 2058047 + r 100 -13.4 -3.60296 | opp_overlap 2058022 ATGAGATATAAAAAA CCCGCAGAAT GGTGTA ATTCTGCGGG TTTCAAATAAAAGTA TERM 2369 2058047 - 2058022 - R 100 -13.4 -5.43414 | opp_overlap 2058022 ATGAGATATAAAAAA CCCGCAGAAT GGTGTA ATTCTGCGGG TTTCAAATAAAAGTA TERM 2370 2058104 - 2058088 - R 77 -8.7 -3.5834 | overlap 2058086 AACAAAAAATTAATA CAAACGG CTA CCGTCTG GACGAGAGCGTAGTA msbB 2059023 - 2058082 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase VFMJ11_1932 2059102 - 2059527 + | HIT family hydrolase TERM 2371 2059549 - 2059569 + T 70 -8.3 -3.29704 | opp_overlap 2059549, overlap 2059547 2059545 ATAAGAAACAAAAAA GGCAGTG ATCTCTA CACTGCC TCTATTTACTAACAC TERM 2372 2059569 - 2059549 - T 100 -8.3 -5.82036 | opp_overlap 2059549 2059547 2059545 ATAAGAAACAAAAAA GGCAGTG ATCTCTA CACTGCC TCTATTTACTAACAC VFMJ11_1933 2059861 - 2059601 - | YfcL protein VFMJ11_1934 2060399 - 2059869 - | transporting ATPase TERM 2373 2061072 - 2061058 - g 76 -3.6 -5.21709 | GTGTACACCAAAAAA TTCTAA ATA TCAGAA CACACAAACCAAAAG VFMJ11_1935 2060589 - 2061122 + | conserved membrane protein, SapB/MtgC family TERM 2374 2061142 - 2061119 - f 79 -4.6 -5.27206 | opp_overlap 2061119 TAGACATAATAAAAA CTAATCCGAA TTAA TTCAGAATAG TTTTTTTCATTCGTC TERM 2375 2061119 - 2061142 + F 78 -2.4 -5.65513 | opp_overlap 2061119 TAGACATAATAAAAA CTAATCCGAA TTAA TTCAGAATAG TTTTTTTCATTCGTC VFMJ11_1936 2061228 - 2061869 + | inner membrane protein YicG TERM 2376 2061912 - 2061944 + T 100 -11.4 -5.38054 | opp_overlap 2061912 GAGTAAGATCAGAAA GAGCCAGATTGAAT ATAAC GTCCAATCTGGCTC TTTTTATTTATGCCA TERM 2377 2061944 - 2061912 - T 100 -12.9 -4.07455 | opp_overlap 2061912 GAGTAAGATCAGAAA GAGCCAGATTGAA TATAACG TCCAATCTGGCTC TTTTTATTTATGCCA aroC 2063119 - 2062034 - | chorismate synthase VFMJ11_1938 2063519 - 2063632 + | hypothetical protein TERM 2378 2063657 - 2063638 - T 100 -10 -5.73339 | opp_overlap 2063638 ACAAGCATAAAAAAA GCCCGATG TTTC CATCAGGC TTTCATTTAGATTAA TERM 2379 2063638 - 2063657 + T 78 -7.8 -4.10672 | opp_overlap 2063638 ACAAGCATAAAAAAA GCCCGATG TTTC CATCAGGC TTTCATTTAGATTAA prmB 2064611 - 2063679 - | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific VFMJ11_1940 2064664 - 2065197 + | protein VV1_1979 TERM 2380 2065230 - 2065203 - T 100 -10.6 -5.76633 | opp_overlap 2065203 TGATAGATAAAAAAA GATCCCACAGCC ACTC AGCTCTGGGATC TTTTTTATTTCAGGT TERM 2381 2065203 - 2065230 + T 100 -9.9 -5.64421 | opp_overlap 2065203 TGATAGATAAAAAAA GATCCCACAGC CACTCA GCTCTGGGATC TTTTTTATTTCAGGT sixA 2065716 - 2065261 - | phosphohistidine phosphatase SixA TERM 2382 2066193 - 2066177 - g 77 -5.1 -4.96848 | opp_overlap 2066188, overlap 2066179 CTTGGTACACAAAAA TACCCAA AAG TTGGGGA ATTCCACTCTTTCAT TERM 2383 2066191 - 2066179 - g 75 -7.7 -4.11141 | opp_overlap 2066188, overlap 2066177 TGGTACACAAAAATA CCCAA AAG TTGGG GAATTCCACTCTTTC TERM 2384 2067344 - 2067334 - g 73 -5.4 -4.53439 | overlap 2067325 2067324 TGAAACCCAAATAAA GACT TGG AGTC ATGCTGAATTGCACC VFMJ11_1942 2065976 - 2068753 + | insulin-degrading enzyme TERM 2385 2068803 - 2068779 - T 100 -9.3 -4.85599 | opp_overlap 2068782, overlap 2068782 TTCACGTCATAAAAA TAAGGCCATCA CAA CGATGGCCTTT TAATTACATTGATAT TERM 2386 2068782 - 2068800 + T 100 -10.3 -4.45664 | opp_overlap 2068779 2068782 ACGTCATAAAAATAA GGCCATC ACAAC GATGGCC TTTTAATTACATTGA TERM 2387 2068800 - 2068782 - T 100 -11 -4.53475 | opp_overlap 2068782, overlap 2068779 ACGTCATAAAAATAA GGCCATCA CAA CGATGGCC TTTTAATTACATTGA fadJ 2070920 - 2068821 - | fatty oxidation complex, alpha subunit FadJ fadI 2072248 - 2070920 - | acetyl-CoA C-acyltransferase FadI TERM 2388 2071150 - 2071164 + g 76 -7.2 -4.24002 | opp_overlap 2071149 ATTCTCTAGCAAATT TGTTTG AAG CAAACA TTTTCACATTTGAAA TERM 2389 2072491 - 2072474 - H 100 -9.9 -6.06723 | TTTGGTAAAAAAAAA CCACATC AGTC GATGTGG TCAGAATAAAAAACA TERM 2390 2072525 - 2072505 - H 76 -2.6 -5.55769 | GGTCAGAATAAAAAA CAATTAAC GAGTA GCCAATTG TAAAAATCAGTTTCA TERM 2391 2072723 - 2072735 + H 84 -6.3 -5.19212 | AACCCACCTTCCGTT CATCA AAC TGATG TTTTTTCCTCATCAT TERM 2392 2072933 - 2072918 - H 77 -3.3 -5.47914 | opp_overlap 2072920 AAAAAGCACAAAAAA TAGAG TTAAAG CTCTA TTAACATCAATTAGA VFMJ11_1945 2073130 - 2074383 + | long-chain fatty acid transport protein TERM 2393 2074430 - 2074413 - f 75 -6.9 -4.13945 | opp_overlap 2074413 AGTGTCAGTTCAAAA GGTCAGC GTAT GCTGGCC TTTTTTGATCTTGAA TERM 2394 2074413 - 2074430 + F 100 -9.1 -5.27779 | opp_overlap 2074413 AGTGTCAGTTCAAAA GGTCAGC GTAT GCTGGCC TTTTTTGATCTTGAA VFMJ11_1946 2074844 - 2076136 + | long-chain fatty acid transport protein TERM 2395 2076157 - 2076176 + F 100 -12.2 -5.4756 | opp_overlap 2076157 AACCATTTATATTAA GGCCTCTA ATTT TAGAGGCC TTTTTTATTGAACTT TERM 2396 2076176 - 2076157 - f 89 -12.2 -3.28684 | opp_overlap 2076157 AACCATTTATATTAA GGCCTCTA ATTT TAGAGGCC TTTTTTATTGAACTT VFMJ11_1947 2076297 - 2076902 + | hypothetical membrane spanning protein VFMJ11_1948 2077714 - 2076971 - | lipoprotein VacJ TERM 2397 2077892 - 2077866 - R 100 -15.9 -5.35459 | opp_overlap 2077866 ATAGATTATAAAAAA CGGGCAGAAGC GCTAT GCCTCTGCCCG TTCTAGTATGACACT TERM 2398 2077866 - 2077892 + r 100 -14.4 -3.4678 | opp_overlap 2077866 ATAGATTATAAAAAA CGGGCAGAAGCG CTA TGCCTCTGCCCG TTCTAGTATGACACT VFMJ11_1949 2079134 - 2077917 - | cytochrome c-type biogenesis protein CcmI VFMJ11_1950 2079646 - 2079131 - | cytochrome c-type biogenesis protein CcmH VFMJ11_1951 2080197 - 2079646 - | thiol:disulfide interchange protein TlpA ccmF_2 2082159 - 2080201 - | cytochrome c-type biogenesis protein CcmF VFMJ11_1953 2082641 - 2082156 - | cytoChrome c-type biogenesis protein CcmE VFMJ11_1954 2082844 - 2082638 - | hypothetical protein TERM 2399 2082786 - 2082768 - G 74 -3.7 -5.03713 | overlap 2082770 AATAATGAAAGAAAA GTGGCAC CAAAT GCGCCCC ATACATAAGTGGCAT VFMJ11_1955 2083620 - 2082868 - | heme chaperone heme-lyase TERM 2400 2083143 - 2083160 + g 71 -6.9 -4.0274 | opp_overlap 2083143 2083142 CAATCGCAAGAATAC CTGCTGC TCGT GCAGCCG TTCTTTGATCATCAA ccmB 2084332 - 2083664 - | heme exporter protein CcmB ccmA 2084947 - 2084333 - | heme ABC exporter, ATP-binding protein CcmA TERM 2401 2085193 - 2085176 - R 93 -5.5 -5.96219 | opp_overlap 2085176 TATGGATAAAAAAAA GCCCCTC AAAT AAGGAGC TCTTAAATATTAACT VFMJ11_1958 2085689 - 2085228 - | ATPase involved in DNA repair TERM 2402 2085516 - 2085527 + g 73 -2.2 -5.31855 | ACGAAACTCTACAAA TTGC TTTT GCAG TTTTTGTTGTTCATC TERM 2403 2085572 - 2085593 + g 74 -6 -4.4634 | ATTGCTCTTGTGATT CAGTTAAT TGTTGC ATTAACTG TTTATTCTTACGGTT VFMJ11_1959 2086183 - 2085689 - | chemotaxis protein CheW VFMJ11_1960 2087270 - 2086212 - | CheW domain protein VFMJ11_1961 2088037 - 2087270 - | chromosome partitioning protein ParA VFMJ11_1962 2089176 - 2088046 - | chemotaxis response regulator protein-glutamate methylesterase TERM 2404 2088979 - 2089012 + g 70 -9.7 -2.71503 | gap 1, overlap 2088975 2088974 2089008 CATGATCTCTCGGAC TGCTGAGATGCC-GTC CAT GACTGGCATCTCAATA TCCATTGTTATTACA VFMJ11_1963 2091384 - 2089192 - | chemotaxis protein CheA TERM 2405 2090930 - 2090913 - G 70 -5.5 -4.33928 | opp_overlap 2090913 2090909, overlap 2090909 TAGTCGAAACAGAAA CCTCTTC TACA GAAGGGG TTACTTCAATTACTG VFMJ11_1964 2092110 - 2091394 - | chemotaxis protein CheZ VFMJ11_1965 2092522 - 2092142 - | chemotaxis protein CheY VFMJ11_1966 2093290 - 2092559 - | RNA polymerase sigma factor for flagellar operon (Sigma-F factor)(Sigma-28) VFMJ11_1967 2094173 - 2093283 - | flagellar biosynthesis protein FlhG flhF 2095648 - 2094170 - | flagellar biosynthetic protein FlhF flhA 2097775 - 2095682 - | flagellar biosynthesis protein FlhA VFMJ11_1970 2098083 - 2098715 + | type IV pilus assembly protein PilZ TERM 2406 2098706 - 2098731 + T 84 -6.4 -5.17576 | opp_overlap 2098710 TCTTAAAGGCTGGGA TAAACAATAA AGTAGG TTATTGTTTA TTTTTTCAATTCATC flhB 2099859 - 2098729 - | flagellar biosynthetic protein FlhB fliR 2100687 - 2099905 - | flagellar biosynthetic protein FliR fliQ 2100994 - 2100725 - | flagellar biosynthetic protein FliQ VFMJ11_1974 2101873 - 2101004 - | flagellar biosynthesis protein TERM 2407 2101624 - 2101609 - G 74 -6.2 -4.37711 | opp_overlap 2101608 2101618 TCATTAAACCTAAAA TCTGTA AGTT TACAGA GTAATCTTCACCGCC TERM 2408 2101853 - 2101835 - G 100 -12.4 -4.32951 | AAAGAAGAGTGAAAA TGCCGCCA AAA CGGCGGCA ATAAAATTAGTTTTT VFMJ11_1975 2102246 - 2101860 - | flagellar protein FliO TERM 2409 2102226 - 2102215 - G 70 -5.8 -4.46493 | overlap 2102188 GCAAATAGAGGAAAA GGCA CTAA TGCC AATAACCATAGCTTT VFMJ11_1976 2102659 - 2102270 - | flagellar motor switch phosphatase FliY fliM 2103716 - 2102682 - | flagellar motor switch protein FliM fliL_1 2104209 - 2103724 - | flagellar basal body-associated protein FliL VFMJ11_1979 2105524 - 2104274 - | flagellar hook-length control protein TERM 2410 2105166 - 2105182 + g 76 -2.2 -5.40004 | opp_overlap 2105162, overlap 2105151 2105167 GATTCATCAGATGAC TCTTCG TCACC CGAAGC TTTTTTACTTTCATC TERM 2411 2105534 - 2105550 + r 70 -3.7 -5.00616 | GCTCATAGTATGTTC TCTACAT TGA GTGTGGA TTTTTTGACGAGCGC fliJ 2106139 - 2105696 - | flagellar export protein FliJ TERM 2412 2105760 - 2105772 + g 76 -3.4 -5.29782 | ATCATTTTTTGCTCT TGCT TATCC AGCA TTTTTTGTCGCTCTG fliI 2107469 - 2106150 - | flagellar protein export ATPase FliI TERM 2413 2106305 - 2106315 + g 73 -5.4 -4.57073 | opp_overlap 2106303 ACGCACCAATCGACA CCAA GTC TTGG TTTTTACGGCAAGTA VFMJ11_1982 2108266 - 2107469 - | flagellar assembly protein TERM 2414 2108195 - 2108205 + g 89 -5.4 -5.37345 | opp_overlap 2108184, overlap 2108186 2108184 GTAATCTGGGGATTC CCAA ATA TTGG TTTTTTGTAGTTCAC TERM 2415 2108308 - 2108338 + r 87 -9.9 -4.00868 | opp_overlap 2108308 ATTTAGAAAGAATAA CGGCTATTTCA ATCTAATTA TGAAATAGCCG TTTAATTATAACTCA TERM 2416 2108338 - 2108308 - R 93 -9.9 -4.16305 | opp_overlap 2108308 ATTTAGAAAGAATAA CGGCTATTTCA ATCTAATTA TGAAATAGCCG TTTAATTATAACTCA TERM 2417 2108376 - 2108366 - R 71 -5.4 -4.62054 | overlap 2108375 TCAATGAAATGAAAA CGTA TTA TACG AATTCATCCGCACCG fliG 2109422 - 2108370 - | flagellar motor switch protein FliG TERM 2418 2109358 - 2109386 + g 70 -5.4 -4.35958 | opp_overlap 2109358 TCAGAGCCTGATAAT GAAGAAAGATCA AATTC TGGTGTTTCTTC TTCTTTATTTCCTGC fliF 2111148 - 2109415 - | flagellar M-ring protein FliF TERM 2419 2110822 - 2110812 - G 70 -5.4 -4.41047 | opp_overlap 2110812 2110810 AGGCTGGAACTAAAA TGGT ATT ACCA TCTAGTTTATATTCT fliE 2111477 - 2111166 - | flagellar hook-basal body complex protein FliE TERM 2420 2111379 - 2111396 + g 70 -5.6 -4.46404 | CGCAAACATAGCACT GAAGTC CGCACC GACTTC TTTTCCTGTTACTTG TERM 2421 2111403 - 2111440 + g 75 -9.9 -3.3941 | overlap 2111406 2111431 ACCGACTTCTTTTCC TGTTACTTGACGCGTTG TATT TGACGCGTCAAGCATCA TTGCTTGCATCTCGT TERM 2422 2111406 - 2111437 + g 73 -10.2 -2.85337 | overlap 2111403 2111431 GACTTCTTTTCCTGT TACTTGACGCGTTG TATT TGACGCGTCAAGCA TCATTGCTTGCATCT VFMJ11_1986 2113011 - 2111578 - | two-component response regulator VFMJ11_1987 2114076 - 2113015 - | FlrB; two-component sensor kinase TERM 2423 2114135 - 2114099 - R 93 -9.7 -4.17048 | gap 2, opp_overlap 2114098 2114099 2114104, overlap 2114104 TTCCCGCCAAAACAA CAAAAGGGCTGATGCAT TTTAC ATGC--CAGCCCTTTTG GTATTTATTATCAAT TERM 2424 2114099 - 2114135 + r 76 -9.7 -2.8541 | gap 2, opp_overlap 2114099 2114104, overlap 2114098 2114104 TTCCCGCCAAAACAA CAAAAGGGCTGATGCAT TTTAC ATGC--CAGCCCTTTTG GTATTTATTATCAAT TERM 2425 2114130 - 2114104 - R 73 -3.8 -5.093 | gap 2, opp_overlap 2114104 2114099 2114098, overlap 2114099 GCCAAAACAACAAAA GGGCTGATGCAT TTTAC ATGC--CAGCCC TTTTGGTATTTATTA VFMJ11_1988 2115716 - 2114235 - | FlrA; sigma-54-dependent transcriptional activator TERM 2426 2115846 - 2115812 - R 72 -9.5 -2.62062 | gap 1, opp_overlap 2115816 2115818, overlap 2115811 2115810 2115815 2115818 ATAAGAAAAATAAGG CAACTATGACTGTCTA CTTA TCGACAGTCAT-GTTG TAAATGAGAGGTTAG TERM 2427 2115818 - 2115841 + r 70 -8.2 -3.24924 | opp_overlap 2115818 2115815 2115812 2115811 2115810, overlap 2115816 AAAATAAGGCAACTA TGACTGTCTA CTTA TCGACAGTCA TGTTGTAAATGAGAG fliS 2116315 - 2115905 - | flagellar protein FliS VFMJ11_1990 2116621 - 2116331 - | FlaI VFMJ11_1991 2118623 - 2116653 - | flagellar hook-associated protein TERM 2428 2117001 - 2117011 + g 81 -5.4 -5.16841 | opp_overlap 2117001 TGTTGAAATACCAAG CTCT ATC AGAG TTTTTATTCCTGTAG VFMJ11_1992 2119067 - 2118648 - | flagellar protein FlaG TERM 2429 2119120 - 2119094 - R 95 -8.8 -5.27779 | opp_overlap 2119093 2119094 2119096 CCTAATACGAAAAAA GACAGCAAGA GGAGCGG TCCTGCTGTC ATATTTCAGTAAGTG VFMJ11_1993 2120327 - 2119191 - | A-type flagellin VFMJ11_1994 2121700 - 2120573 - | A-type flagellin TERM 2430 2120716 - 2120735 + g 71 -5 -4.50943 | TTTGGCTGTTAGACG CATTCACG TTCT CGTTAATG TTTTCTAAGTTGTTA TERM 2431 2122039 - 2122022 - R 100 -10.5 -6.02919 | opp_overlap 2122022 TTATAAACAAAAAAA GCCGAGG CAAG CCCCGGC TTTGGCATAGTGTGA TERM 2432 2122022 - 2122039 + r 73 -8.3 -3.63068 | opp_overlap 2122022 TTATAAACAAAAAAA GCCGAGG CAAG CCCCGGC TTTGGCATAGTGTGA VFMJ11_1995 2123229 - 2122096 - | flagellin subunit C TERM 2433 2123580 - 2123596 + r 89 -10.9 -3.56568 | opp_overlap 2123580 TTAAACGAAAAAAAA CCAGCAA TCA TTGCTGG TTTAAAAAATAGTTA TERM 2434 2123596 - 2123580 - R 100 -10.9 -6.02546 | opp_overlap 2123580 TTAAACGAAAAAAAA CCAGCAA TCA TTGCTGG TTTAAAAAATAGTTA VFMJ11_1996 2124761 - 2123628 - | flagellin VFMJ11_1997 2125196 - 2124819 - | hypothetical protein VFMJ11_1998 2126588 - 2125449 - | A-type flagellin TERM 2435 2127171 - 2127152 - R 95 -8.6 -5.76237 | opp_overlap 2127152 2127150 TATAGAAATAAAAAA GCCTAACA TTAC TGCTAGGC TCTCTATTTTATTTA flgL 2128390 - 2127197 - | flagellar hook-associated protein 3 flgK 2130288 - 2128408 - | flagellar hook-associated protein FlgK TERM 2436 2130530 - 2130491 - R 100 -9.4 -4.86621 | opp_overlap 2130498, overlap 2130498 AGCGGCAACCAAAAA CAAAAAATCCTGCCGCTT TTTC AAGAGACAGGATTTCATG TTAGTGTTTGTAAAT TERM 2437 2130523 - 2130498 - R 100 -8.3 -5.95286 | opp_overlap 2130498, overlap 2130491 ACCAAAAACAAAAAA TCCTGCCGCTT TTTC AAGAGACAGGA TTTCATGTTAGTGTT flgJ 2131559 - 2130555 - | flagellar rod assembly protein/muramidase FlgJ TERM 2438 2131621 - 2131639 + r 86 -10.3 -3.61709 | opp_overlap 2131621, overlap 2131617 AATGCCAAAAAAAAA CGCACCT ACTAG AGGTGCG TTGATTGTCTTTTAA TERM 2439 2131639 - 2131621 - R 100 -10.3 -6.10489 | opp_overlap 2131621 2131617 AATGCCAAAAAAAAA CGCACCT ACTAG AGGTGCG TTGATTGTCTTTTAA flgI 2132766 - 2131669 - | flagellar P-ring protein FlgI flgH 2133584 - 2132793 - | flagellar L-ring protein FlgH flgG 2134385 - 2133597 - | flagellar basal-body rod protein FlgG flgF 2135189 - 2134440 - | flagellar basal-body rod protein FlgF TERM 2440 2135377 - 2135356 - R 100 -10.2 -5.00884 | opp_overlap 2135356 ATTCTGGGTAAAAAA TTGCCGTC ACATAA GACGGCAA TTTTAAGATATTGGA TERM 2441 2135356 - 2135377 + r 100 -10.2 -4.1964 | opp_overlap 2135356 ATTCTGGGTAAAAAA TTGCCGTC ACATAA GACGGCAA TTTTAAGATATTGGA VFMJ11_2006 2136702 - 2135404 - | flagellar hook protein TERM 2442 2136536 - 2136548 + g 74 -4.8 -4.81249 | GTTGTTTGTGCACCA CCAC CTGTT GTGG TTTTTGCATTTGAGA TERM 2443 2136815 - 2136860 + r 82 -7.8 -4.47551 | gap 2, opp_overlap 2136815 2136816, overlap 2136816 2136816 ATTAAATGATGAAAA TGG-GAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGCCC TTTTATGCCTTACCT TERM 2444 2136816 - 2136859 + r 87 -11.3 -3.27808 | gap 2, opp_overlap 2136816 2136815, overlap 2136815 2136816 TTAAATGATGAAAAT GG-GAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGCC CTTTTATGCCTTACC TERM 2445 2136816 - 2136858 + r 82 -11.5 -2.56203 | gap 1, opp_overlap 2136816 2136815, overlap 2136816 2136815 TTAAATGATGAAAAT GGGAGTATTCAG-GCAGCGA TAAG TTGCTGCACTGAATATTCGC CCTTTTATGCCTTAC VFMJ11_2007 2137573 - 2136863 - | flagellar basal body rod modification protein TERM 2446 2137282 - 2137267 - G 70 -9 -3.24902 | opp_overlap 2137264 GAACATCACGACCAA CAAGCG AAGA CGCTTG TAATGCTTGGTTAGA flgC 2138005 - 2137589 - | flagellar basal-body rod protein FlgC flgB 2138403 - 2138008 - | flagellar basal-body rod protein FlgB TERM 2447 2138551 - 2138576 + r 74 -9.1 -3.14136 | opp_overlap 2138557, overlap 2138557 TAGATTACAGGCACA AAAAAAGCGAC CTAA GTCGCTTTTTG TTCAATAATTACTCA TERM 2448 2138570 - 2138557 - R 93 -8.1 -5.65177 | opp_overlap 2138551 2138557 ACAGGCACAAAAAAA GCGAC CTAA GTCGC TTTTTGTTCAATAAT TERM 2449 2138557 - 2138570 + r 90 -8.1 -5.11063 | opp_overlap 2138557, overlap 2138551 ACAGGCACAAAAAAA GCGAC CTAA GTCGC TTTTTGTTCAATAAT cheR 2139426 - 2138599 - | CheR methyltransferase, SAM binding domain VFMJ11_2011 2140430 - 2139510 - | CheV TERM 2450 2141082 - 2141062 - g 81 -2.6 -5.63504 | opp_overlap 2141077 2141078 AACTGTAGAAAAAAA CGACAT CTGCATGGT ATGTCG CAACGACAGTGTTAT VFMJ11_2012 2140619 - 2141254 + | flagellar basal body P-ring biosynthesis protein VFMJ11_2013 2141470 - 2141781 + | negative regulator of flagellin synthesis FlgM VFMJ11_2014 2141828 - 2142256 + | FlgN TERM 2451 2142291 - 2142312 + T 95 -6.6 -5.82281 | opp_overlap 2142291, overlap 2142288 2142286 CGATTTCTTATCCAA CCGTGTTG TATTTC TAACACGG TTTTTTTCTATCTTT TERM 2452 2142588 - 2142564 - T 100 -17.9 -5.98675 | TACAAAAACAAAAAA GCCCTCGGCAC CAA GTACCGAGGGC AATAGCATTATGTCG VFMJ11_2015 2143073 - 2142642 - | hypothetical protein TERM 2453 2142919 - 2142935 + g 83 -7.3 -4.76644 | TCAACTTTAGATGCT CGCATTG CTC TAATGCG TTTTTCATCGATATT VFMJ11_2016 2143720 - 2143085 - | lipoprotein, putative VFMJ11_2017 2143892 - 2145028 + | hypothetical protein TERM 2454 2145052 - 2145082 + F 93 -7.7 -5.65177 | TCAATCTTTAATCAA TGAGAAACAGTGC CTAGC GTGTTGTTTCTCA TTTTTTTATGACTCT VFMJ11_2018 2145246 - 2146622 + | tetratricopeptide repeat domain protein VFMJ11_2019 2146705 - 2146878 + | hypothetical protein TERM 2455 2146963 - 2146947 - T 100 -9.4 -5.71983 | opp_overlap 2146947 TCAAGCATAAAAAAA CCGCTG AATAA CAGCGG TTTTTATCTAAAATA TERM 2456 2146947 - 2146963 + T 100 -9.4 -4.9792 | opp_overlap 2146947 TCAAGCATAAAAAAA CCGCTG AATAA CAGCGG TTTTTATCTAAAATA gltX 2148412 - 2146988 - | glutamyl-tRNA synthetase TERM 2457 2148573 - 2148533 - R 86 -5.5 -5.63103 | opp_overlap 2148541, overlap 2148541 GTCTAATTAAAAAAA TAGAAAAAGTGGTTAAGCA ACT CGCTCAACCACTTTTAAAA TTCAAAAATTATTTA TERM 2458 2148541 - 2148565 + r 85 -8.6 -4.19238 | opp_overlap 2148533 2148541 AAAAAAATAGAAAAA GTGGTTAAGC AACTC GCTCAACCAC TTTTAAAATTCAAAA TERM 2459 2148565 - 2148541 - R 100 -11.5 -5.44837 | opp_overlap 2148541, overlap 2148533 AAAAAAATAGAAAAA GTGGTTAAGCA ACT CGCTCAACCAC TTTTAAAATTCAAAA VFMJ11_2021 2149379 - 2148582 - | lipoprotein, putative TERM 2460 2149421 - 2149441 + r 77 -9.7 -3.1149 | opp_overlap 2149421, overlap 2149420 TCTTAATGTAAAAAA CGCTGACAA AGT TTGCCAGCG CTTTTAAAGTTAGCT TERM 2461 2149441 - 2149421 - R 100 -11.9 -5.15969 | opp_overlap 2149421 2149420 TCTTAATGTAAAAAA CGCTGACAA AGT TTGCCAGCG CTTTTAAAGTTAGCT VFMJ11_2022 2150563 - 2149472 - | chitoporin TERM 2462 2150931 - 2150914 - R 93 -7 -5.72254 | opp_overlap 2150914 2150913 TTAAATAAGAAAAAA GTGCGA ACTAAG TCGCAC CTATTTTCATTAAAA VFMJ11_2023 2151764 - 2150964 - | lipoprotein, putative TERM 2463 2151806 - 2151826 + r 77 -9.7 -3.1149 | opp_overlap 2151806, overlap 2151805 TCTTAAAGTAAAAAA CGCTGACAA AGT TTGCCAGCG CTTTTAAAGTTAGCT TERM 2464 2151826 - 2151806 - R 100 -11.9 -5.37593 | opp_overlap 2151806 2151805 TCTTAAAGTAAAAAA CGCTGACAA AGT TTGCCAGCG CTTTTAAAGTTAGCT VFMJ11_2024 2152960 - 2151857 - | chitoporin TERM 2465 2153445 - 2153462 + r 86 -8.4 -4.7497 | opp_overlap 2153445 TGACAAATAAAAAAA GGAGCC ATATAA GGCTCC TTTTTAATAACTAAA TERM 2466 2153462 - 2153445 - R 100 -8.4 -6.02919 | opp_overlap 2153445 TGACAAATAAAAAAA GGAGCC ATATAA GGCTCC TTTTTAATAACTAAA ligA 2155494 - 2153488 - | DNA ligase, NAD-dependent TERM 2467 2155538 - 2155552 + r 93 -10 -4.10934 | opp_overlap 2155538, overlap 2155544 2155547 TTAAAATAAAAAAAA GGCTCA TGA TGAGCC TTTCTCATTAGTTCT TERM 2468 2155552 - 2155538 - R 100 -10 -6.34616 | opp_overlap 2155538 2155544 2155547 TTAAAATAAAAAAAA GGCTCA TGA TGAGCC TTTCTCATTAGTTCT zipA 2156563 - 2155586 - | cell division protein ZipA TERM 2469 2156625 - 2156614 - H 82 -3 -5.63517 | CTCTTAAATAAAAAA TAAG AAAG CTTA TATCAACTATCATAT VFMJ11_2027 2156848 - 2157600 + | protein CysZ cysK 2157731 - 2158699 + | cysteine synthase A TERM 2470 2158737 - 2158764 + F 100 -13.6 -3.65514 | opp_overlap 2158728 2158744 2158745, overlap 2158745 AATCAATTTTTTATC CAAAAAAGCCCC TTCT GGGGTTTTTTTG TTGATTTCATTTCCC TERM 2471 2158757 - 2158744 - f 73 -3.7 -5.08824 | opp_overlap 2158737 2158745, overlap 2158745 TTTTTATCCAAAAAA GCCCC TTCT GGGGT TTTTTTGTTGATTTC TERM 2472 2158745 - 2158756 + F 100 -7.2 -5.9003 | opp_overlap 2158745 2158744, overlap 2158737 TTTTATCCAAAAAAG CCCC TTCT GGGG TTTTTTTGTTGATTT VFMJ11_2029 2159020 - 2159277 + | phosphocarrier protein HPr (Histidine-containing protein) TERM 2473 2159742 - 2159705 - g 90 -10.7 -4.21908 | gap 1, opp_overlap 2159707, overlap 2159707 GATGATTATCTAAAA GAGCGTGCTACAGATATC CGC GATATCGGTAGC-CGCTT TGTTAAAAACGCACT TERM 2474 2159707 - 2159740 + G 100 -13.3 -4.15044 | gap 1, opp_overlap 2159707 2159705 TGATTATCTAAAAGA GCGTGCTACAGATATC CGC GATATCGGTAGC-CGC TTTGTTAAAAACGCA TERM 2475 2159740 - 2159707 - g 95 -13.3 -3.70674 | gap 1, opp_overlap 2159707, overlap 2159705 TGATTATCTAAAAGA GCGTGCTACAGATATC CGC GATATCGGTAGC-CGC TTTGTTAAAAACGCA ptsP_2 2159333 - 2161057 + | phosphoenolpyruvate-protein phosphotransferase TERM 2476 2161106 - 2161081 - f 89 -9.1 -4.14764 | opp_overlap 2161083 2161105, overlap 2161083 TTGCAAAGAATTAAA TATAGCCACTA AGTT TAGTGGCTATT TAATATAAACTTTAG TERM 2477 2161104 - 2161083 - f 90 -11.7 -3.66237 | opp_overlap 2161083, overlap 2161081 GCAAAGAATTAAATA TAGCCACTA AGTT TAGTGGCTA TTTAATATAAACTTT TERM 2478 2161083 - 2161104 + F 90 -11.7 -3.85114 | opp_overlap 2161083 2161081 GCAAAGAATTAAATA TAGCCACTA AGTT TAGTGGCTA TTTAATATAAACTTT VFMJ11_2031 2161133 - 2161642 + | pts system N-acetylglucosamine-specific eiicba component TERM 2479 2161682 - 2161711 + T 100 -16.5 -5.09685 | opp_overlap 2161682 TTAAAGACAAAAAAA GGCCGCTGTTTTC TAAA GATAACAGCGGCC TTTTTGTATCTATTC TERM 2480 2161711 - 2161682 - T 100 -16.5 -5.88197 | opp_overlap 2161682 TTAAAGACAAAAAAA GGCCGCTGTTTTC TAAA GATAACAGCGGCC TTTTTGTATCTATTC VFMJ11_2032 2162686 - 2161781 - | melanin biosynthesis protein TyrA VFMJ11_2033 2163161 - 2162769 - | hypothetical protein VFMJ11_2034 2163627 - 2163178 - | come operon protein 3 TERM 2481 2163741 - 2163718 - H 70 -4.6 -4.73108 | TGGATAAAATTAAAA CTTTGAGCTA GATA CACCTCAAAG ATCAAAATCTATATT VFMJ11_2035 2163832 - 2164191 + | hypothetical protein TERM 2482 2164220 - 2164248 + T 73 -8.9 -3.15574 | opp_overlap 2164222, overlap 2164218 2164222 TTCGACATATAAAAA AAGAGATGGGCAT ATC ATACCCATCTCTC TATTCATCGAGTTGA TERM 2483 2164246 - 2164222 - T 100 -13.7 -5.76633 | opp_overlap 2164222 2164220 2164218 CGACATATAAAAAAA GAGATGGGCAT ATC ATACCCATCTC TCTATTCATCGAGTT TERM 2484 2164222 - 2164246 + T 84 -11.5 -3.13639 | opp_overlap 2164222, overlap 2164220 2164218 CGACATATAAAAAAA GAGATGGGCAT ATC ATACCCATCTC TCTATTCATCGAGTT VFMJ11_2036 2164411 - 2164280 - | hypothetical protein VFMJ11_2037 2164996 - 2164421 - | cytoChrome c-type protein TorC napB 2165502 - 2165029 - | periplasmiC nitrate reductase, diheme cytochrome c subunit napA 2168067 - 2165578 - | periplasmic nitrate reductase, large subunit TERM 2485 2165792 - 2165802 + g 81 -5.4 -5.07567 | ACTTCATCTCCACGA CGTA AAT TACG TTTTTTCGCATCTGC TERM 2486 2167859 - 2167879 + g 76 -7.6 -4.18018 | gap 1 GCTTCAGGATCACCT TGAGTCGCG ACTA CGCGAC-CA TTTTGAGTACCAACA TERM 2487 2168006 - 2168037 + g 72 -8.6 -3.53012 | opp_overlap 2168012, overlap 2168012 2168014 2168024 2168028 2168028 GGTAGCGTAACCCCT GCAACAGCTGCAGC CGAA GCTGCTGCGTTTGC TTTAACAAACGCACG TERM 2488 2168014 - 2168032 + g 71 -6.6 -4.05788 | opp_overlap 2168012, overlap 2168012 2168006 2168024 2168028 2168028 AACCCCTGCAACAGC TGCAGCCG AAG CTGCTGCG TTTGCTTTAACAAAC napD 2168348 - 2168064 - | NapD protein napF 2168866 - 2168342 - | ferredoxin-type protein NapF VFMJ11_2042 2169054 - 2170745 + | nitrate/nitrite sensor protein NarQ VFMJ11_2043 2170766 - 2171377 + | nitrate/nitrite response regulator protein NarP VFMJ11_2044 2171379 - 2171708 + | ubiquinone biosynthesis protein AarF TERM 2489 2171768 - 2171797 + T 93 -9.4 -4.53705 | opp_overlap 2171773, overlap 2171773 TTCATTTTACAAACA AAAAACGCCAAC TTTTAC GTTGGCGTTTTA TTTTATCTGCACATT TERM 2490 2171773 - 2171792 + T 100 -9.3 -5.23292 | opp_overlap 2171773, overlap 2171768 TTTACAAACAAAAAA CGCCAAC TTTTAC GTTGGCG TTTTATTTTATCTGC TERM 2491 2171792 - 2171773 - T 100 -9.3 -5.72622 | opp_overlap 2171773 2171768 TTTACAAACAAAAAA CGCCAAC TTTTAC GTTGGCG TTTTATTTTATCTGC VFMJ11_2045 2172110 - 2171829 - | hypothetical protein VFMJ11_2046 2172561 - 2172277 - | paar motif protein TERM 2492 2172941 - 2172930 - g 73 -5.8 -4.5123 | AATGTATTAAATAAA CGTG GTAC CACG TATCGCCAACTAACT VFMJ11_2047 2172759 - 2173106 + | arsenate reductase TERM 2493 2173793 - 2173765 - g 70 -9.5 -2.53112 | overlap 2173760 2173764 2173768 ATCCAATTCACCAAG CGATGCCCGCTCT GTC AGAGCTAGCAACG ACCGTTTGGGACAAT dapE 2173140 - 2174273 + | succinyl-diaminopimelate desuccinylase TERM 2494 2174291 - 2174316 + F 100 -12.7 -3.95852 | ATAAATTAGGGTTAT GATGAGAGAGC TTTT GTTCTCTCATC TTTAATTGGTGCCCT TERM 2495 2174776 - 2174786 + G 89 -5.4 -5.46657 | TTAAATAAAAACGCC CCAA AAT TTGG TTTTTTCTTCCCATA VFMJ11_2049 2174332 - 2175000 + | D-alanyl-D-alanine carboxypeptidase TERM 2496 2175130 - 2175118 - g 88 -2.7 -5.95166 | GTCAATCAAAAAAAA TGAAA AAC CTTCA AGAACAAGATGATAT VFMJ11_2050 2175003 - 2175212 + | hypothetical protein TERM 2497 2175201 - 2175220 + T 93 -9.3 -4.35663 | opp_overlap 2175201 TCAGAACAAAAAAAA GACGCTC AATAAC GAGCGTC TTTCTTCATCTTATT TERM 2498 2175220 - 2175201 - T 100 -10 -6.17268 | opp_overlap 2175201 TCAGAACAAAAAAAA GACGCTCA ATAA CGAGCGTC TTTCTTCATCTTATT VFMJ11_2051 2176293 - 2175241 - | lipoprotein-34 dapA 2177186 - 2176305 - | dihydrodipicolinate synthase TERM 2499 2176548 - 2176536 - G 75 -7.7 -4.08887 | opp_overlap 2176536 2176534, overlap 2176538 AGCAGCTAAAGCAAA CATGG TCG CCATG TCTTTTGCTGCAATG TERM 2500 2176536 - 2176548 + g 70 -7.7 -3.73756 | opp_overlap 2176536 2176538, overlap 2176534 AGCAGCTAAAGCAAA CATGG TCG CCATG TCTTTTGCTGCAATG VFMJ11_2053 2177458 - 2177985 + | glycine cleavage system transcriptional repressor VFMJ11_2054 2178084 - 2178554 + | bacterioferritin comigratory protein TERM 2501 2178601 - 2178571 - T 88 -6.9 -4.91712 | opp_overlap 2178576, overlap 2178576 TTGAACTTATAAAAA TTAAAGGCGATAC CACGT GTATCGCCTTTTT TATTACCGTATTAAT TERM 2502 2178576 - 2178596 + T 100 -11.2 -5.46657 | opp_overlap 2178571 2178576 CTTATAAAAATTAAA GGCGATAC CACGT GTATCGCC TTTTTTATTACCGTA TERM 2503 2178596 - 2178576 - T 100 -11.2 -4.38116 | opp_overlap 2178576, overlap 2178571 CTTATAAAAATTAAA GGCGATAC CACGT GTATCGCC TTTTTTATTACCGTA VFMJ11_2055 2179676 - 2178612 - | transporter TERM 2504 2179079 - 2179095 + g 82 -8 -4.65895 | TCTCCAACCACACTT TCGTCG CCAGA CGACGA TTTTTAGGTAAAAGA TERM 2505 2179168 - 2179158 - G 85 -5.4 -5.29445 | TTTTAATAAGAAAAA CACT AAC AGTG GTACAAGAATAAGAT VFMJ11_2056 2179906 - 2179685 - | hypothetical protein VFMJ11_2057 2180065 - 2181519 + | zinc metalloprotease TERM 2506 2181617 - 2181607 - g 73 -2.4 -5.18726 | overlap 2181584 CTTCTAGAAGAAAAA GGGG TTA CACC AGAAATCGTAAAATA arsC 2181535 - 2181885 + | arsenate reductase TERM 2507 2181926 - 2181889 - f 73 -8.7 -3.27498 | overlap 2181891 2181892 2181895 GAGATTTTATAGGAA TACCAACCTAAGTAA CCACACAC TTACTTAGGTTGACA TAAAAACAAGGAATG TERM 2508 2181924 - 2181891 - f 77 -9.1 -3.20078 | overlap 2181889 2181892 2181895 GATTTTATAGGAATA CCAACCTAAGTAA CCACACAC TTACTTAGGTTGA CATAAAAACAAGGAA TERM 2509 2181923 - 2181892 - f 77 -10.4 -2.51725 | overlap 2181891 2181889 2181895 ATTTTATAGGAATAC CAACCTAAGTAA CCACACAC TTACTTAGGTTG ACATAAAAACAAGGA VFMJ11_2059 2181945 - 2182373 + | hypothetical protein TERM 2510 2182415 - 2182432 + T 100 -9.9 -5.31877 | opp_overlap 2182415 TAAGGAAAGAAAAAA GGTGACT ATGC AGTCACC TTTTTTATCATCAAT TERM 2511 2182432 - 2182415 - T 100 -9.9 -5.72053 | opp_overlap 2182415 TAAGGAAAGAAAAAA GGTGACT ATGC AGTCACC TTTTTTATCATCAAT VFMJ11_2060 2183624 - 2182449 - | hypothetical protein TERM 2512 2183736 - 2183748 + H 83 -4.9 -5.42198 | opp_overlap 2183736 ACCATTAGAGAGCAA CTTTT ATA AAAAG TTTTATTTTTTCACG uraA 2183861 - 2185081 + | uracil permease TERM 2513 2185168 - 2185192 + T 89 -7.2 -5.37865 | opp_overlap 2185169, overlap 2185169 TCTAGATAATAAAAA AGCTTGATGA TTAAT TCATCAAGCC TTTTTTAATTCTTCA TERM 2514 2185191 - 2185169 - T 100 -10.7 -5.60689 | opp_overlap 2185168 2185169 CTAGATAATAAAAAA GCTTGATGA TTAAT TCATCAAGC CTTTTTTAATTCTTC TERM 2515 2185169 - 2185191 + T 90 -10.7 -3.81092 | opp_overlap 2185169, overlap 2185168 CTAGATAATAAAAAA GCTTGATGA TTAAT TCATCAAGC CTTTTTTAATTCTTC upp 2185854 - 2185228 - | uracil phosphoribosyltransferase TERM 2516 2185756 - 2185736 - G 70 -8.3 -3.28924 | opp_overlap 2185735 2185736 2185740, overlap 2185740 GATGTTGCTTCATAA GTAAGTAGG CTA CCTACTTCC GTTGCTAATTCACGA purM 2186080 - 2187120 + | phosphoribosylformylglycinamidine cyclo-ligase TERM 2517 2187190 - 2187159 - f 89 -6.8 -5.72622 | gap 1, opp_overlap 2187164 TTCATAAAGAAAAAA TAAAAGGTGATC-AT TTA ATCGATCACCTTTTT TATAGCTATTATTTA TERM 2518 2187164 - 2187185 + F 85 -6.7 -5.30686 | gap 1, opp_overlap 2187159 AAAGAAAAAATAAAA GGTGATC-AT TTA ATCGATCACC TTTTTTATAGCTATT purN 2187244 - 2187885 + | phosphoribosylglycinamide formyltransferase TERM 2519 2187896 - 2187917 + T 83 -7.3 -4.79756 | opp_overlap 2187896 AATAGATGCAAAAAA GCCGCTT TAATAACT AAGCGGC TTTTTAAGTTCTATG TERM 2520 2187917 - 2187896 - T 88 -7.3 -5.15381 | opp_overlap 2187896 AATAGATGCAAAAAA GCCGCTT TAATAACT AAGCGGC TTTTTAAGTTCTATG VFMJ11_2065 2188777 - 2187944 - | putative glutamine amidotransferase TERM 2521 2188840 - 2188805 - R 89 -9.2 -4.11216 | overlap 2188807 CCTTTATGCGCAAAA TAGCCTATCTCAATAT ATAA ATATCAAGATAGGCTG CAAGATAGATTAAGC TERM 2522 2188838 - 2188807 - R 91 -11.8 -3.65542 | overlap 2188805 TTTATGCGCAAAATA GCCTATCTCAATAT ATAA ATATCAAGATAGGC TGCAAGATAGATTAA gmhA 2189431 - 2188850 - | phosphoheptose isomerase VFMJ11_2067 2189774 - 2192221 + | acyl-coenzyme a dehydrogenase TERM 2523 2192266 - 2192239 - T 100 -15 -5.46698 | opp_overlap 2192239 CTTAAAATCAAAAAA GGCCAGAGTAAC TAAT ATTACTCTGGCC TTTTTCGTAATATCT TERM 2524 2192239 - 2192266 + T 100 -14.3 -4.79826 | opp_overlap 2192239 CTTAAAATCAAAAAA GGCCAGAGTAA CTAATA TTACTCTGGCC TTTTTCGTAATATCT VFMJ11_2068 2192465 - 2192289 - | hypothetical protein TERM 2525 2192378 - 2192393 + g 86 -7.6 -5.15167 | AACCTAATTCTTGAG CAGCTA CTGT TAGCTG TTTTTGTTCATGATG TERM 2526 2192614 - 2192600 - R 88 -7.8 -5.03945 | opp_overlap 2192600 TAATAATGAGAAAAA CCGCAA AAA CTGCGG TTTTAAACTTAACTA TERM 2527 2192600 - 2192614 + r 75 -7.1 -4.19953 | opp_overlap 2192600 TAATAATGAGAAAAA CCGCA AAAAC TGCGG TTTTAAACTTAACTA VFMJ11_2069 2193900 - 2192638 - | hypothetical protein TERM 2528 2192832 - 2192842 + g 89 -6.8 -5.18726 | CTATTATTCTTTGCT GCTC TTC GAGC TTTTTCTTCTCAGCG TERM 2529 2193063 - 2193077 + g 83 -7.2 -4.68908 | TTTCTGACTGAGCTT GAGTAA TCG TTACTC TTTCTTTTGGATCAA dnaQ 2194582 - 2193911 - | DNA polymerase III, epsilon subunit TERM 2530 2194037 - 2194055 + g 79 -10.4 -3.49475 | TCTTTTAATGGTTTC TTCATCTG AAT CAGATGAA TTATCTCCAGATGAA rnhA 2194695 - 2195153 + | ribonuclease HI VFMJ11_2072 2195893 - 2195150 - | methyltransferase TERM 2531 2195196 - 2195213 + g 82 -7.7 -4.56775 | opp_overlap 2195196 2195194 2195190, overlap 2195206 2195208 TGAGCAACAGAAATA GGAGCCA ACTT TGGCTTC TTTTTCCAAGCCGAT TERM 2532 2196411 - 2196398 - g 73 -2.3 -5.31877 | overlap 2196399 ACTCATTACAAAAAA TGGCA GCAT TGCCT GATGAAACTGAAGTC gloB 2195941 - 2196699 + | hydroxyacylglutathione hydrolase VFMJ11_2074 2196791 - 2198344 + | membrane-bound lytic murein transglycosylase D TERM 2533 2198865 - 2198842 - g 71 -6.8 -3.967 | overlap 2198845 AATGGACTAATGAAA TTACCAATGA CAGA TCATTGGTCA GCTTACGCTAGCTCT VFMJ11_2075 2198341 - 2199033 + | hypothetical protein VFMJ11_2076 2199886 - 2199014 - | protein VV1_1880 TERM 2534 2199060 - 2199088 + g 81 -7.5 -4.60797 | gap 1 AATGGATTATGATCA GAAGCGTGACTC TTTATC GAG-CGCGCTTC TTTTATATCTAACCC TERM 2535 2199908 - 2199891 - R 100 -9.9 -5.72622 | opp_overlap 2199887 2199891 TTCATAAACAAAAAA GGAGTGA CTCA TCACTCC TTCCTTCTATTAACA TERM 2536 2199891 - 2199908 + r 82 -9.9 -3.54382 | opp_overlap 2199891, overlap 2199887 TTCATAAACAAAAAA GGAGTGA CTCA TCACTCC TTCCTTCTATTAACA VFMJ11_2077 2200336 - 2199998 - | nitrogen regulatory protein P-II TERM 2537 2200430 - 2200411 - R 93 -7.1 -5.64873 | opp_overlap 2200411 TTCAATAATAAAAAA GCACCGC ATACCA GCAGTGC TTTAATTTATGATTT VFMJ11_2078 2200790 - 2200479 - | cytochrome c-554 TERM 2538 2200770 - 2200780 + g 81 -2.6 -5.64006 | TAATGCGATAACCGC TAAT CCA ATTA TTTTTTTCATTCCAT VFMJ11_2079 2202212 - 2200842 - | tRNA(Ile)-lysidine synthase TERM 2539 2202222 - 2202205 - G 95 -8.4 -5.4505 | opp_overlap 2202205 TCTTCCAATAAAAAA GCGAGC ACTCAG GCTCGC TTTCACTTTACTCTA TERM 2540 2202205 - 2202222 + g 77 -8.4 -3.8822 | opp_overlap 2202205 TCTTCCAATAAAAAA GCGAGC ACTCAG GCTCGC TTTCACTTTACTCTA accA 2203242 - 2202283 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit VFMJ11_2081 2206773 - 2203294 - | DNA polymerase III subunit alpha TERM 2541 2205760 - 2205770 + g 71 -6.8 -4.0075 | opp_overlap 2205759 GATCAAGAAGTAACC TGGG AAT CCCA TTTGGTTGATTACAT rnhB 2207396 - 2206773 - | ribonuclease HII lpxB 2208552 - 2207401 - | lipid-A-disaccharide synthase TERM 2542 2208589 - 2208572 - R 93 -7.7 -5.64421 | opp_overlap 2208572 ACTCCAAATAAAAAA GGCCTAC ATGA ATAGGCC TTATATACTTTAACT lpxA 2209409 - 2208621 - | acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase TERM 2543 2208725 - 2208749 + g 71 -7.1 -3.85698 | opp_overlap 2208746 CTTTTGCTTCTTCTA GCGTATTACCG TTA CGGTAAAGTGC TTTATAAGCACGACG TERM 2544 2208760 - 2208746 - G 72 -8.6 -3.60296 | opp_overlap 2208725 TACCGTTACGGTAAA GTGCTT TAT AAGCAC GACGAATTGCATGGA fabZ 2209864 - 2209412 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 2545 2209957 - 2209939 - R 100 -13.2 -5.09685 | opp_overlap 2209937 2209935 TAATAGATAGAAAAA GGTCTGCA AAA TGCAGACC AATACTTATTTATTA lpxD 2211011 - 2209992 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase VFMJ11_2087 2211529 - 2211020 - | chaperone protein skp yaeT 2214039 - 2211610 - | outer membrane protein assembly complex, YaeT protein TERM 2546 2212058 - 2212046 - G 70 -5.5 -4.41494 | GAGTTTGAACCAAAA CCACG TAG CGTAG TGAAGCCACCCGCAT TERM 2547 2213995 - 2213971 - G 71 -4.9 -4.48713 | GTCATCAATAACAAA TGTTTCTGCAC TGT GCGCTGCAACA CTGCCAAACAGCAGT rseP 2215427 - 2214069 - | RIP metalloprotease RseP dxr 2216632 - 2215430 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2548 2216689 - 2216668 - R 100 -9.5 -5.14985 | TTAAAGATAGAAAAA CGGCAGATA ATCC TATCTACCG CATAACTTAAAAATG TERM 2549 2216710 - 2216729 + r 72 -9.4 -2.63596 | opp_overlap 2216707 CTTAAAAATGGATAT GGTATTTG TCGT CAAATACC TAATATCAGCTAGAA cdsA 2217578 - 2216739 - | phosphatidate cytidylyltransferase uppS 2218355 - 2217582 - | undecaprenyl pyrophosphate synthetase 1 TERM 2550 2217809 - 2217821 + g 70 -7.7 -3.65902 | opp_overlap 2217809 2217808 CCACTTCAGGCAAAT CTGAC ATC GTCAG TTTAGATGCGATAAG TERM 2551 2218399 - 2218377 - R 85 -6.3 -5.26119 | gap 1, opp_overlap 2218377 CCCTTAAAAATAAAA GCGCT-GATG TCTC CACCCAGCGC TTCTTATGGTGTTCG frr 2219034 - 2218477 - | ribosome recycling factor pyrH 2219801 - 2219070 - | UMP kinase TERM 2552 2219928 - 2219908 - R 100 -11.1 -4.88067 | opp_overlap 2219908 2219906 AGCTATTCACAAAAA GACCGCAGC ATA GCCACGGTC TCTTTCAGTTACAAT tsf 2220799 - 2219954 - | translation elongation factor Ts TERM 2553 2220524 - 2220499 - G 70 -8.3 -3.44146 | gap 1, opp_overlap 2220501 2220510, overlap 2220501 2220514 TCGCTTGAGAAGCAA CAGCTGCAGCAG CAA CTTCTGCAGC-G AATGCTGTGAAGTTA TERM 2554 2220523 - 2220501 - G 86 -12 -3.29325 | opp_overlap 2220501 2220510, overlap 2220499 2220514 GCTTGAGAAGCAACA GCTGCAGCAG CAA CTTCTGCAGC GAATGCTGTGAAGTT TERM 2555 2220858 - 2220835 - R 100 -9.5 -4.65895 | opp_overlap 2220832, overlap 2220836 TGGTGGAGTTAAAAA TCAGGGGCC AAATTG GGCCCCTGC TAACTATTTCAGTTT TERM 2556 2220857 - 2220836 - R 93 -13 -3.39216 | opp_overlap 2220832, overlap 2220835 GGTGGAGTTAAAAAT CAGGGGCC AAATTG GGCCCCTG CTAACTATTTCAGTT rpsB 2221661 - 2220933 - | ribosomal protein S2 TERM 2557 2221217 - 2221232 + g 83 -7.6 -4.70659 | TGTTTTTGATACCGC CTAGAG ATTT CTCTAG TTTTTCCATATCACG map 2222021 - 2222848 + | methionine aminopeptidase, type I TERM 2558 2222895 - 2222854 - f 71 -3.1 -5.08731 | opp_overlap 2222865 2222888, overlap 2222865 TAACAAATAACAAAA TCGTAAATAAACAGAAGGC TTCG GTCTTCTGTTTTTTTATCA GCAAGGATTGCTATG TERM 2559 2222865 - 2222884 + F 95 -8.6 -5.60993 | opp_overlap 2222854 2222865 AAAATCGTAAATAAA CAGAAGGC TTCG GTCTTCTG TTTTTTTATCAGCAA TERM 2560 2222884 - 2222865 - f 76 -6.4 -4.48743 | opp_overlap 2222865, overlap 2222854 AAAATCGTAAATAAA CAGAAGGC TTCG GTCTTCTG TTTTTTTATCAGCAA TERM 2561 2223476 - 2223466 - g 86 -2.4 -5.88471 | overlap 2223467 GATGAGCAAAAAAAA CGTC ACA GCCG TTACCATGACACCAC glnD 2222908 - 2225529 + | protein-P-II uridylyltransferase TERM 2562 2225576 - 2225552 - f 100 -13.7 -3.97102 | opp_overlap 2225550 2225549, overlap 2225545 ACCTAAAAGCAATAA GTGGGATAGAC AAG ATCTATCCCAC AACTTTCATTCACAG VFMJ11_2099 2225669 - 2226049 + | protein VV1_1856 TERM 2563 2226089 - 2226073 - T 100 -10.9 -5.76633 | opp_overlap 2226073 GTAGACATAAAAAAA TGGACCA TAA TGGTCCA TTTTTTATTATATAG TERM 2564 2226073 - 2226089 + T 100 -10.9 -5.60689 | opp_overlap 2226073 GTAGACATAAAAAAA TGGACCA TAA TGGTCCA TTTTTTATTATATAG secF_2 2227069 - 2226119 - | protein-export membrane protein SecF secD_2 2228905 - 2227082 - | protein-export membrane protein SecD TERM 2565 2228985 - 2228960 - R 100 -9.1 -4.8622 | opp_overlap 2228959 GTCCTTAACGAAAAA TACCCCCTAAC CGAA ATTAGAGGGTA CAGTTTTTATAGTGA yajC 2229327 - 2228992 - | preprotein translocase, YajC subunit tgt 2230549 - 2229422 - | queuine tRNA-ribosyltransferase queA 2231814 - 2230762 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase VFMJ11_2105 2232047 - 2232490 + | acetoin utilization AcuB protein TERM 2566 2232522 - 2232505 - T 88 -7 -4.89966 | ACAGCCAAAAAGAAA GGGAGA CTCCAT TCTCCC TTCAAATCCAGTTAG aceA 2233899 - 2232571 - | isocitrate lyase TERM 2567 2232896 - 2232907 + g 74 -4.4 -4.8543 | AATTTCGCAATCGTT TCTG AATC CAGA TTTTTCTCCCAGTTA aceB 2235518 - 2233914 - | malate synthase A TERM 2568 2234102 - 2234113 + g 72 -4.4 -4.76312 | overlap 2234074 CAGTAACAACTGCAC CACT ATCT AGTG TTTTTCCATGTTGTA TERM 2569 2234160 - 2234172 + g 70 -9.1 -3.16676 | overlap 2234158 CGTTCGTGATATTTC TGCGG TAG CCGCA TCTTCCATTAATCCG TERM 2570 2235763 - 2235735 - R 74 -9.1 -2.99319 | AATGCTCTATAGATA TGATTGTCAAAAT TTA ATTTTTACAATCA AGCAACATTAAAACG TERM 2571 2236046 - 2236075 + r 87 -10.9 -3.48772 | opp_overlap 2236046 ATTCAAAAGTAGAAA GGCGACTATTTAT AAAA ATAAATAATCGCC TTGTATAAAGAAATT TERM 2572 2236075 - 2236046 - R 100 -13.1 -4.21402 | opp_overlap 2236046 ATTCAAAAGTAGAAA GGCGACTATTTAT AAAA ATAAATAATCGCC TTGTATAAAGAAATT VFMJ11_2108 2236992 - 2236093 - | hydrogen peroxide-inducible genes activator TERM 2573 2237111 - 2237093 - H 71 -3.1 -5.0917 | opp_overlap 2237093, overlap 2237094 TTATGAAAAAACAAA GCCAAAC AAGAA GTTTGGA TATCTAACTTTTTAG VFMJ11_2109 2237138 - 2237746 + | peroxiredoxin-2 TERM 2574 2237870 - 2237891 + F 100 -13.1 -5.59962 | opp_overlap 2237870 TGCCTAATACGAAAA GCCCTAAAG TTAT CTTTAGGGC TTTTTCTTTGTTTTC TERM 2575 2237891 - 2237870 - f 100 -13.1 -4.4261 | opp_overlap 2237870 TGCCTAATACGAAAA GCCCTAAAG TTAT CTTTAGGGC TTTTTCTTTGTTTTC VFMJ11_2110 2238028 - 2238771 + | copper homeostasis protein CutC TERM 2576 2238782 - 2238803 + T 78 -7.3 -4.42653 | opp_overlap 2238782 AATAAAAACAAAAAA GCCAGAG CATCAAAA CTCTGGC TTTTATAACTAAAAT TERM 2577 2238803 - 2238782 - T 100 -8 -6.01725 | opp_overlap 2238782 AATAAAAACAAAAAA GCCAGAGC ATCAAA ACTCTGGC TTTTATAACTAAAAT VFMJ11_2111 2239190 - 2238828 - | protein YgiW VFMJ11_2112 2239885 - 2239247 - | accessory colonization factor AcfA TERM 2578 2239636 - 2239657 + g 89 -6.7 -5.26316 | AGCTTAAAACTTTAT TTTGAGAGT CATC ACTTTCAAA TTTTTTGTAACCTAA VFMJ11_2113 2240194 - 2241123 + | transcriptional regulator, LysR family TERM 2579 2241366 - 2241389 + F 91 -5.3 -5.95539 | CCATTAGGTAACTTC GCCTCTG TTCTCTCATC CAGAGGC TTTTTTTCTTTACCC TERM 2580 2242127 - 2242116 - g 70 -5.8 -4.32649 | ATCCTAAAAATTAAA GGCT TAGA AGCC AACGTCGGTTTTCGT VFMJ11_2114 2241453 - 2242376 + | transcriptional regulator TERM 2581 2242421 - 2242448 + F 89 -7 -5.35222 | opp_overlap 2242421 TAACTCAACATTAAA GCCTCTATTCTT TTAA GGGATTAGAGGC TTTTTTGTGCATTTT TERM 2582 2242536 - 2242523 - f 70 -8.1 -3.23708 | overlap 2242521 CGCTTTCAAAAATTA TGGCG ATTT CGCCA ACCATAGATTAAGAG VFMJ11_2115 2242562 - 2243875 + | lipoprotein, putative TERM 2583 2243928 - 2243906 - f 83 -8.4 -4.29621 | opp_overlap 2243906, overlap 2243901 GATAAATAAAGCAAA GGAGTCGCTA TTT CAGTGACTCC TTTTTTATTTTTACT TERM 2584 2243906 - 2243928 + F 100 -9.9 -5.95286 | opp_overlap 2243901 2243906 GATAAATAAAGCAAA GGAGTCGCT ATTTC AGTGACTCC TTTTTTATTTTTACT VFMJ11_2116 2243959 - 2244600 + | hypothetical protein TERM 2585 2244717 - 2244746 + F 82 -5.7 -5.2197 | gap 1, overlap 2244718 TTGGTAACTCTCCCC CCCCCTGCA-TAGG TAA CTTGGTGCAGGGGC TTTTTACTTTTTATG TERM 2586 2244718 - 2244745 + F 80 -9.2 -3.70742 | gap 1, overlap 2244717 TGGTAACTCTCCCCC CCCCTGCA-TAGG TAA CTTGGTGCAGGGG CTTTTTACTTTTTAT TERM 2587 2245269 - 2245257 - g 77 -4.8 -4.98461 | opp_overlap 2245265 AAACAACAAAAGAAA GAGC GTTAG GCTC AAGTATTGGGGCATC VFMJ11_2117 2244923 - 2245417 + | hypothetical protein TERM 2588 2245458 - 2245481 + T 100 -15.4 -5.38326 | opp_overlap 2245458 GTTCAGATACAAAAA TGGCGCTGTT TAAA AACAGCGCCA TTTTTATTTAATTAG TERM 2589 2245481 - 2245458 - T 100 -15.4 -5.03994 | opp_overlap 2245458 GTTCAGATACAAAAA TGGCGCTGTT TAAA AACAGCGCCA TTTTTATTTAATTAG VFMJ11_2118 2246070 - 2245510 - | hypothetical protein TERM 2590 2245756 - 2245739 - G 80 -6.3 -4.68103 | opp_overlap 2245728 GTAAGGTTAACAAAA CCTAGGT TAGC ACCTAAG TCATCACCTTTGTGC phoU 2246957 - 2246259 - | phosphate transport system regulatory protein PhoU pstB_2 2247815 - 2246997 - | phosphate ABC transporter, ATP-binding protein VFMJ11_2121 2249277 - 2247820 - | phosphate transport system permease protein PstA VFMJ11_2122 2251573 - 2249366 - | phosphate transport system permease protein PstC VFMJ11_2123 2252621 - 2251683 - | phosphate-binding protein phoR 2253982 - 2252687 - | phosphate regulon sensor kinase PhoR TERM 2591 2252951 - 2252933 - G 70 -9 -3.10715 | opp_overlap 2252932 2252929 CTCAGCACCACTGAA TGTTGATT GCC AATCAACA ATAATTTCAGCACCA phoB 2254700 - 2254008 - | phosphate regulon transcriptional regulatory protein PhoB TERM 2592 2254338 - 2254349 + g 73 -7.2 -4.11394 | opp_overlap 2254336 2254334, overlap 2254336 AGTTGGAGAAACACG GCGG ATCA CCGC TTTTAAGCGTGCCAT TERM 2593 2254615 - 2254625 + g 75 -5.4 -4.82667 | TCTTCTGCTTCGATA GGTT CAT AACC TTTTTGCTCTAGTAC VFMJ11_2126 2254913 - 2255827 + | recombination-associated protein RdgC VFMJ11_2127 2256071 - 2257459 + | peptidase U32 VFMJ11_2128 2257538 - 2257717 + | ferredoxin TERM 2594 2257748 - 2257775 + T 100 -12.8 -4.9725 | opp_overlap 2257748 TGAACCAAATAAAAA TGCCCAGCGATA TCAC TATCTCTGGGCA TTTTTGTATCAGGCT TERM 2595 2257775 - 2257748 - T 100 -12.8 -5.38326 | opp_overlap 2257748 TGAACCAAATAAAAA TGCCCAGCGATA TCAC TATCTCTGGGCA TTTTTGTATCAGGCT VFMJ11_2129 2258892 - 2257798 - | hypothetical protein TERM 2596 2259090 - 2259061 - R 100 -13.7 -5.66684 | opp_overlap 2259061 CAAGGCATAAAAAAA GAGCAATGAGGCT GACT AGCATCATTGCTC TTTTTTAGTATTTAA TERM 2597 2259061 - 2259090 + r 100 -13.7 -5.32699 | opp_overlap 2259061 CAAGGCATAAAAAAA GAGCAATGAGGCT GACT AGCATCATTGCTC TTTTTTAGTATTTAA dnaJ 2260303 - 2259119 - | chaperone protein DnaJ TERM 2598 2260537 - 2260574 + r 75 -8.3 -3.7398 | opp_overlap 2260538 2260539, overlap 2260535 2260539 AGGTTGATATTACAA ACTTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAATA TATTTTCCATTCGAA TERM 2599 2260573 - 2260538 - R 100 -14 -4.0162 | opp_overlap 2260537 2260535 2260539, overlap 2260539 GGTTGATATTACAAA CTTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAAT ATATTTTCCATTCGA TERM 2600 2260539 - 2260572 + r 100 -15.3 -3.44792 | opp_overlap 2260538 2260539, overlap 2260537 2260535 GTTGATATTACAAAC TTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAA TATATTTTCCATTCG TERM 2601 2260572 - 2260539 - R 100 -17.5 -3.00651 | opp_overlap 2260539 2260537 2260535, overlap 2260538 GTTGATATTACAAAC TTGCGGGCGGTAGAG AAAA CTCCAACGCCCGCAA TATATTTTCCATTCG TERM 2602 2260734 - 2260751 + r 71 -5.6 -4.56133 | overlap 2260727 ATTAACCCTTCTAGC GACAAG AAATTA CTTGTC TTTTACTTCTTCAAA dnaK 2262647 - 2260743 - | chaperone protein DnaK TERM 2603 2262834 - 2262815 - R 100 -8.6 -6.09888 | TCTGAACAAAAAAAA GCCTAACA ATCA TGTCAGGC TCAATCATTCTAGGT VFMJ11_2132 2263816 - 2262869 - | hypothetical protein TERM 2604 2263111 - 2263101 - G 71 -6.8 -4.04206 | TTAGCGTTAGATAAA TCGC CAT GCGA AACGGAAGTATTTAC TERM 2605 2263183 - 2263216 + g 71 -7.5 -3.90112 | overlap 2263173 CTGTAGCAACATCTT GTTTGCCTTGTAGCT TATC AGGTACAAGCCAAGC TTTCATTCGAACAAA TERM 2606 2263995 - 2264024 + r 77 -4.9 -5.17353 | opp_overlap 2263999, overlap 2263999 2264022 AAAAAAAAGACAAAA AAAAGCGATTCCG AACT CGGAACCGCTTGA TTTTTTAATCACTAT TERM 2607 2264020 - 2263999 - R 100 -12.3 -6.18768 | opp_overlap 2263995 2263999 AAAAGACAAAAAAAA GCGATTCCG AACT CGGAACCGC TTGATTTTTTAATCA TERM 2608 2263999 - 2264020 + r 87 -10.1 -3.96447 | opp_overlap 2263999, overlap 2263995 AAAAGACAAAAAAAA GCGATTCCG AACT CGGAACCGC TTGATTTTTTAATCA grpE 2264643 - 2264059 - | co-chaperone GrpE VFMJ11_2134 2264812 - 2265705 + | putative inorganic polyphosphate/ATP-NAD kinase TERM 2609 2265747 - 2265788 + F 100 -11.1 -4.98616 | opp_overlap 2265744 2265758 2265762 2265764, overlap 2265749 AATTTAAATTCACTT TACTGTATAAAGAAACAGT ATAT ACTGTGTCTATATACAGTG TTTTTCGTATTTTAA TERM 2610 2265749 - 2265786 + F 100 -11.5 -4.09348 | opp_overlap 2265744 2265758 2265762 2265764, overlap 2265747 TTTAAATTCACTTTA CTGTATAAAGAAACAGT ATAT ACTGTGTCTATATACAG TGTTTTTCGTATTTT TERM 2611 2266902 - 2266888 - g 74 -6.4 -4.38092 | GAAGAACTAAAACAA CACTTC TTA GAAGCG GCACATAAGTTAACG recN 2265823 - 2267490 + | DNA repair protein RecN TERM 2612 2267522 - 2267547 + F 100 -9.2 -5.14965 | opp_overlap 2267522 TTATCGACTCAAAAA GCCAATATTA TTTTAT TAATATTGGC TTTTTTAATGAAAGT TERM 2613 2267547 - 2267522 - f 100 -9.2 -4.67353 | opp_overlap 2267522 TTATCGACTCAAAAA GCCAATATTA TTTTAT TAATATTGGC TTTTTTAATGAAAGT VFMJ11_2136 2267706 - 2268062 + | small protein A TERM 2614 2268117 - 2268093 - T 100 -15.1 -5.88197 | opp_overlap 2268093 TCAAACACAAAAAAA CCGGATCTCGT TTA ACGAAATCCGG TTTTTTATTTCTATA TERM 2615 2268093 - 2268117 + T 100 -12.9 -5.76237 | opp_overlap 2268093 TCAAACACAAAAAAA CCGGATCTCGT TTA ACGAAATCCGG TTTTTTATTTCTATA VFMJ11_2137 2268500 - 2268189 - | protein VV1_0369 VFMJ11_2138 2268924 - 2268487 - | cyclase/dehydrase TERM 2616 2269449 - 2269431 - g 89 -6.7 -5.22039 | GCTAAAGGTAAAAAA CTGCACG ATAAA CGTACAG ATTCAAAAGAAAAAG smpB 2269026 - 2269511 + | SsrA-binding protein TERM 2617 2269685 - 2269670 - T 77 -3.2 -5.4477 | overlap 2269672 AAAGCCGCAAAAAAA TAGTCG CAAA CGACGA AAACTACGCACTAGC TERM 2618 2269683 - 2269672 - T 72 -5.8 -4.35085 | overlap 2269670 AGCCGCAAAAAAATA GTCG CAAA CGAC GAAAACTACGCACTA TERM 2619 2269988 - 2269965 - T 100 -11 -4.10453 | opp_overlap 2269965, overlap 2269955 CAAACGTTTGGAAAA GCCCAACTTC GAAA GAGGTTGGGC TTTTTTGTTTCTTCA TERM 2620 2269965 - 2269988 + T 100 -13.2 -5.80003 | opp_overlap 2269955 2269965 CAAACGTTTGGAAAA GCCCAACTTC GAAA GAGGTTGGGC TTTTTTGTTTCTTCA VFMJ11_2140 2270927 - 2270067 - | hypothetical protein VFMJ11_2141 2273377 - 2270927 - | type I restriction-modification system, R subunit VFMJ11_2142 2274513 - 2273383 - | restriction modification system DNA specificity domain protein VFMJ11_2143 2275970 - 2274513 - | type I restriction-modification system, M subunit TERM 2621 2274976 - 2274997 + g 77 -5.1 -4.86001 | gap 1, opp_overlap 2274968, overlap 2274971 2274977 TTAATTACGATGGCG GCTTG-GCCC CCA GGGCGCAAGG TTTTTATAAAGTGCT TERM 2622 2274977 - 2274996 + g 72 -8.6 -3.50877 | gap 1, opp_overlap 2274968, overlap 2274971 2274976 TAATTACGATGGCGG CTTG-GCCC CCA GGGCGCAAG GTTTTTATAAAGTGC TERM 2623 2275497 - 2275512 + g 70 -3.2 -4.89477 | TTTGGTTTCGTACAG GTGCGA CAGC TCGTGC TTTTCTTCTTGCGAA VFMJ11_2144 2277354 - 2276095 - | HipA domain protein VFMJ11_2145 2277680 - 2277354 - | putative transcriptional regulator, XRE family TERM 2624 2277797 - 2277784 - H 71 -5.3 -4.54449 | opp_overlap 2277784 ATATTCCACACAAAA CAACT AGAG AGTTG TAATTAGGCGGTAAA VFMJ11_2146 2278222 - 2279355 + | maltose/maltodextrin-binding protein VFMJ11_2147 2279468 - 2280766 + | maltose transport system permease protein MalF VFMJ11_2148 2280766 - 2281680 + | maltose transport system permease protein MalG VFMJ11_2149 2281680 - 2282816 + | multiple sugar-binding transport ATP-binding protein MsmK VFMJ11_2150 2282909 - 2283532 + | hypothetical protein TERM 2625 2283576 - 2283550 - f 87 -12.4 -3.06831 | overlap 2283539 CCAATCGCTATTTAA CTTATTGGCCTA TCG TAGGCCAAAAAG GCACAAGCTAGCCGA VFMJ11_2151 2283622 - 2285589 + | amylo-1,6-glucosidase VFMJ11_2152 2285697 - 2287454 + | neopullulanase TERM 2626 2287598 - 2287563 - g 71 -6.3 -4.16251 | gap 1, overlap 2287571 ATACAAGTTGCAAAA GCACAAAATGTTACGC AAGCG GCG-AACACCTTATGC TTAAGCCAACCGACG VFMJ11_2153 2287524 - 2288459 + | transcriptional regulator, LysR family TERM 2627 2288449 - 2288435 - T 80 -6.4 -4.72201 | GCTCATAAAAAACAA CCCTCA AAT TAAGGG CAAAGAATAGAAACA TERM 2628 2288470 - 2288493 + T 100 -9.6 -4.30978 | opp_overlap 2288470 AATAGAAACAATAAA GCCCAGAG CAGTAAAT CTCTGGGC TTTTACTAGATTAAC TERM 2629 2288493 - 2288470 - T 100 -9.6 -4.66814 | opp_overlap 2288470 AATAGAAACAATAAA GCCCAGAG CAGTAAAT CTCTGGGC TTTTACTAGATTAAC VFMJ11_2154 2289130 - 2288504 - | magnesium transporter VFMJ11_2155 2289500 - 2290549 + | hypothetical protein TERM 2630 2290577 - 2290599 + G 95 -12.1 -4.19953 | opp_overlap 2290579 CGTTTGTAATTGGAA CACTGCTGA CTTGT TCAGCAGTG TTTTACCATTGGATA VFMJ11_2156 2290549 - 2291622 + | hypothetical protein TERM 2631 2291622 - 2291649 + T 77 -10 -2.97667 | opp_overlap 2291627, overlap 2291627 GATAGCCCACCAATA AAAAAGGAGATC GCAC GATCTCCTTTTA TCATTTAATGAATCC TERM 2632 2291627 - 2291644 + T 100 -9.9 -4.63172 | opp_overlap 2291627, overlap 2291622 CCCACCAATAAAAAA GGAGATC GCAC GATCTCC TTTTATCATTTAATG TERM 2633 2291644 - 2291627 - T 100 -9.9 -5.5112 | opp_overlap 2291627 2291622 CCCACCAATAAAAAA GGAGATC GCAC GATCTCC TTTTATCATTTAATG VFMJ11_2157 2293054 - 2291669 - | CytC TERM 2634 2293359 - 2293379 + H 74 -6.3 -4.29845 | overlap 2293350 AATTATGATAAGTTT TATCTATTA AAT TAATAGGTA TTTTCAGTTAAGTTA VFMJ11_2158 2293462 - 2294976 + | catalase VFMJ11_2159 2295073 - 2295528 + | AnkB protein TERM 2635 2295846 - 2295825 - g 70 -8.1 -3.6581 | gap 1, overlap 2295823 2295827 2295833 ATGATCCTGAAAATA CA-GGGAAAC ATG GTTTCCCATG GACCACTAATAATCA TERM 2636 2295843 - 2295827 - g 80 -10.9 -3.40622 | overlap 2295825 2295823 2295833 GATCCTGAAAATACA GGGAAAC ATG GTTTCCC ATGGACCACTAATAA sodC_1 2295542 - 2296054 + | copper/zinc superoxide dismutase TERM 2637 2296066 - 2296109 + T 83 -6.2 -5.06089 | gap 1, opp_overlap 2296072, overlap 2296067 2296072 ATAGCTAAAAATACA CA-AAAAGCCCATGATATGCA TAT TACACATCATGGGCTTTTCTA TTTTATTTGTGATTT TERM 2638 2296067 - 2296107 + T 100 -11.3 -4.12652 | opp_overlap 2296072, overlap 2296066 2296072 TAGCTAAAAATACAC AAAAAGCCCATGATATGCA TAT TACACATCATGGGCTTTTC TATTTTATTTGTGAT TERM 2639 2296102 - 2296072 - T 100 -15.6 -5.20633 | opp_overlap 2296067 2296066 2296072 AAAAATACACAAAAA GCCCATGATATGCA TAT TACACATCATGGGC TTTTCTATTTTATTT TERM 2640 2296072 - 2296102 + T 100 -11.2 -5.00136 | opp_overlap 2296072, overlap 2296067 2296066 AAAAATACACAAAAA GCCCATGATATGCA TAT TACACATCATGGGC TTTTCTATTTTATTT VFMJ11_2161 2297008 - 2296139 - | pyridoxal kinase VFMJ11_2162 2299223 - 2297085 - | lysine decarboxylase, constitutive TERM 2641 2297414 - 2297459 + g 77 -8.4 -3.84674 | opp_overlap 2297423, overlap 2297454 CTTTGAACATCAGCT CTGGTAAACGGTATTTACGA GTTAAA TCGTGAATGCCTTGTGCCAG TTCTTGTACTCGCAT VFMJ11_2163 2300678 - 2299344 - | cadaverine/lysine antiporter TERM 2642 2301072 - 2301062 - H 74 -5.4 -4.82162 | opp_overlap 2301062 TATAAGAATATAAAA CCAA TTT TTGG TGCTTAACTTCTTAT TERM 2643 2302786 - 2302774 - g 85 -9.1 -4.21194 | CTTGATGATTTAAAA GGTGC GTG GCACC CAAAGAAAAAACAAC VFMJ11_2164 2301337 - 2302806 + | amino-acid carrier protein AlsT TERM 2644 2302832 - 2302856 + T 100 -15.8 -5.4505 | opp_overlap 2302832 AATTAGTTAAAAAAA GCCCGTCGAA CTAAA TTCGACGGGC TTTTTTATTACACCA TERM 2645 2302856 - 2302832 - T 100 -16.5 -5.49729 | opp_overlap 2302832 AATTAGTTAAAAAAA GCCCGTCGAAC TAA ATTCGACGGGC TTTTTTATTACACCA VFMJ11_2165 2304524 - 2302899 - | transcriptional activator CadC TERM 2646 2303402 - 2303412 + g 85 -4 -5.54894 | overlap 2303407 CTAACAGATCGATCC CTTT TTC AAAG TTTTTTTGATCCGTT TERM 2647 2303970 - 2303950 - G 85 -2.5 -5.71983 | overlap 2303952 2303963 CCAACGAGAAAAAAA TCGAACGCT AAT AGCTTCCAA CGATGTAAAAAGCTA TERM 2648 2305025 - 2305006 - R 100 -10 -5.76237 | GATAGAAATAAAAAA GGCCAACC ACTT GGTTAGCC TCTAAGAAAACGGAT VFMJ11_2166 2305475 - 2305047 - | YeeE/YedE family protein VFMJ11_2167 2305897 - 2305484 - | YeeE/YedE TERM 2649 2306601 - 2306583 - g 84 -10.4 -3.86346 | TTATTGGGTTAGAAA TGATGGAA GCT TTCCATCA ACTCGGTATCAAGAC VFMJ11_2168 2306087 - 2307733 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2650 2308554 - 2308537 - g 70 -5.5 -4.40184 | GCAACTAAAGATAAA CGAAACG TCTT CGTTACG GGTCATCCAGAATAT metA 2307856 - 2308797 + | homoserine O-succinyltransferase VFMJ11_2170 2309062 - 2310390 + | C4-dicarboxylate membrane transporter TERM 2651 2310447 - 2310406 - T 83 -10.4 -3.1552 | opp_overlap 2310409 2310414, overlap 2310414 TGCCACTCATCAATA CAAAAAAAGCCCATGCAA ATACCA TTGCATAGGCTTTTCTTT TCAATAACTGATGTT TERM 2652 2310409 - 2310444 + T 78 -7.7 -4.20084 | opp_overlap 2310406 2310414, overlap 2310414 CACTCATCAATACAA AAAAAGCCCATGCAA ATACCA TTGCATAGGCTTTTC TTTTCAATAACTGAT TERM 2653 2310439 - 2310414 - T 100 -9.8 -5.82172 | opp_overlap 2310409 2310414, overlap 2310406 ATCAATACAAAAAAA GCCCATGCAA ATACCA TTGCATAGGC TTTTCTTTTCAATAA TERM 2654 2310414 - 2310439 + T 88 -7.6 -5.10933 | opp_overlap 2310414 2310406, overlap 2310409 ATCAATACAAAAAAA GCCCATGCAA ATACCA TTGCATAGGC TTTTCTTTTCAATAA VFMJ11_2171 2311677 - 2310463 - | nucleoside permease NupC VFMJ11_2172 2312065 - 2312628 + | hypothetical protein TERM 2655 2312710 - 2312733 + T 79 -9.6 -3.1552 | opp_overlap 2312712, overlap 2312708 2312712 ATTTGTAGCAATAAA AAGCCCTAAG TTAC CTTAGGGCTC TCTTACTAACTAAAA TERM 2656 2312712 - 2312731 + T 85 -12.2 -3.13867 | opp_overlap 2312712, overlap 2312710 2312708 TTGTAGCAATAAAAA GCCCTAAG TTAC CTTAGGGC TCTCTTACTAACTAA TERM 2657 2312731 - 2312712 - T 100 -12.2 -5.1356 | opp_overlap 2312712 2312710 2312708 TTGTAGCAATAAAAA GCCCTAAG TTAC CTTAGGGC TCTCTTACTAACTAA rpoS 2313733 - 2312768 - | RNA polymerase sigma factor RpoS VFMJ11_2174 2314777 - 2313788 - | lipoprotein NlpD TERM 2658 2314404 - 2314381 - G 79 -11 -3.25823 | overlap 2314384 TTGTTGCGACAGGAA CAACGGCAAC CGCT GTCGCCGTCG AGCTTGAAGACGAAT TERM 2659 2314401 - 2314384 - G 76 -9.1 -3.7732 | overlap 2314381 TTGCGACAGGAACAA CGGCAAC CGCT GTCGCCG TCGAGCTTGAAGACG TERM 2660 2314523 - 2314546 + g 74 -6 -4.34811 | opp_overlap 2314516, overlap 2314516 2314525 CATATAAGGCGCTTT AAGCTCGTTG TATG CAATGAGCTC TTTTACGTCTTTATT TERM 2661 2314525 - 2314544 + g 73 -8.6 -3.75707 | opp_overlap 2314516, overlap 2314516 2314523 TATAAGGCGCTTTAA GCTCGTTG TATG CAATGAGC TCTTTTACGTCTTTA pcm 2315417 - 2314791 - | protein-L-isoaspartate O-methyltransferase surE 2316178 - 2315417 - | 5'/3'-nucleotidase SurE TERM 2662 2316015 - 2315993 - G 79 -11.4 -2.62192 | opp_overlap 2315955, overlap 2315988 2315992 TTGCACTGAATGAAT GTGTTCATCA ATT TGACGAACAC GTAATGGGGATTCAA truD 2317253 - 2316198 - | tRNA pseudouridine synthase D ispF 2317741 - 2317265 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 2318457 - 2317741 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VFMJ11_2180 2318745 - 2318461 - | cell division protein FtsB TERM 2663 2318548 - 2318559 + g 81 -5.8 -5.06451 | AGCTCTTTCTTCAAT GGCT TCAG AGCC TTTTTTCAAGTCATC TERM 2664 2318838 - 2318855 + r 80 -6.9 -4.53705 | opp_overlap 2318838 CAGAAATAAAAAAAA CCGCCTC AAAT GAGACGG TTTTATATCGAAATT TERM 2665 2318855 - 2318838 - R 100 -9.1 -6.28967 | opp_overlap 2318838 CAGAAATAAAAAAAA CCGCCTC AAAT GAGACGG TTTTATATCGAAATT TERM 2666 2318924 - 2318897 - R 70 -3.6 -5.00339 | gap 1, opp_overlap 2318903, overlap 2318902 2318903 ATTAAGAACTAAAAA TCAA-ATTCTCAA AAA TTGAGATTATTGA CCTTTAACTTCTTTA eno 2320216 - 2318918 - | phosphopyruvate hydratase TERM 2667 2320281 - 2320258 - R 100 -11.8 -4.87318 | overlap 2320250 TTTAAAAGCTAAAAA TAGCCGTCCA ACAT TGGACAGCTA CTCGTAAATCCTATT pyrG 2321935 - 2320295 - | CTP synthase VFMJ11_2183 2322888 - 2322067 - | MazG protein TERM 2668 2322924 - 2322946 + r 100 -10.6 -4.2461 | opp_overlap 2322924 ATAAAAACAAAAAAA GCTGTGACCA TTA TAGTCACAGC TTTCTTAATCACGAT TERM 2669 2322946 - 2322924 - R 100 -12.8 -6.23317 | opp_overlap 2322924 ATAAAAACAAAAAAA GCTGTGACCA TTA TAGTCACAGC TTTCTTAATCACGAT VFMJ11_2184 2324115 - 2322982 - | flagellin TERM 2670 2324258 - 2324235 - R 100 -9 -5.7946 | opp_overlap 2324234 2324235 TTTTCAATAAAAAAA CCGAATATTT TAAA AAATATCCGG CTTTAATCTATCTTA VFMJ11_2185 2326546 - 2324309 - | GTP pyrophosphokinase rumA 2327929 - 2326613 - | 23S rRNA (uracil-5-)-methyltransferase TERM 2671 2328953 - 2328936 - g 74 -4.1 -5.04385 | gap 1, overlap 2328938 GATATTGCGAAAAAA CGC-GCTC AAG AAGCTGCG CGAGTGAAATCTGAG VFMJ11_2187 2328093 - 2330888 + | signal transduction histidine-protein kinase BarA TERM 2672 2330943 - 2330909 - T 87 -12.4 -2.96695 | opp_overlap 2330909 2330914, overlap 2330914 CGTCTGATTAAATGA TAAAACCAATCTAACC GTA AGTTAGGTTGGTTTTA TTTTAAGATTCGAAG TERM 2673 2330909 - 2330943 + T 100 -13.9 -4.19238 | opp_overlap 2330909 2330914, overlap 2330914 CGTCTGATTAAATGA TAAAACCAATCTAAC CGTAA GTTAGGTTGGTTTTA TTTTAAGATTCGAAG TERM 2674 2330938 - 2330914 - T 82 -7.9 -4.63172 | opp_overlap 2330914 2330909, overlap 2330909 GATTAAATGATAAAA CCAATCTAACC GTA AGTTAGGTTGG TTTTATTTTAAGATT TERM 2675 2330914 - 2330938 + T 100 -9.4 -5.10163 | opp_overlap 2330909 2330914, overlap 2330909 GATTAAATGATAAAA CCAATCTAAC CGTAA GTTAGGTTGG TTTTATTTTAAGATT acpS 2331326 - 2330946 - | holo-(acyl-carrier-protein) synthase pdxJ 2332057 - 2331326 - | pyridoxal phosphate biosynthetic protein PdxJ recO 2332770 - 2332054 - | DNA repair protein RecO TERM 2676 2332903 - 2332864 - R 95 -6.7 -5.88565 | opp_overlap 2332899 GTTATAACAAAAAAA TCCCAAACAACTTAA AATAATCTGA TTAAGTTATTCGGGA TCCTGCTCTCGCTCT TERM 2677 2332931 - 2332947 + r 72 -8.1 -3.37975 | overlap 2332927 TCTTATAGTTTCTAG TTTCTAG TTT CTAGAAA TTATAAATCGTCGAT era 2333916 - 2332948 - | GTP-binding protein Era rnc 2334587 - 2333916 - | ribonuclease III VFMJ11_2193 2335551 - 2334598 - | signal peptidase I TERM 2678 2335532 - 2335570 + g 81 -11.8 -2.64595 | opp_overlap 2335533 2335537 2335541, overlap 2335537 2335541 GTTAAGTGTTGCATA ACAAAGAAAGCGAAGACC ATG GATCATCGCTTTCTTTGA GTTGTAATAAAGCTT TERM 2679 2335569 - 2335533 - G 100 -17.5 -3.30159 | opp_overlap 2335532 2335537 2335541, overlap 2335537 2335541 TTAAGTGTTGCATAA CAAAGAAAGCGAAGACC ATG GATCATCGCTTTCTTTG AGTTGTAATAAAGCT TERM 2680 2335565 - 2335537 - G 100 -12.5 -4.30719 | opp_overlap 2335532 2335537 2335541, overlap 2335533 2335541 GTGTTGCATAACAAA GAAAGCGAAGACC ATG GATCATCGCTTTC TTTGAGTTGTAATAA TERM 2681 2335537 - 2335565 + g 84 -10.3 -3.82083 | opp_overlap 2335537 2335533 2335541, overlap 2335532 2335541 GTGTTGCATAACAAA GAAAGCGAAGACC ATG GATCATCGCTTTC TTTGAGTTGTAATAA TERM 2682 2335561 - 2335541 - G 83 -7.5 -4.73677 | opp_overlap 2335537 2335532 2335541, overlap 2335537 2335533 TGCATAACAAAGAAA GCGAAGACC ATG GATCATCGC TTTCTTTGAGTTGTA TERM 2683 2335541 - 2335561 + g 71 -5.3 -4.51765 | opp_overlap 2335541 2335537 2335533, overlap 2335537 2335532 TGCATAACAAAGAAA GCGAAGACC ATG GATCATCGC TTTCTTTGAGTTGTA lepA 2337416 - 2335623 - | GTP-binding protein LepA TERM 2684 2335765 - 2335788 + g 75 -10.4 -3.1855 | opp_overlap 2335761, overlap 2335769 CCACCGTAACATTTT GCAATTACGT TTTT ACGTAGTTGC TTAACTGTTGAACGC VFMJ11_2195 2337991 - 2337506 - | positive regulator of sigma E activity VFMJ11_2196 2338974 - 2337997 - | periplasmic negative regulator of sigmaE TERM 2685 2338888 - 2338921 + g 81 -11.7 -2.76696 | opp_overlap 2338889, overlap 2338887 CATCAGATGCAACAA AGCCTCAGCAGAAGG TTTT TCTTCAGCTGAGGCC ATTATTGGAAAGAAG TERM 2686 2338920 - 2338889 - G 100 -14.5 -4.23615 | opp_overlap 2338888 2338887 ATCAGATGCAACAAA GCCTCAGCAGAAG GTTTTT CTTCAGCTGAGGC CATTATTGGAAAGAA VFMJ11_2197 2339592 - 2338975 - | sigma-E factor negative regulatory protein rpoE 2340200 - 2339622 - | RNA polymerase sigma factor RpoE TERM 2687 2340792 - 2340779 - g 76 -6.7 -4.40358 | opp_overlap 2340779 2340786, overlap 2340786 ATTTATTGCAGAAAA CGCAA AACA TTGCG TTCAATGGTTAATTG nadB 2340513 - 2342132 + | L-aspartate oxidase TERM 2688 2342179 - 2342198 + T 100 -8.6 -6.06529 | opp_overlap 2342179 ACGACTACTTTAAGA GCACCATT AATT GATGGTGC TTTTTTTTATCTATC VFMJ11_2200 2342449 - 2342168 - | hypothetical protein TERM 2689 2342238 - 2342252 + g 73 -7.2 -4.11692 | opp_overlap 2342238 2342237 2342234 AACAAATAAAAGAAC TGCTTA GTG TAAGCA TTTTCAGCATAGATG VFMJ11_2201 2342789 - 2342529 - | protein VV1_1557 TERM 2690 2342891 - 2342905 + H 70 -4.3 -4.75404 | AAGAAGATGCGACAT GAAAC TACTT GTTTC TTTTTACTGACATTT VFMJ11_2202 2342973 - 2343929 + | tRNA-modifying protein YgfZ VFMJ11_2203 2343931 - 2344401 + | regulatory protein TERM 2691 2344615 - 2344634 + F 100 -9.3 -5.9663 | CATCTGTGACTGTTT GCCCGAA CTCTGT TTCGGGC TTTTTTTTAATATTT VFMJ11_2204 2344808 - 2345011 + | hypothetical protein TERM 2692 2345019 - 2345035 + T 100 -8 -6.07374 | opp_overlap 2345019 CTTATTAAAAATAAA GGTAGC ATTGC GCTACC TTTTTTGTTTTTTCT TERM 2693 2345035 - 2345019 - T 95 -8.7 -4.91852 | opp_overlap 2345019 CTTATTAAAAATAAA GGTAGCA TTG CGCTACC TTTTTTGTTTTTTCT VFMJ11_2205 2346264 - 2345056 - | protein VisC ubiH 2347454 - 2346267 - | 2-polyprenyl-6-methoxyphenol 4-hydroxylase VFMJ11_2207 2348035 - 2347466 - | protein VV1_1551 VFMJ11_2208 2348289 - 2348615 + | cell division protein ZapA VFMJ11_2209 2348829 - 2349410 + | 5-formyltetrahydrofolate cyclo-ligase rpiA 2349551 - 2350207 + | ribose 5-phosphate isomerase A TERM 2694 2350271 - 2350288 + F 100 -11.3 -5.49234 | opp_overlap 2350271 TTATTTCATTACAAA CGGTGCT CATT AGCACCG TTTTTTATTAACTAT TERM 2695 2350288 - 2350271 - f 93 -11.3 -3.9712 | opp_overlap 2350271 TTATTTCATTACAAA CGGTGCT CATT AGCACCG TTTTTTATTAACTAT TERM 2696 2350455 - 2350439 - g 71 -3.7 -4.9251 | overlap 2350441 2350453 AAGAAAAAATCAAAA TTCTTCT TTT AGAAGGA TTGCACCCATCTTGT TERM 2697 2351233 - 2351216 - g 71 -4.2 -4.93365 | CTGTAGAACCAAAAA CAAATG CTGATC CATTTG AGTCACCATTACAAA VFMJ11_2211 2350402 - 2351631 + | D-3-phosphoglycerate dehydrogenase TERM 2698 2351640 - 2351672 + T 95 -13.6 -3.38339 | opp_overlap 2351645, overlap 2351645 TCATTAAGATAAATA AAAAATGGGCAGCT TAATT AGCTGCCCATTTTA TTCATATTAAATAAT TERM 2699 2351645 - 2351667 + T 100 -13.5 -4.78753 | opp_overlap 2351645, overlap 2351640 AAGATAAATAAAAAA TGGGCAGCT TAATT AGCTGCCCA TTTTATTCATATTAA TERM 2700 2351667 - 2351645 - T 100 -13.5 -5.7827 | opp_overlap 2351645 2351640 AAGATAAATAAAAAA TGGGCAGCT TAATT AGCTGCCCA TTTTATTCATATTAA VFMJ11_2212 2352384 - 2351692 - | hypothetical protein TERM 2701 2352472 - 2352489 + r 93 -9.9 -4.10188 | opp_overlap 2352472, overlap 2352465 TTAAGGCAAAAAAAA TGCTACC CGAA GGTAGCA TTTAATATTTTGATT TERM 2702 2352489 - 2352472 - R 100 -9.9 -5.86332 | opp_overlap 2352472 2352465 TTAAGGCAAAAAAAA TGCTACC CGAA GGTAGCA TTTAATATTTTGATT VFMJ11_2213 2353375 - 2352515 - | mechanosensitive ion channel VFMJ11_2214 2354395 - 2353616 - | protein VV1_0535 TERM 2703 2354476 - 2354457 - R 100 -7.1 -6.23545 | opp_overlap 2354457 TTCAAATAAAAAAAA GCCACGC TCGAAT GCATGGC TTTATCTATTTATTT TERM 2704 2354495 - 2354521 + r 70 -4.5 -4.73682 | ATCTATTTATTTGAT GGGCAAAAACA ATGAC TATTTTTGCTC TTTTGTATTATCCCA VFMJ11_2215 2355943 - 2354510 - | amino-acid carrier protein AlsT TERM 2705 2354889 - 2354878 - G 73 -2.2 -5.29885 | AAGCGAAAAAGAAAA TCGC TACA GCAA CAAAAATACCGCCCC VFMJ11_2216 2356232 - 2356095 - | hypothetical protein VFMJ11_2217 2356663 - 2356842 + | hypothetical protein TERM 2706 2356882 - 2356843 - T 100 -10.4 -4.21812 | gap 1, opp_overlap 2356854, overlap 2356847 2356854 GTTTATCTAAAATAA TCAATAAAAAAGGAGAG TCTAGCG CTCTCCTTTTTTA-TGA AATGACCTTTACCTA TERM 2707 2356879 - 2356847 - T 95 -12.3 -3.694 | opp_overlap 2356854, overlap 2356843 2356854 ATCTAAAATAATCAA TAAAAAAGGAGAG TCTAGCG CTCTCCTTTTTTA TGAAATGACCTTTAC TERM 2708 2356854 - 2356872 + T 85 -6.7 -5.26316 | opp_overlap 2356847 2356843 2356854 ATAATCAATAAAAAA GGAGAGT CTAGC GCTCTCC TTTTTTATGAAATGA TERM 2709 2356872 - 2356854 - T 86 -6 -5.57396 | opp_overlap 2356854, overlap 2356847 2356843 ATAATCAATAAAAAA GGAGAG TCTAGCG CTCTCC TTTTTTATGAAATGA VFMJ11_2218 2357418 - 2356891 - | putative Hemerythrin HHE cation binding domain subfamily protein ung 2358182 - 2357508 - | uracil-DNA glycosylase TERM 2710 2357980 - 2357962 - G 79 -5.3 -5.10064 | overlap 2357956 2357954 GGTAACACAGAAAAA GACAAAC CATGT GCTTGTC CCTCTCCGTGATAAG TERM 2711 2358174 - 2358184 + g 75 -2.6 -5.31456 | AATAGAGTTCCAAGT TAAT GCC ATTA TTTTTTCTCACTTAG VFMJ11_2220 2359030 - 2358182 - | endonuclease 4 TERM 2712 2358529 - 2358550 + g 70 -8.1 -3.70919 | opp_overlap 2358541, overlap 2358541 GAGATTTATCTTCGA CTTGTTCAA TAAT TTGAGCAAG TTGTTCAAATTTCCA TERM 2713 2359376 - 2359366 - H 74 -6.8 -4.33785 | ATATTTAGAAAATAA CCAC AAA GTGG ACTAGGAGAAAGTAA VFMJ11_2221 2359393 - 2359770 + | formate acetyltransferase TERM 2714 2359829 - 2359791 - T 70 -4.6 -4.66609 | opp_overlap 2359798, overlap 2359798 TAGTCGATTTAAAAA TACGAAACGGCACTCA ATGCTCA TGAGTGCCGTTTTTTT ATGCCAATCACAGTA TERM 2715 2359822 - 2359798 - T 100 -11.5 -4.13748 | opp_overlap 2359798, overlap 2359791 TTTAAAAATACGAAA CGGCACTCA ATGCTCA TGAGTGCCG TTTTTTTATGCCAAT TERM 2716 2359798 - 2359822 + T 100 -11.5 -5.61596 | opp_overlap 2359798 2359791 TTTAAAAATACGAAA CGGCACTCA ATGCTCA TGAGTGCCG TTTTTTTATGCCAAT TERM 2717 2359940 - 2359914 - T 95 -8.8 -5.72616 | opp_overlap 2359914 AGCCATATAAAAAAA GTCCCTTTGATC ATT AACCAAAGAGAC TCATCTATTTCAACC thrC 2361246 - 2359963 - | threonine synthase thrB 2362199 - 2361243 - | homoserine kinase VFMJ11_2224 2364660 - 2362201 - | bifunctional aspartokinase/homoserine dehydrogenase I TERM 2718 2362657 - 2362672 + g 74 -4.7 -4.90778 | ATCATCTCGAGGATC TGGCT CTGTAA AGCCA TTTTCTTTCGCTACG TERM 2719 2364785 - 2364809 + r 100 -16.5 -4.84274 | opp_overlap 2364785 ATTTGCAAAAAAAAA GCCTGCTCTGG TAA TCAGAGCAGGC TTTTTCATATACTTA TERM 2720 2364809 - 2364785 - R 100 -15.8 -6.07627 | opp_overlap 2364785 ATTTGCAAAAAAAAA GCCTGCTCTG GTAAT CAGAGCAGGC TTTTTCATATACTTA TERM 2721 2365047 - 2365033 - R 70 -2.2 -5.29445 | overlap 2365027 CTTGAATAATAAAAA CAAATA TTT TATTTA TTTATAAAATTTATT VFMJ11_2225 2365538 - 2365062 - | regulator of ribonuclease activity A VFMJ11_2226 2365987 - 2366706 + | aerobic respiration control protein ArcA TERM 2722 2366729 - 2366769 + T 100 -16.6 -3.00022 | gap 1, opp_overlap 2366733 2366738, overlap 2366738 TTCTTATATGACTTT TAAATAAAATGCCCAGCTA TCAC TAGCTGGGCATTTT-TTTA TCTATATAACATGGC TERM 2723 2366766 - 2366733 - T 100 -15.5 -3.5882 | opp_overlap 2366729 2366738, overlap 2366738 TATATGACTTTTAAA TAAAATGCCCAGCTA TCAC TAGCTGGGCATTTTT TTATCTATATAACAT TERM 2724 2366738 - 2366761 + T 100 -15.4 -5.77988 | opp_overlap 2366733 2366738, overlap 2366729 GACTTTTAAATAAAA TGCCCAGCTA TCAC TAGCTGGGCA TTTTTTTATCTATAT TERM 2725 2366761 - 2366738 - T 100 -15.4 -4.87803 | opp_overlap 2366738 2366729, overlap 2366733 GACTTTTAAATAAAA TGCCCAGCTA TCAC TAGCTGGGCA TTTTTTTATCTATAT VFMJ11_2227 2367232 - 2366786 - | lipoprotein, putative TERM 2726 2367252 - 2367266 + r 70 -4.2 -4.70879 | TTCCTTACTTATCTT GCTGCT CTA ACCAGC TTTTTAAAATTTGAA VFMJ11_2228 2369607 - 2367241 - | aerobic respiration control sensor protein ArcB TERM 2727 2369416 - 2369395 - G 79 -5.1 -5.05601 | gap 1, overlap 2369398 CACTACAGATAAAAA GAACACAGCC CAA GGC-GTGATC AATAAACCAAAGAAT TERM 2728 2369413 - 2369398 - G 73 -5.4 -4.61353 | gap 1, overlap 2369395 TACAGATAAAAAGAA CACAGCC CAA GGC-GTG ATCAATAAACCAAAG TERM 2729 2369646 - 2369615 - R 79 -9.6 -3.3353 | opp_overlap 2369615, overlap 2369613 2369611 TGCTTCATAAACATA CCCTGATAATATTC ACAT AAATAATATCAGGG TTAGATGCATTTGAG TERM 2730 2369615 - 2369646 + r 71 -8.9 -3.11732 | opp_overlap 2369615 2369613 2369611 TGCTTCATAAACATA CCCTGATAATATT CACATA AATAATATCAGGG TTAGATGCATTTGAG VFMJ11_2229 2370603 - 2369662 - | radical SAM protein, family VFMJ11_2230 2371169 - 2375716 + | ferredoxin-dependent glutamate synthase 1 VFMJ11_2231 2375716 - 2377188 + | glutamate synthase, small subunit TERM 2731 2377221 - 2377242 + F 100 -13.1 -5.38249 | TCCTTCCAAACCTTT GGCCAACAT TTCG ATGTTGGCC TTTTTTCTGCTTCAT VFMJ11_2232 2377427 - 2377789 + | hypothetical protein TERM 2732 2377863 - 2377884 + F 95 -13.1 -3.65522 | opp_overlap 2377863 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTCTTCAAATAAATG TERM 2733 2377884 - 2377863 - f 100 -13.1 -5.14477 | opp_overlap 2377863 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTCTTCAAATAAATG TERM 2734 2378050 - 2378071 + F 100 -13.1 -5.09895 | opp_overlap 2378050 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2735 2378071 - 2378050 - f 100 -13.1 -5.14477 | opp_overlap 2378050 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2736 2378237 - 2378258 + F 100 -13.1 -5.09895 | opp_overlap 2378237 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2737 2378258 - 2378237 - f 100 -13.1 -5.14477 | opp_overlap 2378237 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2738 2378445 - 2378424 - f 100 -13.1 -5.14477 | opp_overlap 2378424 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2739 2378424 - 2378445 + F 100 -13.1 -4.62783 | opp_overlap 2378424 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2740 2380428 - 2380444 + F 85 -9.4 -4.08546 | overlap 2380420 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 2741 2381221 - 2381233 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 2742 2381782 - 2381801 + F 73 -8.6 -3.23708 | overlap 2381785 ACAGCAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 2743 2381912 - 2381924 + F 80 -4.8 -5.24291 | opp_overlap 2381912 GATTTAACTTAATTA CAGC CTTGA GCTG TTTTGTTTTACTTTT TERM 2744 2382215 - 2382234 + F 72 -9.2 -2.65808 | opp_overlap 2382206, overlap 2382212 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT mtnN 2384221 - 2384916 + | MTA/SAH nucleosidase TERM 2745 2384898 - 2384918 + F 78 -7.7 -4.09321 | opp_overlap 2384898 2384897 AATGGTATTAAACAT GGTTACTTT ATT AAAGTAATC TTATTTAATTGAGTC TERM 2746 2384927 - 2384949 + F 95 -8.5 -4.88288 | opp_overlap 2384927 AGTAATCTTATTTAA TTGAGTCAG TTCCT CTGGCTCAA TTTTATCTTCTTTTA TERM 2747 2385494 - 2385506 + G 76 -4.7 -5.01553 | GGTATGGTATTGCTG GCGGC ATT GGCGC TTTTGTTTATCGATT TERM 2748 2385819 - 2385797 - g 70 -2.6 -5.00851 | ATCAAGGAAAGAAAA TCAACCGAGC AAA ACTAGGTGGA AAAATAGCCCCATCA VFMJ11_2237 2384983 - 2385936 + | adenosylcobinamide-phosphate synthase TERM 2749 2385941 - 2385925 - f 72 -5.9 -4.3467 | opp_overlap 2385928 ATGGTCATATTAAAA CAAGGTT TAT AACCTTA TTTCAACAACATCAT TERM 2750 2386542 - 2386556 + G 79 -8.6 -4.05446 | AATCATTAGATTAGC TGCCAT TCG ATGGCA TTTATCCTTACCAAC VFMJ11_2238 2385979 - 2386590 + | membrane protein TERM 2751 2386600 - 2386632 + F 90 -8 -4.93454 | gap 2, opp_overlap 2386602 AAATAATTTGTTTAA TAGGCCATAGCTATAA ATC TTAT-GCT-TGGCCTA TTTTCTATTTATTTC TERM 2752 2387012 - 2387029 + G 77 -4.8 -4.93877 | opp_overlap 2387012 CCTATACCGTAAAAT CAGGGG AAAGCG CCTCTG TTTTATTTAGTCGCA VFMJ11_2239 2386774 - 2388087 + | cell wall endopeptidase, family M23/M37 TERM 2753 2388127 - 2388094 - T 84 -8.3 -4.5774 | opp_overlap 2388099, overlap 2388099 CATGAATAACTAAAA TTAAAGCCCTAATTA GAGA TAATTAGGGCTTTTT TTTAATCAAGTAATT TERM 2754 2388099 - 2388122 + T 100 -12.6 -5.86061 | opp_overlap 2388094 2388099 ATAACTAAAATTAAA GCCCTAATTA GAGA TAATTAGGGC TTTTTTTTAATCAAG TERM 2755 2388122 - 2388099 - T 100 -12.6 -4.27965 | opp_overlap 2388099, overlap 2388094 ATAACTAAAATTAAA GCCCTAATTA GAGA TAATTAGGGC TTTTTTTTAATCAAG VFMJ11_2240 2391227 - 2388129 - | acriflavin resistance plasma membrane protein TERM 2756 2388674 - 2388658 - G 75 -5.9 -4.77567 | AGTGCTATAAGAAAA GCATTCT GCA AAAATGC GGCTGAATTATTTTG TERM 2757 2390164 - 2390150 - G 70 -5.7 -4.42639 | ATATTCCAACTAAAA GAGCA GTTCT TGCTC CTAAAATTGCAATGA VFMJ11_2241 2392349 - 2391237 - | periplasmic component of efflux system TERM 2758 2392464 - 2392441 - R 86 -6.1 -5.55769 | opp_overlap 2392441 TTTTATAATAAAAAA GGTAAGTAA ACTCCG CTACTTACC TTTGAATACTCAGGA VFMJ11_2242 2392822 - 2392481 - | iron-binding protein ErpA TERM 2759 2392835 - 2392851 + H 70 -7.3 -3.79687 | overlap 2392833 2392838 CATTTAAACCTCTCA GGATTGG TTT CCAATTC TATTTTATAGGCGAT TERM 2760 2393134 - 2393148 + G 85 -8.6 -4.41494 | GTGCTTTTGCTGGCG TTGGTG GCT CACCAA TTTTCGTTGAGCGTG hemL 2393049 - 2394344 + | glutamate-1-semialdehyde-2,1-aminomutase TERM 2761 2394366 - 2394385 + F 95 -8.6 -5.23316 | opp_overlap 2394366 TTTTAATCAGATAAA GGCTTTCA TTAT TGAGAGCC TTTTTTCATATAATA TERM 2762 2394385 - 2394366 - f 71 -6.4 -4.1347 | opp_overlap 2394366 TTTTAATCAGATAAA GGCTTTCA TTAT TGAGAGCC TTTTTTCATATAATA TERM 2763 2394853 - 2394843 - g 70 -3.2 -4.84311 | CTTTACATAATAAAA TCAG TGA CCGA CTCCCTAACAGCCCA VFMJ11_2244 2394686 - 2395771 + | hypothetical membrane spanning protein TERM 2764 2395792 - 2395822 + F 79 -5.5 -5.18643 | opp_overlap 2395792 TTTAAAACCATTTAA GGCCACTGA TTTTTCATCATCT TCAGTGGCC TTTTCTTTTCCTTCC VFMJ11_2245 2395889 - 2396908 + | ribosomal RNA small subunit methyltransferase C TERM 2765 2397405 - 2397394 - g 73 -5.8 -4.57837 | opp_overlap 2397393 AGACGCTCGTAAAAA CGCA CAAC TGCG ATATATCACCGGTTC TERM 2766 2397891 - 2397879 - g 77 -7.7 -4.2679 | CAAGTTCCATCAAAA CCTAC TTT GTAGG CCAAGACTCTTATTC TERM 2767 2400242 - 2400223 - g 70 -7.9 -3.62756 | opp_overlap 2400221, overlap 2400221 2400216 AGGGCAAACCAAATA CACTCTC GCAGAA GAGAGTG GATTATGGCGAGTGT VFMJ11_2246 2397074 - 2400454 + | two-component sensor histidine kinase TERM 2768 2400500 - 2400482 - f 81 -7.4 -4.29845 | opp_overlap 2400482 TAACTCAACCTAAAA GTCCGTAA TAT TTACGGGC TTTTTTTTCGCCACA TERM 2769 2400482 - 2400500 + F 100 -9.6 -5.75342 | opp_overlap 2400482 TAACTCAACCTAAAA GTCCGTAA TAT TTACGGGC TTTTTTTTCGCCACA TERM 2770 2400863 - 2400847 - f 71 -5.2 -4.63007 | opp_overlap 2400847 CACAATTACAGAAAA TAACGT TTTTG ACGTTA AAAAAAGTTATTTTG TERM 2771 2401128 - 2401106 - g 71 -9.9 -2.80535 | overlap 2401101 AAAAAAACTACATTA GCTGCTGCA GTACT TGCAGCAAC AACGGGTTTTGCAGC VFMJ11_2247 2401076 - 2402749 + | chitooligosaccharide-binding protein TERM 2772 2402764 - 2402788 + F 84 -11.4 -3.03159 | ATATGTAACTGTCTT TGCGGTGCAC CCTTT GTGCACCGCC TATTCCCCCCCTTCC TERM 2773 2402939 - 2402963 + G 86 -10.1 -4.05446 | GTTCTATTTTATTGC GTTGGTCGTTG CTG CAACGATTAAC TTTATCATTCCGCGA VFMJ11_2248 2402898 - 2403884 + | chitooligosaccharide transport system permease protein VFMJ11_2249 2403887 - 2404912 + | chitooligosaccharide transport system permease protein VFMJ11_2250 2404914 - 2405897 + | dipeptide transport ATP-binding protein DppD VFMJ11_2251 2405920 - 2406915 + | oligopeptide transport ATP-binding protein AppF VFMJ11_2252 2406964 - 2408682 + | endochitinase VFMJ11_2253 2408685 - 2409560 + | N-acetylglucosamine kinase TERM 2774 2409557 - 2409543 - f 70 -4.3 -4.68209 | opp_overlap 2409543 ATGGCAAGAAACAAA GAACA TAACC TGTTC TAGTCTTTTATAAGG TERM 2775 2409645 - 2409625 - g 83 -6.2 -5.06016 | ATCAGACAAAGAAAA GTTAAACC GTTTT GGCTTAAC CTTACATAATTTAAG VFMJ11_2254 2409581 - 2411485 + | beta-hexosaminidase VFMJ11_2255 2411524 - 2413929 + | cellobiose-phosphorylase TERM 2776 2413992 - 2413966 - f 100 -12.4 -4.60797 | opp_overlap 2413970 GTTTTATAGACAAAA GTAAGGCACC TTCTTTT GGTGCCTTAC TATAAAAGGAATTTA TERM 2777 2414988 - 2414963 - g 70 -9.7 -2.71731 | opp_overlap 2414963 2414962 2414965, overlap 2414965 TGTAGGCTTTAAGCA CATCAGCTCCC AAAT GGAAGCGGATG ATTCTTTAATTGGTG VFMJ11_2256 2414010 - 2415422 + | phosphoglucomutase TERM 2778 2415460 - 2415495 + T 90 -8.4 -4.93296 | opp_overlap 2415459 2415463, overlap 2415463 AGATCTCTAAAGAAT TAACCCAGCTAATATA AGAG TCTGTTAGCTGGGTTC TTTTTATACTACTGA TERM 2779 2415463 - 2415492 + T 100 -10.1 -4.56153 | opp_overlap 2415459 2415463, overlap 2415460 TCTCTAAAGAATTAA CCCAGCTAATATA AGAG TCTGTTAGCTGGG TTCTTTTTATACTAC TERM 2780 2415492 - 2415463 - T 71 -7.9 -3.61652 | opp_overlap 2415463 2415460, overlap 2415459 TCTCTAAAGAATTAA CCCAGCTAATATA AGAG TCTGTTAGCTGGG TTCTTTTTATACTAC VFMJ11_2257 2416547 - 2415513 - | Fe(3+) ions import ATP-binding protein FbpC 2 TERM 2781 2415958 - 2415943 - G 73 -5.4 -4.63184 | AATTTATCTGAAAAA GCGAAG GCTT CTTCAC GGCTGTGAGTAACAA VFMJ11_2258 2418178 - 2416547 - | iron(III)-transport system permease protein TERM 2782 2418207 - 2418230 + r 86 -8.2 -4.70659 | opp_overlap 2418207 AGGCTCTTATAAAAA TGATGAGGTA TTGT TACCTCACCA TTTTTAAATATCAAA TERM 2783 2418230 - 2418207 - R 100 -10.4 -4.83169 | opp_overlap 2418207 AGGCTCTTATAAAAA TGATGAGGTA TTGT TACCTCACCA TTTTTAAATATCAAA VFMJ11_2259 2419259 - 2418246 - | iron(III) ABC transporter, periplasmic binding protein TERM 2784 2419400 - 2419373 - R 100 -12.8 -5.24129 | opp_overlap 2419373 CTTTTTTATAAAAAA GAGCCCCAATAC TTGC GCATTAGGGCTC TTGAATTTGTAAGGA TERM 2785 2419373 - 2419400 + r 70 -8.4 -3.32997 | opp_overlap 2419373 CTTTTTTATAAAAAA GAGCCCCAATAC TTGC GCATTAGGGCTC TTGAATTTGTAAGGA VFMJ11_2260 2420657 - 2419428 - | probable ammonium transporter, marine subtype VFMJ11_2261 2421013 - 2420675 - | nitrogen regulatory protein P-II TERM 2786 2421130 - 2421152 + r 91 -12 -3.71873 | opp_overlap 2421130 TAACAATACAAAAAA GGCCGCACTA ATA TAGTGCAGCC TTTCCCTATCAATGA TERM 2787 2421152 - 2421130 - R 100 -14.2 -5.55695 | opp_overlap 2421130 TAACAATACAAAAAA GGCCGCACTA ATA TAGTGCAGCC TTTCCCTATCAATGA VFMJ11_2262 2421544 - 2421176 - | protein VV1_1657 TERM 2788 2421204 - 2421224 + g 72 -9.1 -3.27653 | opp_overlap 2421194, overlap 2421194 2421202 ATAAATGCTTCCCAA CTTTGAAGC ATA GTTTCAAAG TCTTCTAATCCACAT TERM 2789 2421508 - 2421521 + g 85 -6.7 -5.13741 | AATTCGCATGGTATG TACCC TCAA GGGTA TTTTTCTTAAATTCG VFMJ11_2263 2421687 - 2422832 + | carbohydrate diacid regulator TERM 2790 2423977 - 2423957 - g 75 -9.7 -3.28637 | overlap 2423960 TAGCAACAGCATCAA CAACCGCAG GTA CTGCCGTTG CAGCAAGTGTATTTA VFMJ11_2264 2422960 - 2424225 + | gluconate permease VFMJ11_2265 2424238 - 2425368 + | glycerate kinase TERM 2791 2425390 - 2425420 + T 90 -10.7 -3.87815 | gap 1, opp_overlap 2425390 2425397, overlap 2425391 2425397 ATCCAGCCCTCTAAA TA-AAAAAGCAGCC AATT GGCTGCTTTTTGTA TTTATGAAGATAAGG TERM 2792 2425420 - 2425390 - T 89 -10.7 -3.54543 | gap 1, opp_overlap 2425390 2425391 2425397, overlap 2425397 ATCCAGCCCTCTAAA TA-AAAAAGCAGCC AATT GGCTGCTTTTTGTA TTTATGAAGATAAGG TERM 2793 2425391 - 2425418 + T 90 -11.4 -3.52906 | opp_overlap 2425390 2425397, overlap 2425390 2425397 TCCAGCCCTCTAAAT AAAAAAGCAGCC AATT GGCTGCTTTTTG TATTTATGAAGATAA TERM 2794 2425397 - 2425412 + T 100 -10.4 -5.24799 | opp_overlap 2425390 2425397, overlap 2425391 2425390 CCTCTAAATAAAAAA GCAGCC AATT GGCTGC TTTTTGTATTTATGA TERM 2795 2425412 - 2425397 - T 100 -10.4 -5.63517 | opp_overlap 2425397 2425391 2425390, overlap 2425390 CCTCTAAATAAAAAA GCAGCC AATT GGCTGC TTTTTGTATTTATGA acnB 2428024 - 2425436 - | aconitate hydratase 2 TERM 2796 2427902 - 2427917 + g 89 -6.8 -5.2189 | overlap 2427904 AAGAATGACTTCTTC TTCGCC TTGA GGCGGA TTTTTTACTAATTCA VFMJ11_2267 2430514 - 2428244 - | serine protease TERM 2797 2428508 - 2428498 - G 71 -4 -4.84363 | CCAAACTACCAAAAA TCAA GTT TTGA CCGGTTAAACTGTCT TERM 2798 2430663 - 2430642 - H 100 -9.5 -5.24449 | opp_overlap 2430642 TACAAACGTAAAAAA GCCCTAATC TTTC AATTAGGGC TTTTTAAAATAAGTG TERM 2799 2430642 - 2430663 + H 89 -8.8 -4.62783 | opp_overlap 2430642 TACAAACGTAAAAAA GCCCTAAT CTTTCA ATTAGGGC TTTTTAAAATAAGTG TERM 2800 2430851 - 2430830 - H 100 -10.9 -5.14477 | opp_overlap 2430830 TACAGATGTAAAAAA GCCCTAACC TTTC GATTAGGGC TTTTTAAAATAAGTG TERM 2801 2430830 - 2430851 + H 89 -8.7 -4.62783 | opp_overlap 2430830 TACAGATGTAAAAAA GCCCTAACC TTTC GATTAGGGC TTTTTAAAATAAGTG TERM 2802 2431017 - 2431038 + H 100 -13.1 -5.09895 | opp_overlap 2431017 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2803 2431038 - 2431017 - H 100 -13.1 -5.14477 | opp_overlap 2431017 TATAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTTAAATAAGTG TERM 2804 2431225 - 2431204 - H 100 -13.1 -5.14477 | opp_overlap 2431204 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2805 2431204 - 2431225 + H 100 -13.1 -4.62783 | opp_overlap 2431204 TACAGACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 2806 2433246 - 2433262 + H 85 -9.4 -4.08546 | overlap 2433238 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 2807 2434039 - 2434051 + H 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 2808 2434600 - 2434619 + H 73 -8.6 -3.23708 | overlap 2434603 ACAGCAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 2809 2434730 - 2434742 + H 80 -4.8 -5.22258 | opp_overlap 2434730 GATTTAACTTAATTA CAGC CTTGA GCTG TTTTGTTTTACTTTA TERM 2810 2435066 - 2435078 + H 77 -4.9 -5.06451 | opp_overlap 2435066 2435064 GCTACAGACCCAACA TTAAG TCT CTTAA TTTTTTAACCTAATC TERM 2811 2435146 - 2435165 + H 72 -9.2 -2.65808 | opp_overlap 2435137, overlap 2435143 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 2812 2437780 - 2437769 - g 73 -5.8 -4.56597 | opp_overlap 2437768 CTTGGTCTTTAAAAA TGCC AGAT GGCA GTATTGATAAAAAGC VFMJ11_2272 2437333 - 2438958 + | methyl-accepting chemotaxis protein TERM 2813 2439004 - 2438986 - T 82 -9.6 -3.54741 | opp_overlap 2438986 CATTACTCTTTTAAA GCATGCTA CTA CAGCATGC TTTTTTTATGCTATC TERM 2814 2438986 - 2439004 + T 95 -8.9 -5.69473 | opp_overlap 2438986 CATTACTCTTTTAAA GCATGCT ACTAC AGCATGC TTTTTTTATGCTATC TERM 2815 2439088 - 2439067 - T 100 -14.5 -5.71983 | opp_overlap 2439067 TCAAGTATAAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAAAAGTGGCTC TERM 2816 2439067 - 2439088 + T 100 -14.5 -3.55761 | opp_overlap 2439067 TCAAGTATAAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAAAAGTGGCTC TERM 2817 2439364 - 2439380 + T 72 -9.5 -2.62616 | opp_overlap 2439366, overlap 2439366 TCGAACCACCGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 2818 2439584 - 2439626 + T 80 -9.4 -3.55261 | opp_overlap 2439583 2439620, overlap 2439581 2439585 2439620 TTGGGTAAATTATAT GCCTCTCTTAATTATCTA ACATGAA TTGATAATTAAGAGAGGA TCTCTTTTATTAACC TERM 2819 2439585 - 2439625 + T 87 -12.9 -2.72434 | opp_overlap 2439583 2439620, overlap 2439584 2439581 2439620 TGGGTAAATTATATG CCTCTCTTAATTATCTA ACATGAA TTGATAATTAAGAGAGG ATCTCTTTTATTAAC TERM 2820 2439620 - 2439630 + T 74 -5.4 -4.65747 | opp_overlap 2439583 2439620, overlap 2439585 2439584 2439581 TGAATTGATAATTAA GAGA GGA TCTC TTTTATTAACCGTTA mrcB 2442015 - 2439643 - | penicillin-binding protein 1B TERM 2821 2440409 - 2440395 - G 74 -6.4 -4.40181 | opp_overlap 2440395 AAAGAGCATAATAAA GAGGAA CCT CTCCTC TGAATTTACGATCAA hrpB 2444505 - 2442040 - | ATP-dependent helicase HrpB TERM 2822 2444467 - 2444483 + g 79 -9.5 -3.66999 | opp_overlap 2444469 CTTTAATTTCTCAAT CAGTGAT GGG ATCACTG TTTCAATAGGTAACT TERM 2823 2445203 - 2445222 + G 77 -10.8 -2.78384 | opp_overlap 2445202 AAATGGGGTCAATAT TCTCTGCT ACCA AGCAGAGA TGTCATCAAAAGAGA sfsA 2444565 - 2445272 + | sugar fermentation stimulation protein TERM 2824 2445343 - 2445367 + F 76 -4.3 -5.03227 | opp_overlap 2445350, overlap 2445341 2445339 2445346 TACTGGATCTCAATT GATGAAATCAA TAT TTGATTGCCTC TTTTCTTTCTGCTAT TERM 2825 2445538 - 2445526 - g 70 -9.1 -3.12895 | overlap 2445524 2445522 CCGGTGAGGAATACA TGGGC CCT GCCCA AGTTGAACACTTTAC dksA 2445438 - 2445887 + | RNA polymerase-binding protein DksA TERM 2826 2445934 - 2445899 - f 100 -14.2 -3.7948 | opp_overlap 2445900 2445909, overlap 2445900 2445902 2445909 TTAATACCTATCAAA TCATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACGT TTAAATAGTGAATAT TERM 2827 2445900 - 2445933 + F 100 -15.5 -3.68827 | opp_overlap 2445899 2445900 2445902 2445909, overlap 2445909 TAATACCTATCAAAT CATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACG TTTAAATAGTGAATA TERM 2828 2445933 - 2445900 - f 100 -17.7 -2.87206 | opp_overlap 2445900 2445909, overlap 2445899 2445902 2445909 TAATACCTATCAAAT CATAAAAAAGGGAGC ATTC GCTCCCTTTTTTACG TTTAAATAGTGAATA TERM 2829 2445931 - 2445902 - f 100 -16.7 -2.97934 | opp_overlap 2445900 2445909, overlap 2445900 2445899 2445909 ATACCTATCAAATCA TAAAAAAGGGAGC ATTC GCTCCCTTTTTTA CGTTTAAATAGTGAA TERM 2830 2445924 - 2445909 - f 100 -10.4 -5.42265 | opp_overlap 2445909 2445900, overlap 2445902 2445900 2445899 TCAAATCATAAAAAA GGGAGC ATTC GCTCCC TTTTTTACGTTTAAA TERM 2831 2445909 - 2445924 + F 100 -10.4 -5.22039 | opp_overlap 2445902 2445900 2445899 2445909, overlap 2445900 TCAAATCATAAAAAA GGGAGC ATTC GCTCCC TTTTTTACGTTTAAA VFMJ11_2280 2445952 - 2446845 + | glutamyl-tRNA synthetase-related protein VFMJ11_2281 2446866 - 2448293 + | poly(A) polymerase (PAP) (Plasmid copy number protein) folK_1 2448290 - 2448775 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2832 2448857 - 2448843 - g 77 -8.6 -3.82262 | AAGTGGAAGCAAGAA GGCAAA AAA TTTGCC ACTGTTACAGCATAT panB 2448798 - 2449592 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase panC 2449602 - 2450477 + | pantoate--beta-alanine ligase TERM 2833 2450534 - 2450496 - T 100 -17 -5.45802 | opp_overlap 2450501, overlap 2450501 TTTCTAAAAGAAAAA TAAAAGGGCTGAAGATAA TCA CTATCTTCAGCCCTTTTT TCATCTATGATTTTA TERM 2834 2450529 - 2450501 - T 100 -16.9 -5.51078 | opp_overlap 2450501, overlap 2450496 AAAAGAAAAATAAAA GGGCTGAAGATAA TCA CTATCTTCAGCCC TTTTTTCATCTATGA TERM 2835 2450501 - 2450529 + T 100 -16.2 -5.24989 | opp_overlap 2450501 2450496 AAAAGAAAAATAAAA GGGCTGAAGATA ATCAC TATCTTCAGCCC TTTTTTCATCTATGA VFMJ11_2285 2451348 - 2450578 - | ABC transporter permease protein VFMJ11_2286 2452265 - 2451348 - | ABC transporter, ATP-binding protein TERM 2836 2452367 - 2452389 + r 78 -7.6 -4.21141 | opp_overlap 2452367 TCAATAATAAAAAAA CCGCAGAGTG ATT CACCCTACGG TTTGATTTATTCCAA TERM 2837 2452389 - 2452367 - R 100 -12 -5.95946 | opp_overlap 2452367 TCAATAATAAAAAAA CCGCAGAGTG ATT CACCCTACGG TTTGATTTATTCCAA VFMJ11_2287 2454073 - 2452418 - | sulfate transporter VFMJ11_2288 2454366 - 2455022 + | carbonate dehydratase TERM 2838 2455054 - 2455020 - T 80 -10.3 -3.14463 | AATGTTGGTGATGAA TGATAAAAGGGAA ATAATATCG TTCCCTTTTATCA TAAAAAATATATACA VFMJ11_2289 2455394 - 2455143 - | hypothetical protein TERM 2839 2455855 - 2455830 - R 100 -12 -5.20216 | opp_overlap 2455830 TATATCAGTAAAAAA GCCAAAGAAC ATGAAG GTTCTTTGGC TTTATTCTTCTACTT TERM 2840 2455830 - 2455855 + r 100 -12 -4.54323 | opp_overlap 2455830 TATATCAGTAAAAAA GCCAAAGAAC ATGAAG GTTCTTTGGC TTTATTCTTCTACTT hpt 2456460 - 2455930 - | hypoxanthine phosphoribosyltransferase VFMJ11_2291 2456834 - 2457439 + | LitR, transcriptional regulator TERM 2841 2457569 - 2457533 - T 100 -13.4 -3.62849 | gap 1, opp_overlap 2457533 2457543, overlap 2457543 TTCAGGAAATGACAA TAATAAAAAACCGCTGA TTTC TCAGCGGTTTTTT-TTA TGTTTTAACAAATGC TERM 2842 2457533 - 2457569 + T 100 -13.4 -3.64716 | gap 1, opp_overlap 2457533 2457543, overlap 2457543 TTCAGGAAATGACAA TAATAAAAAACCGCTGA TTTC TCAGCGGTTTTTT-TTA TGTTTTAACAAATGC TERM 2843 2457543 - 2457560 + T 100 -11.3 -6.18768 | opp_overlap 2457533 2457543, overlap 2457533 GACAATAATAAAAAA CCGCTGA TTTC TCAGCGG TTTTTTTTATGTTTT TERM 2844 2457560 - 2457543 - T 100 -11.3 -5.68489 | opp_overlap 2457543 2457533, overlap 2457533 GACAATAATAAAAAA CCGCTGA TTTC TCAGCGG TTTTTTTTATGTTTT lpdA 2459026 - 2457599 - | dihydrolipoyl dehydrogenase TERM 2845 2458243 - 2458261 + g 72 -3.1 -5.16572 | gap 1, overlap 2458243 2458244 GAACTGCATCGTAAC GCT-CAGC TTCA GCTGGGGC TTTTTTGCCTTCCAT TERM 2846 2459281 - 2459250 - R 73 -8.8 -3.18681 | opp_overlap 2459251, overlap 2459235 2459251 2459254 2459257 CCTTAAGCTTATTAA GCAATAAGGTGACC TATT AGCCACCTTATTGT TTGTTTCAATAACCG TERM 2847 2459280 - 2459251 - R 86 -12.3 -2.50994 | opp_overlap 2459251, overlap 2459235 2459250 2459254 2459257 CTTAAGCTTATTAAG CAATAAGGTGACC TATT AGCCACCTTATTG TTTGTTTCAATAACC TERM 2848 2459251 - 2459280 + r 93 -9.4 -4.46112 | opp_overlap 2459235 2459251 2459250 2459254 2459257 CTTAAGCTTATTAAG CAATAAGGTGAC CTATTA GCCACCTTATTG TTTGTTTCAATAACC TERM 2849 2459277 - 2459254 - R 72 -8.2 -3.40639 | opp_overlap 2459251, overlap 2459235 2459251 2459250 2459257 AAGCTTATTAAGCAA TAAGGTGACC TATT AGCCACCTTA TTGTTTGTTTCAATA aceF 2461187 - 2459301 - | dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex aceE 2463878 - 2461215 - | pyruvate dehydrogenase (acetyl-transferring), homodimeric type TERM 2850 2461850 - 2461862 + g 70 -9.1 -3.13164 | opp_overlap 2461849 TCTCACCATACATAC GACGG ATA CCGTC TTGCATGATTACCGC VFMJ11_2295 2464674 - 2463934 - | transcriptional regulator of pyruvate dehydrogenase complex TERM 2851 2464654 - 2464674 + g 85 -9.1 -4.19258 | CAGCCTTTCTAACTC TTGTTCGAT TAC ATCGGACAA TTTTGGCTGGCGTAT TERM 2852 2464771 - 2464783 + r 83 -6.3 -4.93877 | opp_overlap 2464771 TCGTCACTTTAATAA TTGGT ATT ACCAA TTTTATTTGATGCAA VFMJ11_2296 2465542 - 2464991 - | protein AmpD nadC 2465656 - 2466543 + | nicotinate-nucleotide diphosphorylase (carboxylating) TERM 2853 2466593 - 2466564 - f 93 -10.9 -3.95555 | opp_overlap 2466570, overlap 2466570 AGAATTATCGATAAA CAAAAAGCCAGTA AATT TACTGGCTTTTTT TATTTTTAGTACACA TERM 2854 2466587 - 2466570 - f 100 -9.9 -5.38958 | opp_overlap 2466570, overlap 2466564 ATCGATAAACAAAAA GCCAGTA AATT TACTGGC TTTTTTTATTTTTAG TERM 2855 2466570 - 2466587 + F 100 -9.9 -6.20267 | opp_overlap 2466570 2466564 ATCGATAAACAAAAA GCCAGTA AATT TACTGGC TTTTTTTATTTTTAG VFMJ11_2298 2466887 - 2467339 + | fimbrial protein (Pilin) (Strain P1) TERM 2856 2467737 - 2467703 - g 74 -5.1 -4.67048 | CCAGCGGAAAACAAA TTGAATTAGTACTTG CGGAT CAAGGACAAATCCAA GCCGCTATTCGACGA pilB 2467342 - 2469030 + | type IV-A pilus assembly ATPase PilB TERM 2857 2469603 - 2469623 + G 74 -6.2 -4.37013 | CAAGCATGGTTTTTT TAGTTGCG ATAAC CGTAACTA TTTTAATGCTTACTT TERM 2858 2470153 - 2470134 - g 70 -3.6 -4.89521 | ACATGCTAAATAAAA TTGCTCAT GTTT ATGAGGAA GATGTTGATAATACC VFMJ11_2300 2469050 - 2470288 + | type IV pilus assembly protein TapC VFMJ11_2301 2470393 - 2471280 + | bacterial Peptidase A24 N-terminal domain family protein coaE 2471277 - 2471900 + | dephospho-CoA kinase VFMJ11_2303 2471921 - 2472652 + | protein VV1_1620 VFMJ11_2304 2472660 - 2472869 + | hypothetical protein TERM 2859 2472890 - 2472906 + T 100 -10.9 -5.96219 | opp_overlap 2472890 ATTCCAAATAAAAAA GCGATCA TCA TGATCGC TTTTTTTTATGCCTA TERM 2860 2472906 - 2472890 - T 100 -10.9 -5.64421 | opp_overlap 2472890 ATTCCAAATAAAAAA GCGATCA TCA TGATCGC TTTTTTTTATGCCTA VFMJ11_2305 2473341 - 2472940 - | mutator MutT protein TERM 2861 2473376 - 2473404 + r 100 -10.4 -4.65895 | opp_overlap 2473349 2473381, overlap 2473381 CATATCACGCTTATA AAAAAGCCGCTA AATGA TAGCGGCTTTTA TTTTTCAATGAAGAA TERM 2862 2473399 - 2473381 - R 100 -10.3 -5.252 | opp_overlap 2473376 2473381 CACGCTTATAAAAAA GCCGCTA AATGA TAGCGGC TTTTATTTTTCAATG TERM 2863 2473381 - 2473399 + r 100 -10.3 -5.2853 | opp_overlap 2473381, overlap 2473376 CACGCTTATAAAAAA GCCGCTA AATGA TAGCGGC TTTTATTTTTCAATG secA 2476156 - 2473433 - | preprotein translocase, SecA subunit TERM 2864 2474100 - 2474120 + g 70 -8.3 -3.30619 | opp_overlap 2474098 2474096 2474100, overlap 2474115 TATTGACCAAATAGA CCTTCAAGA ACT TCTTGACGG TTATAACCGATCATT TERM 2865 2474120 - 2474100 - G 70 -8.3 -3.30418 | opp_overlap 2474100 2474115, overlap 2474098 2474096 TATTGACCAAATAGA CCTTCAAGA ACT TCTTGACGG TTATAACCGATCATT TERM 2866 2475040 - 2475050 + g 73 -5.4 -4.50058 | opp_overlap 2475040 GGAATGTAATAGAAG CCAA TGT TTGG TTTTCATTCTGAATC TERM 2867 2476278 - 2476303 + H 70 -8.3 -3.16079 | overlap 2476267 CTTACCTTATGGGGA TGAGGCTTTGA TTTT TCAAGGCCACA TTAGATAGTTGTGTT VFMJ11_2307 2476492 - 2476959 + | hypothetical protein TERM 2868 2477011 - 2476967 - T 90 -11.8 -3.42301 | gap 1, opp_overlap 2476967 2476981, overlap 2476981 AAAAATAAGAATATA TCAGATACAAAAAAGCCAAGC ATTC GCTTGGCTTTTTTA-ATTTGA TGATGTGTTACTTAC TERM 2869 2476967 - 2477011 + T 84 -11.8 -2.78606 | gap 1, opp_overlap 2476967 2476981, overlap 2476981 AAAAATAAGAATATA TCAGATACAAAAAAGCCAAGC ATTC GCTTGGCTTTTTTA-ATTTGA TGATGTGTTACTTAC TERM 2870 2476981 - 2476998 + T 100 -11.3 -5.40004 | opp_overlap 2476967 2476981, overlap 2476967 ATCAGATACAAAAAA GCCAAGC ATTC GCTTGGC TTTTTTAATTTGATG TERM 2871 2476998 - 2476981 - T 100 -11.3 -5.43414 | opp_overlap 2476981 2476967, overlap 2476967 ATCAGATACAAAAAA GCCAAGC ATTC GCTTGGC TTTTTTAATTTGATG lpxC 2477904 - 2477023 - | UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase ftsZ 2479296 - 2478046 - | cell division protein FtsZ ftsA 2480591 - 2479329 - | cell division protein FtsA TERM 2872 2480071 - 2480122 + g 70 -9.6 -2.57985 | opp_overlap 2480083 CCACAACGTTCTACC GCTTTCACTATATTACGTGCCATA TCAT TATGGCAGGTAATAAGATGAACGC TAACTTCCATTCTCA TERM 2873 2480110 - 2480083 - G 73 -10 -2.78463 | opp_overlap 2480071 ACCGCTTTCACTATA TTACGTGCCATA TCAT TATGGCAGGTAA TAAGATGAACGCTAA VFMJ11_2311 2481345 - 2480593 - | cell division protein FtsQ murC 2483033 - 2481570 - | UDP-N-acetylmuramate--alanine ligase murG 2484113 - 2483049 - | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase ftsW 2485299 - 2484097 - | cell division protein FtsW murD 2486624 - 2485302 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 2874 2485786 - 2485768 - G 70 -8.2 -3.65199 | AATGTTGCATCTAAA TTGATACC AAC GGCATCAA GTAATGCAATTGCAA mraY 2487708 - 2486626 - | phospho-N-acetylmuramoyl-pentapeptide-transferase VFMJ11_2317 2489057 - 2487708 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2875 2488846 - 2488856 + g 73 -6.8 -4.25256 | opp_overlap 2488845 ATTACTTGAGGAAGT GTCG TAT CGAC TTCTTTTGATACAAG VFMJ11_2318 2490544 - 2489063 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 2876 2489816 - 2489845 + g 77 -8 -4.16943 | TAACCATTGGCAGCC CACTTGATCATC CGCATT GATGATTGAGTG TTTTGGCCTATGAGA TERM 2877 2489884 - 2489869 - G 70 -3.2 -4.94972 | opp_overlap 2489853, overlap 2489863 2489862 TATGAGAAGTAAAAA GTAGCT TTTT AGCTTC AGCATAGTTTTCCAT VFMJ11_2319 2492291 - 2490552 - | peptidoglycan synthetase FtsI TERM 2878 2492228 - 2492207 - G 79 -5.1 -5.13648 | opp_overlap 2492215 2492220, overlap 2492221 GAAAGACAAAGAAAA CAATAACGC CAAA GCGCCACTG GATAAAAGTTGGCGG ftsL 2492614 - 2492288 - | cell division protein FtsL mraW 2493561 - 2492611 - | S-adenosyl-methyltransferase MraW TERM 2879 2493724 - 2493687 - R 100 -16.5 -4.18303 | opp_overlap 2493687 AGCAGAAAGCACAAA GCCCACCATAACACTAC CGAA ATAGTACTATGGTGGGC TAAGTTAGAGCCGAC TERM 2880 2493687 - 2493724 + r 82 -11.4 -2.52464 | opp_overlap 2493687 AGCAGAAAGCACAAA GCCCACCATAACACTA CCGAAA TAGTACTATGGTGGGC TAAGTTAGAGCCGAC VFMJ11_2322 2495055 - 2494192 - | hypothetical protein TERM 2881 2494253 - 2494269 + g 77 -5.1 -5.00616 | overlap 2494251 ACACCATGTATTTCA GCAGC CATTGCC GCTGC TTTTTTAAGCGGAAG TERM 2882 2496422 - 2496386 - g 82 -10.9 -3.59649 | AAACAAGGCTTTAAA CACCCACTATACCTTGC ACC ACAAGGCACTATGGGTG AGCGATTAAGCCAAG VFMJ11_2323 2495234 - 2497045 + | GS60 antigen TERM 2883 2497143 - 2497174 + G 86 -8.2 -4.84918 | gap 1, opp_overlap 2497124 2497140 CAGTCAAAAACCGGA GAG-CTTGATCTC ATCATGC GAGATCAAGACTC TTTTGTGTTTGTGGA VFMJ11_2324 2497026 - 2497397 + | hypothetical protein TERM 2884 2497436 - 2497423 - g 71 -5.3 -4.60648 | overlap 2497419 AAAATATCAAAGAAA GCTTT ACTG AAAGC ATTCAAATCCAAATT VFMJ11_2325 2497401 - 2497991 + | phosphoheptose isomerase TERM 2885 2498152 - 2498139 - g 72 -3.1 -5.01497 | ACTATCAGACAAAAA CCTCT CTTT AGAAG CAACAGGGCTTGCGA VFMJ11_2326 2497996 - 2498583 + | 21 kDa hemolysin TERM 2886 2498625 - 2498608 - T 100 -9.9 -5.59534 | opp_overlap 2498608 AAGCACAATAAAAAA GCCTACA TTTC TGTAGGC TTTTTAGTAGGATTC TERM 2887 2498608 - 2498625 + T 100 -9.9 -4.74801 | opp_overlap 2498608 AAGCACAATAAAAAA GCCTACA TTTC TGTAGGC TTTTTAGTAGGATTC sspB 2499117 - 2498653 - | stringent starvation protein B VFMJ11_2328 2499752 - 2499117 - | stringent starvation protein A TERM 2888 2499865 - 2499843 - R 100 -16.4 -4.99638 | opp_overlap 2499846 ATAGTGACACAAAAA CAATGGAGGC TAA GCCTCCATTG CGTACAATTAACGAT TERM 2889 2499846 - 2499862 + r 87 -12.3 -3.07994 | opp_overlap 2499843 GTGACACAAAAACAA TGGAGGC TAA GCCTCCA TTGCGTACAATTAAC VFMJ11_2329 2500632 - 2499895 - | cytochrome c1 VFMJ11_2330 2501897 - 2500629 - | cytochrome B petA 2502490 - 2501897 - | ubiquinol-Cytochrome c reductase, iron-sulfur subunit TERM 2890 2502412 - 2502396 - G 72 -4.3 -4.71776 | overlap 2502398 CAAGATTTAATAAAA GGTACGG CCA CCGCAGC AGCTCCTAGCCCACC TERM 2891 2502835 - 2502806 - R 100 -19.5 -4.53475 | opp_overlap 2502811, overlap 2502811 AGCTCACAAAAACAA CAAAAGCCCAGCA TAAA TGCTGGGCTTTTG ACCACAATACCAAAG TERM 2892 2502811 - 2502830 + r 100 -13.6 -4.08216 | opp_overlap 2502806 2502811 ACAAAAACAACAAAA GCCCAGCA TAAA TGCTGGGC TTTTGACCACAATAC TERM 2893 2502830 - 2502811 - R 100 -13.6 -5.18715 | opp_overlap 2502811, overlap 2502806 ACAAAAACAACAAAA GCCCAGCA TAAA TGCTGGGC TTTTGACCACAATAC TERM 2894 2502874 - 2502845 - R 86 -10.9 -3.27475 | gap 1, opp_overlap 2502853, overlap 2502846 2502850 2502867 CTTTTGACCACAATA CCAAAGGAGCTTTG AAA CAAAACTCC-TTGG AAGCGTAAAATTAAC TERM 2895 2502874 - 2502846 - R 80 -11.1 -2.56271 | opp_overlap 2502853, overlap 2502845 2502850 2502867 TTTTGACCACAATAC CAAAGGAGCTTTG AAA CAAAACTCCTTGG AAGCGTAAAATTAAC TERM 2896 2502870 - 2502850 - R 93 -10.5 -3.98159 | opp_overlap 2502853, overlap 2502845 2502846 2502867 GACCACAATACCAAA GGAGCTTTG AAA CAAAACTCC TTGGAAGCGTAAAAT rpsI 2503277 - 2502885 - | ribosomal protein S9 rplM 2503721 - 2503293 - | ribosomal protein L13 VFMJ11_2334 2505146 - 2504001 - | ATPase TERM 2897 2505368 - 2505352 - g 71 -3.7 -4.91459 | overlap 2505340 2505342 2505361 CAAGATTTAGAAAAA TCCAAAT ATG AATTGGA GCAATACCGTCAAGA VFMJ11_2335 2505232 - 2505687 + | hypothetical protein TERM 2898 2505701 - 2505673 - f 70 -3.9 -4.83715 | overlap 2505692 AACGCAAAAAAAGAA GATAAAATCGCTT AAA ATACGATGTTATC GATGAACTTTCTCAA TERM 2899 2505967 - 2505978 + G 76 -4.4 -5.0917 | TAAGCGTCATATACC CGAA CAGT TTCG TTTCTTTTTTGGTCC VFMJ11_2336 2505767 - 2507134 + | protease DegQ TERM 2900 2507140 - 2507170 + F 70 -6.9 -3.83066 | opp_overlap 2507142 2507146, overlap 2507142 AATTAAGTAACCTAG AAGCAAGCACTCA TTCTT TAAGTGCTTGCTC TTTCATCCTCTACTT TERM 2901 2507142 - 2507168 + F 79 -9.5 -3.49482 | opp_overlap 2507142 2507146, overlap 2507140 TTAAGTAACCTAGAA GCAAGCACTCA TTCTT TAAGTGCTTGC TCTTTCATCCTCTAC TERM 2902 2507168 - 2507142 - f 89 -11.7 -3.45134 | opp_overlap 2507142 2507140, overlap 2507146 TTAAGTAACCTAGAA GCAAGCACTCA TTCTT TAAGTGCTTGC TCTTTCATCCTCTAC TERM 2903 2508070 - 2508043 - g 75 -10 -3.1082 | opp_overlap 2508050, overlap 2508045 2508049 TATCGATGGAAGAGA CATTAACCCTGC CATG GCAAGATTAATG AATGCAGATAATATC degS 2507249 - 2508316 + | periplasmic serine peptidase DegS TERM 2904 2508343 - 2508322 - T 100 -11.7 -5.87996 | opp_overlap 2508322 TAATGAATAAAAAAA TAGCGCATT AAAA AATGCGCTA TTTTTGTATCTAAGC TERM 2905 2508322 - 2508343 + T 100 -11.7 -5.03994 | opp_overlap 2508322 TAATGAATAAAAAAA TAGCGCATT AAAA AATGCGCTA TTTTTGTATCTAAGC parC 2510647 - 2508371 - | DNA topoisomerase IV, A subunit parE 2512530 - 2510650 - | DNA topoisomerase IV, B subunit TERM 2906 2512636 - 2512680 + r 77 -8.8 -3.61268 | opp_overlap 2512635 2512633 2512644 2512646, overlap 2512640 CTTTGTATTAAAGAT TGTATAGATACTGTGTCTCT TGCGT AGAGAAACAGTAACTATAAA TTTAGAAATTGAATA TERM 2907 2512640 - 2512676 + r 75 -9.6 -2.65279 | opp_overlap 2512635 2512633 2512644 2512646, overlap 2512636 GTATTAAAGATTGTA TAGATACTGTGTCTCT TGCGT AGAGAAACAGTAACTA TAAATTTAGAAATTG VFMJ11_2340 2513186 - 2512674 - | esterase YqiA TERM 2908 2512893 - 2512915 + g 75 -10 -2.99204 | overlap 2512887 2512891 2512898 TTCCATGTGCTTCTC TTCAAGAAGA TAT TCTTCTTGAG TATATGGATTTACTT VFMJ11_2341 2514082 - 2513258 - | 3',5'-cyclic-nucleotide phosphodiesterase TERM 2909 2514008 - 2513990 - G 77 -10.3 -3.35992 | AGGTACGCCAAGTAA TGCGCCA TCTTC TGGCGCA AACAAGTGGGTATCT VFMJ11_2342 2514529 - 2514098 - | phosphohydrolase VFMJ11_2343 2515169 - 2514531 - | adp-ribose pyrophosphatase VFMJ11_2344 2515402 - 2516727 + | TolC protein TERM 2910 2516772 - 2516802 + T 100 -12.8 -4.4715 | opp_overlap 2516777, overlap 2516777 ATTAGCACACAAACA AAAAAGCCACATTA CTA TAATGTGGCTTTTC TTTTATCCGTTGCCG TERM 2911 2516777 - 2516797 + T 100 -12.7 -5.19275 | opp_overlap 2516777, overlap 2516772 CACACAAACAAAAAA GCCACATTA CTA TAATGTGGC TTTTCTTTTATCCGT TERM 2912 2516797 - 2516777 - T 100 -12.7 -5.76237 | opp_overlap 2516777 2516772 CACACAAACAAAAAA GCCACATTA CTA TAATGTGGC TTTTCTTTTATCCGT VFMJ11_2345 2518252 - 2516822 - | bifunctional protein HldE glnE 2521246 - 2518388 - | glutamate-ammonia-ligase adenylyltransferase TERM 2913 2518747 - 2518759 + g 74 -6.3 -4.44277 | TTTTTTCTCGCATAT CAAGA ACA TCTTG TTTTAGCTTTTCATC TERM 2914 2520642 - 2520629 - G 73 -2.4 -5.18357 | TAATCGAGTAAAAAA TTGC GCATTG GCAA TGCTACGGCGAGCGC TERM 2915 2520738 - 2520760 + g 70 -8.5 -3.38361 | gap 1, opp_overlap 2520751 2520752 CCACCACCCAATTTC CCCATGC-CA ATAA TGAGCATGGG TTGCTCTTCACCTTT TERM 2916 2521427 - 2521405 - R 89 -7 -5.27938 | opp_overlap 2521405 AGCCGCAAACAAAAA CGCCTACA ACTGGAG TGCAGGCG TTATTAATTTTAAAA VFMJ11_2347 2522984 - 2521452 - | methyl-accepting chemotaxis protein VFMJ11_2348 2523160 - 2523924 + | potassium channel protein TERM 2917 2523960 - 2523909 - T 100 -15.6 -4.28774 | gap 1, opp_overlap 2523916 2523921, overlap 2523916 TGAGTTAATGGAAAA TAAAAAAGAGAAGTAATCAGCCCTA ATA TAGGG-TGATGACTTCTCTTCTCTA TTAGGTCTAACTCTT TERM 2918 2523916 - 2523953 + T 100 -13.7 -3.69884 | gap 1, opp_overlap 2523909 2523916, overlap 2523921 ATGGAAAATAAAAAA GAGAAGTAATCAGCCCTA ATA TAGGG-TGATGACTTCTC TTCTCTATTAGGTCT TERM 2919 2523953 - 2523916 - T 100 -13.7 -5.80951 | gap 1, opp_overlap 2523916 2523921, overlap 2523909 ATGGAAAATAAAAAA GAGAAGTAATCAGCCCTA ATA TAGGG-TGATGACTTCTC TTCTCTATTAGGTCT VFMJ11_2349 2525515 - 2523998 - | putative adenylate cyclase family TERM 2920 2526050 - 2526060 + G 75 -5.4 -4.8066 | AAATTCCAAGCTCCA TGCA GGA TGCA TTTTTAGCTTATGTT VFMJ11_2350 2525701 - 2526381 + | hypothetical protein TERM 2921 2527042 - 2527018 - g 73 -2.1 -5.1861 | GTTACGATCAAAAAA GGTCTAAAACA TGT TGGCTTACACC TAAGTAATGGTGAGG VFMJ11_2351 2526409 - 2527689 + | low-affinity inorganic phosphate transporter TERM 2922 2527739 - 2527720 - f 76 -7.9 -3.95051 | opp_overlap 2527720 CAACAATGGCACAAA GAGGAGA GTAATA TCTCCTC TTTTCTTGCATCTGG TERM 2923 2527720 - 2527739 + F 83 -7.9 -4.70169 | opp_overlap 2527720 CAACAATGGCACAAA GAGGAGA GTAATA TCTCCTC TTTTCTTGCATCTGG VFMJ11_2352 2527858 - 2528469 + | arylsulfatase TERM 2924 2528486 - 2528521 + T 84 -11.4 -3.08867 | opp_overlap 2528478 2528495, overlap 2528495 CGATAAGTTTTATGT CATAAAAAAGCTCAGA CTAT TCTGAGCTTTTTTGTA TGTGTTACAAATTAC TERM 2925 2528495 - 2528512 + T 100 -9.9 -5.46276 | opp_overlap 2528495, overlap 2528486 TTATGTCATAAAAAA GCTCAGA CTAT TCTGAGC TTTTTTGTATGTGTT TERM 2926 2528512 - 2528495 - T 100 -9.9 -5.26316 | opp_overlap 2528495 2528486 TTATGTCATAAAAAA GCTCAGA CTAT TCTGAGC TTTTTTGTATGTGTT VFMJ11_2353 2529213 - 2528533 - | general secretion pathway protein B VFMJ11_2354 2530771 - 2529215 - | general secretion pathway protein A VFMJ11_2355 2530910 - 2532133 + | multifunctional CCA protein TERM 2927 2532151 - 2532183 + T 78 -7.7 -4.18303 | opp_overlap 2532158, overlap 2532180 TATACGCTACGCTGA CTAGAAACTAGAACG CTT CGCTCTAGTCCCTAG TTTCTAGTTTCTAGT TERM 2928 2532176 - 2532158 - T 87 -9.6 -3.96624 | opp_overlap 2532151 TACGCTGACTAGAAA CTAGAACG CTT CGCTCTAG TCCCTAGTTTCTAGT uppP 2533004 - 2532201 - | undecaprenyl-diphosphatase UppP TERM 2929 2532464 - 2532448 - G 73 -2.1 -5.34309 | ATTAGGAAAGAAAAA CGTGCCG CAG CCTCACG AGTAAATCCAAGATA folK_2 2533502 - 2533014 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2930 2533328 - 2533300 - G 70 -9.7 -2.55015 | opp_overlap 2533300, overlap 2533307 ATCGCACGTAATTGA GTTACAAGTTCAT TTA ATGAACACGTAAC TTCTAATTCAGCGAC folB 2533852 - 2533499 - | dihydroneopterin aldolase TERM 2931 2533613 - 2533596 - G 83 -6.3 -5.1485 | CAAGGAACAGAAAAA CGAGTCA TGAT TAACTCG GCAATTTCTTCTGCT TERM 2932 2533925 - 2533902 - H 84 -5.4 -5.50723 | opp_overlap 2533902 2533906 CCATCAAAAGAAAAA CAACGTAATA TTGA TATTACTTTG CTTAATGTGTCGAGC TERM 2933 2534567 - 2534544 - g 74 -4.6 -4.91977 | overlap 2534545 CATGAAAATATAAAA CGTTTCTTTG AAGG CAAAGAGACA AAAATATGGCAAAGA VFMJ11_2359 2533998 - 2534594 + | hypothetical protein TERM 2934 2534602 - 2534587 - T 85 -6.8 -5.28942 | opp_overlap 2534587 TATGGCAAAGAAAAA GGGACT AAAT AGCCCC TTTATATAGATAACG TERM 2935 2534625 - 2534642 + T 79 -4.1 -5.38326 | opp_overlap 2534617, overlap 2534626 AGATAACGATCTTTT ATGATCC AAAC GGATCAC TTTTTATTTAATTGG TERM 2936 2534626 - 2534641 + T 73 -7.6 -3.81369 | opp_overlap 2534617, overlap 2534625 GATAACGATCTTTTA TGATCC AAAC GGATCA CTTTTTATTTAATTG VFMJ11_2360 2535662 - 2534646 - | O-sialoglycoprotein endopeptidase rpsU 2535890 - 2536105 + | ribosomal protein S21 VFMJ11_2362 2536135 - 2536578 + | GatB/Yqey domain protein TERM 2937 2536628 - 2536598 - f 100 -18.4 -4.42653 | opp_overlap 2536598 2536601 ACTCTATTTATAAAA CAAGCCGTGCTATC TTT GATTGCACGGCTTG TTTGTATCTACAGGA TERM 2938 2536598 - 2536628 + F 100 -18.4 -4.12532 | opp_overlap 2536598, overlap 2536601 ACTCTATTTATAAAA CAAGCCGTGCTATC TTT GATTGCACGGCTTG TTTGTATCTACAGGA TERM 2939 2536601 - 2536625 + F 100 -14.3 -4.18674 | opp_overlap 2536598, overlap 2536598 CTATTTATAAAACAA GCCGTGCTATC TTT GATTGCACGGC TTGTTTGTATCTACA TERM 2940 2537887 - 2537874 - g 71 -6.7 -3.98826 | CCACTAATTGATAAA GTACC AGGT GGTAC ATTACGCCTTTATTT TERM 2941 2538028 - 2538015 - g 76 -4.5 -5.04733 | CAACCAGAAATAAAA CGCAC GGCT ATGCG AGAAGTAATAACCTT dnaG 2536653 - 2538416 + | DNA primase TERM 2942 2539578 - 2539567 - g 79 -5.8 -4.89063 | GCATCGAAAAAGAAA CAGG TTTA CCTG TAGAGAACATTAAAG TERM 2943 2540286 - 2540250 - g 79 -10.4 -3.59247 | gap 1, opp_overlap 2540285, overlap 2540253 2540284 2540285 GAAGAAGTGGGTAAA CAATTTGACGTAACACG TGAG CGTATT-CGTCAAATCG AAGCAAAAGCGCTTC TERM 2944 2540283 - 2540253 - g 77 -8.5 -3.9243 | gap 1, overlap 2540250 GAAGTGGGTAAACAA TTTGACGTAACACG TGAG CGTATT-CGTCAAA TCGAAGCAAAAGCGC VFMJ11_2364 2538516 - 2540357 + | RNA polymerase sigma factor RpoD (Sigma-70) TERM 2945 2540408 - 2540391 - T 88 -6.9 -4.99056 | opp_overlap 2540391, overlap 2540385 TAATAGAATCAAAAA GGTGGGC TTAG GCTCACC TTTTTTCGATCTGAA TERM 2946 2540391 - 2540408 + T 100 -9.1 -5.1287 | opp_overlap 2540391 2540385 TAATAGAATCAAAAA GGTGGGC TTAG GCTCACC TTTTTTCGATCTGAA TERM 2947 2540624 - 2540597 - T 100 -15.8 -5.40004 | opp_overlap 2540597 CACCAAATTAAAAAA GGCTGATAAGTA TTTT TACTTATCAGCC TTTTTACTTTTTATT TERM 2948 2540597 - 2540624 + T 100 -15.8 -5.24003 | opp_overlap 2540597 CACCAAATTAAAAAA GGCTGATAAGTA TTTT TACTTATCAGCC TTTTTACTTTTTATT VFMJ11_2366 2540784 - 2540635 - | hypothetical protein VFMJ11_2367 2540969 - 2541589 + | outer membrane protein VFMJ11_2368 2541734 - 2543278 + | long-chain-fatty-acid--CoA ligase VFMJ11_2369 2543361 - 2543762 + | hypothetical protein TERM 2949 2543783 - 2543769 - f 78 -7.1 -4.36774 | opp_overlap 2543769 AATCAATAATATAAA GGCAC TTAAT GTGCC TTTTTTATTTCGAAT TERM 2950 2543769 - 2543783 + F 93 -7.1 -5.64421 | opp_overlap 2543769 AATCAATAATATAAA GGCAC TTAAT GTGCC TTTTTTATTTCGAAT pyk_1 2544148 - 2545560 + | pyruvate kinase TERM 2951 2545622 - 2545595 - f 87 -11.4 -3.16079 | opp_overlap 2545601, overlap 2545601 AATACAACTAGTTAA TAAAAAGAGGGC TTTC GCCCTCTTTTTT TATGAAATTTTCTTG TERM 2952 2545601 - 2545616 + F 100 -10.4 -5.63504 | opp_overlap 2545601 2545595 ACTAGTTAATAAAAA GAGGGC TTTC GCCCTC TTTTTTTATGAAATT TERM 2953 2545616 - 2545601 - f 100 -10.4 -5.11063 | opp_overlap 2545601, overlap 2545595 ACTAGTTAATAAAAA GAGGGC TTTC GCCCTC TTTTTTTATGAAATT TERM 2954 2546329 - 2546303 - g 74 -6 -4.35339 | opp_overlap 2546303 AGAGCAAGCAACAAA GCATTTAAATAA CCA TTATTCAAAAGC TATTGATCTTATATC VFMJ11_2371 2545737 - 2546363 + | transcriptional regulator TERM 2955 2546374 - 2546395 + T 100 -13.1 -4.07687 | opp_overlap 2546374 CTTAAAAACAAAAAA GCCAGACAT CATG ATGTCTGGC TTTTACCAAAACAGT TERM 2956 2546395 - 2546374 - T 100 -13.1 -5.93252 | opp_overlap 2546374 CTTAAAAACAAAAAA GCCAGACAT CATG ATGTCTGGC TTTTACCAAAACAGT VFMJ11_2372 2546541 - 2546410 - | hypothetical protein VFMJ11_2373 2548570 - 2546675 - | sensory box/ggdef family protein TERM 2957 2548670 - 2548646 - R 100 -12.3 -4.76963 | opp_overlap 2548646 2548650, overlap 2548651 TTACACAAGATAAAA TAAAACCCTTC TGA GAAGGGCTTTA TTTATAGGATGAAGG TERM 2958 2548646 - 2548670 + r 83 -10.1 -3.89346 | opp_overlap 2548646 2548651, overlap 2548650 TTACACAAGATAAAA TAAAACCCTTC TGA GAAGGGCTTTA TTTATAGGATGAAGG TERM 2959 2548650 - 2548666 + r 76 -6.5 -4.56367 | opp_overlap 2548646 2548651, overlap 2548646 ACAAGATAAAATAAA ACCCTTC TGA GAAGGGC TTTATTTATAGGATG TERM 2960 2548665 - 2548651 - R 100 -10 -5.26907 | opp_overlap 2548650 2548646, overlap 2548646 CAAGATAAAATAAAA CCCTTC TGA GAAGGG CTTTATTTATAGGAT ilvN 2549197 - 2548703 - | acetolactate synthase, small subunit ilvB_1 2550918 - 2549197 - | acetolactate synthase, large subunit, biosynthetic type TERM 2961 2551134 - 2551163 + r 72 -8 -3.38584 | opp_overlap 2551139, overlap 2551139 ATTTTAACCAAATAA AAAAAGCCAACT CTTTCA AGTTGGCTTTTA TTGATTAAATCGTAT TERM 2962 2551139 - 2551158 + r 83 -7.9 -4.79174 | opp_overlap 2551139, overlap 2551134 AACCAAATAAAAAAA GCCAACT CTTTCA AGTTGGC TTTTATTGATTAAAT TERM 2963 2551158 - 2551139 - R 100 -8.6 -6.01187 | opp_overlap 2551134 2551139 AACCAAATAAAAAAA GCCAACTC TTTC AAGTTGGC TTTTATTGATTAAAT VFMJ11_2376 2553030 - 2551192 - | putative long-chain-fatty-acid--CoA ligase family protein TERM 2964 2553246 - 2553226 - R 100 -10.5 -5.75342 | opp_overlap 2553226 TGTGTTTAAAAAAAA GGTTACGTA AAA TACGCAACC TTTTTCTATTATCAT TERM 2965 2553226 - 2553246 + r 90 -8.3 -5.16133 | opp_overlap 2553226 TGTGTTTAAAAAAAA GGTTACGTA AAA TACGCAACC TTTTTCTATTATCAT TERM 2966 2553302 - 2553283 - R 71 -6.4 -4.17089 | opp_overlap 2553294 TTTAAAGGCTTAAAA CATCATGC CTTT GCTTGATG CAACCACTTCTTCAC VFMJ11_2377 2554248 - 2553277 - | probable HTH-type transcriptional regulator LeuO TERM 2967 2554544 - 2554526 - R 100 -11.8 -5.85178 | opp_overlap 2554526 AATAGGTAAAAAAAA GCCATACA AGG TGTATGGC TTAATAAATATACAT TERM 2968 2554526 - 2554544 + r 89 -11.8 -3.2056 | opp_overlap 2554526 AATAGGTAAAAAAAA GCCATACA AGG TGTATGGC TTAATAAATATACAT VFMJ11_2378 2556991 - 2554574 - | bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii) TERM 2969 2555278 - 2555262 - G 70 -8.7 -3.2963 | opp_overlap 2555271 ATTACCGCTTGATAA TCAGCAC TTG GCGCTGA GCCAGCAACTTTATT metB 2558157 - 2556991 - | O-succinylhomoserine (thiol)-lyase VFMJ11_2380 2558504 - 2558824 + | met Apo-repressor, MetJ TERM 2970 2560773 - 2560763 - g 70 -5.4 -4.3739 | GAGGCCCTTATAAAA TGCA ATA TGCA ACAAAAGACTGGGGC VFMJ11_2381 2558944 - 2560965 + | glycosidase TERM 2971 2561013 - 2561032 + F 74 -9.4 -3.09234 | opp_overlap 2561006 2561000 2560999, overlap 2561004 ATGAACTATTTCTAA CCAACAAT GTCT ATTGTTGG TTAGATCACATTTCT VFMJ11_2382 2561376 - 2562719 + | maltoporin TERM 2972 2562753 - 2562736 - f 75 -8.3 -3.85909 | opp_overlap 2562736 TGAGTTAAAGTGAAA GGCGGCC AAAT GGCTGCC TTTTTGCGTTTATTA TERM 2973 2562736 - 2562753 + F 100 -10.5 -4.86939 | opp_overlap 2562736 TGAGTTAAAGTGAAA GGCGGCC AAAT GGCTGCC TTTTTGCGTTTATTA TERM 2974 2563419 - 2563403 - g 71 -3.7 -4.88067 | AGCTATCGATAAAAA CGCTT TCATTAC AAGCG CATAAACAAACACCT VFMJ11_2383 2562793 - 2563620 + | maltose operon periplasmic protein TERM 2975 2563668 - 2563642 - T 100 -13.9 -5.96894 | opp_overlap 2563642 ACTTAAATAAAAAAA GGCTTCTAACT TAATT AGTTAGAAGCC TTTTCTACATAAAAG TERM 2976 2563642 - 2563668 + T 100 -13.9 -4.42386 | opp_overlap 2563642 ACTTAAATAAAAAAA GGCTTCTAACT TAATT AGTTAGAAGCC TTTTCTACATAAAAG VFMJ11_2384 2564941 - 2563694 - | NADP-dependent malic enzyme TERM 2977 2565185 - 2565168 - R 100 -9.1 -5.76633 | opp_overlap 2565166 2565168 TCAGATATAAAAAAA GGAGCCC TATT GGACTCC TCTTTTATCGGAAAT TERM 2978 2565168 - 2565185 + r 70 -6.9 -3.79687 | opp_overlap 2565168, overlap 2565166 TCAGATATAAAAAAA GGAGCCC TATT GGACTCC TCTTTTATCGGAAAT rpmE 2565425 - 2565207 - | ribosomal protein L31 TERM 2979 2567283 - 2567257 - g 73 -7.4 -3.99775 | AGCGATTAAGAACAA TGAATACCAAAT TTT AATTGGTACTCA AATGCTAGCAAAAGG VFMJ11_2386 2565665 - 2567866 + | primosomal protein N' (ATP-dependent helicase PriA)(Replication factor Y) VFMJ11_2387 2568058 - 2569065 + | transcriptional repressor CytR TERM 2980 2569335 - 2569309 - g 85 -3.7 -5.57396 | overlap 2569311 ACAACTAAGAAAAAA GGCGCTAAACA ACCTA TGTCTAACGGC TCTACGCCGTGGAAA ftsN 2569237 - 2569812 + | cell division protein FtsN TERM 2981 2569874 - 2569856 - f 77 -5.9 -4.70772 | opp_overlap 2569856, overlap 2569851 ACATATTTAATAAAA GGAGCCC ATTGA GTGCTCC TTTTTTCTATCTATT TERM 2982 2569856 - 2569874 + F 86 -5.9 -5.46276 | opp_overlap 2569851 2569856 ACATATTTAATAAAA GGAGCCC ATTGA GTGCTCC TTTTTTCTATCTATT hslV 2569992 - 2570516 + | heat shock protein HslVU, ATP-dependent protease subunit HslV hslU 2570536 - 2571870 + | heat shock protein HslVU, ATPase subunit HslU TERM 2983 2571917 - 2571892 - T 100 -10.4 -4.73092 | opp_overlap 2571892 ATAACTTAAAATAAA GCCTCGCTAG GGTTAA CTTGCGAGGC TTTTTAATATTAATT TERM 2984 2571892 - 2571917 + T 100 -10.4 -4.90136 | opp_overlap 2571892 ATAACTTAAAATAAA GCCTCGCTAG GGTTAA CTTGCGAGGC TTTTTAATATTAATT VFMJ11_2391 2572356 - 2571952 - | OsmC/Ohr family protein TERM 2985 2572405 - 2572386 - H 70 -4.3 -4.68645 | overlap 2572387 TACTTAAAAGGAAAA CTCGTGA TCCATT TCACGAA ACTGTGCCCTTGGTC VFMJ11_2392 2572602 - 2573234 + | cyclic nucleotide-binding domain protein TERM 2986 2573293 - 2573254 - T 100 -15.2 -3.40522 | opp_overlap 2573265, overlap 2573259 2573265 ACTTCGTTACCATAA GCAAATAAAAACGCAGCT CAAT AGCTGCGTTTTTTTATGC CTAGAGATGACAGCT TERM 2987 2573288 - 2573259 - T 100 -12.3 -4.02108 | opp_overlap 2573265, overlap 2573254 2573265 GTTACCATAAGCAAA TAAAAACGCAGCT CAAT AGCTGCGTTTTTT TATGCCTAGAGATGA TERM 2988 2573265 - 2573282 + T 100 -11.3 -5.64274 | opp_overlap 2573259 2573254 2573265 ATAAGCAAATAAAAA CGCAGCT CAAT AGCTGCG TTTTTTTATGCCTAG TERM 2989 2573282 - 2573265 - T 100 -11.3 -5.39681 | opp_overlap 2573265, overlap 2573259 2573254 ATAAGCAAATAAAAA CGCAGCT CAAT AGCTGCG TTTTTTTATGCCTAG VFMJ11_2393 2574103 - 2573309 - | hypothetical protein astD 2575572 - 2574115 - | succinylglutamic semialdehyde dehydrogenase astA 2576601 - 2575585 - | arginine N-succinyltransferase TERM 2990 2576178 - 2576167 - G 72 -4.4 -4.77036 | TGCCATCATCAAAAA TCGA GCTT TCGA CATCAATCGCCCATT TERM 2991 2576651 - 2576630 - R 100 -10.2 -4.87389 | opp_overlap 2576627 2576630 GATGCCAAAAACAAA GGCAACTC GACCAT GAGTTGCC TAATATTCTTTAAAG TERM 2992 2576630 - 2576651 + r 81 -10.9 -2.90309 | opp_overlap 2576630, overlap 2576627 GATGCCAAAAACAAA GGCAACTCG ACCA TGAGTTGCC TAATATTCTTTAAAG VFMJ11_2396 2577883 - 2576669 - | acetylornithine/succinyldiaminopimelate aminotransferase TERM 2993 2578002 - 2578013 + r 76 -4.4 -5.07053 | opp_overlap 2578002 AATACAATTCAATGA CTGA TAAA TCAG TTTTTTAGAATAGTT TERM 2994 2578053 - 2578035 - R 74 -6 -4.47873 | opp_overlap 2578035 2578036, overlap 2578036 AGAATAGTTATAAAA TCAAGCTA TCG TAGCTTGC TTTATATGTAAACGA TERM 2995 2578036 - 2578052 + r 74 -9.5 -3.07198 | opp_overlap 2578035 2578036, overlap 2578035 GAATAGTTATAAAAT CAAGCTA TCG TAGCTTG CTTTATATGTAAACG TERM 2996 2578052 - 2578036 - R 77 -9.5 -3.27639 | opp_overlap 2578036 2578035, overlap 2578035 GAATAGTTATAAAAT CAAGCTA TCG TAGCTTG CTTTATATGTAAACG VFMJ11_2397 2578766 - 2578188 - | para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) TERM 2997 2578802 - 2578827 + r 89 -11.9 -3.16742 | opp_overlap 2578802 TGGATAAAATAAAAA TTGCTCGCAGG TCAA CCTACGAGCAA TTGATGGAACTTAAA TERM 2998 2578827 - 2578802 - R 100 -14.1 -5.54907 | opp_overlap 2578802 TGGATAAAATAAAAA TTGCTCGCAGG TCAA CCTACGAGCAA TTGATGGAACTTAAA trpS 2579871 - 2578855 - | tryptophanyl-tRNA synthetase TERM 2999 2579901 - 2579928 + r 77 -10.1 -3.02314 | opp_overlap 2579901, overlap 2579898 2579895 2579906 GTTTAACTGTAAAAA TTAAATGATCC GCTGTG GGATCATTTAA TGGTTATTCTATATA TERM 3000 2579928 - 2579901 - R 100 -10.1 -4.66833 | opp_overlap 2579901 2579898 2579895 2579906 GTTTAACTGTAAAAA TTAAATGATCC GCTGTG GGATCATTTAA TGGTTATTCTATATA gph 2580674 - 2579991 - | phosphoglycolate phosphatase, bacterial rpe 2581357 - 2580680 - | ribulose-phosphate 3-epimerase TERM 3001 2581429 - 2581405 - R 83 -10.7 -2.98088 | opp_overlap 2581403, overlap 2581397 CGCTAAATTGATATA GCGCAATCGAT TAA ATCGACGGCGC AATTCTACCTGATAT VFMJ11_2401 2582355 - 2581525 - | retron EC67 DNA adenine methylase VFMJ11_2402 2583961 - 2582438 - | hypothetical protein TERM 3002 2582784 - 2582797 + g 80 -2.4 -5.59655 | overlap 2582774 GTTACTGTAGAAACC GATG TTTTTT CATC TTTTTTCTTACTTTC TERM 3003 2583550 - 2583562 + g 73 -5.5 -4.57569 | overlap 2583542 TAATTTGCCAATTTG GTGCA GAT TGCGC TTTTTGAACCAATAA aroB 2585058 - 2583970 - | 3-dehydroquinate synthase TERM 3004 2585007 - 2584979 - G 93 -10.9 -4.85129 | overlap 2584980 ATTACAGATGAAAAA TGCGCCGGGTTGC AAA ACAACTCGGCGCC GATAGAGATGGGATA TERM 3005 2585006 - 2584980 - G 100 -14.4 -3.49993 | overlap 2584979 TTACAGATGAAAAAT GCGCCGGGTTGC AAA ACAACTCGGCGC CGATAGAGATGGGAT aroK_1 2585613 - 2585095 - | shikimate kinase VFMJ11_2405 2587526 - 2585838 - | fimbrial assembly protein PilQ TERM 3006 2586149 - 2586176 + g 72 -3.5 -5.02074 | TATCTGGGGTAATCT GCGGTGTTA CCATCAAGCT TAATACCGC TTTTTTAAACGATAC TERM 3007 2586835 - 2586861 + g 73 -10.2 -2.87136 | opp_overlap 2586828, overlap 2586839 TCAGATGATAGCGCA GCCAGCTCAGAT GCC ATTTGAGCTTGC TCTAATACTTGCTGC VFMJ11_2406 2588119 - 2587613 - | pilus expression protein VFMJ11_2407 2588702 - 2588124 - | pili assembly protein PilO VFMJ11_2408 2589268 - 2588702 - | pili assembly protein PilN VFMJ11_2409 2590254 - 2589253 - | pili assembly protein PilM VFMJ11_2410 2590477 - 2592891 + | penicillin-binding protein 1A TERM 3008 2592917 - 2592940 + T 100 -12.5 -5.27923 | opp_overlap 2592917 TCACTTTAATAAAAA GGCACGCTA GATATG TAGCGTGCC TTTTTTATAAGCTTA TERM 3009 2592940 - 2592917 - T 100 -12.5 -5.08601 | opp_overlap 2592917 TCACTTTAATAAAAA GGCACGCTA GATATG TAGCGTGCC TTTTTTATAAGCTTA VFMJ11_2411 2593857 - 2592958 - | hydrogen peroxide-inducible genes activator VFMJ11_2412 2594037 - 2594765 + | hybrid peroxiredoxin hyPrx5 (Thioredoxin reductase) TERM 3010 2594790 - 2594814 + F 75 -10 -2.76583 | opp_overlap 2594791, overlap 2594789 TAACCGTTCATGAAA AGTAGCCCAC AAATC GTGGGCTACC ATTTCAAACTCTTCT TERM 3011 2594813 - 2594791 - f 100 -14.2 -4.25848 | opp_overlap 2594790 2594789 AACCGTTCATGAAAA GTAGCCCACA AAT CGTGGGCTAC CATTTCAAACTCTTC VFMJ11_2413 2594860 - 2596326 + | dihydrolipoamide dehydrogenase TERM 3012 2596378 - 2596357 - f 95 -8.8 -5.63236 | opp_overlap 2596357 ACTGAAAAATAAAAA GACCAATG TTTGCG CATTGGTC TTTTTGCATTTAAAG TERM 3013 2596357 - 2596378 + F 100 -9.5 -4.81249 | opp_overlap 2596357 ACTGAAAAATAAAAA GACCAATGT TTGC GCATTGGTC TTTTTGCATTTAAAG VFMJ11_2414 2596554 - 2596679 + | hypothetical protein TERM 3014 2596693 - 2596721 + T 71 -8.9 -3.1162 | opp_overlap 2596694 GAGTAGATAAAATAA AGCCCCAATAC CATATAA GTATTGGGGCC TCTTAGAATCTTTCT TERM 3015 2596720 - 2596694 - T 100 -13.1 -4.84146 | opp_overlap 2596693 AGTAGATAAAATAAA GCCCCAATACC ATATA AGTATTGGGGC CTCTTAGAATCTTTC argH 2598721 - 2596847 - | argininosuccinate lyase TERM 3016 2597853 - 2597867 + g 76 -3.5 -5.24796 | overlap 2597854 TTACCACGGATTAAC TCCAG TGCAT CTGGG TTTTTCTTCTGTGGC TERM 3017 2598964 - 2598934 - R 100 -14.9 -5.4251 | opp_overlap 2598932 GTTATATACAAAAAA TCGAAGCCCGTTT ATATA AAACGAGCTTCGA CATAGTGTAAAACAA argG 2600230 - 2599019 - | argininosuccinate synthase argB 2601069 - 2600287 - | acetylglutamate kinase argC 2602089 - 2601085 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 3018 2603346 - 2603362 + G 72 -9.5 -3.03575 | opp_overlap 2603345 2603346 2603354, overlap 2603354 GTTCTATTGAACAAG CTCATCA ACC TGATGAG TATCTGGCTTTTTCT TERM 3019 2603362 - 2603346 - g 71 -9.5 -2.80344 | opp_overlap 2603346 2603354, overlap 2603345 2603354 GTTCTATTGAACAAG CTCATCA ACC TGATGAG TATCTGGCTTTTTCT argE 2602298 - 2603434 + | acetylornithine deacetylase (ArgE) ppc 2603614 - 2606244 + | phosphoenolpyruvate carboxylase TERM 3020 2606280 - 2606295 + T 95 -6.8 -5.85244 | opp_overlap 2606280 TCCTTCCTAATTTAA GGTCAC TTCG GTGGCC TTTTTTATTTTAGTT TERM 3021 2606378 - 2606345 - T 88 -7.6 -4.87626 | opp_overlap 2606348 2606353 2606372, overlap 2606353 CTTCAACATCAAAAA CAAAAAAAGTCGCT ACCATG AGCGACTTTTATTA TAAGTAATAATAAAT TERM 3022 2606370 - 2606353 - T 100 -7 -6.20267 | opp_overlap 2606348 2606353, overlap 2606345 TCAAAAACAAAAAAA GTCGCT ACCATG AGCGAC TTTTATTATAAGTAA TERM 3023 2606353 - 2606370 + T 83 -7 -4.79352 | opp_overlap 2606353 2606345, overlap 2606348 TCAAAAACAAAAAAA GTCGCT ACCATG AGCGAC TTTTATTATAAGTAA metF 2607282 - 2606395 - | 5,10-methylenetetrahydrofolate reductase TERM 3024 2607525 - 2607507 - R 100 -10.3 -6.15717 | opp_overlap 2607507 TAAAGATAAAAAAAA CGCTAGC ACAAG GCTAGCG TTTTAAATCATAAGT TERM 3025 2607507 - 2607525 + r 100 -10.3 -4.21462 | opp_overlap 2607507 TAAAGATAAAAAAAA CGCTAGC ACAAG GCTAGCG TTTTAAATCATAAGT rplI 2608000 - 2607551 - | ribosomal protein L9 TERM 3026 2607947 - 2607975 + g 70 -5.9 -4.4009 | overlap 2607949 AGCTTTAACGTTAAC TTGGTCGCCAAGG CTA CCTAGGTTACCGA TTTTATCAAGTAGAA rpsR 2608268 - 2608041 - | ribosomal protein S18 TERM 3027 2608221 - 2608241 + g 72 -8.3 -3.53012 | AATCTCTTGTACGCC TTCTGCAGT AAA ACGGCAGAA TTTACGACGACGGAA VFMJ11_2424 2608427 - 2608284 - | primosomal replicatioN protein n rpsF 2608975 - 2608595 - | ribosomal protein S6 TERM 3028 2609171 - 2609152 - R 91 -4.3 -5.84381 | opp_overlap 2609152 TTACCAAGAAAAAAA GAGAATG AAAAAA CATCCTC TTTTTTGAGCTTATT VFMJ11_2426 2609973 - 2609230 - | RNA methyltransferase, TrmH family, group 3 TERM 3029 2610030 - 2610012 - R 71 -7.4 -3.64822 | opp_overlap 2610012 ATTTGTTTATCTAAA TGGGGC TATAACC GCCCCA TTATCGAAATTACTT rnr 2612547 - 2610040 - | ribonuclease R TERM 3030 2611251 - 2611271 + g 71 -5.3 -4.62872 | overlap 2611254 2611266 TTTCAAACTCAATCG CACCACGCG CTT CACGTGCTG TTTTTAGCACTTGAT TERM 3031 2612510 - 2612527 + g 71 -6.3 -4.23723 | TATTTTTCAGCTTCT CGATCTT GAAA AGGATCG TTTTGAATAATCTTA VFMJ11_2428 2613066 - 2612641 - | HTH-type transcriptional regulator NsrR VFMJ11_2429 2613173 - 2614357 + | globin domain protein TERM 3032 2614407 - 2614383 - T 100 -15.1 -4.84529 | opp_overlap 2614383 GTAGAAATGCAAAAA CGCCCAATGAC ATA ATCATTGGGCG TTTTTTCGAGTTGAT TERM 3033 2614383 - 2614407 + T 100 -14.4 -5.10029 | opp_overlap 2614383 GTAGAAATGCAAAAA CGCCCAATGA CATAA TCATTGGGCG TTTTTTCGAGTTGAT VFMJ11_2430 2615091 - 2614459 - | sodium-type polar flagellar protein MotX TERM 3034 2615006 - 2615025 + g 75 -10 -3.08133 | opp_overlap 2615005, overlap 2615008 2615010 TTTTCGGTATAAATT GGGATCGG CTCT CCGATCTC TTCGCTAGCTGCATA TERM 3035 2615008 - 2615023 + g 70 -9 -3.09878 | opp_overlap 2615005, overlap 2615006 2615010 TTCGGTATAAATTGG GATCGG CTCT CCGATC TCTTCGCTAGCTGCA TERM 3036 2615070 - 2615085 + g 71 -7.6 -3.85704 | overlap 2615067 CCACCAAACATGCCG CTACGA GGTG TCGTAG TTTCATAATTCATCA TERM 3037 2615158 - 2615173 + r 75 -4.7 -5.02074 | opp_overlap 2615158 ATCTTTAGACAAAAT TTGCC CTAAGT GGCAA TTTTTTGCCCACTAG TERM 3038 2615307 - 2615273 - R 74 -9.5 -3.00923 | opp_overlap 2615276 2615282, overlap 2615282 CTGGAATACCAGACA TAAAAAAAACCAGCT ACATG AGCTGGTTTTTCTTT CATTCACTAAGCGAT TERM 3039 2615276 - 2615304 + r 82 -9 -3.93288 | opp_overlap 2615273 2615282, overlap 2615282 GAATACCAGACATAA AAAAAACCAGCT ACATG AGCTGGTTTTTC TTTCATTCACTAAGC TERM 3040 2615282 - 2615298 + r 90 -8 -5.38326 | opp_overlap 2615273 2615282, overlap 2615276 CAGACATAAAAAAAA CCAGCT ACATG AGCTGG TTTTTCTTTCATTCA TERM 3041 2615298 - 2615282 - R 100 -8 -6.06529 | opp_overlap 2615282 2615276, overlap 2615273 CAGACATAAAAAAAA CCAGCT ACATG AGCTGG TTTTTCTTTCATTCA purA_2 2616638 - 2615322 - | adenylosuccinate synthetase VFMJ11_2432 2617001 - 2616816 - | hypothetical protein TERM 3042 2617044 - 2617069 + r 74 -6.1 -4.48823 | opp_overlap 2617047, overlap 2617047 TATACGCTAAATACA AAACAAGGCCC CGAA GGACCTTGTTA TTTTATACGTTAATT TERM 3043 2617047 - 2617066 + r 81 -7.8 -4.34789 | opp_overlap 2617047, overlap 2617044 ACGCTAAATACAAAA CAAGGCCC CGAA GGACCTTG TTATTTTATACGTTA TERM 3044 2617066 - 2617047 - R 100 -10 -4.79451 | opp_overlap 2617047 2617044 ACGCTAAATACAAAA CAAGGCCC CGAA GGACCTTG TTATTTTATACGTTA hflC 2617983 - 2617099 - | HflC protein TERM 3045 2617717 - 2617728 + g 76 -2.2 -5.37043 | CTTAACATATGAATC GATG ATAA CGTC TTTTTTCTCTGACGT VFMJ11_2434 2619194 - 2617986 - | protease activity modulator HflK TERM 3046 2619109 - 2619123 + g 81 -5.6 -5.06414 | opp_overlap 2619083 TCTGGTGGACCTTGA TCACGG CCA CCGCGA TTTTTATTACCCCAA hflX_2 2620532 - 2619231 - | GTP-binding protein HflX VFMJ11_2436 2620839 - 2620573 - | protein hfq miaA 2621876 - 2620944 - | tRNA delta(2)-isopentenylpyrophosphate transferase VFMJ11_2438 2623854 - 2621869 - | DNA mismatch repair protein MutL TERM 3047 2623005 - 2622993 - G 70 -2.7 -5.09762 | TCTCAATAAATAAAA TATAC GCT GCATA TTGGTTTGCAGGCAA TERM 3048 2623722 - 2623756 + g 93 -11.5 -4.40572 | opp_overlap 2623725, overlap 2623725 CACCTTTTTCGATAT CAATATCGATGCGAG TTGCT CCCGCATCGATACTG TTTTCTACCAATTCT TERM 3049 2623753 - 2623725 - G 93 -14 -3.25823 | opp_overlap 2623722 2623725 CTTTTTCGATATCAA TATCGATGCGAG TTGCT CCCGCATCGATA CTGTTTTCTACCAAT TERM 3050 2623725 - 2623753 + g 81 -11.8 -2.87598 | opp_overlap 2623725, overlap 2623722 CTTTTTCGATATCAA TATCGATGCGAG TTGCT CCCGCATCGATA CTGTTTTCTACCAAT VFMJ11_2439 2625605 - 2623866 - | N-acetylmuramoyl-L-alanine amidase TERM 3051 2624877 - 2624889 + g 72 -3.5 -5.04385 | opp_overlap 2624877 GTGAATAGAAACTAA TAAAT GTG ATTTA TTTTTTCGAGCTATC TERM 3052 2624946 - 2624935 - G 70 -5.8 -4.35693 | opp_overlap 2624934 AAATTTACAAAATAA TCGC CACT GCGA GTCATTACCGCTCGC TERM 3053 2625567 - 2625540 - G 95 -9.3 -5.4251 | TGCAGATACAAAAAA GCTACTTGTTG AAAGAA CAACAAATAGC GTATACCAAATAATT VFMJ11_2440 2626063 - 2625599 - | hypothetical protein VFMJ11_2441 2626276 - 2627391 + | iron-sulfur cluster binding protein, putative TERM 3054 2627875 - 2627894 + T 79 -8 -4.08216 | GGATTTGTAGTGGGG TTAATGCT TCAC AGCATTAA TTTTAAAGAAAATAA TERM 3055 2627902 - 2627942 + T 100 -18.7 -3.53012 | opp_overlap 2627902 2627907 2627912, overlap 2627907 2627912 AGCATTAATTTTAAA GAAAATAAAAGCGCTGAAT ATG ATTCAGCGCTTTTATTTTG TTTGGAGCGACACAC TERM 3056 2627942 - 2627902 - T 100 -18.7 -3.68244 | opp_overlap 2627902 2627907 2627912, overlap 2627907 2627912 AGCATTAATTTTAAA GAAAATAAAAGCGCTGAAT ATG ATTCAGCGCTTTTATTTTG TTTGGAGCGACACAC TERM 3057 2627937 - 2627907 - T 100 -18.6 -4.90525 | opp_overlap 2627902 2627907 2627912, overlap 2627902 2627912 TAATTTTAAAGAAAA TAAAAGCGCTGAAT ATG ATTCAGCGCTTTTA TTTTGTTTGGAGCGA TERM 3058 2627907 - 2627937 + T 100 -18.6 -4.86731 | opp_overlap 2627907 2627902 2627912, overlap 2627902 2627912 TAATTTTAAAGAAAA TAAAAGCGCTGAAT ATG ATTCAGCGCTTTTA TTTTGTTTGGAGCGA TERM 3059 2627932 - 2627912 - T 100 -14.1 -5.34857 | opp_overlap 2627907 2627902 2627912, overlap 2627907 2627902 TTAAAGAAAATAAAA GCGCTGAAT ATG ATTCAGCGC TTTTATTTTGTTTGG TERM 3060 2627912 - 2627932 + T 100 -14.1 -5.34857 | opp_overlap 2627912 2627907 2627902, overlap 2627907 2627902 TTAAAGAAAATAAAA GCGCTGAAT ATG ATTCAGCGC TTTTATTTTGTTTGG TERM 3061 2628436 - 2628410 - T 82 -8.9 -4.04149 | CAATGAGACTATAAA CCATTTTCTCT TCGAG AAAGAAAATGG AGCGACACACGAGGT TERM 3062 2628680 - 2628654 - T 82 -8.9 -4.04149 | CAATGAGACTATAAA CCATTTTCTCT TCGAG AAAGAAAATGG AGCGACACACGAGGT TERM 3063 2629075 - 2629116 + T 100 -11.3 -4.62069 | gap 1, opp_overlap 2629076 2629094 2629095, overlap 2629076 AACTGTGATGATGCA AGCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGCG TTTTTCCGCTCAACA TERM 3064 2629076 - 2629115 + T 100 -14.8 -3.3692 | gap 1, opp_overlap 2629076 2629094 2629095, overlap 2629075 ACTGTGATGATGCAA GCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGC GTTTTTCCGCTCAAC TERM 3065 2629115 - 2629076 - T 95 -14.8 -3.09635 | gap 1, opp_overlap 2629076 2629075, overlap 2629094 2629095 ACTGTGATGATGCAA GCGTATTTTGAAAAAAAAT GCG ATTTTTTTTCAAAAT-CGC GTTTTTCCGCTCAAC TERM 3066 2629116 - 2629094 - T 86 -4.9 -5.76949 | opp_overlap 2629076 2629075, overlap 2629076 2629095 TATTTTGAAAAAAAA TGCGATTTT TTTTC AAAATCGCG TTTTTCCGCTCAACA TERM 3067 2629115 - 2629095 - T 79 -8.4 -4.05085 | opp_overlap 2629076 2629075, overlap 2629076 2629094 ATTTTGAAAAAAAAT GCGATTTT TTTTC AAAATCGC GTTTTTCCGCTCAAC VFMJ11_2451 2629692 - 2629147 - | oligoribonuclease rsgA_1 2629791 - 2630855 + | ribosome small subunit-dependent GTPase A TERM 3068 2631473 - 2631487 + G 70 -5.7 -4.36378 | TACCGAACTTATTTG CACGT AATGA ACGTG TTGTTTGTATTTTTG psd 2630935 - 2631798 + | phosphatidylserine decarboxylase TERM 3069 2631844 - 2631824 - f 100 -12.7 -4.67968 | opp_overlap 2631824 TTAAGAAATAATAAA TAGCGAACA CAT TGTTCGCTA TTTTTTTATCTTTAG TERM 3070 2631824 - 2631844 + F 100 -12.7 -5.88197 | opp_overlap 2631824 TTAAGAAATAATAAA TAGCGAACA CAT TGTTCGCTA TTTTTTTATCTTTAG TERM 3071 2632741 - 2632713 - g 88 -3.8 -5.76633 | opp_overlap 2632713 TTATATACAAAAAAA GCACCGAACC GCTTTGCAT GGCTTGGTGC TTTTTTAGCTGTAAT TERM 3072 2632713 - 2632741 + G 76 -4.5 -5.13473 | opp_overlap 2632713 TTATATACAAAAAAA GCACCGAACCG CTTTGCA TGGCTTGGTGC TTTTTTAGCTGTAAT VFMJ11_2454 2631894 - 2632781 + | transporter, drug/metabolite exporter family VFMJ11_2455 2633774 - 2632818 - | putative lysyl-tRNA synthetase family protein GenX TERM 3073 2635388 - 2635400 + G 73 -7.7 -3.86252 | CTAGGTTCAAACTCT CTAGC TGA GCTAG TTGTATTTGGTCGCC frdA 2634200 - 2636005 + | fumarate reductase, flavoprotein subunit VFMJ11_2457 2636005 - 2636748 + | fumarate reductase iron-sulfur subunit VFMJ11_2458 2636751 - 2637134 + | fumarate reductase subunit C VFMJ11_2459 2637146 - 2637508 + | fumarate reductase subunit D TERM 3074 2637519 - 2637560 + T 95 -14.8 -2.71447 | gap 1, opp_overlap 2637531, overlap 2637524 2637531 TCTAATCATCATCTA GATACTGAAAAAGGTTGGC TTTAT GCCAACCTTTTTT-GTATC TGCTATGTAATAAAT TERM 3075 2637524 - 2637556 + T 85 -12.2 -2.99813 | opp_overlap 2637531, overlap 2637519 2637531 TCATCATCTAGATAC TGAAAAAGGTTGGC TTTAT GCCAACCTTTTTTG TATCTGCTATGTAAT TERM 3076 2637549 - 2637531 - T 100 -10.3 -4.72846 | opp_overlap 2637524 2637519 2637531 CTAGATACTGAAAAA GGTTGGC TTTAT GCCAACC TTTTTTGTATCTGCT TERM 3077 2637531 - 2637549 + T 100 -10.3 -5.43414 | opp_overlap 2637531, overlap 2637524 2637519 CTAGATACTGAAAAA GGTTGGC TTTAT GCCAACC TTTTTTGTATCTGCT TERM 3078 2637764 - 2637749 - T 95 -6.8 -5.88565 | opp_overlap 2637749 GGTATAATAAAAAAA GGCCAC CGAA GTGACC TTTTATATAAAGCTA efp 2638365 - 2637799 - | translation elongation factor P TERM 3079 2637896 - 2637882 - G 70 -8.6 -3.37513 | opp_overlap 2637881 2637876 2637872 2637890 ATAGTGGAACACGAA CTACTG CAC CAGTAG ATAATGTTGCTGGTT VFMJ11_2461 2638398 - 2639420 + | lysine 2,3-aminomutase TERM 3080 2639430 - 2639464 + T 95 -12.5 -3.67864 | gap 1, opp_overlap 2639430 2639438, overlap 2639438 2639455 2639460 GAATAATTACAGACA TA-AAAAAACCGAAGC AATC GCTTCGGTTTTTTGTA TTTAGAATTCAATTC TERM 3081 2639464 - 2639430 - T 87 -12.5 -3.08176 | gap 1, opp_overlap 2639430 2639438 2639455 2639460, overlap 2639438 GAATAATTACAGACA TA-AAAAAACCGAAGC AATC GCTTCGGTTTTTTGTA TTTAGAATTCAATTC TERM 3082 2639438 - 2639455 + T 100 -11.3 -5.56264 | opp_overlap 2639430 2639438, overlap 2639430 ACAGACATAAAAAAA CCGAAGC AATC GCTTCGG TTTTTTGTATTTAGA TERM 3083 2639455 - 2639438 - T 100 -11.3 -5.77988 | opp_overlap 2639438 2639430, overlap 2639430 ACAGACATAAAAAAA CCGAAGC AATC GCTTCGG TTTTTTGTATTTAGA pfkA 2640446 - 2639484 - | 6-phosphofructokinase TERM 3084 2639566 - 2639580 + g 76 -7.2 -4.18018 | TCGATGATATCGTGG TGAACA AGT TGTTCA TTTTGAATACCAACA VFMJ11_2463 2641571 - 2640666 - | ferrous iron efflux protein F TERM 3085 2641049 - 2641031 - G 79 -5.3 -5.01811 | overlap 2641033 2641036 TCACTAAAGCAAAAA TAGCATC GGCTT GATGCCA ACCATACCAGCTCAA TERM 3086 2641673 - 2641708 + r 71 -3.3 -5.08601 | opp_overlap 2641678, overlap 2641678 TATTGGCATAAACAA AAAAACGAGCCCCTA CTTTCA TAAGGACTCGTTTTA TTTTTATTCGACTAA TERM 3087 2641703 - 2641678 - R 100 -8.3 -6.02919 | opp_overlap 2641673 2641678 GCATAAACAAAAAAA CGAGCCCCTAC TTTC ATAAGGACTCG TTTTATTTTTATTCG TERM 3088 2641678 - 2641703 + r 77 -3.2 -5.42605 | opp_overlap 2641678, overlap 2641673 GCATAAACAAAAAAA CGAGCCCCTA CTTTCA TAAGGACTCG TTTTATTTTTATTCG VFMJ11_2464 2642221 - 2641730 - | periplasmic protein CpxP TERM 3089 2641805 - 2641819 + g 75 -2.8 -5.243 | overlap 2641807 AGGCGTTAAAATGTT CATCAT TTC ATGACG TTTTTTCATCATTTC VFMJ11_2465 2642427 - 2643110 + | transcriptional regulatory protein CpxR TERM 3090 2643158 - 2643174 + G 70 -2.9 -5.09225 | TTTATCCAGTTTATA TGGCCGA ATC TTTGCCA TTTTTTGGCTAACCT VFMJ11_2466 2643114 - 2644502 + | sensor protein CpxA VFMJ11_2467 2644623 - 2645102 + | RNA methyltransferase, TrmH family, group 2 TERM 3091 2645136 - 2645155 + T 100 -10.8 -4.99035 | opp_overlap 2645136 CCCTAGATACAAAAA TAGCCACT CTCT AGTGGCTA TTTTTATATACATAA TERM 3092 2645155 - 2645136 - T 100 -10.8 -5.03994 | opp_overlap 2645136 CCCTAGATACAAAAA TAGCCACT CTCT AGTGGCTA TTTTTATATACATAA VFMJ11_2468 2646002 - 2645181 - | serine acetyltransferase 4 VFMJ11_2469 2647043 - 2646021 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 3093 2647207 - 2647238 + r 72 -8 -3.33711 | GCTATTCATTATTAT GCTTCAGAAGGCGC AGCT GCGTTTTCTTGAGC TTGGCTTTGTAGGTA secB 2647673 - 2647203 - | protein-export chaperone SecB TERM 3094 2647739 - 2647704 - R 75 -10 -2.6518 | gap 1, opp_overlap 2647703 2647707, overlap 2647703 2647707 TGTAATATGTAGAAT GAATGCAGAATAACGAT GTC ACC-TTACTCTGCATTC GTGATATCTAAAAAA VFMJ11_2471 2648298 - 2647804 - | sulfurtransferase VFMJ11_2472 2648551 - 2649609 + | cell wall endopeptidase, family M23/M37 TERM 3095 2649654 - 2649627 - T 100 -14.3 -4.946 | opp_overlap 2649627 ATGAAATACTAAAAA GCCGCATTATG TTCATT CATAATGCGGC TTTTTTATTTAATTC TERM 3096 2649627 - 2649654 + T 100 -14.3 -5.72053 | opp_overlap 2649627 ATGAAATACTAAAAA GCCGCATTATG TTCATT CATAATGCGGC TTTTTTATTTAATTC VFMJ11_2473 2650124 - 2649675 - | FxsA protein aspA 2650641 - 2652092 + | aspartate ammonia-lyase TERM 3097 2652128 - 2652109 - f 79 -9.2 -3.41222 | opp_overlap 2652109, overlap 2652107 TCTTAACGGTAAATA GCGAGCTC TCAG GGGCTCGC TTTTTTTATTTGTAA TERM 3098 2652109 - 2652128 + F 100 -11.4 -6.02919 | opp_overlap 2652109 2652107 TCTTAACGGTAAATA GCGAGCTC TCAG GGGCTCGC TTTTTTTATTTGTAA TERM 3099 2652508 - 2652495 - g 71 -3.9 -4.9218 | GATCTAGCAGAAAAA TTCTT ACGT AAGAA TCCAAAACGCATTAC VFMJ11_2475 2652258 - 2653559 + | anaerobic C4-dicarboxylate transporter DcuA TERM 3100 2653608 - 2653588 - T 90 -11.2 -3.57883 | opp_overlap 2653588 ATAATATCCCTCAAA TGGCAGCT GAATA AGCTGCCA TTTTTTTATGTCTTT TERM 3101 2653588 - 2653608 + T 100 -11.2 -5.82281 | opp_overlap 2653588 ATAATATCCCTCAAA TGGCAGCT GAATA AGCTGCCA TTTTTTTATGTCTTT VFMJ11_2476 2654047 - 2653622 - | universal stress protein A TERM 3102 2654548 - 2654561 + G 83 -5.3 -5.20216 | opp_overlap 2654538 2654545 TGGAAGATGGAACCC CTCAT AATG ATGAG TTTTTTGGTGATGTG TERM 3103 2654861 - 2654836 - g 74 -4.7 -4.93696 | CTGAAACACCAAAAA CGCAAACTC AACAACAA GAGTTAGCG ACCAATTTAGGTGAT TERM 3104 2655769 - 2655754 - g 78 -2.6 -5.42259 | TGACCTTTAAAAAAA TCACTA ATAT TAATGA GTTAAACCAAGAACT TERM 3105 2655962 - 2655941 - g 89 -5.9 -5.49234 | AGACGTAACAAAAAA TAGCCCAAC AGAT ATTGAGCTA TTACAGCAGCTTAAA VFMJ11_2477 2654262 - 2656109 + | thiol:disulfide interchange protein DsbD nagB 2656218 - 2657018 + | glucosamine-6-phosphate isomerase TERM 3106 2657084 - 2657044 - T 100 -11.4 -4.1673 | opp_overlap 2657056, overlap 2657049 2657056 TAATTTCGCAATAAA TTAAACAAAAAACCACCG TTTAT CGGTGGTTTTTTTTGTAA TAAAAAAAAGCTAAA TERM 3107 2657079 - 2657049 - T 100 -11.3 -4.21141 | opp_overlap 2657056, overlap 2657044 2657056 TCGCAATAAATTAAA CAAAAAACCACCG TTTAT CGGTGGTTTTTTT TGTAATAAAAAAAAG TERM 3108 2657072 - 2657056 - T 100 -9.4 -5.74086 | opp_overlap 2657056, overlap 2657049 2657044 AAATTAAACAAAAAA CCACCG TTTAT CGGTGG TTTTTTTTGTAATAA TERM 3109 2657056 - 2657072 + T 100 -9.4 -5.9873 | opp_overlap 2657056 2657049 2657044 AAATTAAACAAAAAA CCACCG TTTAT CGGTGG TTTTTTTTGTAATAA VFMJ11_2479 2658334 - 2657129 - | transporter, MFS superfamily TERM 3110 2658388 - 2658359 - R 95 -8.7 -5.27335 | gap 1, opp_overlap 2658359 CTGTTTAAATAAAAA GATCTCAGA-AGCA TAT CGCTTTCTGAGACC TTATCTAAAACACAT VFMJ11_2480 2658900 - 2658403 - | hypothetical protein gap_2 2659936 - 2658935 - | glyceraldehyde-3-phosphate dehydrogenase, type I VFMJ11_2482 2660282 - 2659953 - | transcriptional regulator, ArsR family VFMJ11_2483 2660413 - 2661321 + | transcriptional regulator TERM 3111 2661332 - 2661363 + T 79 -10.2 -2.92668 | opp_overlap 2661332 ATTAGATATAAAAAA GCCTCTGCTCATTA GTAA TAACAAGCAGAGGC TATGATTAAATGGTA TERM 3112 2661363 - 2661332 - T 100 -14.6 -5.43414 | opp_overlap 2661332 ATTAGATATAAAAAA GCCTCTGCTCATTA GTAA TAACAAGCAGAGGC TATGATTAAATGGTA VFMJ11_2484 2662904 - 2661387 - | hypothetical protein TERM 3113 2661482 - 2661501 + g 72 -9.2 -3.33911 | TAAACCACCCTTTGC CTGGGACG GTTT CGACCCAG TTCGCTTCTTTGCCT VFMJ11_2485 2664199 - 2663012 - | glyceraldehyde 3-phosphate dehydrogenase TERM 3114 2664705 - 2664689 - g 72 -9.5 -3.04242 | overlap 2664686 AAGAAGATGAAATCA TTCTGGT TGA ACCAGAA ACACATCATTATTGG VFMJ11_2486 2664598 - 2665824 + | NADH dehydrogenase TERM 3115 2665854 - 2665877 + T 100 -12.5 -5.5112 | opp_overlap 2665854 AGAGATAAATAAAAA CGGCAACCT TATTTT AGGTTGCCG TTTTTTATTGGTAAG TERM 3116 2665877 - 2665854 - T 100 -12.5 -5.4433 | opp_overlap 2665854 AGAGATAAATAAAAA CGGCAACCT TATTTT AGGTTGCCG TTTTTTATTGGTAAG VFMJ11_2487 2666867 - 2665902 - | high-affinity zinc uptake system protein ZnuA TERM 3117 2666121 - 2666135 + g 70 -7.8 -3.6682 | overlap 2666122 ACGAATCTCTGTAAT TCGAGC AGG GCTCGG TTTAGATGCATCAGA TERM 3118 2666952 - 2666923 - H 100 -12.5 -4.09739 | opp_overlap 2666915 2666927 CCAAGGTTGGCAAAA TTAATTGTTATGT TATA ACATAACAATTAA ATAACCATATTGAAA TERM 3119 2666927 - 2666948 + H 71 -8.9 -3.06679 | opp_overlap 2666923, overlap 2666915 GGTTGGCAAAATTAA TTGTTATGT TATA ACATAACAA TTAAATAACCATATT VFMJ11_2488 2667019 - 2667750 + | zinc import ATP-binding protein ZnuC 2 VFMJ11_2489 2667740 - 2668561 + | high-affinity zinc uptake system membrane protein ZnuB VFMJ11_2490 2668694 - 2669716 + | cobalamin synthesis protein P47K TERM 3120 2669788 - 2669762 - T 89 -7.3 -5.37345 | gap 1, overlap 2669763 TCTAAGTATAAAAAA TGGCAGCG-TAC ATAG GTAGCGCTGCCT GTGGGTGGACATTAA TERM 3121 2669787 - 2669763 - T 90 -10.8 -3.81322 | gap 1, overlap 2669762 CTAAGTATAAAAAAT GGCAGCG-TAC ATAG GTAGCGCTGCC TGTGGGTGGACATTA VFMJ11_2491 2670466 - 2669921 - | transcriptional regulator, TetR family TERM 3122 2670641 - 2670626 - H 73 -9 -3.24902 | opp_overlap 2670626 2670625 TAACATGATTATTAA TGGGTC GATT GACCCA ATTTGTATACAATAA TERM 3123 2670626 - 2670641 + H 71 -9 -3.02698 | opp_overlap 2670626, overlap 2670625 TAACATGATTATTAA TGGGTC GATT GACCCA ATTTGTATACAATAA VFMJ11_2492 2670778 - 2671722 + | putative ic quinone-oxidoreductase family protein TERM 3124 2671875 - 2671861 - T 75 -8.6 -3.3579 | opp_overlap 2671873, overlap 2671849 2671859 2671872 2671873 AAAGCCCCCTAAAGA GCCATT AAA AATGGC TGACTCATCAGCCTT TERM 3125 2671889 - 2671872 - T 74 -5.5 -4.76644 | opp_overlap 2671873, overlap 2671861 2671859 2671873 AAGAGCCATTAAAAA TGGCTGA CTCA TCAGCCT TATTTCCGTCGTTCT TERM 3126 2671888 - 2671873 - T 75 -9 -3.44902 | opp_overlap 2671873, overlap 2671861 2671859 2671872 AGAGCCATTAAAAAT GGCTGA CTCA TCAGCC TTATTTCCGTCGTTC TERM 3127 2671873 - 2671888 + T 82 -9 -3.98745 | opp_overlap 2671861 2671859 2671873 2671872 AGAGCCATTAAAAAT GGCTGA CTCA TCAGCC TTATTTCCGTCGTTC glmS 2673892 - 2672060 - | glutamine-fructose-6-phosphate transaminase VFMJ11_2494 2674745 - 2673984 - | glucitol operon repressor TERM 3128 2675421 - 2675411 - g 79 -5.4 -4.88067 | ATTTAGCGACAAAAA TAGC TGC GCTA ACGCCTCAGCAATAT VFMJ11_2495 2674972 - 2675601 + | two-component response regulator VFMJ11_2496 2675726 - 2676349 + | hypothetical protein TERM 3129 2676417 - 2676433 + F 84 -5.8 -5.38054 | opp_overlap 2676417 CCACTTCACATAAAA CGCTCA TATTT TGGGCG TTTTTCTTTATCCGC VFMJ11_2497 2676533 - 2676799 + | membrane protein TERM 3130 2678057 - 2678047 - g 79 -6.8 -4.50627 | GATTTATTAAAGAAA GGCT TTA AGCC TAACATGACCGATAA VFMJ11_2498 2676811 - 2678514 + | sodium/solute symporter family protein TERM 3131 2678568 - 2678545 - T 93 -11 -3.90425 | opp_overlap 2678545 GACTTAAATGAATAA GGGAGTAAGC AAGT GCTAACTCCC TTTTTTTTATTAAGA TERM 3132 2678545 - 2678568 + T 100 -11 -6.09888 | opp_overlap 2678545 GACTTAAATGAATAA GGGAGTAAGC AAGT GCTAACTCCC TTTTTTTTATTAAGA VFMJ11_2499 2682031 - 2678591 - | sensor histidine kinase TERM 3133 2681075 - 2681063 - G 71 -6.2 -4.15222 | opp_overlap 2681063 2681062 AGTCCCTCCAACAAA GGCG AGTAA CGCC ATATTCTCTGCACCA TERM 3134 2682110 - 2682072 - R 86 -4.7 -5.75478 | gap 1, opp_overlap 2682072 2682072 AACGATATAAAAAAA CGCCAGAA-GGTGC ATTTATTCTGTA GCACCATTCTAGCG TTTAATTATTGCTTC VFMJ11_2500 2683294 - 2682152 - | probable 3-phenylpropionic acid transporter TERM 3135 2683049 - 2683034 - G 70 -3.2 -4.90266 | CCCATTAACCAAAAA GAGAGC AAGG GCTATC AAAGAAGCTAAGGTT VFMJ11_2501 2683499 - 2685331 + | cyclic nucleotide binding protein TERM 3136 2685865 - 2685845 - g 72 -8.3 -3.58269 | GAAGCTATCTCCAAA CATTTAGGG CTC CCCCAAACG GAGAGGCATGATGCA VFMJ11_2502 2685335 - 2685976 + | DNA polymerase III subunit epsilon acsA 2686180 - 2688129 + | acetate--CoA ligase TERM 3137 2688182 - 2688206 + F 100 -10.1 -5.21709 | opp_overlap 2688182 2688184 AAATTTTAATTAAAA GTCATCATAGA TTT TCTATGGTGGC TTTTTTGATGTGACG aroQ 2688585 - 2689034 + | 3-dehydroquinate dehydratase, type II accB 2689065 - 2689523 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein accC 2689535 - 2690878 + | acetyl-CoA carboxylase, biotin carboxylase TERM 3138 2690950 - 2690908 - f 93 -10.1 -4.21772 | gap 1, opp_overlap 2690917, overlap 2690902 2690905 2690917 TTCAATAAATAAGAA CGAATTAAAGACGGTGAGTA TGAT TACTCACCGTCTTTTTTT-G TGTTAAAATCGCCCA TERM 3139 2690917 - 2690942 + F 100 -16.3 -5.80817 | opp_overlap 2690908 2690902 2690905 2690917 TAAGAACGAATTAAA GACGGTGAGTA TGAT TACTCACCGTC TTTTTTTGTGTTAAA TERM 3140 2690942 - 2690917 - f 100 -16.3 -4.04141 | opp_overlap 2690917, overlap 2690908 2690902 2690905 TAAGAACGAATTAAA GACGGTGAGTA TGAT TACTCACCGTC TTTTTTTGTGTTAAA prmA 2690995 - 2691879 + | ribosomal protein L11 methyltransferase TERM 3141 2692861 - 2692880 + G 72 -4.3 -4.68593 | overlap 2692862 GCCATGTTCATGCGC TTCACCA ATTTTA TGGTGAG TTTTTAGGTCCTCGC VFMJ11_2508 2692152 - 2693033 + | tRNA-dihydrouridine synthase B VFMJ11_2509 2693056 - 2693352 + | DNA-binding protein fis TERM 3142 2693363 - 2693338 - T 80 -4.7 -5.25805 | overlap 2693341 AAGAAACTTAAAAAA TACGGCATGAA CTAA TCCACGCCTTA TTTGAAAAATTTAAA TERM 3143 2693379 - 2693402 + T 100 -10.4 -5.76633 | opp_overlap 2693379 TTTGAAAAATTTAAA GCAGTGTTAA GCAA TTAACGCTGC TTTTTTTATATCTGC TERM 3144 2693402 - 2693379 - T 79 -8.2 -3.99805 | opp_overlap 2693379 TTTGAAAAATTTAAA GCAGTGTTAA GCAA TTAACGCTGC TTTTTTTATATCTGC TERM 3145 2693484 - 2693527 + T 83 -10 -3.8766 | gap 2, opp_overlap 2693484 2693492, overlap 2693492 TTGGTATAACAAGTA CAA-AAAAACCGATAC-GCA TTTTAC TGCTGTATCGGTTTTTCTTG TTTACTCTACTATGG TERM 3146 2693527 - 2693484 - T 77 -10 -2.98545 | gap 2, opp_overlap 2693484 2693492, overlap 2693492 TTGGTATAACAAGTA CAA-AAAAACCGATAC-GCA TTTTAC TGCTGTATCGGTTTTTCTTG TTTACTCTACTATGG TERM 3147 2693518 - 2693492 - T 93 -7.4 -5.73339 | gap 1, opp_overlap 2693484 2693492, overlap 2693484 ACAAGTACAAAAAAA CCGATAC-GCA TTTTAC TGCTGTATCGG TTTTTCTTGTTTACT TERM 3148 2693492 - 2693518 + T 93 -7.4 -5.39905 | gap 1, opp_overlap 2693492 2693484, overlap 2693484 ACAAGTACAAAAAAA CCGATAC-GCA TTTTAC TGCTGTATCGG TTTTTCTTGTTTACT VFMJ11_2510 2693845 - 2693537 - | hypothetical protein zntR 2694354 - 2693935 - | Zn(II)-responsive transcriptional regulator purH 2694635 - 2696227 + | bifunctional purine biosynthesis protein PurH TERM 3149 2696278 - 2696243 - f 83 -11.2 -2.85874 | gap 1, opp_overlap 2696245, overlap 2696240 2696245 2696266 GAAAGACAGTAACGA GAGCGCTTCGCTTCTAG AAA CTAGAA-CGCTGCGCTC CTATAAGAGCAAAAG purD 2696405 - 2697697 + | phosphoribosylamine--glycine ligase TERM 3150 2697744 - 2697714 - T 83 -6.9 -4.83243 | opp_overlap 2697721, overlap 2697721 TTTACAGAAAATAAA TAATAAAGGCGCT GTAAT AGCGCCTTTTTTC GTTCGACTTGATTAA TERM 3151 2697721 - 2697737 + T 100 -10.1 -5.27477 | opp_overlap 2697714 2697721 AAAATAAATAATAAA GGCGCTG TAA TAGCGCC TTTTTTCGTTCGACT TERM 3152 2697737 - 2697721 - T 100 -9.4 -4.73617 | opp_overlap 2697721, overlap 2697714 AAAATAAATAATAAA GGCGCT GTAAT AGCGCC TTTTTTCGTTCGACT VFMJ11_2514 2698466 - 2697762 - | fkbp-type peptidyl-prolyl cis-trans isomerase TERM 3153 2698496 - 2698472 - R 100 -15.9 -4.82901 | opp_overlap 2698467 TGCGCTTCATAAAAA TGCCGAGTTAA GGA TTAACTCGGCA AAGTATAGCTTAGTT VFMJ11_2515 2698778 - 2698506 - | DNA-binding protein HU-beta TERM 3154 2699366 - 2699328 - g 87 -8.3 -4.58685 | gap 1, overlap 2699316 2699331 AAATTGTTCCAAAAA CAATCGGAGCAACTT-AC TGGC GTCAACTTGCTCCGATGG CAGCGACAATGCTTC TERM 3155 2699363 - 2699331 - g 85 -8.6 -4.40561 | gap 1, overlap 2699328 TTGTTCCAAAAACAA TCGGAGCAACTT-AC TGGC GTCAACTTGCTCCGA TGGCAGCGACAATGC VFMJ11_2516 2699000 - 2700070 + | CBS-domain containing protein TERM 3156 2700109 - 2700126 + T 100 -9.9 -5.8187 | opp_overlap 2700109 TTGCAAACAAAAAAA CCGATGA GTAA TCATCGG TTTTTTTATTAAATC TERM 3157 2700126 - 2700109 - T 100 -9.9 -5.95539 | opp_overlap 2700109 TTGCAAACAAAAAAA CCGATGA GTAA TCATCGG TTTTTTTATTAAATC VFMJ11_2517 2700741 - 2700148 - | D-fructose-6-phosphate amidotransferase TERM 3158 2700859 - 2700846 - g 79 -3.1 -5.46706 | overlap 2700855 ATTTCAAAAGAAAAA GAGAA ATAC CTCTC ACTTTTAGAGCAAGC TERM 3159 2701454 - 2701436 - g 74 -3.8 -5.12707 | opp_overlap 2701437 2701437 2701438, overlap 2701437 2701438 TCAAACCTTAAAAAA CTGCAATG GTG CATTGCTA TTTAATGTCGGACGA TERM 3160 2701438 - 2701452 + G 72 -8.6 -3.5032 | opp_overlap 2701437 2701436 2701438, overlap 2701437 2701437 AAACCTTAAAAAACT GCAATG GTG CATTGC TATTTAATGTCGGAC VFMJ11_2518 2700813 - 2701727 + | aspartate-semialdehyde dehydrogenase VFMJ11_2519 2702225 - 2701773 - | protein YhgI TERM 3161 2701978 - 2701990 + g 70 -2.7 -5.10497 | opp_overlap 2701969 AACTCATACAAAGAT GTAGA CGC TTTAC TTTTTTGCATCGCTT TERM 3162 2702312 - 2702293 - R 93 -7.2 -5.4505 | gap 1, opp_overlap 2702293 TGTTCCAATAAAAAA GGAGACCTC ATT GAG-TCTCC TTTTTATCTAGAATC TERM 3163 2702293 - 2702312 + r 88 -7.2 -4.9792 | gap 1, opp_overlap 2702293 TGTTCCAATAAAAAA GGAGACCTC ATT GAG-TCTCC TTTTTATCTAGAATC TERM 3164 2702321 - 2702343 + r 73 -7.2 -3.96892 | opp_overlap 2702326, overlap 2702326 AGTCTCCTTTTTATC TAGAATCTTA ATT TAAGATTTTA TTTATGATACGGCTT TERM 3165 2702326 - 2702338 + r 77 -4.9 -5.02323 | opp_overlap 2702326, overlap 2702321 CCTTTTTATCTAGAA TCTTA ATT TAAGA TTTTATTTATGATAC hemE 2703408 - 2702341 - | uroporphyrinogen decarboxylase TERM 3166 2702873 - 2702900 + g 88 -4.2 -5.79588 | gap 1, opp_overlap 2702877, overlap 2702878 TTATCTAATAACAAG TGAAGTGTTGCAG GCT CTGCA-TACATCA TTTTTTTGATTTTAG TERM 3167 2703618 - 2703639 + r 91 -4.3 -5.84381 | ACAACACCTTACTTA CACCCATTC ATCT GTTTGGGTG TTTTTTTCTTGCTGA VFMJ11_2521 2704409 - 2703615 - | NADH pyrophosphatase VFMJ11_2522 2704569 - 2705051 + | transcriptional regulator TERM 3168 2705055 - 2705090 + T 100 -18 -4.44974 | opp_overlap 2705055 2705060 CCAGGAGCTTAATGA TTAAATAGAGTGTTTG AACC CAAACACTCTATTTAA TTTTATAAAATTTGA TERM 3169 2705090 - 2705055 - T 100 -18 -2.74012 | opp_overlap 2705055, overlap 2705060 CCAGGAGCTTAATGA TTAAATAGAGTGTTTG AACC CAAACACTCTATTTAA TTTTATAAAATTTGA TERM 3170 2705085 - 2705060 - T 100 -13.5 -3.84514 | opp_overlap 2705055, overlap 2705055 AGCTTAATGATTAAA TAGAGTGTTTG AACC CAAACACTCTA TTTAATTTTATAAAA VFMJ11_2523 2705929 - 2705093 - | curli production assembly/transport component CsgG VFMJ11_2524 2706328 - 2705951 - | curli production assembly/transport component CsgF VFMJ11_2525 2706814 - 2706362 - | hypothetical protein TERM 3171 2706652 - 2706636 - G 85 -2.9 -5.77734 | overlap 2706637 AAAGAAAAATAAAAA TCTCGTC CCA AACGAGT CAATGTACGATCAAT VFMJ11_2526 2707455 - 2706811 - | regulatory protein CsgD VFMJ11_2527 2707711 - 2708280 + | minor curlin subunit CsgB VFMJ11_2528 2708305 - 2709249 + | hypothetical protein TERM 3172 2709267 - 2709296 + T 100 -13.7 -3.93262 | opp_overlap 2709272, overlap 2709272 TTATCACTTAAATAA AAAAAGCCCTGCA TCTC TGCAGGGCTTTTA TTTGCGTTTATTAAA TERM 3173 2709272 - 2709291 + T 100 -13.6 -4.96468 | opp_overlap 2709272, overlap 2709267 ACTTAAATAAAAAAA GCCCTGCA TCTC TGCAGGGC TTTTATTTGCGTTTA TERM 3174 2709291 - 2709272 - T 100 -13.6 -5.96894 | opp_overlap 2709272 2709267 ACTTAAATAAAAAAA GCCCTGCA TCTC TGCAGGGC TTTTATTTGCGTTTA rpoC 2713521 - 2709316 - | DNA-directed RNA polymerase, beta' subunit TERM 3175 2709377 - 2709402 + g 74 -4 -5.0925 | gap 1 TCAGTCGCTTGCTCA GCTGATGGACC TTCTT GCTCCA-CAGC TTTTTGCTTTTGACG TERM 3176 2709635 - 2709655 + g 79 -9.7 -3.63895 | CGTGCAGGTTGCTTG CCTTCAGCT TCA AGCTGACGG TTTGCAATCGTTACG TERM 3177 2713563 - 2713547 - R 100 -13.7 -5.37345 | opp_overlap 2713547 TGTAAGGAGAAAAAA GGCGCTC GGC GAGCGCC TTATATTCTACCGGA TERM 3178 2713547 - 2713563 + r 100 -13.7 -3.7511 | opp_overlap 2713547 TGTAAGGAGAAAAAA GGCGCTC GGC GAGCGCC TTATATTCTACCGGA rpoB 2717621 - 2713593 - | DNA-directed RNA polymerase, beta subunit TERM 3179 2715223 - 2715213 - G 71 -6.8 -3.97636 | opp_overlap 2715213 2715211 ATTCCAAGGCATAAA TGCG ATA CGCA TGTTCTGACCAAGTG TERM 3180 2717714 - 2717737 + r 79 -5.3 -5.15634 | opp_overlap 2717716 CTGTTTTCTGTAGGA CATGTTCAC TGATTT GTGATCATG TTTTTTGCTCGGATG TERM 3181 2717826 - 2717801 - R 100 -15.5 -4.64766 | CCTACAGCGCAAAAA GGCCGGTGGTT AATA AACCACCAGCC ATTAGCCGTTAGGCT rplL 2718227 - 2717859 - | ribosomal protein L7/L12 VFMJ11_2532 2718777 - 2718283 - | ribosomal protein L10 TERM 3182 2718740 - 2718750 + g 89 -5.4 -5.47159 | GCTTCGTTGACTTCA GCAA CAA TTGC TTTTTTGTCTTGAAG TERM 3183 2718872 - 2718854 - R 71 -5.4 -4.55287 | opp_overlap 2718854 2718855, overlap 2718855 TGCATTCACAGAAAA CCAATTTT TAT AAAATTGA TTTCAAGTTCGGGCA rplA 2719727 - 2719023 - | ribosomal protein L1 rplK 2720160 - 2719732 - | ribosomal protein L11 TERM 3184 2720118 - 2720130 + g 73 -7.7 -3.84712 | overlap 2720125 GGTTCGCCATACCTG CTGCA ACT TGCAG TTTGATATAAGCTTC TERM 3185 2720251 - 2720223 - R 100 -11.2 -5.06414 | gap 1, opp_overlap 2720223 CCCCGTTAACAAAAA GGCGCGAAATTAT AGTA ATAATT-CGCGCC TTTGACAATACCTTT TERM 3186 2720223 - 2720251 + r 90 -11.2 -3.58536 | gap 1, opp_overlap 2720223 CCCCGTTAACAAAAA GGCGCGAAATTAT AGTA ATAATT-CGCGCC TTTGACAATACCTTT TERM 3187 2720269 - 2720284 + r 84 -4 -5.71983 | TGACAATACCTTTTG CTGATT TTTC GATCAG TTTTTTTCTACTTGG nusG 2720826 - 2720281 - | transcription termination/antitermination factor NusG VFMJ11_2536 2721216 - 2720839 - | preprotein translocase subunit SecE TERM 3188 2721414 - 2721385 - R 86 -12.3 -2.68114 | opp_overlap 2721391, overlap 2721391 ACACAATACAACGCA GAAAAAGGGCATC AAAT GATGCCCTTTTTA CTAGTACTTAGTCAA TERM 3189 2721408 - 2721391 - R 100 -11.3 -4.93318 | opp_overlap 2721391, overlap 2721385 TACAACGCAGAAAAA GGGCATC AAAT GATGCCC TTTTTACTAGTACTT TERM 3190 2721391 - 2721408 + r 100 -11.3 -4.7871 | opp_overlap 2721391 2721385 TACAACGCAGAAAAA GGGCATC AAAT GATGCCC TTTTTACTAGTACTT tuf_1 2722617 - 2721433 - | translation elongation factor Tu VFMJ11_2542 2723276 - 2723142 - | hypothetical protein coaA 2723301 - 2724224 + | pantothenate kinase VFMJ11_2544 2725184 - 2724225 - | biotin-(acetyl-CoA-carboxylase) ligase murB 2726217 - 2725168 - | UDP-N-acetylenolpyruvoylglucosamine reductase VFMJ11_2546 2726289 - 2726720 + | acetyltransferase, gnat family VFMJ11_2547 2726793 - 2728145 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 3191 2728154 - 2728182 + F 89 -9 -4.49756 | TCTATAATTAATTTC TGGGTATGTATT AATAC AGTGCATACCCA TTTTAATATTTAAAC TERM 3192 2728335 - 2728356 + F 95 -13.1 -3.65522 | opp_overlap 2728335 TACAAACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTCTTCAAATAAGTG TERM 3193 2728356 - 2728335 - f 100 -13.1 -5.24449 | opp_overlap 2728335 TACAAACGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTCTTCAAATAAGTG TERM 3194 2728736 - 2728697 - f 100 -14.6 -3.85698 | opp_overlap 2728706, overlap 2728706 TCCTGTTTCTACAAA TGTAAAAAAGCCCTAATC TTTC GATTAGGGCTTTTTCAAA TAAGTGGCGGAGTGG TERM 3195 2728706 - 2728727 + F 100 -13.1 -4.62783 | opp_overlap 2728706 2728697 TACAAATGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 3196 2728727 - 2728706 - f 100 -13.1 -5.24449 | opp_overlap 2728706, overlap 2728697 TACAAATGTAAAAAA GCCCTAATC TTTC GATTAGGGC TTTTTCAAATAAGTG TERM 3197 2730710 - 2730726 + F 85 -9.4 -4.08546 | overlap 2730702 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3198 2731503 - 2731515 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3199 2732031 - 2732050 + F 73 -8.6 -3.23708 | overlap 2732034 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3200 2732257 - 2732219 - f 71 -7.6 -3.53091 | ATGTTTCTTTCGAAA CCATTTTTAAAGACTCTC AAG GAGAATACTTAAAGATGG TGGGCGATACCGGGC TERM 3201 2732627 - 2732647 + F 80 -9.1 -3.63326 | GGGACACTGGATATT TGAAGATGT TGG GCATCTTCA TTGCTTCTTTACGTT TERM 3202 2732727 - 2732746 + F 72 -9.2 -2.65808 | opp_overlap 2732718, overlap 2732724 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3203 2735865 - 2735881 + F 85 -9.4 -4.08546 | overlap 2735857 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3204 2736658 - 2736670 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3205 2737186 - 2737205 + F 73 -8.6 -3.23708 | overlap 2737189 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3206 2737392 - 2737381 - f 70 -4.4 -4.72029 | opp_overlap 2737381, overlap 2737391 TTCAACCTAATAAAA GGTT TCGA AACC ATTTTTAAAGACTCT TERM 3207 2737586 - 2737605 + F 72 -9.2 -2.65808 | opp_overlap 2737577, overlap 2737583 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT VFMJ11_2556 2739661 - 2740143 + | RNA-binding protein murI 2740891 - 2740106 - | glutamate racemase TERM 3208 2740137 - 2740153 + g 70 -8.1 -3.75193 | opp_overlap 2740137 2740135 2740128, overlap 2740140 CCCAAACACTGAAGA GAACTAA AAT TTAGTTC TTTGAATGTATGATT VFMJ11_2558 2741628 - 2740957 - | conserved domain protein, putative TERM 3209 2741664 - 2741649 - R 88 -7.5 -5.0925 | opp_overlap 2741649 CCTCAAAATGAAAAA CCGCC AATGAA GGCGG TCTTAAATCAAATTA VFMJ11_2559 2743524 - 2741677 - | vitamin B12 receptor TERM 3210 2743500 - 2743514 + g 87 -3.5 -5.72207 | opp_overlap 2743488 2743485 GCAGCGACACTACAG CTGTC GCTAA GGCAG TTTTTTTCATTTCCG TERM 3211 2744014 - 2743998 - g 74 -4.4 -4.84274 | opp_overlap 2743998 CAATTAGATGAAAAA GCAGAA GCACT CTCTGC TATGTTTTCTGAATT trmA 2743944 - 2745050 + | tRNA (uracil-5-)-methyltransferase TERM 3212 2745087 - 2745063 - T 100 -10 -5.89947 | opp_overlap 2745063 TAAACTTAAAAAAAA GGCTCAGAGC GTAAT GTTCTGAGCC TTTTTTATGAACGGT TERM 3213 2745063 - 2745087 + T 100 -12.9 -5.24531 | opp_overlap 2745063 TAAACTTAAAAAAAA GGCTCAGAGCG TAA TGTTCTGAGCC TTTTTTATGAACGGT VFMJ11_2561 2745480 - 2745106 - | acetyl-coenzyme A synthetase TERM 3214 2745471 - 2745481 + g 75 -5.4 -4.68593 | CATTTCTACTATTTT CATG TGT CATG TTTTTACCTCATACA VFMJ11_2562 2746208 - 2745531 - | transcriptional repressor of FabB TERM 3215 2745603 - 2745593 - G 75 -5.4 -4.74103 | TTCGTAATTGAAAAA TGAG TCG CTCA GATAATTCAGTTCGT TERM 3216 2747018 - 2747037 + G 71 -5 -4.59853 | overlap 2747020 CGGTGCAGGTGTCAT TGGAAGTG AATA CGCTTCTA TTTTTAGAGGATTAG VFMJ11_2563 2746443 - 2747858 + | soluble pyridine nucleotide transhydrogenase (STH)(NAD(P)(+) transhydrogenase [B-specific]) TERM 3217 2747887 - 2747869 - T 100 -14.6 -5.37345 | opp_overlap 2747869 TCTAATTACAAAAAA GGGCTGCA TAC TGCAGCCC TTTTTTGTATAGCGA TERM 3218 2747869 - 2747887 + T 100 -14.6 -5.36441 | opp_overlap 2747869 TCTAATTACAAAAAA GGGCTGCA TAC TGCAGCCC TTTTTTGTATAGCGA VFMJ11_2564 2749256 - 2747925 - | DNA-damage-inducible protein F VFMJ11_2565 2750177 - 2749383 - | O-Methyltransferase involved in polyketide biosynthesis lexA 2750929 - 2750303 - | LexA repressor TERM 3219 2750433 - 2750443 + g 73 -6.8 -4.19953 | opp_overlap 2750422 ACCATAGAACCTTTA CGCT CTA AGCG TTTTACCGTTACATC TERM 3220 2753119 - 2753083 - g 73 -6.8 -4.16016 | opp_overlap 2753093 TTACCGTTGAACAAA TTCAGGAACAGATAAA ATTAA TTTATCCTTTCCTAAA AGCGGAGTTGTTCTT VFMJ11_2567 2751171 - 2753594 + | glycerol-3-phosphate acyltransferase TERM 3221 2753659 - 2753618 - T 86 -12.6 -2.70932 | opp_overlap 2753621 2753626 2753658, overlap 2753626 CCCTTTCTTTAAGTA CAAAAAAAGCCAGTATGA TATTAG TCATACTGGCTTTTCTTT TAAAACAACATTTTA TERM 3222 2753621 - 2753656 + T 100 -12.8 -4.08064 | opp_overlap 2753618 2753626, overlap 2753626 TTTCTTTAAGTACAA AAAAAGCCAGTATGAT ATTA GTCATACTGGCTTTTC TTTTAAAACAACATT TERM 3223 2753651 - 2753626 - T 100 -12 -5.71983 | opp_overlap 2753621 2753626, overlap 2753618 TTAAGTACAAAAAAA GCCAGTATGA TATTAG TCATACTGGC TTTTCTTTTAAAACA TERM 3224 2753626 - 2753651 + T 100 -12.7 -5.07652 | opp_overlap 2753626 2753618, overlap 2753621 TTAAGTACAAAAAAA GCCAGTATGAT ATTA GTCATACTGGC TTTTCTTTTAAAACA ubiA 2754692 - 2753829 - | 4-hydroxybenzoate polyprenyl transferase TERM 3225 2753881 - 2753870 - G 73 -2.2 -5.19251 | TAATAGCAATAAAAA TCAG CCCA CCGA CATAGTTATTATTTA TERM 3226 2754615 - 2754601 - G 79 -5.6 -4.85782 | GCGGCTAAAAATAAA GCCCAC AAT GTTGGC CATAAAAGTAATAGA VFMJ11_2569 2755231 - 2754689 - | putative chorismate--pyruvate lyase fliL_2 2755353 - 2755763 + | flagellar basal body-associated protein FliL TERM 3227 2755808 - 2755834 + T 100 -18.2 -5.47821 | opp_overlap 2755808 TGTGTCGATATAGAA TGAGCGAGGTAA TCA TTACCTCGCTCA TTTTTTTAACTCAAT TERM 3228 2755834 - 2755808 - T 100 -18.2 -3.58726 | opp_overlap 2755808 TGTGTCGATATAGAA TGAGCGAGGTAA TCA TTACCTCGCTCA TTTTTTTAACTCAAT VFMJ11_2571 2756682 - 2755840 - | integral membrane protein VFMJ11_2572 2757012 - 2756689 - | thiosulfate sulfurtransferase GlpE TERM 3229 2757442 - 2757485 + r 73 -6.9 -4.06611 | opp_overlap 2757452, overlap 2757452 TCTATTACATTTAGG TATAAAAAAAGGCTGAACT CTTTCA AGTTCAGCCTTCTTTAAAA TTCTTATTGTAATTA TERM 3230 2757452 - 2757475 + r 93 -11.1 -3.98291 | opp_overlap 2757452, overlap 2757442 TTAGGTATAAAAAAA GGCTGAACT CTTTCA AGTTCAGCC TTCTTTAAAATTCTT TERM 3231 2757475 - 2757452 - R 100 -11.8 -5.64274 | opp_overlap 2757452 2757442 TTAGGTATAAAAAAA GGCTGAACTC TTTC AAGTTCAGCC TTCTTTAAAATTCTT rpoH 2758358 - 2757498 - | alternative sigma factor RpoH TERM 3232 2758539 - 2758515 - R 100 -13 -6.01725 | opp_overlap 2758510 AACAAAAACAAAAAA GCCGCTAATT CAATC AATTAGCGGC TTAAGATCTTATTTA VFMJ11_2574 2759527 - 2758574 - | cell division protein FtsX ftsE 2760188 - 2759520 - | cell division ATP-binding protein FtsE VFMJ11_2576 2761430 - 2760192 - | cell division protein FtsY rsmD 2761501 - 2762103 + | RNA methyltransferase, RsmD family VFMJ11_2578 2762104 - 2762370 + | hypothetical protein TERM 3233 2762415 - 2762401 - f 75 -7.1 -4.16279 | opp_overlap 2762401 TAGATTATTTTAAAA GGAGC GCTCA GCTCC TTTTTTTATACTAAG TERM 3234 2762401 - 2762415 + F 93 -7.1 -5.67063 | opp_overlap 2762401 TAGATTATTTTAAAA GGAGC GCTCA GCTCC TTTTTTTATACTAAG VFMJ11_2579 2762515 - 2763108 + | multiple antibiotic resistance protein MarC TERM 3235 2763129 - 2763157 + T 100 -14.8 -3.55071 | opp_overlap 2763129 2763135, overlap 2763135 ACCATCACTTTCAAA TAAAAAGGTCGC TATAT GCGACCTTTTTA TTTACACCAATATAA TERM 3236 2763157 - 2763129 - T 100 -14.8 -3.58522 | opp_overlap 2763129 2763135, overlap 2763135 ACCATCACTTTCAAA TAAAAAGGTCGC TATAT GCGACCTTTTTA TTTACACCAATATAA TERM 3237 2763135 - 2763151 + T 100 -9.4 -5.27335 | opp_overlap 2763129 2763135, overlap 2763129 ACTTTCAAATAAAAA GGTCGC TATAT GCGACC TTTTTATTTACACCA TERM 3238 2763151 - 2763135 - T 100 -9.4 -5.27938 | opp_overlap 2763135 2763129, overlap 2763129 ACTTTCAAATAAAAA GGTCGC TATAT GCGACC TTTTTATTTACACCA VFMJ11_2580 2763415 - 2763173 - | hypothetical protein TERM 3239 2764229 - 2764182 - R 100 -13 -3.98913 | opp_overlap 2764197, overlap 2764183 2764197 TCTACATTCAAATAA GTTCATATAAAAAAACGGACGC ATTT GCGTCCGTTTTTTTATATCTAA AATATAGCACTTAAA TERM 3240 2764228 - 2764183 - R 100 -16.5 -2.98866 | opp_overlap 2764197, overlap 2764182 2764197 CTACATTCAAATAAG TTCATATAAAAAAACGGACGC ATTT GCGTCCGTTTTTTTATATCTA AAATATAGCACTTAA TERM 3241 2764197 - 2764214 + r 100 -12.7 -5.76633 | opp_overlap 2764183 2764182 2764197 GTTCATATAAAAAAA CGGACGC ATTT GCGTCCG TTTTTTTATATCTAA TERM 3242 2764214 - 2764197 - R 100 -12.7 -5.71712 | opp_overlap 2764197, overlap 2764183 2764182 GTTCATATAAAAAAA CGGACGC ATTT GCGTCCG TTTTTTTATATCTAA VFMJ11_2581 2764605 - 2764240 - | hypothetical protein VFMJ11_2582 2764904 - 2765236 + | hypothetical protein TERM 3243 2766520 - 2766508 - g 79 -3.4 -5.51165 | AAAAGGCCAAAAAAA TGGA GCCTA TCCA CATCAATTAATCATG recG 2765258 - 2767339 + | ATP-dependent DNA helicase RecG TERM 3244 2767405 - 2767361 - T 75 -8.9 -3.51934 | gap 1, opp_overlap 2767370 2767375, overlap 2767375 CCCTTCTCATAAATA GCAGATACAAAAAAGGTGAG TAACTG CTCACCTTTTCTTTAT-TGC GATTAAACTTACAAT TERM 3245 2767370 - 2767397 + T 78 -7.8 -4.20918 | opp_overlap 2767361 2767375, overlap 2767375 TAAATAGCAGATACA AAAAAGGTGAGT AACT GCTCACCTTTTC TTTATTGCGATTAAA TERM 3246 2767392 - 2767375 - T 93 -7 -5.43414 | opp_overlap 2767370 2767375, overlap 2767361 AGCAGATACAAAAAA GGTGAG TAACTG CTCACC TTTTCTTTATTGCGA TERM 3247 2767375 - 2767392 + T 88 -7.7 -5.09762 | opp_overlap 2767375 2767361, overlap 2767370 AGCAGATACAAAAAA GGTGAGT AACT GCTCACC TTTTCTTTATTGCGA yhgI 2768004 - 2767420 - | IscR-regulated protein YhgI TERM 3248 2767935 - 2767956 + g 71 -6.6 -4.10161 | CACGGATGTTTGTCC CTTCTGGC TGCTGT GCTAGAAG TTTTGCAAAATGCTC cysQ 2768941 - 2768123 - | 3'(2'),5'-bisphosphate nucleotidase VFMJ11_2586 2769498 - 2768947 - | ADP compounds hydrolase NudE gspN 2770270 - 2769509 - | bacterial type II secretion system protein N VFMJ11_2588 2770758 - 2770267 - | general secretion pathway protein M (Cholera toxin secretion protein epsM) TERM 3249 2770420 - 2770406 - G 81 -7.2 -4.63107 | ACCAAAGAATTAAAA GGTAAA GGT TTTACC CACACTTGCATTTGT gspL 2771987 - 2770758 - | general secretion pathway protein L gspK 2773014 - 2771980 - | general secretion pathway protein K TERM 3250 2772643 - 2772605 - G 71 -9.7 -2.78992 | opp_overlap 2772605, overlap 2772604 ACTGATTCTAATAAG TTCATCCATACACCC ACCAAAAAA GGGCGTTTGGATGAA TCATTACTGGCTTCA gspJ 2773694 - 2773014 - | general secretion pathway protein J TERM 3251 2773520 - 2773510 - G 76 -6.8 -4.43037 | opp_overlap 2773509 2773510 TCAAGAAAAACCAAA CTGC GTT GCAG CTGTTTAATACGCTC gspI 2774058 - 2773681 - | general secretion pathway protein I gspH 2774647 - 2774048 - | general secretion pathway protein H TERM 3252 2774278 - 2774268 - G 79 -6.8 -4.49556 | overlap 2774252 2774251 TCTTCATCAAATAAA GAGC CCG GCTC AAATAGTCGCTCATC gspG 2775119 - 2774667 - | general secretion pathway protein G TERM 3253 2775190 - 2775164 - R 76 -3.7 -5.26907 | overlap 2775168 TAAGATAAAAGAAAA GGTAGATAGCA GTGAA TGCTACCCAAC CAAATTGTTTAATTC gspF 2776396 - 2775182 - | general secretion pathway protein F TERM 3254 2776325 - 2776348 + g 89 -4.6 -5.56264 | overlap 2776308 CTGGCGAACTTGGCG GGCGTTAT CTCCCTCC ATGACGCC TTTTTTCTGTTTCCC gspE 2777896 - 2776397 - | general secretory pathway protein E gspD 2779932 - 2777896 - | general secretion pathway protein D TERM 3255 2778115 - 2778133 + g 78 -3.9 -5.18726 | ACGAATAATGGTTGG CTTAATG AATAC CATTAGG TTTTTCTTCTCAACC TERM 3256 2779021 - 2779037 + g 75 -2.9 -5.26875 | AATCATCACATCATT GCGGTTT TGT GAGCTGC TTTTTTGCTTAGAGC gspC 2780861 - 2779965 - | general secretion pathway protein C TERM 3257 2780957 - 2780973 + H 72 -5.1 -4.72631 | opp_overlap 2780946 2780951 2780948, overlap 2780951 2780959 AGAACAGCACAGCTT TGCTGTC ATT GACGGTA TTTTCTTAAATTACT VFMJ11_2599 2781153 - 2781554 + | heat shock protein 15 TERM 3258 2782310 - 2782295 - g 71 -6.2 -4.29327 | TATAACCAAGATAAA GTTCAA CTGT TTGAAC CTCAAGACGTTGAGT hslO 2781647 - 2782522 + | chaperonin HslO TERM 3259 2782560 - 2782577 + F 100 -9.1 -5.64274 | opp_overlap 2782560 AAAACTGTTACAAAA GCCAGCC GTTA GGTTGGC TTTTTTTATAACTAA TERM 3260 2782577 - 2782560 - f 78 -6.9 -4.41844 | opp_overlap 2782560 AAAACTGTTACAAAA GCCAGCC GTTA GGTTGGC TTTTTTTATAACTAA TERM 3261 2784488 - 2784452 - g 70 -5.8 -4.47217 | AACGAGGAAGGAAAA GCGTTAGTTAAAGCGG GTCCT CAGCTATAACCTACGC CTGATTACTAATAAA pckA 2782859 - 2784481 + | phosphoenolpyruvate carboxykinase (ATP) TERM 3262 2784538 - 2784506 - f 84 -6.3 -5.15167 | opp_overlap 2784510, overlap 2784510 GATTACTAATAAAAA CCAAGCCCTTCTC TCCTTAT GAGAAGGGCTTTT TTATACCCTTAGCTC TERM 3263 2784510 - 2784534 + F 100 -11.5 -5.27923 | opp_overlap 2784506 2784510 ACTAATAAAAACCAA GCCCTTCTC TCCTTAT GAGAAGGGC TTTTTTATACCCTTA TERM 3264 2784534 - 2784510 - f 93 -11.5 -3.94974 | opp_overlap 2784510, overlap 2784506 ACTAATAAAAACCAA GCCCTTCTC TCCTTAT GAGAAGGGC TTTTTTATACCCTTA TERM 3265 2785327 - 2785302 - g 93 -9.9 -5.10933 | opp_overlap 2785306 TGAGTTAAAAGAAAA TAAATTATGGG TTAT CCCACAATTTA CGCTACGTCGATTTA VFMJ11_2602 2784664 - 2786622 + | AsmA family protein TERM 3266 2786657 - 2786633 - T 100 -11.5 -5.73563 | opp_overlap 2786633 AGTAAATCAAAAAAA CGCCCCATAAA TCA CTTATGGGACG TTTTTATTTAAACAT TERM 3267 2786633 - 2786657 + T 95 -8.6 -5.27938 | opp_overlap 2786633 AGTAAATCAAAAAAA CGCCCCATAA ATCAC TTATGGGACG TTTTTATTTAAACAT VFMJ11_2603 2787803 - 2786688 - | sensory box/ggdef family protein TERM 3268 2788073 - 2788045 - H 91 -2.4 -6.17268 | overlap 2788046 CCACAATAAAAAAAA TGCTCTTGCTTA AGAAG TATGCAAGAACT TACCAAAATATGATA TERM 3269 2788072 - 2788046 - H 72 -5.9 -4.27921 | overlap 2788045 CACAATAAAAAAAAT GCTCTTGCTTA AGAAG TATGCAAGAAC TTACCAAAATATGAT VFMJ11_2604 2788154 - 2789122 + | lysophospholipase L2 VFMJ11_2605 2789290 - 2790087 + | hydrolase TERM 3270 2790078 - 2790089 + T 70 -4.4 -4.77986 | opp_overlap 2790072 2790088, overlap 2790072 2790085 2790088 CCTAGAAAACTTATT GCTT AAAT AAGC TTTTTCACTATTTGG TERM 3271 2790085 - 2790135 + T 89 -13.6 -2.81888 | opp_overlap 2790072 2790088 2790089, overlap 2790072 2790078 2790088 2790089 AACTTATTGCTTAAA TAAGCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTGAAAGGATTG TAATTGCATTTAAAA TERM 3272 2790132 - 2790088 - T 82 -8.7 -3.91716 | opp_overlap 2790078 2790085 2790088 2790089, overlap 2790089 TTATTGCTTAAATAA GCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTGAAAGGA TTGTAATTGCATTTA TERM 3273 2790088 - 2790132 + T 95 -13.1 -3.55181 | opp_overlap 2790088 2790089, overlap 2790078 2790085 2790089 TTATTGCTTAAATAA GCTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTGAAAGGA TTGTAATTGCATTTA TERM 3274 2790089 - 2790131 + T 100 -16.6 -2.72385 | opp_overlap 2790089 2790088, overlap 2790088 2790085 TATTGCTTAAATAAG CTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTGAAAGG ATTGTAATTGCATTT TERM 3275 2790131 - 2790089 - T 84 -12.2 -2.94708 | opp_overlap 2790088 2790085 2790089, overlap 2790088 TATTGCTTAAATAAG CTTTTTCACTATTTGGCCTA CCA TAGGCCAAATAGTTGAAAGG ATTGTAATTGCATTT TERM 3276 2790184 - 2790167 - T 89 -7.7 -5.27399 | opp_overlap 2790167, overlap 2790157 CAATACATTAAAAAA GCCAGAG GATT CTCTAGC TTTTTTATTTGATCC TERM 3277 2790167 - 2790184 + T 86 -5.5 -5.68438 | opp_overlap 2790157 2790167 CAATACATTAAAAAA GCCAGAG GATT CTCTAGC TTTTTTATTTGATCC xerC 2791120 - 2790209 - | tyrosine recombinase XerC VFMJ11_2607 2791817 - 2791113 - | 3'-5'-cyclic nucleotide phosphodiesterase dapF 2792599 - 2791814 - | diaminopimelate epimerase TERM 3278 2792712 - 2792687 - R 100 -9.1 -5.00616 | gap 1, opp_overlap 2792687 TCTTGGCTGAAAAAA GAGCAAGCATGC TTA GCAC-CTTGCTC TTAATAATATTTTTA lysA 2793978 - 2792725 - | diaminopimelate decarboxylase TERM 3279 2792799 - 2792787 - G 70 -7.7 -3.72324 | CACGCTTACGAACAA GGTGA GCA TCACC ACCATCCACCATAAT TERM 3280 2793689 - 2793678 - G 80 -4.4 -5.34555 | CTACACCAGAAAAAA CAAC CTTA GTTG GATCGCCACCTGCGG VFMJ11_2610 2794323 - 2794204 - | hypothetical protein cyaY 2794405 - 2794719 + | iron donor protein CyaY VFMJ11_2612 2796907 - 2794865 - | oligopeptidase A TERM 3281 2796510 - 2796522 + g 82 -4.1 -5.4756 | overlap 2796511 TCAAAATCACGCAGT TCATC AAT GATGG TTTTTTGTTGAGCTT VFMJ11_2613 2797060 - 2797899 + | hypothetical protein gor 2798149 - 2799519 + | glutathione-disulfide reductase TERM 3282 2799555 - 2799585 + T 81 -7.6 -4.42062 | opp_overlap 2799560, overlap 2799560 ACCTTAAATTACATA AAAAAGCCCCTATT ATG GATAGGGGCTTTAA TTTATTTAGCGAGTC TERM 3283 2799580 - 2799560 - T 100 -11.2 -5.43487 | opp_overlap 2799555 2799560 AAATTACATAAAAAA GCCCCTAT TATGG ATAGGGGC TTTAATTTATTTAGC TERM 3284 2799560 - 2799580 + T 100 -11.9 -4.27211 | opp_overlap 2799560, overlap 2799555 AAATTACATAAAAAA GCCCCTATT ATG GATAGGGGC TTTAATTTATTTAGC VFMJ11_2615 2802200 - 2799591 - | hypothetical protein TERM 3285 2802235 - 2802221 - R 75 -10 -2.71263 | opp_overlap 2802207 2802221, overlap 2802208 2802223 2802226 AATCCTCTTTAATTA GAGGAC TGT GTCCTC TCAGACCACGTTTTC VFMJ11_2616 2803188 - 2802214 - | AAA ATPase, central domain protein TERM 3286 2803631 - 2803654 + r 100 -13.9 -5.62288 | opp_overlap 2803631 TTATCTATAAAAAAA CGCCGCCAA TTAACC TTGGCGGCG TTTTTGTTTTATTGA TERM 3287 2803654 - 2803631 - R 100 -13.9 -5.64274 | opp_overlap 2803631 TTATCTATAAAAAAA CGCCGCCAA TTAACC TTGGCGGCG TTTTTGTTTTATTGA VFMJ11_2617 2804431 - 2803703 - | copper sensitivity protein ScsC VFMJ11_2618 2804959 - 2804456 - | thiol:disulfide interchange protein TlpA TERM 3288 2804481 - 2804513 + g 82 -4.2 -5.37043 | gap 1, opp_overlap 2804483, overlap 2804480 2804483 2804485 CATAAGCGAGCAAGT AATC-CCACAGGGGT TGTT ATTCCTGTGGTGATG TTTTTTATCTCGCCT TERM 3289 2804483 - 2804511 + g 76 -6.8 -4.31943 | gap 1, opp_overlap 2804483, overlap 2804480 2804481 2804485 TAAGCGAGCAAGTAA TC-CCACAGGGGT TGTT ATTCCTGTGGTGA TGTTTTTTATCTCGC TERM 3290 2804485 - 2804508 + g 73 -9.6 -3.13161 | opp_overlap 2804483, overlap 2804480 2804483 2804481 AGCGAGCAAGTAATC CCACAGGGGT TGTT ATTCCTGTGG TGATGTTTTTTATCT VFMJ11_2619 2807055 - 2804959 - | thiol:disulfide interchange protein DsbD TERM 3291 2807080 - 2807109 + r 83 -8.1 -4.38927 | gap 1, opp_overlap 2807080 2807078 2807082 2807083, overlap 2807084 CTTTAAAAATAAATA TACGTCGAATGTTG TTA CAACATTCGAT-TA TTTATTCTCTAAAAA TERM 3292 2807107 - 2807083 - R 75 -10.1 -2.74298 | opp_overlap 2807080 2807084, overlap 2807082 2807080 2807078 TAAAAATAAATATAC GTCGAATGTTG TTA CAACATTCGAT TATTTATTCTCTAAA TERM 3293 2807084 - 2807106 + r 100 -13.6 -4.30793 | opp_overlap 2807083 2807082 2807080 2807078, overlap 2807080 AAAAATAAATATACG TCGAATGTTG TTA CAACATTCGA TTATTTATTCTCTAA VFMJ11_2620 2807443 - 2807111 - | putative membrane protein, suppressor for copper-sensitivity A VFMJ11_2621 2808166 - 2807579 - | hypothetical protein TERM 3294 2807645 - 2807658 + g 76 -2.4 -5.4505 | AACCACGCTTTGTAA TGGA TGAAAT TCCA TTTTTTCTTGCAAAG VFMJ11_2622 2808432 - 2809757 + | serine/threonine protein kinase TERM 3295 2810831 - 2810817 - g 85 -2.8 -5.74288 | overlap 2810819 ATAAAGAAGAAAAAA TCCCTT TTG AAGGCA TATGGCAACAAACGC VFMJ11_2623 2809787 - 2811214 + | chromosome segregation ATPase VFMJ11_2624 2811226 - 2811792 + | DNA-directed RNA polymerase specialized sigma subunit TERM 3296 2812181 - 2812171 - g 70 -3.2 -4.86621 | ACTGGCAACCAAAAA CCCA AAG TGGA TAACGACATACAGCA TERM 3297 2812884 - 2812860 - g 80 -4.4 -5.30189 | CACAATATTAAAAAA TAAACGAG CAATGGAGT CTCGTTTA AATGTCGTTACTGGG VFMJ11_2625 2811799 - 2813367 + | hypothetical protein TERM 3298 2813389 - 2813420 + T 77 -8.9 -3.60627 | opp_overlap 2813396, overlap 2813396 CATAGAGATAAACCA AAAAAAAGAGCGA AGTGTG TCGCTCTTTTTTG TTTGGCCTACGATAG TERM 3299 2813396 - 2813413 + T 93 -7 -5.64421 | opp_overlap 2813396, overlap 2813389 ATAAACCAAAAAAAA GAGCGA AGTGTG TCGCTC TTTTTTGTTTGGCCT TERM 3300 2813413 - 2813396 - T 100 -7 -6.0458 | opp_overlap 2813396 2813389 ATAAACCAAAAAAAA GAGCGA AGTGTG TCGCTC TTTTTTGTTTGGCCT VFMJ11_2626 2814300 - 2813437 - | hypothetical protein TERM 3301 2814394 - 2814381 - H 80 -2.5 -5.64274 | CTATTGATAAAAAAA TAAAA TAAA TTTTA CGGTTTTTTTCCTAT TERM 3302 2815309 - 2815275 - g 80 -10.1 -3.67864 | CAACCTAACTTCAAA CCAACGATTCCTGTA GACAA TACAGGAACAGTCGG TGAAGTGATTATTAA TERM 3303 2815590 - 2815571 - g 70 -2.9 -5.15634 | opp_overlap 2815571 TATTTCAGCAAAAAA TATCACA ACTGTA CGTGATA CTTATATTGTGACAT VFMJ11_2627 2814528 - 2817299 + | lipoprotein, putative TERM 3304 2817338 - 2817321 - f 100 -9.8 -5.5604 | opp_overlap 2817321 TTAACTAACAAAAAA CCCCGG TACTCG CCGGGG TTTATTTTATCTCAC TERM 3305 2817321 - 2817338 + F 100 -10.5 -4.83243 | opp_overlap 2817321 TTAACTAACAAAAAA CCCCGGT ACTC GCCGGGG TTTATTTTATCTCAC VFMJ11_2628 2817621 - 2817968 + | PRD domain protein / VFMJ11_2629 2817970 - 2818332 + | hypothetical protein VFMJ11_2630 2818339 - 2818635 + | hypothetical protein VFMJ11_2631 2818692 - 2819468 + | hypothetical protein VFMJ11_2632 2819487 - 2820137 + | hypothetical protein TERM 3306 2820151 - 2820172 + F 71 -8.8 -3.05463 | opp_overlap 2820142 2820170 AACCCATATTGGTAA TGCTCTTC AATCAA GAAGAGCA TTACATAACGCAGGT TERM 3307 2820899 - 2820885 - g 75 -2.8 -5.18357 | opp_overlap 2820885 GAATCGATGAAAAAA GCCA TTAAACG TGGC GTTATTTTAGATGTT VFMJ11_2633 2820195 - 2821331 + | probable amidohydrolase / VFMJ11_2634 2821315 - 2822418 + | hypothetical protein VFMJ11_2635 2822431 - 2823171 + | hypothetical protein TERM 3308 2823185 - 2823213 + F 95 -9 -4.8622 | gap 1, opp_overlap 2823185 AAGTTTGCTCCAAAA GGCCAATTATTCG CCCC CGGAT-ATTGGCC TTTTTCATTAAAAAC VFMJ11_2636 2823370 - 2825292 + | PTS system, mannitol TERM 3309 2825301 - 2825318 + T 93 -9.8 -4.24606 | opp_overlap 2825301 TTGGTAAATAAAAAA CCCCGG AACATG CCGGGG TTTTACATATCAATT TERM 3310 2825318 - 2825301 - T 100 -9.8 -5.63517 | opp_overlap 2825301 TTGGTAAATAAAAAA CCCCGG AACATG CCGGGG TTTTACATATCAATT VFMJ11_2637 2825614 - 2825351 - | hypothetical protein VFMJ11_2638 2826494 - 2825598 - | hypothetical protein VFMJ11_2639 2826670 - 2828550 + | cyclic nucleotide binding protein VFMJ11_2640 2828560 - 2829276 + | DNA polymerase III subunit epsilon TERM 3311 2829306 - 2829341 + T 100 -13.5 -3.80841 | opp_overlap 2829311, overlap 2829311 TTGCGATGAAATATA AAAAAGCCGATGAAG ATAAAA CTTCATCGGCTTTTA TTTACTCGTAATAAT TERM 3312 2829311 - 2829336 + T 100 -13.4 -4.95484 | opp_overlap 2829311, overlap 2829306 ATGAAATATAAAAAA GCCGATGAAG ATAAAA CTTCATCGGC TTTTATTTACTCGTA TERM 3313 2829336 - 2829311 - T 100 -13.4 -5.5762 | opp_overlap 2829311 2829306 ATGAAATATAAAAAA GCCGATGAAG ATAAAA CTTCATCGGC TTTTATTTACTCGTA VFMJ11_2641 2830947 - 2829367 - | glycine betaine transporter OpuD TERM 3314 2831107 - 2831123 + r 70 -8.1 -3.17146 | opp_overlap 2831122, overlap 2831105 AAGGGGAATTATCCA TATTGTG AAA CACAATA TCTGTTCTACAAACA TERM 3315 2831144 - 2831162 + r 93 -7.4 -5.5604 | opp_overlap 2831145, overlap 2831145 TCTACAAACAAAAAA ACGGTGAA TAA TTCACCGC TTTTTTATTGGTTAA TERM 3316 2831145 - 2831161 + r 93 -10.9 -3.91997 | opp_overlap 2831145, overlap 2831144 CTACAAACAAAAAAA CGGTGAA TAA TTCACCG CTTTTTTATTGGTTA TERM 3317 2831161 - 2831145 - R 100 -10.9 -6.02919 | opp_overlap 2831144 2831145 CTACAAACAAAAAAA CGGTGAA TAA TTCACCG CTTTTTTATTGGTTA VFMJ11_2642 2832127 - 2831186 - | dipeptide transport system permease protein DppC TERM 3318 2832034 - 2832020 - G 71 -4.2 -4.96106 | overlap 2832022 TACAAACACTAAAAA TACAGC AAA GCTGAA CATCGCAACTTTATC TERM 3319 2832032 - 2832022 - G 71 -6.8 -4.07993 | overlap 2832020 CAAACACTAAAAATA CAGC AAA GCTG AACATCGCAACTTTA VFMJ11_2643 2833062 - 2832130 - | dipeptide transport system permease protein DppB TERM 3320 2832293 - 2832283 - G 70 -5.4 -4.40561 | overlap 2832287 TGCTTCTAAAAATAA GAAC CCA GTTC CCGGCCACTGAAAAA TERM 3321 2832587 - 2832574 - G 73 -2.3 -5.28683 | ATCAATAGTAAAAAA GCCGG ACTC CCAAC CAAGTAAATTATACG TERM 3322 2833202 - 2833248 + r 80 -4.9 -5.27335 | gap 3, opp_overlap 2833208 2833211, overlap 2833209 2833211 TTAAGAAATGAATGA CATAAATG-A--GGTTGCTCTA ACACCA TAGAGCAACCTGTTCATTTATG TTTTTATTTAACCAC TERM 3323 2833209 - 2833238 + r 81 -9.4 -3.76387 | opp_overlap 2833208 2833211, overlap 2833202 2833211 ATGAATGACATAAAT GAGGTTGCTCTA ACACCA TAGAGCAACCTG TTCATTTATGTTTTT TERM 3324 2833211 - 2833236 + r 90 -12 -3.42613 | opp_overlap 2833208 2833211, overlap 2833209 2833202 GAATGACATAAATGA GGTTGCTCTA ACACCA TAGAGCAACC TGTTCATTTATGTTT TERM 3325 2833236 - 2833211 - R 85 -12 -3.08947 | opp_overlap 2833211 2833209 2833202, overlap 2833208 GAATGACATAAATGA GGTTGCTCTA ACACCA TAGAGCAACC TGTTCATTTATGTTT VFMJ11_2644 2834805 - 2833252 - | dipeptide-binding protein TERM 3326 2833706 - 2833720 + g 73 -7.2 -4.00756 | TGCGCTACTTTTGCA TCGTTA ACA TAACGA TTATTTGGTGCCATC VFMJ11_2645 2836593 - 2834878 - | glutathione import ATP-binding protein GsiA TERM 3327 2837123 - 2837144 + H 100 -14.5 -3.727 | opp_overlap 2837123 TCAGAAATGAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAATGTGGTCGG TERM 3328 2837144 - 2837123 - H 100 -14.5 -5.42514 | opp_overlap 2837123 TCAGAAATGAAAAAA GCCTCGTCA TTTC TGACGAGGC TTTAAATGTGGTCGG TERM 3329 2838002 - 2837989 - H 73 -4.5 -4.95302 | GTAAATACAATAAAA TCGGC TGAA GCCAA TAATAATAACTGGGA VFMJ11_2651 2838034 - 2838441 + | cytochrome c5 TERM 3330 2838490 - 2838467 - T 100 -11.8 -5.33405 | CTTACTAAATAAAAA TGCCCATAGA ATTT TCTACGGGCA TTAACGTTATCTATA rep 2840525 - 2838510 - | ATP-dependent DNA helicase Rep TERM 3331 2840694 - 2840677 - H 75 -7.1 -4.22214 | opp_overlap 2840677 AGTCACCTAAAATAA TGAATGA ACGT TCATTCA TTTCATAAGGACACA TERM 3332 2840677 - 2840694 + H 70 -7.1 -3.72576 | opp_overlap 2840677 AGTCACCTAAAATAA TGAATGA ACGT TCATTCA TTTCATAAGGACACA VFMJ11_2653 2840713 - 2841279 + | transcriptional regulator, TetR family TERM 3333 2841642 - 2841616 - g 81 -5.9 -5.09245 | TCAAAAGTAGAAAAA GCAAACTTGAA GAGTA CTCAAGCTCGC TTACCTGCAGCAGAA VFMJ11_2654 2841298 - 2842404 + | periplasmic component of efflux system TERM 3334 2842482 - 2842500 + G 91 -11.8 -4.11216 | AGCTTTTTGATAGCT TTGCTTGG TAT CCAAGCAA TTTTCAAAATGCAGG TERM 3335 2842556 - 2842541 - g 73 -7.6 -4.13654 | overlap 2842544 CCCTGAAATGACAAA TACCGT TGTT ACGGTA ACAACAAGCTACTAT TERM 3336 2843888 - 2843878 - g 73 -5.4 -4.57569 | TGATGTGTTCAAAAA TGCT CGT AGCA AATGAAGAGCCAAAT VFMJ11_2655 2842416 - 2845487 + | acriflavin resistance protein TERM 3337 2845526 - 2845501 - f 75 -4.7 -4.88405 | opp_overlap 2845506, overlap 2845506 AATGGTGAAATAAAA TTAAAGGCTAC TTCG GTAGCCTTTTT TTTATTTGAATAGCG TERM 3338 2845506 - 2845521 + F 100 -9 -6.23545 | opp_overlap 2845501 2845506 TGAAATAAAATTAAA GGCTAC TTCG GTAGCC TTTTTTTTATTTGAA TERM 3339 2845521 - 2845506 - f 89 -9 -4.37871 | opp_overlap 2845506, overlap 2845501 TGAAATAAAATTAAA GGCTAC TTCG GTAGCC TTTTTTTTATTTGAA VFMJ11_2656 2845598 - 2845849 + | ATP synthase subunit eta TERM 3340 2845936 - 2845956 + T 100 -11.2 -5.38326 | opp_overlap 2845936 ATTACGATAAAAAAA GGCTTGGT CATAA ACCAAGCC TTTTTATTTAATTAC TERM 3341 2845956 - 2845936 - T 100 -11.9 -5.67967 | opp_overlap 2845936 ATTACGATAAAAAAA GGCTTGGTC ATA AACCAAGCC TTTTTATTTAATTAC VFMJ11_2657 2847464 - 2845980 - | ketol-acid reductoisomerase TERM 3342 2848153 - 2848165 + G 89 -9.1 -4.66537 | opp_overlap 2848152 2848151 2848148, overlap 2848147 AAGAGAATAGTAATT GGGAG TTA CTCCC TTTTATATTGCCCGA VFMJ11_2658 2847663 - 2848475 + | HTH-type transcriptional regulator IlvY TERM 3343 2848492 - 2848510 + F 100 -14.6 -4.35524 | opp_overlap 2848492 TCTGAAACGAAAAAA GGCTTCCC AAT GGGAAGCC TTTTAAATTTGAGCC TERM 3344 2848510 - 2848492 - f 100 -14.6 -5.37593 | opp_overlap 2848492 TCTGAAACGAAAAAA GGCTTCCC AAT GGGAAGCC TTTTAAATTTGAGCC TERM 3345 2848759 - 2848782 + F 100 -9.6 -4.74103 | opp_overlap 2848762, overlap 2848762 TTAATTTAATCAAAA AAAGCCATCC GATA GGATGGCTTC TTTTTAAATTCAAGC TERM 3346 2848779 - 2848762 - f 100 -11.3 -5.64006 | opp_overlap 2848759 2848762 ATTTAATCAAAAAAA GCCATCC GATA GGATGGC TTCTTTTTAAATTCA TERM 3347 2848762 - 2848779 + F 100 -11.3 -4.47888 | opp_overlap 2848762, overlap 2848759 ATTTAATCAAAAAAA GCCATCC GATA GGATGGC TTCTTTTTAAATTCA TERM 3348 2850620 - 2850636 + F 85 -9.4 -4.08546 | overlap 2850612 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3349 2851413 - 2851425 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3350 2851941 - 2851960 + F 73 -8.6 -3.23708 | overlap 2851944 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3351 2852167 - 2852129 - f 71 -7.6 -3.53091 | ATGTTTCTTTCGAAA CCATTTTTAAAGACTCTC AAG GAGAATACTTAAAGATGG TGGGCGATACCGGGC TERM 3352 2852436 - 2852456 + F 80 -9.1 -3.63326 | GGGACACTGGATATT TGAAGATGT TGG GCATCTTCA TTGCTTCTTTACGTT TERM 3353 2852536 - 2852555 + F 72 -9.2 -2.65808 | opp_overlap 2852527, overlap 2852533 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3354 2855674 - 2855690 + F 85 -9.4 -4.08546 | overlap 2855666 TTGGTCTTCCGGCGA GCGGGT TTTTC ACCCGC TTTATCGTTACTCAT TERM 3355 2856467 - 2856479 + F 89 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3356 2856995 - 2857014 + F 73 -8.6 -3.23708 | overlap 2856998 TAAACAACCAAGGTT GAACTCGT CATT GCGAGTTC TGGTTTTTCGCCGGA TERM 3357 2857211 - 2857178 - f 89 -8.5 -4.55798 | opp_overlap 2857178, overlap 2857165 GAGCTTAAAGCAAAA GCTTTAATCAATAAT AAAA ATTATTAATTAAAAC TCTTTATCTTTAATT TERM 3358 2857291 - 2857310 + F 72 -9.2 -2.65808 | opp_overlap 2857282, overlap 2857288 TAAGGAGGTGATCCA GCCCCAGG TTCC CCTAGGGC TACCTTGTTACGACT TERM 3359 2859195 - 2859214 + F 83 -6.6 -4.98255 | overlap 2859189 AGCAAGCCCTTTTTT CAAAAAAA ATCG TTTTTTTG TTTTTATGGTTAAAG VFMJ11_2664 2859307 - 2859852 + | O-acetyltransferase VFMJ11_2665 2860108 - 2859845 - | hypothetical protein aroE 2860929 - 2860108 - | shikimate 5-dehydrogenase TERM 3360 2860353 - 2860335 - G 73 -9.6 -3.25986 | ATATGACAGGATCAA TCTGAGGA AGC TCCCCAGA TAAGCTTGCTGATGT VFMJ11_2667 2861559 - 2861002 - | putative yrdC domain protein purE 2861759 - 2862244 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 3361 2862552 - 2862540 - g 87 -4.9 -5.40072 | CCGCCTTGAAAAAAA GTTAT TAG ATAAC GCGCATGTTGCAAAT purK 2862247 - 2863359 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit TERM 3362 2863372 - 2863402 + T 75 -10 -2.77182 | opp_overlap 2863362, overlap 2863362 2863369 2863374 TAAATCTCAGGGTAT GAGTAACTTAAT ACTTGTG ATTAAGTTACTC TGATTGGCTCTGAAC VFMJ11_2670 2863966 - 2863397 - | DNA topoisomerase I VFMJ11_2671 2864450 - 2863977 - | Smg protein VFMJ11_2672 2865490 - 2864453 - | protein smf (DNA-processing chain A) VFMJ11_2673 2866641 - 2865571 - | putative peptidoglycan binding domain def 2866759 - 2867271 + | peptide deformylase fmt 2867289 - 2868236 + | methionyl-tRNA formyltransferase TERM 3363 2868252 - 2868277 + F 77 -6.1 -4.65895 | opp_overlap 2868256, overlap 2868256 TTCTTCAAAAATATA AAAAGGTGGCA TAAT TGCCACCTTCG TTTTTAAATGGCAAA TERM 3364 2868273 - 2868256 - f 100 -11.3 -5.36364 | opp_overlap 2868252 2868256 TCAAAAATATAAAAA GGTGGCA TAAT TGCCACC TTCGTTTTTAAATGG TERM 3365 2868256 - 2868273 + F 90 -11.3 -3.83042 | opp_overlap 2868256, overlap 2868252 TCAAAAATATAAAAA GGTGGCA TAAT TGCCACC TTCGTTTTTAAATGG TERM 3366 2868305 - 2868287 - g 72 -10.4 -2.71712 | opp_overlap 2868287, overlap 2868286 CCTTCGTTTTTAAAT GGCAAATA TCG TATTTGCC TTTTTATTTTTGCCA TERM 3367 2868287 - 2868305 + G 100 -10.4 -5.61881 | opp_overlap 2868287 2868286 CCTTCGTTTTTAAAT GGCAAATA TCG TATTTGCC TTTTTATTTTTGCCA sun 2868266 - 2869621 + | ribosomal RNA small subunit methyltransferase B VFMJ11_2677 2869646 - 2871022 + | Trk system potassium uptake protein TrkA TERM 3368 2871056 - 2871084 + G 85 -8.9 -4.17296 | opp_overlap 2871044 2871058, overlap 2871045 2871044 2871043 CGATCCTATTTGTAA TAGGGCTTGTTTT ATC AAAACTTGCCCTA TTTATGTATATCCCG TERM 3369 2871148 - 2871185 + G 73 -7.8 -3.84451 | overlap 2871143 2871156 TTTATCGAATTTGGA CAAGCGGTTGCCATTA CTCACA TAGTGGCATTTGCTTG TTTAACTTTGGGCCG TERM 3370 2871949 - 2871968 + G 71 -5 -4.56914 | overlap 2871950 GTGTTTAATATTGTT TCTGTTGT GACT ACAACGGG TTTTGGTTTGGATGA VFMJ11_2678 2871025 - 2872470 + | TrkH TERM 3371 2872501 - 2872524 + T 100 -14 -5.38054 | opp_overlap 2872501 AGTAACAATAAAAAA TGGCCTAGTA TTTC TACTAGGCCA TTTTTATTTCTAAGC TERM 3372 2872524 - 2872501 - T 100 -14 -5.66229 | opp_overlap 2872501 AGTAACAATAAAAAA TGGCCTAGTA TTTC TACTAGGCCA TTTTTATTTCTAAGC VFMJ11_2679 2873192 - 2872545 - | hemolysin-3 TERM 3373 2873272 - 2873227 - R 84 -12.1 -2.8055 | opp_overlap 2873230, overlap 2873222 2873235 2873237 TACTCGATAAGATCA GTATGACACATTTAAGCGTAC AGTT GTAAGCTTAAATGTGTCATTT TTTCATCAAATTTAT TERM 3374 2873230 - 2873269 + r 100 -18.2 -5.16237 | opp_overlap 2873227 2873222 2873235 2873237 TCGATAAGATCAGTA TGACACATTTAAGCGTAC AGTT GTAAGCTTAAATGTGTCA TTTTTTCATCAAATT TERM 3375 2873264 - 2873235 - R 81 -10.9 -2.84459 | opp_overlap 2873230, overlap 2873227 2873222 2873237 AAGATCAGTATGACA CATTTAAGCGTAC AGTT GTAAGCTTAAATG TGTCATTTTTTCATC VFMJ11_2680 2874079 - 2873291 - | sporulation-control protein TERM 3376 2873731 - 2873748 + g 72 -8.5 -3.45027 | overlap 2873730 CCCACACTTTGGCAT CACCAAT CGTA ATTGGTG TATTTAGTGGGAGAT TERM 3377 2874175 - 2874189 + H 83 -6.4 -5.0133 | overlap 2874177 ATTGACAGTTTATGT TACCCT TAT AGGGTG TTTTTTAAACACATA TERM 3378 2874177 - 2874187 + H 71 -6.8 -4.13561 | overlap 2874175 TGACAGTTTATGTTA CCCT TAT AGGG TGTTTTTTAAACACA VFMJ11_2681 2874320 - 2874487 + | hypothetical protein TERM 3379 2874495 - 2874514 + F 93 -7.8 -5.75538 | opp_overlap 2874495, overlap 2874511 2874513 CGGCATAATTTAAAA GCGTAGCC TATT GGTTGCGC TTTTTCTTTTTTAAA TERM 3380 2874511 - 2874535 + F 72 -2.9 -5.28176 | opp_overlap 2874495, overlap 2874495 2874513 CGTAGCCTATTGGTT GCGCTTTTT CTTTTTT AAAAAGCAC TTTTTTCTACATGAG TERM 3381 2874678 - 2874658 - g 72 -8.5 -3.55563 | overlap 2874675 ATGTCACCGCGTAAA TGAATTAAT CGA ATTAATTCA CCCTGAATGGAAAAA VFMJ11_2682 2874638 - 2874901 + | glycogen debranching enzyme TERM 3382 2874917 - 2874946 + F 73 -7.9 -3.83998 | opp_overlap 2874941, overlap 2874918 GTAACTCACCATGCT ATGATCTGGTTTG TCAC CGAACCAGATCGG TTTCCTATCAAATAA TERM 3383 2874918 - 2874945 + F 83 -11.4 -2.90078 | opp_overlap 2874941, overlap 2874917 TAACTCACCATGCTA TGATCTGGTTTG TCAC CGAACCAGATCG GTTTCCTATCAAATA TERM 3384 2875074 - 2875060 - f 76 -3.6 -5.30155 | TTACCAAGTAAAAAA TAATGC TCA ACATTA CTCACTTGGTACCAT TERM 3385 2875420 - 2875433 + G 73 -2.3 -5.24531 | TTCTTTTTGTGATAG CGGCC TTCG GGTTG TTTTTTATCACCACT ccoG 2875113 - 2876531 + | cytochrome c oxidase accessory protein CcoG TERM 3386 2876554 - 2876568 + F 100 -10 -5.45652 | opp_overlap 2876554 ATTACTGACACAAAA GGCTCA TGA TGAGCC TTTTTTATTGAGAAT TERM 3387 2876568 - 2876554 - f 100 -10 -4.55689 | opp_overlap 2876554 ATTACTGACACAAAA GGCTCA TGA TGAGCC TTTTTTATTGAGAAT VFMJ11_2684 2876588 - 2877571 + | phosphotransferase family protein TERM 3388 2877737 - 2877727 - g 70 -3.2 -4.87291 | TACCTGAATCAAAAA CACC GAC AGTG AATGAATTTTTCTCT VFMJ11_2685 2877612 - 2878214 + | thiol:disulfide interchange protein DsbA TERM 3389 2878253 - 2878234 - T 100 -13.6 -5.56573 | opp_overlap 2878234 ATAAACAAATAAAAA GGGAGCGA ATTA TCGCTCCC TTTTTTTATTCTTTG TERM 3390 2878234 - 2878253 + T 100 -13.6 -6.01369 | opp_overlap 2878234 ATAAACAAATAAAAA GGGAGCGA ATTA TCGCTCCC TTTTTTTATTCTTTG VFMJ11_2686 2879122 - 2878259 - | phospholipid/glycerol acyltransferase VFMJ11_2687 2879568 - 2879221 - | competence protein ComM TERM 3391 2880027 - 2880041 + r 93 -4.2 -5.96219 | opp_overlap 2880027 CTTGTGACAGGAAAC CCGC ATCACTA GCGG TTTTTTTTGTACCTA TERM 3392 2880536 - 2880517 - R 95 -15 -3.08467 | opp_overlap 2880511, overlap 2880510 GGTAGAAATTAGAGA GGGGCTGC AAAA GCAGCCCC ATCGGAATCCGTTTT VFMJ11_2688 2881522 - 2880743 - | hypothetical protein VFMJ11_2689 2882982 - 2881735 - | hypothetical protein VFMJ11_2690 2884711 - 2883185 - | putative Mg chelatase family protein TERM 3393 2885033 - 2885010 - H 81 -5.8 -4.84274 | opp_overlap 2885010 CAAGCACACTAAAAA CCCCCAAGCC AACA AGCAAGGGGG TTTTTTTATAAGTTC TERM 3394 2885010 - 2885033 + H 86 -5.1 -5.66684 | opp_overlap 2885010 CAAGCACACTAAAAA CCCCCAAGC CAACAA GCAAGGGGG TTTTTTTATAAGTTC TERM 3395 2886498 - 2886522 + G 78 -4.1 -5.1861 | overlap 2886501 TAACCAACGTTTAGG CATGGTTCGCC AAT GGCAATCCTTG TTTTTTGATGGTCGC TERM 3396 2886501 - 2886519 + G 72 -4.4 -4.68456 | overlap 2886498 CCAACGTTTAGGCAT GGTTCGCC AAT GGCAATCC TTGTTTTTTGATGGT ilvB_2 2885119 - 2886765 + | acetolactate synthase, large subunit, biosynthetic type VFMJ11_2692 2886765 - 2887010 + | acetolactate synthase small subunit ilvE 2887022 - 2887969 + | branched-chain amino acid aminotransferase TERM 3397 2889171 - 2889154 - g 71 -4.1 -4.90079 | ATCCGAACAACAAAA GCATTCT CGCA AGATTGC CGTTGGGATCGCCTT ilvD 2887987 - 2889828 + | dihydroxy-acid dehydratase TERM 3398 2889854 - 2889878 + G 78 -10.7 -3.01712 | opp_overlap 2889855 2889866 2889868 AACTCTTCATATCAA ACTGGCGCAGA ATA TCTGCGTCAGA TCTTACGAGCGCCAA TERM 3399 2889877 - 2889855 - g 91 -12 -3.83205 | opp_overlap 2889854, overlap 2889866 2889868 ACTCTTCATATCAAA CTGGCGCAGA ATA TCTGCGTCAG ATCTTACGAGCGCCA ilvA 2889833 - 2891365 + | threonine ammonia-lyase, biosynthetic TERM 3400 2891381 - 2891405 + F 100 -10.9 -4.43911 | opp_overlap 2891384 GACCGTACGGCGTAA TAAGGCTAAGT AAA ATTTAGCCTTA TTTTCATTCAAATTT TERM 3401 2891597 - 2891611 + F 85 -8.6 -4.15396 | opp_overlap 2891597 2891596 CTTTATGGCTACAAC TTCGCA TTA TGCGAA TTATTTAATTTAAAA VFMJ11_2696 2891642 - 2891851 + | cold-shock' DNA-binding domain, putative TERM 3402 2891882 - 2891899 + T 100 -9.9 -6.02914 | opp_overlap 2891882 TAGAATTTTTAAAAA TGCTGAC TTCG GTCAGCA TTTTTTTTATCTCGA TERM 3403 2891899 - 2891882 - T 100 -9.9 -4.63542 | opp_overlap 2891882 TAGAATTTTTAAAAA TGCTGAC TTCG GTCAGCA TTTTTTTTATCTCGA TERM 3404 2891968 - 2891939 - T 100 -15.3 -3.07534 | opp_overlap 2891946, overlap 2891946 TAGACTAGACAGATA TAAAAAAGAAGCC TAAT GGCTTCTTTTTTA CTATCAATAGATTAT TERM 3405 2891946 - 2891961 + T 95 -9 -5.22312 | opp_overlap 2891939 2891946 GACAGATATAAAAAA GAAGCC TAAT GGCTTC TTTTTTACTATCAAT TERM 3406 2891961 - 2891946 - T 95 -9 -5.4492 | opp_overlap 2891946, overlap 2891939 GACAGATATAAAAAA GAAGCC TAAT GGCTTC TTTTTTACTATCAAT glmU 2893349 - 2891991 - | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase TERM 3407 2893489 - 2893479 - R 84 -6.8 -5.07567 | TTATATGCTAAAAAA CCGA TCT TCGG GTGAGATAAAAATAA TERM 3408 2893558 - 2893518 - R 74 -3.4 -5.24515 | gap 1, opp_overlap 2893530, overlap 2893530 AAGAAATAAACAAAA TTCAAAAGAAAAGGCGACC AATT GGCCGCCTTCT-TTCTAAT GGTGCTTGATTAACG TERM 3409 2893530 - 2893547 + r 81 -8.3 -4.12254 | opp_overlap 2893518 2893530 AAATTCAAAAGAAAA GGCGACC AATT GGCCGCC TTCTTTCTAATGGTG TERM 3410 2893547 - 2893530 - R 100 -10.5 -5.14698 | opp_overlap 2893530, overlap 2893518 AAATTCAAAAGAAAA GGCGACC AATT GGCCGCC TTCTTTCTAATGGTG atpC 2893990 - 2893568 - | ATP synthase F1, epsilon subunit atpD 2895412 - 2894009 - | ATP synthase F1, beta subunit TERM 3411 2894698 - 2894680 - G 71 -7.4 -3.87112 | CAACGAACAACAGAA CGTCACGA CCT TCGTCACG GAAACGTTCAGCCAT atpG 2896312 - 2895446 - | ATP synthase F1, gamma subunit TERM 3412 2896206 - 2896218 + g 71 -4.8 -4.57073 | GCTTCCATCGACTCT TGCG AGCGA CGCA TTTTTGAAGCGGCTA atpA 2897899 - 2896358 - | ATP synthase F1, alpha subunit TERM 3413 2897347 - 2897329 - G 74 -6 -4.46155 | opp_overlap 2897331, overlap 2897331 CATAGATTGAGAAAA TACCAGAA TCT TTCTGGTT AATGATCGCATCGAT TERM 3414 2897345 - 2897331 - G 77 -8.6 -3.83188 | opp_overlap 2897331, overlap 2897329 TAGATTGAGAAAATA CCAGAA TCT TTCTGG TTAATGATCGCATCG atpH 2898437 - 2897913 - | ATP synthase F1, delta subunit atpF 2898928 - 2898464 - | ATP synthase F0, B subunit VFMJ11_2704 2899247 - 2898990 - | ATP synthase C chain (Lipid-binding protein) atpB 2900118 - 2899306 - | ATP synthase F0, A subunit TERM 3415 2900093 - 2900121 + g 73 -5.9 -4.58236 | overlap 2900107 ATGTAACCAGATTGT GTTAGCGCTTCGC CTG GCGCAGCCATAAC TTTTCCTATTTTCTG atpI 2900438 - 2900127 - | ATP synthase F0, I subunit VFMJ11_2707 2901589 - 2900705 - | chromosome partitioning protein ParB TERM 3416 2900819 - 2900847 + g 73 -8.4 -3.71645 | opp_overlap 2900818 2900815, overlap 2900794 TTTAGAACCAAGAGT TGATGATAATTT ATCCG AAATTGTCATCA TTTCAGTATCAACTT TERM 3417 2900887 - 2900899 + g 74 -4.8 -4.80167 | overlap 2900863 CTTCCTCTTTTTGAG GAGC CAATA GCTC TTTTACTTTTTGCTC VFMJ11_2708 2902379 - 2901582 - | sporulation initiation inhibitor protein soj gidB 2903027 - 2902395 - | 16S rRNA methyltransferase GidB gidA 2904918 - 2903029 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3418 2904263 - 2904243 - G 93 -5.4 -5.54079 | opp_overlap 2904243 2904242 2904245 CTAAAAATGAAAAAA CAGGTGTT GGATT ATCACCTG GTTGTGCTTCTAATC SEQUENCE gi|197336471|ref|NC_011185.1| Vibrio fischeri MJ11 plasmid pMJ100, complete sequence (length 179459) TERM 1 3747 - 3715 - g 76 -10.7 -2.73799 | opp_overlap 3723, overlap 3712 TTTATAAATAAGTTA TCTCAAGGTTTACTC ACT GAGGAAATCTTGAGA ATAGAAACCTAAAAA VFMJ11_B0002 1801 - 3759 + | hypothetical protein VFMJ11_B0001 4704 - 3724 - | DNA replication terminus site-binding protein (Ter protein) TERM 2 4164 - 4188 + g 86 -8 -4.93661 | opp_overlap 4158 TAAAGCTAACATATG CTACATTTGG ATTTG CTAAATGTAG TTTTCTTGTTACTGT VFMJ11_B0003 6008 - 4713 - | hypothetical protein VFMJ11_B0004 6955 - 6071 - | hypothetical protein VFMJ11_B0005 7490 - 6975 - | hypothetical protein VFMJ11_B0006 8407 - 7493 - | hypothetical protein TERM 3 7539 - 7552 + g 76 -2.4 -5.40072 | GCCTGGACTGTTTGA CGTA TCTCTT TACG TTTTTTTAAAAGAAC TERM 4 8333 - 8344 + g 72 -4.4 -4.76312 | TGTTAAGTTTTCACC GTTG TATT CAAC TTTTTCAGTGTTATC VFMJ11_B0007 10008 - 8419 - | putative DNA helicase TERM 5 8562 - 8572 + g 76 -3.2 -5.2112 | CATTACATTGCGCTA CATC AAG GGTG TTTTTTGCTCGTGTT TERM 6 10049 - 10033 - R 73 -9.5 -2.79796 | opp_overlap 10032 10028 10026 GCCTATTTTATTACA CGTTTAC CCC GTAAACG GTCATGTGTTTTTAC TERM 7 10066 - 10082 + r 73 -9.5 -2.92584 | overlap 10054 10065 TCATGTGTTTTTACA CGTTTAC CCC GTAAACG GTTATATGTTTTTAC TERM 8 10099 - 10115 + r 79 -9.5 -3.4529 | TTATATGTTTTTACA CGTTTAC CCC GTAAACG TTATGCTGCTACTGT VFMJ11_B0008 11051 - 10116 - | hypothetical protein VFMJ11_B0009 12946 - 11051 - | exodeoxyribonuclease VIII, putative VFMJ11_B0010 13185 - 14555 + | partitioning protein A VFMJ11_B0011 14566 - 15630 + | DNA-binding protein ParB, putative VFMJ11_B0012 15627 - 16370 + | hypothetical protein TERM 9 16398 - 16421 + G 71 -7.4 -3.93166 | AACGAGAACCTATTG CGAGTGAGGA ACTT TCTCCACTCG TTCGTTTTTTAAAAA VFMJ11_B0013 16367 - 16504 + | hypothetical protein VFMJ11_B0014 16538 - 16741 + | hypothetical protein VFMJ11_B0015 16778 - 17035 + | hypothetical protein VFMJ11_B0016 17978 - 17094 - | hypothetical protein VFMJ11_B0017 18277 - 18143 - | lipoprotein, putative VFMJ11_B0018 18591 - 18274 - | hypothetical protein VFMJ11_B0019 19206 - 18601 - | hypothetical protein VFMJ11_B0020 20406 - 19225 - | putative DGQHR domain protein VFMJ11_B0021 20535 - 23990 + | hypothetical protein VFMJ11_B0022 24682 - 23996 - | hypothetical protein TERM 10 24028 - 24048 + g 71 -4.8 -4.61873 | overlap 24016 CATCAACTTCTATGT TGTTATAG AACCA CTGTAACA TTTTCATTTCTAAGG VFMJ11_B0023 25741 - 24746 - | hypothetical protein VFMJ11_B0024 26231 - 25815 - | DNA-directed RNA polymerase, omega subunit family protein TERM 11 26406 - 26418 + H 73 -7.7 -3.83502 | ACTGTTGCATTTGGG GCAAG CTG CTTGC TTTGCTCTAGCCATA VFMJ11_B0025 26712 - 26897 + | hypothetical protein TERM 12 26904 - 26940 + F 95 -11.9 -3.97709 | gap 1 GAATCTTGATTTTTT CGCAAGCTTACTAAAT ACATTG ATTTAGTAAGC-TGCG TTATTATTGAATCAT VFMJ11_B0026 26980 - 27237 + | hypothetical protein VFMJ11_B0027 27249 - 27470 + | hypothetical protein VFMJ11_B0028 27470 - 27700 + | hypothetical protein VFMJ11_B0029 27782 - 27985 + | hypothetical protein TERM 13 28374 - 28361 - g 89 -5.9 -5.45726 | GAGACCTCAAAAAAA CGCAG TTTG CCGCG ACAATCGAATTTGGT TERM 14 28918 - 28936 + G 72 -10.4 -2.604 | opp_overlap 28915 GTTTGATATAGAGTT CCGTTTTT TTA AAAAACGG TCGATTCATGTATTG VFMJ11_B0030 28124 - 29023 + | hypothetical protein TERM 15 29301 - 29316 + F 76 -7.6 -4.03811 | AAACAATGCTAGTGG GTCTCA GTGT TGAGAC TTGTTTGGTCGTATA VFMJ11_B0031 29379 - 30452 + | hypothetical protein TERM 16 31133 - 31144 + G 70 -5.8 -4.3623 | opp_overlap 31126 31121, overlap 31126 ATATAAAGGTGCAGG GCGT CCTC ACGC TTTAGTTTTTAATGT VFMJ11_B0032 30471 - 31721 + | hypothetical protein VFMJ11_B0033 32423 - 31911 - | hypothetical protein TERM 17 32088 - 32104 + g 100 -5.1 -6.01187 | ATATTCAGTCCAACG CGCCATG TAG TATGGTG TTTTTTTATTTGGTT TERM 18 32789 - 32803 + G 81 -5.6 -5.11389 | opp_overlap 32786, overlap 32791 GTTGAGATTCAAGGC CACCCA AGG TGGGAG TTTTCTTTATATTCT VFMJ11_B0034 32603 - 33145 + | hypothetical protein VFMJ11_B0035 33571 - 33146 - | hypothetical protein VFMJ11_B0036 33782 - 34669 + | ParA family protein TERM 19 34700 - 34712 + G 83 -3.3 -5.63517 | ACAACAAAAAAACCG CTGCC GAT GACAG TTTTTTATTTGGGGA VFMJ11_B0037 34678 - 35019 + | hypothetical protein VFMJ11_B0038 35056 - 35490 + | lipoprotein, putative TERM 20 35604 - 35616 + F 80 -4.9 -5.24129 | ACGGATAGTCCAACT GTTTT TAG AAAAC TTTTTTATGGAAGCG VFMJ11_B0039 35721 - 35990 + | hypothetical protein VFMJ11_B0040 36430 - 36002 - | hypothetical protein VFMJ11_B0041 36578 - 36880 + | hypothetical protein TERM 21 37128 - 37118 - g 73 -5.4 -4.57516 | opp_overlap 37120 37121, overlap 37121 ATATCGAAATCAAAA CATG CTT CATG CTGAGGCGTTTTTGA TERM 22 37120 - 37136 + G 71 -5.1 -4.56597 | opp_overlap 37118 37121, overlap 37121 ATCGAAATCAAAACA TGCTTCA TGC TGAGGCG TTTTTGAAAAAAACC VFMJ11_B0042 36885 - 37310 + | hypothetical protein VFMJ11_B0043 37349 - 37849 + | hypothetical protein VFMJ11_B0044 37922 - 38320 + | hypothetical protein TERM 23 38344 - 38365 + F 78 -2.3 -5.65177 | opp_overlap 38335 38336 AAAAATGTATAAAAA GTCATAC TCAATATT GTATGGC TTTTTTTATGGCTGT VFMJ11_B0045 38540 - 38971 + | hypothetical protein TERM 24 38956 - 38973 + F 75 -4.9 -4.90013 | opp_overlap 38956, overlap 38948 AATAAAAGGAAAGAC GATCAGT TTGA ATTGATC TTTTTCCTTACATTA VFMJ11_B0046 39012 - 41243 + | hypothetical protein TERM 25 41273 - 41284 + G 76 -4.4 -5.07275 | TTTTTTTTATTCTTA CCAT TACT ATGG TTTTTGTATCTATGG VFMJ11_B0047 41240 - 41548 + | hypothetical protein VFMJ11_B0048 41567 - 42448 + | hypothetical protein VFMJ11_B0049 42445 - 42744 + | hypothetical protein VFMJ11_B0050 42989 - 43306 + | hypothetical protein VFMJ11_B0051 43333 - 44181 + | hypothetical protein TERM 26 44279 - 44259 - f 83 -11.3 -2.61548 | opp_overlap 44255 44254, overlap 44255 TGTCACTACAATGGA TTTCAGGTT ATA AACCTGAAA GCAAAGTTTTTTATT TERM 27 44299 - 44310 + F 70 -4.4 -4.6644 | overlap 44309 AGTTTTTTATTCTTA CCAT TACT ATGG TTTTTAAAATCTATT VFMJ11_B0052 44357 - 44536 + | hypothetical protein TERM 28 45190 - 45171 - g 71 -6.4 -4.25859 | opp_overlap 45171 GTGAACCTAAAAGAA TGGGTTGC AGAC GCAAACCA TGATTACTACGGAAT VFMJ11_B0053 45003 - 46550 + | type I restriction-modification system, M subunit TERM 29 46619 - 46606 - g 76 -2.3 -5.37865 | opp_overlap 46606 CGAACAATTAAAAAA GGTAC TGTG GTTCC TTTCATTGAAATGGC VFMJ11_B0054 46540 - 47820 + | restriction modification system S subunit TERM 30 47861 - 47826 - f 81 -8.4 -4.26461 | gap 1, opp_overlap 47831, overlap 47823 47831 AGCAATCTAAAATAA TCAAA-GCCTAGCTCAT TGA AAGAGCTGGGCTTTTGA GTTTAATATCATAAA TERM 31 47831 - 47855 + F 100 -10.7 -4.38313 | opp_overlap 47826 47823 47831 TCTAAAATAATCAAA GCCTAGCTCAT TGA AAGAGCTGGGC TTTTGAGTTTAATAT TERM 32 47855 - 47831 - f 85 -8.5 -4.20834 | opp_overlap 47831, overlap 47826 47823 TCTAAAATAATCAAA GCCTAGCTCAT TGA AAGAGCTGGGC TTTTGAGTTTAATAT TERM 33 47940 - 47926 - g 70 -8.6 -3.42197 | opp_overlap 47926 47923 47928 GAAGAAATGCTAGAA GACCAT TGT ATGGTC TGGTTTAGTAACCTT TERM 34 50205 - 50191 - g 87 -5 -5.52909 | opp_overlap 50196 50197, overlap 50192 GAAGATGGAAAAAAA CGCTTT GAT AAAGCA GCTCTATCGTTGTCT TERM 35 50556 - 50546 - g 76 -2.4 -5.37171 | AAGATGAAATAAAAA CTCG TAC CGTG AAGAATGCTGTAGCA VFMJ11_B0055 47899 - 50985 + | type I site-specific deoxyribonuclease TERM 36 50991 - 51023 + F 100 -12.9 -5.50723 | opp_overlap 50995 50996, overlap 50996 TAATCCTTAAATTAT TAAATGGCGTATTCA ATG TGGATACGCCTTTTA TTTTTCTTTTAGTAG TERM 37 51019 - 50995 - f 70 -7.1 -3.8901 | opp_overlap 50991 50996, overlap 50996 CCTTAAATTATTAAA TGGCGTATTCA ATG TGGATACGCCT TTTATTTTTCTTTTA TERM 38 50996 - 51018 + F 100 -12.8 -5.51078 | opp_overlap 50995 50996, overlap 50991 CTTAAATTATTAAAT GGCGTATTCA ATG TGGATACGCC TTTTATTTTTCTTTT TERM 39 51018 - 50996 - f 79 -10.6 -2.92924 | opp_overlap 50996 50991, overlap 50995 CTTAAATTATTAAAT GGCGTATTCA ATG TGGATACGCC TTTTATTTTTCTTTT TERM 40 51037 - 51064 + F 73 -4.2 -4.88795 | gap 1, opp_overlap 51040 51043 51044, overlap 51044 TATTTTTCTTTTAGT AGATAATCGGTGC TTA GTACCG-TTATCG TTTGTTTTATTCGGT TERM 41 51044 - 51058 + F 73 -7.8 -3.74652 | opp_overlap 51043 51040 51044, overlap 51037 CTTTTAGTAGATAAT CGGTGC TTA GTACCG TTATCGTTTGTTTTA VFMJ11_B0056 51118 - 51312 + | hypothetical protein TERM 42 53244 - 53260 + G 71 -6.6 -4.09739 | AGATGTCTTATCGTA TTGGCT TAATC AGCCAA TTTTAAAAGGATTAA VFMJ11_B0057 51421 - 54663 + | hypothetical protein TERM 43 54692 - 54729 + F 77 -8.6 -3.64902 | overlap 54688 TATTTATCGTTGTCA GAGGAGCTTCAGTA CCAATTCGTA TAGTGAAGCTCCTC TTAGTTTATAATATT TERM 44 55274 - 55259 - g 75 -2.6 -5.21709 | opp_overlap 55269, overlap 55269 GTTGAGAGTAAAAAA CTTTCA AAAG TAAAAG GTGTTTTAGATTTTA VFMJ11_B0058 55055 - 55534 + | hypothetical protein VFMJ11_B0059 55591 - 55848 + | hypothetical protein VFMJ11_B0060 55959 - 56468 + | hypothetical protein VFMJ11_B0061 56793 - 57134 + | hypothetical protein TERM 45 57141 - 57165 + F 100 -14.3 -5.01732 | CACTTATAAGTATTC CGCCGCCTTAC TTA GTGAGGTGGCG TTTTTTGAAAAAATT VFMJ11_B0062 57217 - 58137 + | hypothetical protein TERM 46 58342 - 58360 + F 100 -10.3 -6.18768 | ACCCTTAGCATTTGC GCCCAAC TTTAT GTTGGGC TTTTTTTTGTCTTTT VFMJ11_B0063 58495 - 58893 + | hypothetical protein VFMJ11_B0064 58971 - 59282 + | hypothetical protein TERM 47 59345 - 59324 - f 72 -9.5 -2.69601 | opp_overlap 59323 CTGACATTAAAGCTA TCCCCCTTA GAAA TAAGGGGAA CTCATTCAAAAGGTG TERM 48 59416 - 59443 + F 100 -9.9 -5.0916 | opp_overlap 59416 TGAAGCGCAAAAAAA GCCCTCCTTTT TTCGAT AACAGGAGGGC TTTTTATATTAGGCG TERM 49 59443 - 59416 - f 100 -9.9 -5.47399 | opp_overlap 59416 TGAAGCGCAAAAAAA GCCCTCCTTTT TTCGAT AACAGGAGGGC TTTTTATATTAGGCG VFMJ11_B0065 59589 - 60068 + | hypothetical protein TERM 50 60080 - 60108 + F 76 -9.7 -2.87239 | opp_overlap 60079 60081, overlap 60087 GTAACATAAATCAAC AGGATAAGGTATT ATC AATGCCTTATCCC TACTATTTCAATATT TERM 51 60107 - 60081 - f 87 -11 -3.41709 | opp_overlap 60080 60087, overlap 60079 TAACATAAATCAACA GGATAAGGTATT ATC AATGCCTTATCC CTACTATTTCAATAT VFMJ11_B0066 60137 - 60751 + | hypothetical protein TERM 52 61113 - 61097 - g 73 -7.3 -4.00486 | opp_overlap 61097 CCTACAAGATAAGAA CACCATT AAA AACGGTG CTATTTATCTTAGCT VFMJ11_B0067 60793 - 61212 + | hypothetical protein VFMJ11_B0068 61199 - 61429 + | hypothetical protein VFMJ11_B0069 61467 - 62201 + | lipoprotein, putative VFMJ11_B0070 62207 - 62530 + | hypothetical protein TERM 53 62698 - 62721 + F 93 -7.6 -5.47218 | opp_overlap 62696 62698 AAATGAATGAAAAGA TAACAGATTA ATGA TGATCTGTTA TTTTTTTAAATAGGG TERM 54 62794 - 62810 + F 70 -2.3 -5.24531 | ACTTGGATGCATTCT GAAGTAT GGA ATAATTC TTTTTTCTGAAAAAT TERM 55 62839 - 62877 + F 93 -6 -5.77988 | ATACTTATTTATAAG CCACCACTTTTATATCTA ATC TGGATGATAATGTGGTGG TTTTTTTGTATATGT TERM 56 62898 - 62915 + F 95 -8.5 -5.31456 | opp_overlap 62897 62898 TTGTATATGTTAAAT GTAGTAC CGTT GTACTAC TTTTTTGTAAATTAA TERM 57 62923 - 62951 + F 75 -6.9 -4.09628 | opp_overlap 62927 62931, overlap 62931 TGTACTACTTTTTTG TAAATTAAGAGAT TTA GTCTCTTTATTTA TTCTTATTTGCGGTA TERM 58 62931 - 62943 + F 70 -4.1 -4.79953 | opp_overlap 62927 62931, overlap 62923 TTTTTTGTAAATTAA GAGAT TTA GTCTC TTTATTTATTCTTAT VFMJ11_B0071 63009 - 63599 + | hypothetical protein TERM 59 63624 - 63651 + F 100 -13.6 -5.67063 | CCATTTATTTTTTGC GCCTTGTAGTAC CTAT GTATTACAAGGC TTTTTTTGTCGTACC VFMJ11_B0072 63830 - 64417 + | hypothetical protein VFMJ11_B0073 64475 - 64924 + | hypothetical protein TERM 60 64962 - 64998 + F 83 -7.6 -4.67354 | gap 1, opp_overlap 64952 64981, overlap 64964 AAACATAAACAGTAT TG-CTTAAGATACATAG TAAC TTATGTGTCTTAAGTCA TTTTATATCTGTATT TERM 61 64964 - 64995 + F 83 -10.4 -3.24884 | opp_overlap 64952 64981, overlap 64962 ACATAAACAGTATTG CTTAAGATACATAG TAAC TTATGTGTCTTAAG TCATTTTATATCTGT VFMJ11_B0074 65274 - 65507 + | hypothetical protein VFMJ11_B0075 65516 - 65749 + | hypothetical protein TERM 62 66080 - 66070 - g 73 -6.8 -4.20707 | GCTTACGAAAAAAGA GTCC AAA GGAC AGCTAACAGAGTTAT VFMJ11_B0076 65771 - 66496 + | hypothetical protein TERM 63 66510 - 66543 + F 95 -11.9 -3.97088 | opp_overlap 66510 AGTGAGTAAATAAAA GCCACCACATTAA CTTACTTA TTAGTGTGGTGGC TTTAGTGTTATGAAG TERM 64 66543 - 66510 - f 100 -10.4 -4.9448 | opp_overlap 66510 AGTGAGTAAATAAAA GCCACCACATTAAC TTACTT ATTAGTGTGGTGGC TTTAGTGTTATGAAG VFMJ11_B0077 66597 - 66866 + | hypothetical protein VFMJ11_B0078 67076 - 67648 + | hypothetical protein VFMJ11_B0079 67661 - 68386 + | hypothetical protein TERM 65 68428 - 68442 + F 100 -7.1 -6.07627 | CTGACTGACTTTTTG CCCTC TGAAT GAGGG TTTTTTTTTGCGACT VFMJ11_B0080 68555 - 68935 + | hypothetical protein TERM 66 68955 - 68980 + F 100 -10.5 -5.61596 | opp_overlap 68955 CCACAAAACAAAAAA GGCTTAAGTGT TTAT GCGCTTAAGCC TTTTTTTGTCCCCCT TERM 67 68980 - 68955 - f 100 -7.6 -5.86976 | opp_overlap 68955 CCACAAAACAAAAAA GGCTTAAGTG TTTATG CGCTTAAGCC TTTTTTTGTCCCCCT VFMJ11_B0081 69123 - 69581 + | hypothetical protein VFMJ11_B0082 69590 - 70180 + | hypothetical protein VFMJ11_B0083 70207 - 70551 + | hypothetical protein VFMJ11_B0084 70588 - 70911 + | hypothetical protein TERM 68 72075 - 72091 + G 70 -5.9 -4.39828 | TTCATGATCGTCATG CGAAATA CCT TGTTTCG TTTTCTGAAGATATT VFMJ11_B0085 71141 - 72235 + | hypothetical protein TERM 69 72244 - 72262 + F 89 -8.8 -4.36596 | CTCTTAATCCTTTTG GGCCAGTA AAA TTCTGGCC TTTATTCATTATGAA VFMJ11_B0086 72481 - 72765 + | hypothetical protein VFMJ11_B0087 72829 - 73158 + | hypothetical protein TERM 70 73173 - 73192 + F 93 -5.7 -6.07374 | ATTCGTATCTATTTG GGCTAGT TGAGAT ACTGGCC TTTTTTCTTTTTTCT VFMJ11_B0088 73477 - 74433 + | hypothetical protein TERM 71 74474 - 74446 - f 91 -13.3 -3.30979 | opp_overlap 74451 74470 74471, overlap 74451 TAAAGTTAAATAAAT GAAAAGCCCTTTC TTA GAAAGGGCTTTTT TTGTTTTTCTGAAAA TERM 72 74469 - 74451 - f 100 -13.2 -4.72863 | opp_overlap 74451, overlap 74446 TTAAATAAATGAAAA GCCCTTTC TTA GAAAGGGC TTTTTTTGTTTTTCT TERM 73 74451 - 74469 + F 100 -13.2 -6.23317 | opp_overlap 74446 74451 TTAAATAAATGAAAA GCCCTTTC TTA GAAAGGGC TTTTTTTGTTTTTCT VFMJ11_B0089 74593 - 74748 + | hypothetical protein TERM 74 74958 - 74942 - g 78 -3.7 -5.32565 | overlap 74934 TAACCAATTAAAAAA TGCTTTT TCA AACAGCA CAACACCAGCTCCAT VFMJ11_B0090 74760 - 75749 + | hypothetical protein TERM 75 75770 - 75789 + F 100 -13.6 -6.15536 | opp_overlap 75770 AATAATATCAAAAAA GCCGCTCA ATAA TGAGCGGC TTTTTTTTGTTCATT TERM 76 75789 - 75770 - f 100 -13.6 -5.31545 | opp_overlap 75770 AATAATATCAAAAAA GCCGCTCA ATAA TGAGCGGC TTTTTTTTGTTCATT VFMJ11_B0091 76163 - 78220 + | hypothetical protein TERM 77 78254 - 78229 - T 100 -9.1 -5.4756 | opp_overlap 78232, overlap 78232 AAGCTGAATAAAAAA GAAGCCTGTAA ATTT TTACAGGCTTT TTTGTATTAATGCAT TERM 78 78251 - 78232 - T 100 -10.8 -4.81306 | opp_overlap 78232, overlap 78229 CTGAATAAAAAAGAA GCCTGTAA ATTT TTACAGGC TTTTTTGTATTAATG TERM 79 78232 - 78251 + T 100 -10.8 -5.49569 | opp_overlap 78229 78232 CTGAATAAAAAAGAA GCCTGTAA ATTT TTACAGGC TTTTTTGTATTAATG VFMJ11_B0092 83641 - 78293 - | hypothetical protein TERM 80 78921 - 78967 + g 89 -10.4 -4.26903 | TTTAAATTTACTTGT CGTGATGCTTTAGAGTTAAA AATTTGA TTTAACTCTAAGGCAGAACG TTTTGGTGGAATGGC TERM 81 83276 - 83292 + g 75 -5.9 -4.75518 | overlap 83277 ATAGATTCTATTTTT TTCAGAA TTT TTCTGAG TTTTAGTTTTATCTG VFMJ11_B0093 84994 - 83654 - | hypothetical protein VFMJ11_B0094 86034 - 84994 - | hypothetical protein TERM 82 85669 - 85694 + g 81 -6.9 -4.7629 | overlap 85671 TTCCATTTCTTTATG TAGCTCATCAA TGTA TTGTTGAGCTG TTTTTACGTTAATCC TERM 83 85671 - 85692 + g 73 -7.3 -3.99461 | overlap 85669 CCATTTCTTTATGTA GCTCATCAA TGTA TTGTTGAGC TGTTTTTACGTTAAT VFMJ11_B0095 87054 - 86038 - | hypothetical protein VFMJ11_B0096 87604 - 87032 - | hypothetical protein VFMJ11_B0097 87665 - 88186 + | hypothetical protein VFMJ11_B0098 88176 - 89567 + | hypothetical protein TERM 84 89621 - 89598 - T 100 -14 -5.06414 | opp_overlap 89598 TTTCCTCAATAAAAA CGCAACTAAG AAAA CTTAGTTGCG TTTTTTTATAAACTA TERM 85 89598 - 89621 + T 100 -14 -5.626 | opp_overlap 89598 TTTCCTCAATAAAAA CGCAACTAAG AAAA CTTAGTTGCG TTTTTTTATAAACTA VFMJ11_B0099 90961 - 89627 - | toprim domain protein VFMJ11_B0100 92006 - 90942 - | hypothetical protein VFMJ11_B0101 92452 - 92003 - | hypothetical protein VFMJ11_B0102 92514 - 92810 + | hypothetical protein VFMJ11_B0103 92812 - 93918 + | hypothetical protein VFMJ11_B0104 93919 - 94530 + | hypothetical protein TERM 86 95620 - 95584 - g 85 -7.6 -4.92757 | gap 1, opp_overlap 95595, overlap 95590 95591 GTATCAACAATAAAA GATAAAGTTAATGCATC GGGT GATGCATTAA-TCTACC TCACACAGCAACTTG TERM 87 95615 - 95590 - g 82 -7.7 -4.57514 | opp_overlap 95595, overlap 95584 95591 ACAATAAAAGATAAA GTTAATGCATC GGGT GATGCATTAAT CTACCTCACACAGCA TERM 88 95614 - 95591 - g 85 -11.2 -3.32068 | opp_overlap 95595, overlap 95590 95584 CAATAAAAGATAAAG TTAATGCATC GGGT GATGCATTAA TCTACCTCACACAGC VFMJ11_B0105 94549 - 97182 + | hypothetical protein VFMJ11_B0106 97194 - 97970 + | hypothetical protein TERM 89 97977 - 98001 + T 100 -10.2 -5.58074 | opp_overlap 97977 CAAGAATAAAAAAAA CCTCAAATTT ATACA AAATTTGAGG TTTTTTTAATGGTTA TERM 90 98001 - 97977 - T 100 -10.2 -6.22691 | opp_overlap 97977 CAAGAATAAAAAAAA CCTCAAATTT ATACA AAATTTGAGG TTTTTTTAATGGTTA VFMJ11_B0107 98754 - 98014 - | hypothetical protein VFMJ11_B0108 99087 - 98761 - | lipoprotein, putative VFMJ11_B0109 100640 - 99177 - | hypothetical protein VFMJ11_B0110 101219 - 100653 - | prokaryotic N- methylation motif domain protein VFMJ11_B0111 102365 - 101247 - | bacterial type II secretion system protein F domain TERM 91 102256 - 102267 + g 70 -3 -5.14563 | opp_overlap 102256 ATAATATCTAAATAT TCAT AAAT ATGA TTTTTTGGTAAAACA VFMJ11_B0112 104040 - 102358 - | ATP-binding protein, putative TERM 92 103724 - 103735 + g 74 -4.4 -4.9755 | GAATTTGAACCATGT TGCT CGCA AGCA TTTTTGATTATGTCT TERM 93 103751 - 103761 + g 71 -4 -4.87389 | TTTTTGATTATGTCT TTTG ATA CAAA TTTCTTTTTAAACTC VFMJ11_B0113 104823 - 104050 - | hypothetical protein VFMJ11_B0114 106387 - 104810 - | hypothetical protein TERM 94 106216 - 106230 + g 71 -4.2 -4.97158 | opp_overlap 106218 CTACCCCAACCTCAA TAGCGC TTG GCGATA TTTTATTTAATATAC VFMJ11_B0115 108011 - 106389 - | lipoprotein, putative TERM 95 107610 - 107623 + g 74 -4.5 -4.86621 | AGCTAAACTCACAGT GCTTG ATGA CGAGC TTTTTGATTCGACAT VFMJ11_B0116 109213 - 108008 - | hypothetical protein VFMJ11_B0117 109533 - 109291 - | hypothetical protein TERM 96 109487 - 109466 - G 70 -8 -3.78022 | gap 1 CCCAGAGGTACTAAA GGGAG-GGC AACTG GCCACTCCC ATAAAAAAACTTTAG VFMJ11_B0118 110711 - 109542 - | twitching motility protein PilT VFMJ11_B0119 111694 - 110717 - | hypothetical protein VFMJ11_B0120 112232 - 111705 - | lipoprotein, putative VFMJ11_B0121 112533 - 113153 + | hypothetical protein TERM 97 113203 - 113232 + T 100 -13.1 -5.26316 | gap 1, opp_overlap 113199 113198 AAAAAGAAAGCGTAA TCCCCTATCATTGA TAA TCA-TGATAGGGGA TTTTTTATAGACTAA VFMJ11_B0122 116248 - 113237 - | hypothetical protein VFMJ11_B0123 116593 - 116258 - | hypothetical protein VFMJ11_B0124 117842 - 116610 - | hypothetical protein VFMJ11_B0125 118600 - 117839 - | hypothetical protein VFMJ11_B0126 118888 - 118613 - | hypothetical protein VFMJ11_B0127 119403 - 119014 - | hypothetical protein VFMJ11_B0128 120596 - 119415 - | hypothetical protein VFMJ11_B0129 122038 - 120617 - | hypothetical protein TERM 98 121965 - 121978 + g 90 -3.1 -5.95286 | GAGCCGACAATCATT CTACG ACGT TGTAG TTTTTTCTTTTTGAT VFMJ11_B0130 123173 - 122031 - | hypothetical protein VFMJ11_B0131 123970 - 123275 - | hypothetical protein VFMJ11_B0132 124542 - 123970 - | hypothetical protein VFMJ11_B0133 125267 - 124539 - | hypothetical protein VFMJ11_B0134 125557 - 125237 - | hypothetical protein TERM 99 125706 - 125726 + G 82 -7.7 -4.61868 | TAAGTTTTCTGAATG GTTTTATTC TCC GAGTAAAAC TTTTGTATATGCGTA VFMJ11_B0135 125632 - 126180 + | hypothetical protein VFMJ11_B0136 126197 - 127603 + | hypothetical protein VFMJ11_B0137 127600 - 127770 + | hypothetical protein TERM 100 127956 - 127970 + G 78 -4.2 -5.26119 | overlap 127957 ATGTATTGTATTTTC TCGCTG CAT TAGCGG TTTTATTTTTACCAA TERM 101 128651 - 128668 + G 71 -6.3 -4.1822 | gap 1, overlap 128653 GGAGAACCGCTGGAC GCTGCTGT GAT ACAGC-GC TTTATTGAGCTAAGA TERM 102 129713 - 129693 - g 71 -4.1 -4.94962 | ATAACTTAAATAAAA TAGATGA AACAGAG TCATCTA ATGCTGTCATTAAAG TERM 103 130260 - 130272 + G 70 -7.7 -3.65224 | CTTTAAATGATGGTC GTGAC AAT GTCAC TTATTCCGCTGAAGT TERM 104 130415 - 130400 - g 70 -3.3 -4.85653 | opp_overlap 130400 CATACAGAAAATAAA GAGAT GTCATT ATCTC ATTTATTACTTTCAG VFMJ11_B0138 127802 - 130840 + | hypothetical protein VFMJ11_B0139 130862 - 131377 + | putative transglycosylase SLT domain protein VFMJ11_B0140 131382 - 133853 + | DNA topoisomerase domain protein VFMJ11_B0141 133863 - 136151 + | ATP-dependent DNA helicase Rep TERM 105 136208 - 136228 + G 70 -8.3 -3.39207 | overlap 136212 CGCTTATGAAGTCTT GTAACTCTG AAT CAGCGTTAC TTGATGATTTTGATT VFMJ11_B0142 136144 - 136371 + | hypothetical protein VFMJ11_B0143 136374 - 137447 + | DNA primase TraC, putative VFMJ11_B0144 137522 - 138187 + | hypothetical protein VFMJ11_B0145 138187 - 139011 + | lipoprotein, putative TERM 106 139180 - 139191 + G 78 -3 -5.40464 | opp_overlap 139180 AATAGATACAAAGAC CTTT CAAG AAAG TTTTTATTTATCATG VFMJ11_B0146 139004 - 139816 + | hypothetical protein VFMJ11_B0147 140353 - 139880 - | hypothetical protein VFMJ11_B0148 141119 - 140370 - | DNA/RNA non-specific endonuclease TERM 107 140731 - 140751 + g 71 -6.1 -4.14004 | GCTCCAGTATTCATC TGTGCTACT TGT GGAAGCACA TTTGTCATTATATTG VFMJ11_B0149 141187 - 141303 + | hypothetical protein TERM 108 141425 - 141450 + F 80 -10.6 -3.05384 | opp_overlap 141425 TGGGTTGTAAGTTAA CGCAACAAAA TAACCC TTTTGTTGCG TTAAATAGCACCACA TERM 109 141450 - 141425 - f 83 -10.6 -3.17075 | opp_overlap 141425 TGGGTTGTAAGTTAA CGCAACAAAA TAACCC TTTTGTTGCG TTAAATAGCACCACA VFMJ11_B0150 141554 - 142339 + | TfoX C-terminal domain family protein VFMJ11_B0151 142314 - 142547 + | hypothetical protein VFMJ11_B0152 142569 - 145109 + | spermine/spermidine synthase family protein VFMJ11_B0153 145459 - 145665 + | hypothetical protein VFMJ11_B0154 145680 - 146036 + | hypothetical protein TERM 110 146085 - 146067 - T 100 -7.4 -6.13503 | opp_overlap 146067 TAGTAATAAAAAAAA CACTCGTT AAT AGCGAGTG TTTTTTTGTTTAAAC TERM 111 146067 - 146085 + T 100 -9.6 -5.95539 | opp_overlap 146067 TAGTAATAAAAAAAA CACTCGTT AAT AGCGAGTG TTTTTTTGTTTAAAC VFMJ11_B0155 147896 - 146121 - | histidine kinase VFMJ11_B0156 148105 - 148461 + | hypothetical protein TERM 112 148465 - 148483 + F 77 -5.4 -4.89339 | opp_overlap 148465 ATTGAGGGTTAAGAA TGGTTTTT CAG AAAAATCA TTTTTATAGGTGCTT VFMJ11_B0157 148499 - 148714 + | hypothetical protein TERM 113 148745 - 148763 + F 89 -9 -4.33153 | opp_overlap 148749 TATTTTCATTGATAG GTAACATT ATT AATGTTAC TTTATTGGTGTTGAA VFMJ11_B0158 148797 - 151883 + | hypothetical protein TERM 114 151918 - 151906 - g 77 -6.3 -4.49377 | opp_overlap 151905 TCTAGAACAAAAGAA GCTTA TTA TAAGC GTATGTATATTGCTT VFMJ11_B0159 151885 - 152181 + | hypothetical protein VFMJ11_B0160 152181 - 152483 + | hypothetical protein VFMJ11_B0161 152488 - 152805 + | hypothetical protein VFMJ11_B0162 152818 - 153018 + | hypothetical protein VFMJ11_B0164 153065 - 153328 + | hypothetical protein VFMJ11_B0163 153436 - 153311 - | hypothetical protein TERM 115 153891 - 153877 - g 78 -2.8 -5.40072 | overlap 153885 CGTTTTTTAAAAAAA CGTACA GAG TTTACG GCTAAACATAGCTTA VFMJ11_B0165 153499 - 154389 + | hypothetical protein VFMJ11_B0166 154393 - 155001 + | hypothetical protein VFMJ11_B0167 155023 - 155295 + | hypothetical protein TERM 116 155307 - 155364 + F 73 -7.3 -3.97694 | opp_overlap 155307, overlap 155308 155311 TTAATAATTAAAACT TGCATACTTATTTGAACCCAGCTAA CCTTCTCA TTGTATGGGTTCAAATAAGTATGGG TTCTTATGTCTGTTT TERM 117 155308 - 155363 + F 71 -8.6 -2.96989 | opp_overlap 155307, overlap 155307 155311 TAATAATTAAAACTT GCATACTTATTTGAACCCAGCTAA CCTTCTCA TTGTATGGGTTCAAATAAGTATGG GTTCTTATGTCTGTT VFMJ11_B0168 155370 - 156509 + | hypothetical protein VFMJ11_B0169 156923 - 156534 - | hypothetical protein TERM 118 156846 - 156825 - G 76 -4.5 -5.06103 | gap 1, opp_overlap 156838, overlap 156827 ACAACTGTTAAAAAA TGGAAATCCA ATG CGGATT-CCA ACCCGTCTATTAGCT TERM 119 157142 - 157125 - R 83 -7 -4.67234 | opp_overlap 157125 AGGGAATGTGAAAAA GACCTC ATGAAA GAGGTC TTATGGATAAAAAGA VFMJ11_B0170 157662 - 157234 - | hypothetical protein VFMJ11_B0171 158641 - 157670 - | hypothetical protein TERM 120 158522 - 158534 + g 70 -9.1 -3.1793 | overlap 158521 158522 ACGCTCTTGACGTTG GCGAG CCG CTCGC TCTCTTGCTGTCTCT VFMJ11_B0172 160117 - 158747 - | Sea24 TERM 121 159983 - 159957 - G 100 -14.4 -4.0942 | opp_overlap 159957, overlap 159958 GACTTATGAGACAAA CCGGCTGCGCCA TAT TGGCGTAGCCGA TTCATCAGACGTTGA TERM 122 159957 - 159983 + g 95 -14.4 -3.15579 | opp_overlap 159957 159958 GACTTATGAGACAAA CCGGCTGCGCCA TAT TGGCGTAGCCGA TTCATCAGACGTTGA TERM 123 159982 - 159958 - G 100 -15.7 -3.0517 | opp_overlap 159957, overlap 159957 ACTTATGAGACAAAC CGGCTGCGCCA TAT TGGCGTAGCCG ATTCATCAGACGTTG TERM 124 160336 - 160319 - g 81 -7 -4.77438 | opp_overlap 160319 AGGGAGTATGAAAAA GACCTC ATGAAA GAGGTC TTATGGATAGTTGAG VFMJ11_B0173 160244 - 160372 + | hypothetical protein VFMJ11_B0174 161985 - 160789 - | hypothetical protein VFMJ11_B0175 163457 - 162087 - | Sea24 TERM 125 163674 - 163726 + r 73 -9.4 -2.79878 | gap 1, opp_overlap 163674 163677, overlap 163673 TGTATTTACCATAAA GT-ATGTAATCATCACCAATCTAAC TAAC GTTTGATCGGTGATGATTACAACGC ATTTAGATAACTAAG TERM 126 163724 - 163674 - R 100 -17.3 -3.97947 | gap 1, opp_overlap 163674 163673, overlap 163677 TGTATTTACCATAAA GTATGTAATCATCACCAATCTAAC TAAC GTTTGATCGGTGATGATTACA-AC GCATTTAGATAACTA TERM 127 163722 - 163677 - R 100 -20.1 -3.0439 | opp_overlap 163674 163673, overlap 163674 ATTTACCATAAAGTA TGTAATCATCACCAATCTAAC TAAC GTTTGATCGGTGATGATTACA ACGCATTTAGATAAC VFMJ11_B0176 164600 - 163764 - | hypothetical protein VFMJ11_B0177 166545 - 164587 - | hypothetical protein TERM 128 164647 - 164659 + g 74 -4.1 -5.04356 | opp_overlap 164642, overlap 164648 AACATTCAAACTTAG TGGTA AGT TACCG TTTTTCATTATTTCG TERM 129 166233 - 166251 + g 79 -3.2 -5.52384 | TAAAAGTTACAAGTG TATCAGGA CTA TTTTGATA TTTTTTTGATAGGAA TERM 130 166458 - 166448 - G 70 -5.4 -4.42653 | opp_overlap 166448, overlap 166452 166455 ATTTCATTCAGAAAA GGAA TAA TTCC GTTATCGAAATTATT TERM 131 166812 - 166825 + H 73 -3.8 -5.0809 | TTTGGTACTTTTATG GTCG AAAAGC CGAC TTTTTATGCTTTATT VFMJ11_B0178 167260 - 167544 + | hypothetical protein VFMJ11_B0179 167559 - 168347 + | hypothetical protein VFMJ11_B0180 168344 - 168643 + | hypothetical protein VFMJ11_B0181 168901 - 168731 - | hypothetical protein VFMJ11_B0182 169166 - 168906 - | hypothetical protein TERM 132 169081 - 169092 + g 86 -4.4 -5.52096 | opp_overlap 169081 GGATATTGCATAATA TCTG ACCA CAGA TTTTTTCTTGGCTTT VFMJ11_B0183 169790 - 170119 + | hypothetical protein VFMJ11_B0184 170123 - 170287 + | hypothetical protein VFMJ11_B0185 170259 - 170417 + | hypothetical protein VFMJ11_B0186 170436 - 170555 + | hypothetical protein TERM 133 170781 - 170798 + G 87 -8.5 -4.59342 | opp_overlap 170765 170759 CAAACAGCTCGACTT GGTGTTT GGTT AAACACC TTTATTTGTAATAAC VFMJ11_B0187 170583 - 171095 + | hypothetical protein VFMJ11_B0188 171264 - 171566 + | hypothetical protein TERM 134 172274 - 172290 + G 70 -5.9 -4.42653 | TTGTCTTATAACTTT TCAGAAG AAG CTTTTGA TTTTATCAATGAGGT VFMJ11_B0189 171665 - 172375 + | hypothetical protein TERM 135 172415 - 172436 + T 89 -8.7 -4.5442 | opp_overlap 172410 172415 GAAAAATGAAGATAA GGGGAGTTA AATC TAACGCCCC TTTTGTAATTAAAGC TERM 136 172436 - 172415 - T 79 -8.7 -3.85785 | opp_overlap 172415, overlap 172410 GAAAAATGAAGATAA GGGGAGTTA AATC TAACGCCCC TTTTGTAATTAAAGC VFMJ11_B0190 175126 - 172454 - | ATPase involved in DNA repair TERM 137 172599 - 172623 + g 71 -6.5 -4.16842 | overlap 172614 TGGTACGTAAGAGTC TCGTTATCGTT TTT AGCGATGATGA TTTGTTCAGCATCAC TERM 138 174520 - 174507 - G 73 -2.3 -5.18357 | GAATTTAGGAAAAAA GTTCG GTCA CGATC TGTGGATCCAAAAAT TERM 139 175079 - 175102 + g 72 -3.1 -5.03314 | ATTTAAATGAGTCAT TGGGGTATG GATATG CAAATCCCA TTTTTTCCACGTCGA VFMJ11_B0191 175308 - 175670 + | hypothetical protein VFMJ11_B0193 175779 - 176750 + | phage integrase, putative VFMJ11_B0192 177010 - 176747 - | hypothetical protein VFMJ11_B0194 177849 - 177118 - | hypothetical protein TERM 140 177993 - 178023 + r 88 -7 -5.11836 | opp_overlap 177998, overlap 177998 AATGCCGATCAAATA AAAAAGGTGAGT CATATCA ACTCACCTTTTG TTTTATTTTAGCTCT TERM 141 178018 - 177998 - R 93 -8.3 -5.68438 | opp_overlap 177993 177998 CGATCAAATAAAAAA GGTGAGTCA TAT CAACTCACC TTTTGTTTTATTTTA TERM 142 177998 - 178018 + r 93 -6.9 -5.40279 | opp_overlap 177998, overlap 177993 CGATCAAATAAAAAA GGTGAGT CATATCA ACTCACC TTTTGTTTTATTTTA TERM 143 178034 - 178051 + r 72 -2.6 -5.34555 | opp_overlap 178048 178049 TTTTGTTTTATTTTA GCTCTG AATTAA CAGTGC TTTTTTCTGATATAA VFMJ11_B0195 179259 - 178042 - | gammaproteobacterial enzyme C- transmembrane domain protein SEQUENCE gi|197336667|ref|NC_011186.1| Vibrio fischeri MJ11 chromosome II, complete sequence (length 1418848) VFMJ11_A0001 1073 - 3058 + | RctB TERM 1 3222 - 3243 + F 100 -9.4 -5.71712 | overlap 3223 TTTAAATAATTGTAT TGGCGAGC CTCAGA GCTCGCCG TTTTTTTATCTGCAA TERM 2 3223 - 3242 + F 93 -10.7 -4.01943 | overlap 3222 TTAAATAATTGTATT GGCGAGC CTCAGA GCTCGCC GTTTTTTTATCTGCA VFMJ11_A0002 3408 - 3755 + | translation initiation inhibitor TERM 3 3763 - 3796 + F 83 -6.1 -5.14965 | opp_overlap 3766, overlap 3764 3766 AAAAGTAATATAAAT TAAGTGATTACCAAT TTTT ATTGGTGATCACTGC TTTTTTAATCAAACT TERM 4 3764 - 3795 + F 82 -9.6 -3.68256 | opp_overlap 3766, overlap 3763 3766 AAAGTAATATAAATT AAGTGATTACCAAT TTTT ATTGGTGATCACTG CTTTTTTAATCAAAC TERM 5 3766 - 3793 + F 90 -12.2 -3.41701 | opp_overlap 3766, overlap 3764 3763 AGTAATATAAATTAA GTGATTACCAAT TTTT ATTGGTGATCAC TGCTTTTTTAATCAA TERM 6 3793 - 3766 - f 82 -10 -3.69943 | opp_overlap 3766 3764 3763 AGTAATATAAATTAA GTGATTACCAAT TTTT ATTGGTGATCAC TGCTTTTTTAATCAA TERM 7 4881 - 4869 - g 100 -4.9 -5.95946 | TTAATAAGAAAAAAA TAAAC ACT GTTTA TGGTGAGATCATTAG VFMJ11_A0003 4556 - 5323 + | putative DNA-binding Protein -- AraC type helix turn helix TERM 8 5378 - 5325 - T 100 -16.6 -3.86822 | gap 1, opp_overlap 5339, overlap 5339 TAAGGGCCTCATAAA TAAACAATAAAAAAGCCTAAGTCTA GTTTT TAGACTTAGGCTTTTTTATTGTA-A TGAGTTTAGGTTTAT TERM 9 5365 - 5339 - T 100 -13.9 -5.74288 | opp_overlap 5339, overlap 5325 ATAAACAATAAAAAA GCCTAAGTCTA GTTTT TAGACTTAGGC TTTTTTATTGTAATG TERM 10 5339 - 5365 + T 100 -14.6 -5.58179 | opp_overlap 5339 5325 ATAAACAATAAAAAA GCCTAAGTCTAG TTT TTAGACTTAGGC TTTTTTATTGTAATG VFMJ11_A0004 6937 - 5390 - | methyl-accepting chemotaxis protein TERM 11 5427 - 5455 + g 75 -10.4 -3.14463 | overlap 5415 TCTTCTTTTTGTGAT GCAGCTAAAGAG GAAAG TTCTTTGGCTGC TTGATCAACAAGATT TERM 12 6668 - 6698 + g 83 -3.5 -5.67529 | overlap 6673 TTTGTTATCATCGTG TATCATAAATGAA CGTAC TTCATTTATTGTA TTTTTATTTTTAGTT VFMJ11_A0005 7274 - 7053 - | hypothetical protein VFMJ11_A0006 7456 - 7809 + | hypothetical protein TERM 13 7821 - 7866 + T 93 -13.5 -3.19463 | gap 1, opp_overlap 7817 7818, overlap 7825 ATAATATTAAATTGT GCTGCGATTCACGTGGGTTTAT TCT ATAAACCCACGTGAA-CGTCGA TTACTCAATAATACC TERM 14 7825 - 7862 + T 100 -19.5 -2.57244 | gap 1, opp_overlap 7817 7818, overlap 7821 TATTAAATTGTGCTG CGATTCACGTGGGTTTAT TCT ATAAACCCACGTGAA-CG TCGATTACTCAATAA sodC_2 8394 - 7867 - | copper/zinc superoxide dismutase VFMJ11_A0008 8597 - 8406 - | hypothetical protein TERM 15 8508 - 8528 + g 85 -11.3 -3.2789 | opp_overlap 8507 8508, overlap 8504 ATTACTGTTCACAAC CGCATTAAA GAG TTTAATGCG TATGTTTGAAATTCT TERM 16 8528 - 8508 - G 79 -11.3 -2.5805 | opp_overlap 8508 8504, overlap 8507 ATTACTGTTCACAAC CGCATTAAA GAG TTTAATGCG TATGTTTGAAATTCT TERM 17 9190 - 9160 - g 70 -8.4 -3.27498 | opp_overlap 9162 GATATCGGATATCAA TATTCTGATACGCT TGA AGCGCGTCAAAATA ATATAGAGTTGACAC TERM 18 9797 - 9778 - g 73 -5.7 -4.57569 | opp_overlap 9778 CGATTGTCGCAAAAA CGAGCAA ATAGTG TCGCTCG CTTTTTTACTGATCG VFMJ11_A0009 8935 - 9960 + | OmpA/MotB domain protein TERM 19 12768 - 12730 - g 72 -8.3 -3.54029 | CCTCATTAACGATAA CTTCTGCTGTTATTCGT GCTTT ACAAATAACACCAGCAG TACAAAGTATCCCTA TERM 20 14109 - 14131 + G 79 -10.6 -3.15078 | overlap 14107 14122 GATATGAATTTAGTT GTTGGTGAGC AAA GCTCGCTAAC TGTTAGTGGGATGTA VFMJ11_A0010 9957 - 14321 + | Ig domain protein, group 2 domain protein TERM 21 14368 - 14340 - f 80 -10.4 -3.09202 | opp_overlap 14345, overlap 14345 ATAGATATTTCAATA GAAAAGCCGCAT TTTAT ATGCGGCTTTTT TTATAGAATATTTCT TERM 22 14363 - 14345 - f 100 -10.3 -4.67608 | opp_overlap 14345, overlap 14340 TATTTCAATAGAAAA GCCGCAT TTTAT ATGCGGC TTTTTTTATAGAATA TERM 23 14345 - 14363 + F 100 -10.3 -5.626 | opp_overlap 14345 14340 TATTTCAATAGAAAA GCCGCAT TTTAT ATGCGGC TTTTTTTATAGAATA VFMJ11_A0011 14595 - 18179 + | Ig domain protein, group 2 domain protein TERM 24 18188 - 18215 + T 75 -4.9 -4.84311 | opp_overlap 18194, overlap 18194 GAGATAGATTATTTA TATAAAGCCGT GTTATA GCGGCTTTTTA TTTTATTATGTGAAG TERM 25 18194 - 18209 + T 84 -3.9 -5.64321 | opp_overlap 18194, overlap 18188 GATTATTTATATAAA GCCGT GTTATA GCGGC TTTTTATTTTATTAT TERM 26 18242 - 18279 + T 73 -4.3 -4.89966 | opp_overlap 18244 18245 18247, overlap 18244 18245 18252 GAAGATAAATCTATA AAGCATAATATCTGATT TTAA AATCAGATATTACGATG TTTATTTTTCGCTCT TERM 27 18277 - 18244 - T 85 -9.1 -4.04922 | opp_overlap 18242 18244 18245 18252, overlap 18245 18247 AGATAAATCTATAAA GCATAATATCTGATT TTAA AATCAGATATTACGA TGTTTATTTTTCGCT TERM 28 18244 - 18277 + T 73 -6.9 -4.05491 | opp_overlap 18244 18245 18247, overlap 18242 18245 18252 AGATAAATCTATAAA GCATAATATCTGATT TTAA AATCAGATATTACGA TGTTTATTTTTCGCT TERM 29 18276 - 18245 - T 87 -12.6 -3.01869 | opp_overlap 18244 18242 18245 18252, overlap 18244 18247 GATAAATCTATAAAG CATAATATCTGATT TTAA AATCAGATATTACG ATGTTTATTTTTCGC TERM 30 18245 - 18276 + T 80 -10.4 -3.01668 | opp_overlap 18245 18244 18247, overlap 18244 18242 18252 GATAAATCTATAAAG CATAATATCTGATT TTAA AATCAGATATTACG ATGTTTATTTTTCGC TERM 31 18274 - 18247 - T 84 -11.6 -3.05274 | opp_overlap 18245 18244 18242 18252, overlap 18245 18244 TAAATCTATAAAGCA TAATATCTGATT TTAA AATCAGATATTA CGATGTTTATTTTTC VFMJ11_A0012 20290 - 18281 - | LysM domain protein TERM 32 19439 - 19452 + g 83 -5.3 -5.35459 | GTATGTAGTAATACC TTGCA TCTC TGCAA TTTTTTCTAATGTGT TERM 33 19522 - 19532 + g 78 -4 -5.22943 | opp_overlap 19529, overlap 19529 TCACTTCTCTAGTTA TGAA TGA TTCA TTTTTTGAATTTGCT TERM 34 20244 - 20272 + g 79 -3.2 -5.44119 | GTTAAGAAGCTATCT TTTATTGGCGCA TAATT TGCTCTAATGAA TTTTTTTGGGGTAAA VFMJ11_A0013 21254 - 20316 - | hypothetical protein TERM 35 20842 - 20854 + g 71 -4.9 -4.63586 | overlap 20850 AATTCTTGTACGGCA TTATC ATC GATAA TTTTATCTATAATGT TERM 36 20861 - 20878 + g 81 -2.8 -5.55001 | CATCGATAATTTTAT CTATAA TGTCCT TTATAG TTTTCTTTTTTGTTA TERM 37 21415 - 21383 - R 77 -4.9 -5.0538 | opp_overlap 21378 21383 21385 21408 21410, overlap 21385 CTGTACTTTAAAAAA TGCCACTACCACC GTTATTA AGTGGTAGTGAAA TTTTATTTAACTAAT VFMJ11_A0014 21777 - 21418 - | protein YgiW VFMJ11_A0015 22847 - 21786 - | diguanylate cyclase/phosphodiesterase domain 2 TERM 38 22470 - 22481 + g 89 -4.4 -5.63103 | TGGAGTGATTTGTTT GTTC TCCA GAAC TTTTTTTAATTCGCC TERM 39 22890 - 22902 + H 71 -5.5 -4.46112 | overlap 22886 22895 CGGATTTTTATCAAT GGTCA TTA TGGCC TTTGTTTAACTAACG TERM 40 22895 - 22927 + H 100 -14.4 -3.72027 | overlap 22890 22886 TTTTATCAATGGTCA TTATGGCCTTTGTT TAACT AACGAAGGCCATAA TTATTCCTACGGGAT TERM 41 23701 - 23738 + G 77 -9.9 -3.45023 | TTAATGAACACTATT TCTGGAACAGATTCTCC GACT GGTGTGTTTGTTCCAGA TTATACTAGTCCTGA VFMJ11_A0016 23242 - 24783 + | lipoprotein, putative VFMJ11_A0017 24962 - 24792 - | hypothetical protein TERM 42 25084 - 25116 + r 81 -9.3 -3.82946 | opp_overlap 25089, overlap 25089 GAATTTTTATCCAAA AAAAACAGCCACT ATTATCG AGTGGCTGTTTTA TTATATTTACGATAA TERM 43 25111 - 25089 - R 100 -9.2 -5.81412 | opp_overlap 25084 25089 TTTATCCAAAAAAAA CAGCCACT ATTATCG AGTGGCTG TTTTATTATATTTAC TERM 44 25089 - 25111 + r 100 -9.2 -4.95302 | opp_overlap 25089, overlap 25084 TTTATCCAAAAAAAA CAGCCACT ATTATCG AGTGGCTG TTTTATTATATTTAC VFMJ11_A0018 26247 - 25141 - | hypothetical protein TERM 45 25349 - 25363 + g 74 -6.4 -4.35518 | opp_overlap 25349 AACGCTTCTTTAATA CTCACA ACA TGTGGG TTTTCATCTGCAATT TERM 46 26228 - 26249 + g 82 -3.7 -5.44198 | overlap 26231 TGATTTACTAAACGT TCTTGATTC ACTT GAGTCATGA TTTTTCTTCTTTCTT VFMJ11_A0019 26473 - 27609 + | peptide methionine sulfoxide reductase MsrA/msrB TERM 47 27649 - 27674 + F 81 -7.7 -4.31688 | GCTTTATATCAAGGG GGGTTATAAAT TTTT ATTTGTAGCCC TTTTCAGTTAGTCTT VFMJ11_A0020 27768 - 28052 + | hypothetical protein TERM 48 28087 - 28114 + T 82 -5.4 -5.38054 | opp_overlap 28087 TTAATCGTAAGAAAA CCCCAGCTCATC AGTG GTTAAGCCGGGG TTTTTATTTATACAA TERM 49 28114 - 28087 - T 100 -9.8 -4.68103 | opp_overlap 28087 TTAATCGTAAGAAAA CCCCAGCTCATC AGTG GTTAAGCCGGGG TTTTTATTTATACAA gfa 28754 - 28143 - | S-(hydroxymethyl)glutathione synthase VFMJ11_A0022 29104 - 29976 + | phospholipase VFMJ11_A0023 30031 - 31479 + | catalase TERM 50 31497 - 31514 + F 93 -8.4 -5.39755 | opp_overlap 31497 AAAAAGTTAATATAA GGCGAC GAAAAA GTCGCC TTTTTTATGCTTATC TERM 51 31514 - 31497 - f 75 -8.4 -3.76383 | opp_overlap 31497 AAAAAGTTAATATAA GGCGAC GAAAAA GTCGCC TTTTTTATGCTTATC VFMJ11_A0024 31700 - 32239 + | hypothetical protein TERM 52 32251 - 32278 + F 100 -10 -4.37157 | gap 1 CTAGTTTGATTTTAT GAGCGGT-TATCA TTT TGGTATACCGCTC TTTATTATGATGGTT VFMJ11_A0025 32507 - 33685 + | chitin-binding protein TERM 53 33764 - 33732 - f 87 -12.3 -3.02263 | opp_overlap 33732 33737, overlap 33737 ATATGTTGTTTAATA TAAAAGCCCTAAA TTACTTG TTTAGGGCTTTTA TTATAAGTAATGCTT TERM 54 33732 - 33764 + F 93 -13 -3.3854 | opp_overlap 33732 33737, overlap 33737 ATATGTTGTTTAATA TAAAAGCCCTAAAT TACTT GTTTAGGGCTTTTA TTATAAGTAATGCTT TERM 55 33759 - 33737 - f 83 -7.8 -4.66537 | opp_overlap 33732 33737, overlap 33732 TTGTTTAATATAAAA GCCCTAAA TTACTTG TTTAGGGC TTTTATTATAAGTAA TERM 56 33737 - 33759 + F 93 -8.5 -4.79352 | opp_overlap 33737 33732, overlap 33732 TTGTTTAATATAAAA GCCCTAAAT TACTT GTTTAGGGC TTTTATTATAAGTAA TERM 57 33932 - 33916 - g 75 -2.9 -5.33785 | AATTAGTACAAAAAA CACTTCT AGC AGCAGCG CTTTTATCTTCAACC VFMJ11_A0026 33897 - 34436 + | hypothetical protein TERM 58 34484 - 34503 + F 93 -7.8 -5.56673 | opp_overlap 34484 ATGTTTATTCTTAAA GCTCTGGA TTTT TCCGGGGC TTTTTTATTGTGCAT VFMJ11_A0027 34687 - 36273 + | ABC transporter ATP-binding protein TERM 59 36328 - 36305 - f 100 -11 -4.62302 | opp_overlap 36305 TAAGATCTTTAAAAA CGCGAGTTTG ATTA CCAACTCGCG TTTTTTTATTTTGTT TERM 60 36305 - 36328 + F 100 -11 -6.17669 | opp_overlap 36305 TAAGATCTTTAAAAA CGCGAGTTTG ATTA CCAACTCGCG TTTTTTTATTTTGTT VFMJ11_A0028 36360 - 36998 + | DNA polymerase III epsilon subunit VFMJ11_A0029 38510 - 37044 - | lipoprotein, putative VFMJ11_A0030 38800 - 38675 - | hypothetical protein rsgA_2 39035 - 40096 + | ribosome small subunit-dependent GTPase A TERM 61 40146 - 40128 - f 95 -8.8 -5.4833 | opp_overlap 40128 40143 TGAGCTAATAAAAAA CCGCCCAT CTG ATTGGCGG TTTTTTTATAACCGC TERM 62 40128 - 40146 + F 95 -8.8 -5.60993 | opp_overlap 40128, overlap 40143 TGAGCTAATAAAAAA CCGCCCAT CTG ATTGGCGG TTTTTTTATAACCGC TERM 63 40143 - 40161 + F 88 -7.4 -4.87318 | opp_overlap 40128, overlap 40128 CCGCCCATCTGATTG GCGGTTTT TTT ATAACCGC TTTTTAGCTTTTGGA VFMJ11_A0032 40284 - 40700 + | lipoprotein, putative TERM 64 41300 - 41318 + G 71 -3.8 -4.93365 | opp_overlap 41293 ACCAAGATCAATTAT CGTTAACT GTG GGTTATCG TTTTTAATTATCGAA VFMJ11_A0033 40783 - 41325 + | hypothetical protein TERM 65 41384 - 41347 - f 100 -13 -4.22041 | opp_overlap 41352, overlap 41352 AAAGTCGAATATAAA TAAAACCGCCTTTATT ATTTTG AATAAAGGCGGTTTTT TGCTATCTGGCTATA TERM 66 41379 - 41352 - f 100 -12.9 -5.10033 | opp_overlap 41352, overlap 41347 CGAATATAAATAAAA CCGCCTTTATT ATTTTG AATAAAGGCGG TTTTTTGCTATCTGG TERM 67 41352 - 41379 + F 100 -12.9 -5.24989 | opp_overlap 41347 41352 CGAATATAAATAAAA CCGCCTTTATT ATTTTG AATAAAGGCGG TTTTTTGCTATCTGG VFMJ11_A0034 41541 - 42176 + | GntR domain protein TERM 68 42188 - 42207 + F 87 -6.5 -5.50499 | opp_overlap 42190 TTAATCAATTTTAGA CAGTGAT CACGGT ATCACTG TTTTTTTACCTCTAG TERM 69 42227 - 42239 + F 71 -6.3 -4.18443 | TTTACCTCTAGTATT CTTGT CAT ACAAG TTGTTATTGTTTGTC VFMJ11_A0035 42270 - 43175 + | 2-keto-3-deoxy-galactonokinase TERM 70 43550 - 43563 + G 73 -2.4 -5.1861 | CATTATCTTGTGGTG CTTC TGCATT GAAG TTTTTTCCTGCTGAA TERM 71 43618 - 43603 - g 70 -3.2 -4.89562 | GCAAAAGGAATAAAA GCAATG AAGT CAGTGC TGCCAGAAGGAACGG VFMJ11_A0036 43168 - 43809 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase VFMJ11_A0037 43842 - 44834 + | C4-dicarboxylate-binding periplasmic protein TERM 72 44870 - 44846 - f 75 -8.6 -3.4926 | opp_overlap 44843, overlap 44844 ATAAACATGGAAATA GAGCTCCTTT TCTCT ATAGGAGCTC TGACTGTTTTAGGTT VFMJ11_A0038 44892 - 45398 + | trap-type c4-dicarboxylate transport system, small permease component VFMJ11_A0039 45398 - 46678 + | trap-type c4-dicarboxylate transport system, large permease component VFMJ11_A0040 46690 - 47838 + | galactonate dehydratase VFMJ11_A0041 47841 - 49532 + | dehydratase family protein VFMJ11_A0042 49529 - 50434 + | dihydrodipicolinate synthetase TERM 73 50442 - 50469 + F 100 -10 -5.18866 | opp_overlap 50436 50444 ATAAATAATGTTACA TAGCCTTTATCT AGAC AGTTAAAGGCTA TTTTATTTGTTTCAG VFMJ11_A0043 50613 - 50864 + | hypothetical protein VFMJ11_A0044 51073 - 50921 - | hypothetical protein VFMJ11_A0045 51454 - 51224 - | hypothetical protein TERM 74 51783 - 51772 - g 76 -4.4 -5.1485 | TAAGGAATAGAAAAA TGGT CACC ACCA CTCCAACGCGTTTTA TERM 75 51845 - 51858 + G 71 -5.3 -4.57073 | TTATTGGACACTTAG TGGTT CTAC AACCA TTTTTGAAGAAGCTG VFMJ11_A0046 51771 - 51956 + | hypothetical protein TERM 76 51988 - 52024 + F 100 -14.7 -3.78022 | opp_overlap 51994, overlap 51994 TTTGTAGTGCATGAG TATAAAGGACAACGTTA ATT TAGCGTTGTCCTTTTTA TTTAATAACTATAAA TERM 77 52018 - 51994 - f 93 -11.5 -3.99324 | opp_overlap 51988 51994 GTGCATGAGTATAAA GGACAACGTTA ATT TAGCGTTGTCC TTTTTATTTAATAAC TERM 78 51994 - 52018 + F 100 -13.7 -5.33405 | opp_overlap 51994, overlap 51988 GTGCATGAGTATAAA GGACAACGTTA ATT TAGCGTTGTCC TTTTTATTTAATAAC TERM 79 52258 - 52236 - f 85 -6.3 -5.24449 | opp_overlap 52238, overlap 52238 TATAAAGGCAAAAAA TACACCTAC AAAAA GTAGGTGTT AATAATGTCATTATA TERM 80 52238 - 52256 + F 73 -8.9 -3.26433 | opp_overlap 52238 52236 TAAAGGCAAAAAATA CACCTAC AAAAA GTAGGTG TTAATAATGTCATTA TERM 81 52256 - 52238 - f 85 -8.9 -4.23298 | opp_overlap 52238, overlap 52236 TAAAGGCAAAAAATA CACCTAC AAAAA GTAGGTG TTAATAATGTCATTA TERM 82 52477 - 52489 + G 72 -3.3 -5.02074 | TTGGCCCTGTATTCT CTGCC GTT GGTGG TTTTTTAGCCGATAA VFMJ11_A0047 52290 - 53807 + | di-/tripeptide transporter TERM 83 53823 - 53852 + T 83 -11.7 -2.82471 | gap 1, opp_overlap 53831, overlap 53831 AGCTTAATATTTTTG TAATAAAAGGGCGA ATT TCGCCCTTTT-TTA GTTATTAAGGTTTCT TERM 84 53831 - 53845 + T 100 -11.4 -5.37865 | opp_overlap 53831, overlap 53823 ATTTTTGTAATAAAA GGGCGA ATT TCGCCC TTTTTTAGTTATTAA TERM 85 53845 - 53831 - T 100 -11.4 -4.63486 | opp_overlap 53831 53823 ATTTTTGTAATAAAA GGGCGA ATT TCGCCC TTTTTTAGTTATTAA VFMJ11_A0048 54275 - 53850 - | transcriptional regulator, MarR family TERM 86 54555 - 54541 - g 78 -2.8 -5.41359 | overlap 54542 AATTAAAGCAAAAAA GTGGTT TAG AACCAG AAACAGCAACAAAGG VFMJ11_A0049 54396 - 54698 + | hypothetical protein TERM 87 54735 - 54770 + T 73 -7.7 -3.84246 | opp_overlap 54743 TTGAGTGATAGGTAT CCATATTAGCTACGC GATATA GCATAACTAATATGG TTTAGTCGTTAGAGG VFMJ11_A0050 56048 - 54810 - | NADH oxidase VFMJ11_A0052 56219 - 57127 + | transporter, drug/metabolite exporter family VFMJ11_A0051 57983 - 57105 - | transcriptional regulator, LysR family VFMJ11_A0053 58083 - 58445 + | hypothetical protein TERM 88 58475 - 58455 - T 100 -14.7 -3.5944 | opp_overlap 58449 58455 ATTTAGAGGGGGAAA CGGTGCGAC ACT GCCGCACCG TTTGAGTTATTTAAT TERM 89 58455 - 58475 + T 100 -12.5 -3.90038 | opp_overlap 58455, overlap 58449 ATTTAGAGGGGGAAA CGGTGCGAC ACT GCCGCACCG TTTGAGTTATTTAAT VFMJ11_A0054 59135 - 58500 - | chloramphenicol acetyltransferase TERM 90 59359 - 59330 - R 100 -11.6 -5.93252 | GGCAAAAACAAAAAA GGCATTAGCAAA TTTAAC TCTGCTAATGCC TAGAACTTGTATATT TERM 91 59377 - 59389 + r 71 -7.7 -3.63515 | GAACTTGTATATTGA GCGTT ATT AACGC TTATTCAACGTCACA VFMJ11_A0055 59764 - 59390 - | hypothetical protein TERM 92 59993 - 59963 - H 81 -9.9 -3.3862 | opp_overlap 59953, overlap 59955 59953 ATAAATACGCCATAA TTGTGACACTTTC ATCCA GAAATTGTCACAA TTAAAAGGGTATCTG VFMJ11_A0056 60011 - 61366 + | filamentation induced by cAMP protein Fic VFMJ11_A0057 62316 - 61423 - | transcriptional regulator, LysR family TERM 93 64155 - 64145 - g 77 -8.2 -4.30978 | TTGAACGCACCAAAA GCGG AAG CCGC AGGTCTTGACTTCAA VFMJ11_A0058 62432 - 64453 + | alkyl sulfatase TERM 94 64516 - 64492 - T 79 -10.1 -3.17075 | opp_overlap 64492 TTGTGGGTAATGTAA TGCCAGTCA GTTAAGT TGACTGGCA TTTTTTTAGTTCGAT TERM 95 64492 - 64516 + T 100 -11.5 -5.64006 | opp_overlap 64492 TTGTGGGTAATGTAA TGCCAGTCAGT TAA GTTGACTGGCA TTTTTTTAGTTCGAT VFMJ11_A0059 65789 - 64584 - | sugar efflux transporter A TERM 96 65473 - 65455 - G 73 -6.6 -4.28018 | overlap 65458 AACAGTTGACCAAAA GAAGCGCC ACT GACGCTAC CAAAGACCACGGCCA TERM 97 65470 - 65458 - G 73 -6.9 -4.25658 | overlap 65455 AGTTGACCAAAAGAA GCGCC ACT GACGC TACCAAAGACCACGG VFMJ11_A0060 65995 - 66882 + | transcriptional regulator, AraC family TERM 98 66985 - 66969 - T 89 -7.2 -5.36965 | opp_overlap 66969 TAAGATCATAAAAAA GGCCGC AAATA GCGACC TTTAAATAGACAGAG VFMJ11_A0061 67843 - 67007 - | hypothetical protein VFMJ11_A0062 68100 - 68939 + | transcriptional regulator, LysR family VFMJ11_A0063 70552 - 69212 - | regulatory protein UhpC VFMJ11_A0064 70683 - 70561 - | sensor protein UhpB VFMJ11_A0065 72005 - 70683 - | sensor protein UhpB VFMJ11_A0066 72652 - 72044 - | transcriptional regulatory protein UhpA TERM 99 72762 - 72797 + r 80 -10.5 -3.14422 | overlap 72756 AGCGCTATTGGTATG ATCTCGCGCGCTTTA GCTAAG TAAAGCGCGCGAAAG TATTACGCTTGTTTT TERM 100 72812 - 72825 + r 74 -2.4 -5.44119 | GTATTACGCTTGTTT TGCA GCTAGG TGCA TTTTTTTAGCGTGAC VFMJ11_A0067 74194 - 72800 - | hexose phosphate transport protein TERM 101 73028 - 73048 + g 70 -3.2 -5.00616 | overlap 73029 GAAAGTACCTTTCAC ACCATCGG CAACA CTGATGGC TTTTTTAGGAACAAA TERM 102 73877 - 73863 - G 71 -6.4 -4.29176 | overlap 73856 73864 ATACTGAAGCTAAAA CCTAGC ATC GCTAGA CCAGACAGAATAAGC TERM 103 74336 - 74320 - R 81 -9.5 -3.79113 | opp_overlap 74317 AGGGTCTTAGAATAA CTAGGAA AAA TTCCTAG AAATTGATGAGGGAT VFMJ11_A0068 75233 - 74490 - | transcriptional regulator, TetR family VFMJ11_A0069 75455 - 76528 + | acriflavin resistance periplasmic protein VFMJ11_A0070 76528 - 77589 + | membrane-fusion protein VFMJ11_A0071 77589 - 80651 + | acriflavin resistance protein TERM 104 80684 - 80718 + F 100 -9.5 -6.23317 | opp_overlap 80688 GTGATTTTTATCTCA CCAACCACAATAG CTAACGCGT TTATTGTGGTTGG TTTTTTTATTTTTAT VFMJ11_A0072 80841 - 81257 + | hypothetical cytosolic protein TERM 105 81303 - 81336 + T 100 -9.8 -4.74989 | opp_overlap 81308, overlap 81308 AGTTTGACCACAATA AAAAAGCCAAGTAA TTTGAT TTACTTGGCTTTTG TTTTATCTGTTCTTT TERM 106 81331 - 81308 - T 100 -9.7 -5.58179 | opp_overlap 81303 81308 GACCACAATAAAAAA GCCAAGTAA TTTGAT TTACTTGGC TTTTGTTTTATCTGT TERM 107 81308 - 81331 + T 100 -9.7 -5.24647 | opp_overlap 81308, overlap 81303 GACCACAATAAAAAA GCCAAGTAA TTTGAT TTACTTGGC TTTTGTTTTATCTGT VFMJ11_A0073 82983 - 81358 - | toxin corregulated pilus biosynthesis protein I TERM 108 82037 - 82047 + g 70 -5.4 -4.371 | GCTTGAACAGCATTA GAAG AAA CTTC TTTTGATGTGCTCGA VFMJ11_A0074 84190 - 83471 - | clavaldehyde dehydrogenase TERM 109 84006 - 84019 + g 73 -6.7 -4.21811 | opp_overlap 84003 CCCTGAGCAATAGCC GCTTC AAAA GAAGC TTTGTCTGTTACATC VFMJ11_A0075 84353 - 85255 + | transcriptional regulator, LysR family VFMJ11_A0076 85461 - 85333 - | hypothetical protein VFMJ11_A0077 86426 - 85611 - | hypothetical protein TERM 110 87513 - 87538 + G 76 -6.9 -4.44667 | GTTTTGTGGTAAGGC CGTTGCTATTG AGCA TAATGGCGACG TTTATTCTTGCGACC VFMJ11_A0078 86572 - 87843 + | chondroitin sulfate/heparin utilization regulation protein TERM 111 88767 - 88754 - g 85 -3.8 -5.60993 | CGCGTCAGAAAAAAA TGGG CATCAT CCCA CAAGACACTAAACTT VFMJ11_A0079 87946 - 90237 + | sulfatase TERM 112 90279 - 90240 - T 80 -9.4 -3.55603 | gap 1, overlap 90238 90242 90245 90249 AATTGTTAAATAATA GACGAGCAATGCCAACTCA TCG TGAGTTGGCATTACAGG-C AACAACACCATGAAA TERM 113 90278 - 90242 - T 93 -13.1 -3.34652 | overlap 90240 90238 90245 90249 TTGTTAAATAATAGA CGAGCAATGCCAACTCA TCG TGAGTTGGCATTACAGG CAACAACACCATGAA TERM 114 90275 - 90245 - T 100 -17.8 -2.8341 | overlap 90242 90240 90238 90249 TTAAATAATAGACGA GCAATGCCAACTCA TCG TGAGTTGGCATTAC AGGCAACAACACCAT TERM 115 90271 - 90249 - T 95 -15 -3.28405 | overlap 90245 90242 90240 90238 ATAATAGACGAGCAA TGCCAACTCA TCG TGAGTTGGCA TTACAGGCAACAACA VFMJ11_A0080 90547 - 90335 - | hypothetical protein VFMJ11_A0081 91090 - 90560 - | hypothetical protein TERM 116 91155 - 91173 + H 76 -4.6 -5.0809 | opp_overlap 91139 91146, overlap 91139 91156 91167 AAATAACAATAATTA TTTATCGT TTT GCGATAAG TTTTTATCGTTTATT TERM 117 91167 - 91182 + H 72 -6.2 -4.34737 | overlap 91156 91155 TTATTTATCGTTTTG CGATAA GTTT TTATCG TTTATTGCTTCGTGA TERM 118 92320 - 92298 - g 70 -3.4 -4.87133 | overlap 92299 AGGTTTTAAAGAAAA CGGCTCAATT GTT AACTGAGACA GTGAGAAGTCGCGAT TERM 119 92606 - 92575 - g 88 -3.8 -5.86332 | gap 1, overlap 92579 TGAAGCTAAAAAAAA TAAAGGC-AACTCAT ATA AAGAGTTTGCCCCTA TGATGCTTAAACGAG TERM 120 92602 - 92579 - g 80 -4.6 -5.33985 | gap 1, overlap 92575 GCTAAAAAAAATAAA GGC-AACTCAT ATA AAGAGTTTGCC CCTATGATGCTTAAA VFMJ11_A0083 91331 - 92632 + | diguanylate cyclase VFMJ11_A0082 94604 - 92613 - | sensor protein TERM 121 93235 - 93263 + g 81 -7.5 -4.63218 | opp_overlap 93238, overlap 93238 TTAATGGTTAGTAAA CAAGGTAACCAAT GTG ATTTGTTACCGTG TTTTCTTGAAAAAAA TERM 122 93260 - 93238 - G 75 -7.8 -4.0031 | opp_overlap 93235 93238 ATGGTTAGTAAACAA GGTAACCAAT GTG ATTTGTTACC GTGTTTTCTTGAAAA TERM 123 94102 - 94092 - G 71 -6.8 -4.08557 | GTGTGCAAAGAATAA CGCT AAA AGCG AGAAGATAACCGTAG VFMJ11_A0084 95182 - 94601 - | hypothetical protein VFMJ11_A0085 97368 - 95185 - | TonB-dependent outer membrane receptor VFMJ11_A0086 97927 - 98370 + | mannitol-specific cryptic phosphotransferase enzyme iia component VFMJ11_A0087 98384 - 99781 + | pts system mannitol-specific eiicba component VFMJ11_A0088 99832 - 101103 + | L-sorbose 1-phosphate reductase TERM 124 101148 - 101113 - f 89 -12 -3.18681 | opp_overlap 101109 101108 GTTTAATTCTATTAA CTTTATGTGGTAGCCT CTAG AGGTTACCACATACAG AGAGGTTTAAGCTTT VFMJ11_A0089 101162 - 101680 + | transcriptional regulator TERM 125 101924 - 101934 + G 70 -5.4 -4.4078 | CCTCTTCAGGTATTG CCAT TTG ATGG TTTTCATTACACCAA VFMJ11_A0090 101690 - 102424 + | hypothetical protein VFMJ11_A0091 102434 - 103180 + | putative hydrolase TERM 126 103239 - 103215 - T 100 -10.7 -4.87037 | opp_overlap 103215 AATAGACAGCAAAAA GCCGATGCTCA TGA CGAGTATCGGC TTTTTTATTCGTATT TERM 127 103215 - 103239 + T 100 -12.2 -5.54885 | opp_overlap 103215 AATAGACAGCAAAAA GCCGATGCTC ATGAC GAGTATCGGC TTTTTTATTCGTATT VFMJ11_A0092 104477 - 103269 - | oxalate/formate antiporter VFMJ11_A0093 105051 - 105824 + | hypothetical protein TERM 128 105874 - 105852 - T 100 -16.4 -3.68024 | opp_overlap 105852 GTTTTTAATAGATAA GCCATGGTAG CTA CTACCATGGC TTTTTATTTTATTTC TERM 129 105852 - 105874 + T 100 -16.4 -5.67711 | opp_overlap 105852 GTTTTTAATAGATAA GCCATGGTAG CTA CTACCATGGC TTTTTATTTTATTTC VFMJ11_A0094 106339 - 105878 - | lipoprotein, putative VFMJ11_A0095 106627 - 107160 + | heme NO binding, putative VFMJ11_A0096 107178 - 108905 + | sensor protein LuxQ TERM 130 108928 - 108909 - T 100 -10 -4.89339 | opp_overlap 108909 AAGTATGTATAAAAA GCCTCACA ATAT TGCGAGGC TTTGAATTATAAGAA TERM 131 108909 - 108928 + T 73 -7.8 -3.80625 | opp_overlap 108909 AAGTATGTATAAAAA GCCTCACA ATAT TGCGAGGC TTTGAATTATAAGAA VFMJ11_A0097 110446 - 108971 - | di-/tripeptide transporter TERM 132 109807 - 109797 - G 70 -5.4 -4.33854 | ATGAAGAAAACCAAA GCAA TCA TTGC TACTGATGTGATTAG TERM 133 110641 - 110685 + r 83 -6 -5.08824 | gap 1, opp_overlap 110641 110643 110645 110649 TAATGAGGCAGGGAA TAGATGA-ATCATTCAAAGTG GTTT CTTTTTGAACGATGTCATCTA TTTTTTAAATAAGAG VFMJ11_A0098 111631 - 110711 - | Zn-dependent enzyme from deacylase/carboxypeptidase superfamily VFMJ11_A0099 116057 - 111654 - | MshQ TERM 134 115487 - 115475 - G 72 -3.3 -5.03994 | TGTCATATATAAAAA GGCGA ACG TTGCC AGATATTTTTATTTC VFMJ11_A0100 116484 - 116050 - | MshP VFMJ11_A0101 117250 - 116456 - | MshO VFMJ11_A0102 117804 - 117250 - | MshD VFMJ11_A0103 118318 - 117794 - | prokaryotic N- methylation motif domain protein TERM 135 118119 - 118133 + g 73 -8.6 -3.78597 | TCGTTAATTAGCCAT CGGTTA CAG TAACCG TTTCGATTCATAGCT TERM 136 118305 - 118317 + g 75 -2.7 -5.26875 | GTAAATCCATCTATT TGATT ACG AGTCA TTTTTTCGTTACAAA TERM 137 118661 - 118635 - R 100 -10.3 -5.13473 | opp_overlap 118655 AGTAGATGTAAAAAA GGCAATAATGC ATGAA ACATTATTGCC TAAAAGTAGCCGATA dmsC 119535 - 118690 - | DMSO reductase anchor subunit dmsB 120151 - 119537 - | dimethylsulfoxide reductase, chain B VFMJ11_A0106 122600 - 120162 - | anaerobic dimethyl sulfoxide reductase chain a TERM 138 120534 - 120547 + g 74 -4.5 -5.00339 | overlap 120535 TCCGGTTAATTGAAG TGGGT AATT ACCCG TTTTTGATTCTTCAT TERM 139 121895 - 121920 + g 85 -8.5 -4.45485 | TTTCAGCAGGGTTAT TACCAAATTGA ACAA TTAATTTGGTA TTTTCTAAATCTGAT VFMJ11_A0107 122936 - 123520 + | anaerobic dimethyl sulfoxide reductase chain YnfI VFMJ11_A0108 123520 - 124077 + | ferredoxin-type protein NapF TERM 140 124092 - 124131 + T 70 -8.1 -3.28924 | opp_overlap 124102, overlap 124102 GTATGTATTTTAATG CATTAAAAAAGGTGACA ATTGAA TGTCACCTTTTTTATTA TTATGCGAGAAAATA TERM 141 124121 - 124102 - T 88 -7.9 -5.18357 | opp_overlap 124102 124092 TAATGCATTAAAAAA GGTGACA ATTGAA TGTCACC TTTTTTATTATTATG TERM 142 124102 - 124121 + T 93 -7.9 -5.68489 | opp_overlap 124102, overlap 124092 TAATGCATTAAAAAA GGTGACA ATTGAA TGTCACC TTTTTTATTATTATG VFMJ11_A0109 125250 - 124156 - | transporter TERM 143 125410 - 125385 - R 70 -4 -4.84311 | opp_overlap 125388, overlap 125388 TGTCACACAAGAAAA TAAGTAGGGC ATGATA ACCCTACTTT ATGTGTTTTATTTTG TERM 144 125407 - 125388 - R 71 -5.7 -4.51787 | opp_overlap 125388, overlap 125385 CACACAAGAAAATAA GTAGGGC ATGATA ACCCTAC TTTATGTGTTTTATT ggt 127172 - 125418 - | gamma-glutamyltransferase TERM 145 127284 - 127312 + r 87 -9.7 -4.02581 | opp_overlap 127282 127286, overlap 127286 CTCACATTTTAAACG AATTGAGAGTGAG TCA TTCACTCTCAATA TTATGTTTTATGAAG TERM 146 127310 - 127286 - R 90 -11.6 -3.53745 | opp_overlap 127284 127286, overlap 127282 CACATTTTAAACGAA TTGAGAGTGA GTCAT TCACTCTCAA TATTATGTTTTATGA TERM 147 127286 - 127310 + r 95 -12.3 -3.59658 | opp_overlap 127286 127282, overlap 127284 CACATTTTAAACGAA TTGAGAGTGAG TCA TTCACTCTCAA TATTATGTTTTATGA VFMJ11_A0111 128400 - 127333 - | outer membrane protein RomA TERM 148 127389 - 127403 + g 72 -10 -2.72839 | TGATCATGATTTTCT CCCCAA TAA TTGGGG TGATTAAACGTACTT TERM 149 128574 - 128523 - H 85 -9 -4.13995 | opp_overlap 128518 128532, overlap 128518 128524 TCCTCATAAAGTAAA CTACACCGACTAGTTTACATTTAA AAAG TGAAAAGTAAACTAGTTAGTGTAA AATGAATCGAAGTGG TERM 150 128573 - 128524 - H 80 -10.3 -3.07915 | opp_overlap 128518 128532, overlap 128518 128523 CCTCATAAAGTAAAC TACACCGACTAGTTTACATTTAA AAAG TGAAAAGTAAACTAGTTAGTGTA AAATGAATCGAAGTG TERM 151 128963 - 128975 + G 75 -5.5 -4.77173 | opp_overlap 128963 TAGACTTAGCGAAAG TGGCC TTT GGTCA TTTCTTTTATAAACC VFMJ11_A0112 128635 - 129249 + | transcriptional regulator TERM 152 129695 - 129685 - g 81 -5.4 -5.01497 | ATGATGATAGAAAAA GTCT AGA AGAC ACATCAGGTGAGCTT VFMJ11_A0113 129372 - 130361 + | hypothetical hydrolase/lipase TERM 153 130390 - 130359 - T 78 -10.3 -2.73508 | opp_overlap 130366, overlap 130366 CAAGAATCAAATCTA TAAAAAACCAGCC GATGGA GGCTGGTTTTTTT ACACTACGATAGTTA TERM 154 130366 - 130383 + T 93 -8.4 -5.44119 | opp_overlap 130359 130366 CAAATCTATAAAAAA CCAGCC GATGGA GGCTGG TTTTTTTACACTACG TERM 155 130383 - 130366 - T 90 -8.4 -5.33866 | opp_overlap 130366, overlap 130359 CAAATCTATAAAAAA CCAGCC GATGGA GGCTGG TTTTTTTACACTACG TERM 156 130392 - 130416 + T 78 -2.2 -5.58454 | gap 1, opp_overlap 130397, overlap 130395 AGGCTGGTTTTTTTA CACTACGATAG TTAT CTACCGTA-TG TTTTTTTAATATAAG VFMJ11_A0114 132250 - 130403 - | peptidase family M3 TERM 157 130541 - 130560 + g 75 -5.8 -4.7219 | gap 1 AGCGTCTGCTTGGGT TCG-AGAGT TTA ACTCTGCGA TTTTATCTTGCTCTA VFMJ11_A0115 133967 - 132411 - | aerotaxis receptor TERM 158 134152 - 134166 + H 78 -2.1 -5.64328 | TAATGCTTTAGTGGT CTTGT TTGAT GCAAG TTTTATTTTTTTGTT VFMJ11_A0116 134444 - 135814 + | guanine-hypoxanthine permease TERM 159 135846 - 135865 + T 100 -12.2 -5.64274 | opp_overlap 135846 ATTTAAAATTAAAAA CGGATGGT ATAA ACCATCCG TTTTTTTATGCGTGG TERM 160 135865 - 135846 - T 100 -12.2 -5.10154 | opp_overlap 135846 ATTTAAAATTAAAAA CGGATGGT ATAA ACCATCCG TTTTTTTATGCGTGG VFMJ11_A0117 136501 - 135893 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 161 136364 - 136350 - G 76 -7.2 -4.23615 | ACTAGAGCCAACAAA TATTGC TCT GCAATA AGAGCTGGGAAGGCT VFMJ11_A0118 137141 - 136494 - | ABC transporter ATP-binding protein TERM 162 136794 - 136812 + g 75 -8.2 -4.11623 | CTCTAATGCTTGCAT TGCTTGTA CCT TACGAGCA TTTCCTTTGATGGTA VFMJ11_A0119 138816 - 137155 - | ABC transporter permease protein TERM 163 138051 - 138030 - G 77 -5.1 -4.90136 | gap 1, opp_overlap 138048, overlap 138033 AAGCAATAGCAAAAA GCA-CAACCG CTC CGGCCGCTGC ACGAGGCAGTAAATT TERM 164 138495 - 138482 - G 80 -2.4 -5.63517 | GGTGCAAATAAAAAA GCAA AACCAA TTGC AAAGGCTACATGGGG VFMJ11_A0120 139979 - 138834 - | ABC transporter substrate-binding protein VFMJ11_A0121 140896 - 140219 - | transporter VFMJ11_A0122 141685 - 140912 - | glutamate synthase small chain VFMJ11_A0123 143478 - 141682 - | pyridine nucleotide-disulphide oxidoreductase domain protein VFMJ11_A0124 144491 - 143508 - | thiosulfate sulfurtransferase VFMJ11_A0125 144904 - 146601 + | two component system histidine kinase VFMJ11_A0126 146610 - 147227 + | transcriptional regulatory protein FixJ TERM 165 147740 - 147728 - g 70 -9.1 -3.14393 | overlap 147726 AGGAGAGATGGAAGA CAGCG TAT CGCTG TTAGGATTCTCTAGT VFMJ11_A0127 147321 - 147995 + | hypothetical protein VFMJ11_A0128 148076 - 149008 + | transcriptional regulator TERM 166 149050 - 149030 - Tf 100 -9.8 -5.27477 | opp_overlap 149030 AGTTCAATGAAAAAA GCCAATGA AATGA TCATTGGC TTTTTTATTAGAGTG TERM 167 149030 - 149050 + TF 100 -9.8 -5.46657 | opp_overlap 149030 AGTTCAATGAAAAAA GCCAATGA AATGA TCATTGGC TTTTTTATTAGAGTG TERM 168 149098 - 149112 + TF 88 -7.2 -5.12707 | opp_overlap 149098 149100 CTATTGGATAAATCA TACACT CGG AGTGTA TTTTTTAGAGTTTCG VFMJ11_A0129 151484 - 149076 - | beta-mannosidase VFMJ11_A0130 151459 - 151575 + | hypothetical protein TERM 169 151876 - 151888 + FH 81 -7.7 -4.29139 | opp_overlap 151876 151875, overlap 151873 TAGTCCAAAATGAAG CAGCA ACG TGCTG TTATTTTGAGTTTAA TERM 170 152140 - 152153 + G 71 -3.8 -4.90079 | overlap 152145 TACAGATCTTATTAG CGAC AGAAAA GTCG TTTTCTTATTCGGAT VFMJ11_A0131 151932 - 153815 + | methyl-accepting chemotaxis protein TERM 171 153874 - 153835 - T 83 -5.1 -5.40474 | opp_overlap 153837, overlap 153837 ATCCCCCTAAAAAAA TAGCCTCTTTCATTTAG TGGCAG CTAAATTTAAGAGGCTT TTTTTATTAGAGAGC TERM 172 153837 - 153872 + T 100 -8.4 -5.7946 | opp_overlap 153837 153835 CCCCCTAAAAAAATA GCCTCTTTCATTTAGT GGCA GCTAAATTTAAGAGGC TTTTTTTATTAGAGA TERM 173 153872 - 153837 - T 81 -7.7 -4.34482 | opp_overlap 153837, overlap 153835 CCCCCTAAAAAAATA GCCTCTTTCATTTAG TGGCAG CTAAATTTAAGAGGC TTTTTTTATTAGAGA VFMJ11_A0132 154057 - 153941 - | hypothetical protein VFMJ11_A0133 154918 - 154145 - | LuxR family transcriptional regulatory protein TERM 174 155476 - 155486 + G 72 -3.2 -5.12068 | overlap 155468 AGCTGATGTCAGTTA TGGC TTT GCTA TTTTTATTCAATCTA VFMJ11_A0134 155249 - 155533 + | hypothetical protein VFMJ11_A0136 155568 - 155996 + | hypothetical protein VFMJ11_A0135 156473 - 155988 - | hypothetical protein VFMJ11_A0137 156665 - 157615 + | multidrug resistance protein A VFMJ11_A0138 157620 - 158546 + | daunorubicin resistance ATP-binding protein DrrA VFMJ11_A0139 158543 - 159643 + | export ABC transporter permease protein TERM 175 159662 - 159693 + F 76 -4.5 -5.09204 | gap 1, opp_overlap 159662 159663, overlap 159663 GTTAAATAGAGAGAA TGCCCTG-ATTGTT TGAGC ACCAATTCAGGGCG TTTTTATTCCAATCT VFMJ11_A0140 160095 - 160217 + | hypothetical protein TERM 176 160269 - 160249 - Tf 100 -10.5 -6.20267 | opp_overlap 160249 CTAAAAACAAAAAAA GAGCACATT GAT AATGCGCTC TTTTTATTTAAACCA TERM 177 160249 - 160269 + TF 90 -8.3 -5.27335 | opp_overlap 160249 CTAAAAACAAAAAAA GAGCACATT GAT AATGCGCTC TTTTTATTTAAACCA VFMJ11_A0141 160950 - 160291 - | major NAD(p)h-flavin oxidoreductase VFMJ11_A0142 160938 - 161057 + | hypothetical protein VFMJ11_A0143 161169 - 162338 + | methyltransferase VFMJ11_A0144 162414 - 162950 + | acetyltransferase TERM 178 162987 - 163022 + F 100 -12.1 -4.75356 | opp_overlap 162987 GCATATCGATAAAAA GGGATAATCGTACTT TGTAGT AAGTACAATTATCCC TTTTTGCGTATATTT TERM 179 163022 - 162987 - f 100 -14.3 -4.89852 | opp_overlap 162987 GCATATCGATAAAAA GGGATAATCGTACTT TGTAGT AAGTACAATTATCCC TTTTTGCGTATATTT VFMJ11_A0145 163147 - 164076 + | virulence factor MviM VFMJ11_A0146 164931 - 164080 - | transporter, drug/metabolite exporter family TERM 180 165015 - 164990 - R 100 -10.5 -5.28176 | opp_overlap 164993 GTTATTTATAAAAAA TAACCCCACTC AAAA GAGCAGGGTTA TGTGCAGATCGTTCG VFMJ11_A0147 166145 - 165042 - | N-ethylmaleimide reductase gloA_2 166538 - 166158 - | lactoylglutathione lyase TERM 181 166222 - 166212 - G 73 -6.8 -4.15044 | opp_overlap 166212 CGGGTCTGTAATAAA CGCA ATA TGCG TTGTACCGCCTTTTA TERM 182 166446 - 166406 - G 72 -10 -2.57132 | gap 1, opp_overlap 166408 166418, overlap 166409 CGCCTTCCTCATAAC CAACGAAAACGAGTGTATA GCGA TATTCACT-GTTTTCGCTG TGATCGAGCACTTTC TERM 183 166710 - 166677 - R 93 -12.6 -3.34089 | opp_overlap 166683, overlap 166683 TTTTAATAACGAATA CAAAAATGCCGCAG TATTAT CTGCGGCATTTTCA AATTTAAAACGTATG TERM 184 166683 - 166704 + r 100 -11.6 -4.24002 | opp_overlap 166677 166683 TAACGAATACAAAAA TGCCGCAG TATTAT CTGCGGCA TTTTCAAATTTAAAA TERM 185 166704 - 166683 - R 100 -11.6 -5.1485 | opp_overlap 166683, overlap 166677 TAACGAATACAAAAA TGCCGCAG TATTAT CTGCGGCA TTTTCAAATTTAAAA VFMJ11_A0149 167840 - 166728 - | NADH-dependent flavin oxidoreductase TERM 186 167920 - 167905 - H 83 -4.8 -5.4387 | opp_overlap 167905 ATATAAAGCAAAAAA CTTAAT CTGT ATTAAG TTCATGTCATATCCG TERM 187 167987 - 167949 - H 71 -5.5 -4.60258 | gap 1, opp_overlap 167949 167948 167954, overlap 167954 CGATTAAACAACAAA CAAAATAGGG-AGAATTA TTCT TACTTCTTCCCTATATTG CTGTTTTTATATGAT TERM 188 167982 - 167954 - H 73 -4 -5.20331 | gap 1, opp_overlap 167949 167948 167954, overlap 167949 AAACAACAAACAAAA TAGGG-AGAATTA TTCT TACTTCTTCCCTA TATTGCTGTTTTTAT VFMJ11_A0150 168172 - 169638 + | inner membrane transporter YbgH TERM 189 169654 - 169676 + F 86 -10.6 -3.56109 | opp_overlap 169654, overlap 169650 169645 TTCCATTATAAATAA CAGCAAGCTG CCA TGGCTTGCTG TTCCTTATCTCTTTC TERM 190 169676 - 169654 - f 89 -9.2 -4.11183 | opp_overlap 169654 169650 169645 TTCCATTATAAATAA CAGCAAGC TGCCATG GCTTGCTG TTCCTTATCTCTTTC VFMJ11_A0151 169983 - 171467 + | amino acid/peptide transporter TERM 191 171553 - 171515 - f 80 -2.6 -5.72254 | gap 1, opp_overlap 171515 TGAAATAATAAAAAA CCAGTGTTATTTCTTCT TATCAT AGAAGAAATAGG-CTGG TTTTTTTGATCTCTG TERM 192 171515 - 171553 + F 93 -7 -5.60864 | gap 1, opp_overlap 171515 TGAAATAATAAAAAA CCAGTGTTATTTCTTCT TATCAT AGAAGAAATAG-GCTGG TTTTTTTGATCTCTG VFMJ11_A0152 171652 - 172002 + | phage shock protein E VFMJ11_A0153 172719 - 172012 - | DNA-3-methyladenine glycosylase VFMJ11_A0154 172906 - 173391 + | hypothetical protein TERM 193 173546 - 173590 + F 70 -7.3 -3.72989 | overlap 173555 173556 173579 TAAGTCTCTATTAAG TAGATCTGCGTCACAATCTCA TTT TGACTTTGTGATTTAGATCTA TTTAAATCTCCATTT VFMJ11_A0155 173682 - 173951 + | PTS system, IIB component VFMJ11_A0156 173967 - 175223 + | ascorbate-specific PTS system enzyme IIC VFMJ11_A0157 175220 - 175669 + | PTS system, 3-keto-L-gulonate specific IIA component TERM 194 175684 - 175664 - T 72 -4.8 -4.66987 | opp_overlap 175666, overlap 175651 GATATTCTAAGAAAA TACTAGAA TCCCC CTCTAGTA ACTTATTGATGAGCT TERM 195 175689 - 175726 + T 89 -9.3 -4.25388 | opp_overlap 175690, overlap 175690 CCCCTCTAGTAACTT ATTGATGAGCTAGTGAT TGAA ATTCCTAGCTCATCAAA TTTCGTTTTAATCTA TERM 196 175725 - 175690 - T 82 -11.4 -2.56596 | gap 1, opp_overlap 175689 175690 CCCTCTAGTAACTTA TTGATGAGCTAGTGATT GAA ATTC-CTAGCTCATCAA ATTTCGTTTTAATCT TERM 197 175690 - 175725 + T 87 -12.8 -3.14148 | opp_overlap 175690, overlap 175689 CCCTCTAGTAACTTA TTGATGAGCTAGTGAT TGAA ATTCCTAGCTCATCAA ATTTCGTTTTAATCT VFMJ11_A0158 176137 - 175739 - | hypothetical protein VFMJ11_A0159 177210 - 176230 - | hypothetical protein TERM 198 176589 - 176603 + g 70 -8.6 -3.40522 | CTGATTTGTTTTGGC TTCCTG ATA CAGGAA TTATAATGGCAACAT TERM 199 177090 - 177101 + g 79 -5.8 -4.93296 | AAATTTGAGTGTATA CAGG CGAC CCTG TTTTTGTACTAATGA VFMJ11_A0160 177702 - 178529 + | caax amino protease family protein VFMJ11_A0161 178694 - 178930 + | hypothetical protein TERM 200 178974 - 178931 - T 72 -8.4 -3.37876 | opp_overlap 178930 178932 178933, overlap 178932 AACAACATCGCATAA CGCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGAT ATTTACTCGTTAATG TERM 201 178932 - 178973 + T 90 -11.9 -3.51124 | opp_overlap 178931 178932, overlap 178930 178933 ACAACATCGCATAAC GCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGA TATTTACTCGTTAAT TERM 202 178973 - 178932 - T 84 -11.9 -2.62003 | opp_overlap 178932 178930 178933, overlap 178931 ACAACATCGCATAAC GCTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAGA TATTTACTCGTTAAT TERM 203 178933 - 178972 + T 100 -15.4 -2.69951 | opp_overlap 178932 178931, overlap 178932 178930 CAACATCGCATAACG CTTGATGATTAAGGAATT TTAT AATTGCTTAATCATCAAG ATATTTACTCGTTAA VFMJ11_A0162 179428 - 178991 - | hypothetical protein TERM 204 180350 - 180362 + G 74 -4.9 -4.68424 | AGAATGTACCTCTGA TTTTG CTG CAAAA TTTTTAGCTAAGTTA VFMJ11_A0163 179805 - 181403 + | dnd system-associated protein 3 TERM 205 182380 - 182366 - g 73 -5.6 -4.55128 | opp_overlap 182366 ATGTGGAAATGAAAA GTGCAG ACT CAGCAC TAGATTGGTTAGGTA VFMJ11_A0164 181405 - 182745 + | dnd system-associated protein 1 TERM 206 184052 - 184069 + G 70 -9.9 -2.62463 | opp_overlap 184038, overlap 184038 184051 GGCAGCGCATATTCA CTGCTTG ATGC CAAGCAG GTTGTCGATGCTGCA VFMJ11_A0165 182726 - 187813 + | dnd system-associated protein 2 TERM 207 187843 - 187829 - f 100 -11.4 -4.21194 | opp_overlap 187829 CTTTATGATTTAAAA CGCCCT TTT AGGGCG TTTTTTTGATCTGAT TERM 208 187829 - 187843 + F 100 -11.4 -5.59357 | opp_overlap 187829 CTTTATGATTTAAAA CGCCCT TTT AGGGCG TTTTTTTGATCTGAT TERM 209 188006 - 188016 + F 84 -6.8 -5.15969 | AAAGTCATATTGGAG CGGA GTA TCCG TTTTTTAGGTTAGCG VFMJ11_A0166 188595 - 189104 + | hypothetical protein TERM 210 189517 - 189503 - g 75 -2.8 -5.3236 | opp_overlap 189512, overlap 189504 AGAAGCTATAAAAAA CCCTGA CTT TCAAGA CTTTGATATTTTATG VFMJ11_A0167 189117 - 190235 + | putative DGQHR domain protein TERM 211 190299 - 190268 - T 77 -9.6 -3.0364 | gap 1, opp_overlap 190275 190279, overlap 190270 TATAATATTAAATTA TAGGAAAGGTCGTCA GTA TGT-GACCTTTCCTA CTCAAATGATAAGTT dndE 190660 - 190313 - | DNA sulfur modification protein DndE dndD 192624 - 190660 - | DNA sulfur modification protein DndD dndC 194315 - 192681 - | putative sulfurtransferase DndC TERM 212 193068 - 193082 + g 73 -8.6 -3.62597 | CCAGTCTGGTTCATT TGGATC TTT GATCCA TTCTTGACGAATAGC dndB 195391 - 194312 - | DNA sulfur modification protein DndB TERM 213 194604 - 194614 + g 79 -3.2 -5.40072 | TGACGTAGTTGAGCT GGAG ATA CTTC TTTTTTTAGAACAAG VFMJ11_A0172 197650 - 195599 - | hypothetical protein TERM 214 196637 - 196616 - G 84 -8 -4.74013 | opp_overlap 196615 196618 TTTAAACACATAAAA GATCCCCG GAGCCA CAGGGATC GCTTCTTCTTGTAAG VFMJ11_A0173 198757 - 197726 - | hypothetical protein TERM 215 198268 - 198292 + g 72 -4.3 -4.74801 | overlap 198273 AGTGACCTAATAAGT GAATATCGATG TCG CATTGGTTTTC TTTTTCATGCAATTG TERM 216 198273 - 198287 + g 75 -2.8 -5.3104 | overlap 198268 CCTAATAAGTGAATA TCGATG TCG CATTGG TTTTCTTTTTCATGC TERM 217 199049 - 199036 - H 70 -2.4 -5.35224 | TTTATAAAAATAAAA GAGT AGTACA ACTC AAAACGCTCACAAAA TERM 218 199085 - 199072 - H 78 -2.4 -5.69262 | opp_overlap 199072 TCACAAAAATAAAAA TGCA AATATA TGCA TTGTGAGGCTAGGCG VFMJ11_A0174 199131 - 199253 + | hypothetical protein TERM 219 200106 - 200120 + G 81 -2.8 -5.54894 | TTTAGAAACCTTGAT GCATAT GGA AGATGC TTTTTTTGATGCGTT VFMJ11_A0175 199312 - 200259 + | hypothetical protein TERM 220 200282 - 200330 + T 91 -12.8 -3.23395 | gap 1, opp_overlap 200287 200292, overlap 200292 TCGAAATAGAATATT TAAAATAAAAGCCTTGGTGA-CA TAAG TGATCACCAAGGCTTTTTTATTA TTGATAGTAATAGGT TERM 221 200325 - 200287 - T 100 -12.7 -4.31043 | gap 1, opp_overlap 200282 200292, overlap 200292 ATAGAATATTTAAAA TAAAAGCCTTGGTGA-CA TAAG TGATCACCAAGGCTTTTT TATTATTGATAGTAA TERM 222 200292 - 200320 + T 100 -12.6 -5.66229 | gap 1, opp_overlap 200287 200292, overlap 200282 ATATTTAAAATAAAA GCCTTGGTGA-CA TAAG TGATCACCAAGGC TTTTTTATTATTGAT TERM 223 200320 - 200292 - T 100 -12.6 -5.11836 | gap 1, opp_overlap 200292 200282, overlap 200287 ATATTTAAAATAAAA GCCTTGGTGA-CA TAAG TGATCACCAAGGC TTTTTTATTATTGAT VFMJ11_A0176 201733 - 200345 - | transporter, NadC family TERM 224 200772 - 200784 + g 72 -3.3 -5.15381 | opp_overlap 200772 AATAACAGTAATACA CCCCA GTC TGTGG TTTTTTCAATGTCTT TERM 225 200949 - 200935 - G 70 -3.6 -4.87626 | CCGTAAGAGCAAAAA TCATTA AAG TAACGA TTTTACCTTTATCCC TERM 226 202039 - 202069 + r 100 -14.2 -4.2828 | opp_overlap 202043 GGGAGTTATTTGTGA TTAACGCCACCA GTTATTA TGGTGGCGTTAA TTTTACTGAGTAAAG TERM 227 202065 - 202043 - R 83 -10.6 -3.14931 | opp_overlap 202039 GTTATTTGTGATTAA CGCCACCA GTTATTA TGGTGGCG TTAATTTTACTGAGT pflB_2 204389 - 202092 - | formate acetyltransferase TERM 228 205792 - 205779 - g 73 -6.7 -4.17448 | CAACTAAATGATAAA GGTGA ATTT TCACC TCAATACGGTCCTAA TERM 229 206190 - 206178 - g 76 -9.1 -3.65522 | CACTTAGTTGAAGAA GCGGT AAC ACCGC CACCATCAGGTGATT VFMJ11_A0178 204918 - 206396 + | GlcNAc-binding protein A TERM 230 206435 - 206462 + T 100 -10.8 -5.38958 | gap 1, opp_overlap 206435 206432 206430 206437 TAAAAAATAATATGA GAGCCTTCAATAT ATA ATAT-GAAGGCTC TTTTTATTTATAAGT TERM 231 206462 - 206435 - T 83 -10.8 -3.00046 | gap 1, opp_overlap 206435, overlap 206432 206430 206437 TAAAAAATAATATGA GAGCCTTCAATAT ATA ATAT-GAAGGCTC TTTTTATTTATAAGT VFMJ11_A0179 207451 - 206513 - | HvnB; halovibrin TERM 232 207507 - 207487 - H 85 -4.1 -5.76237 | overlap 207489 TATATAAATAAAAAA TTGATTATT TTT AATAATCGA AATAAATTCTAAGTT TERM 233 208082 - 208067 - g 87 -4.8 -5.38497 | ATTGAAAGCAAAAAA TGAAAT TCGT ATTTCA AGTGTGTTTCGAAAA VFMJ11_A0180 207771 - 208262 + | hypothetical protein VFMJ11_A0181 208508 - 208287 - | hypothetical protein VFMJ11_A0182 208570 - 208689 + | hypothetical protein VFMJ11_A0183 208906 - 209100 + | hypothetical protein TERM 234 209140 - 209157 + T 83 -8.4 -4.31587 | opp_overlap 209140, overlap 209138 TTAGATACTTATAGA TGCGCC AGAACC GGCGCA TTCTTGTTTTTAACA TERM 235 209157 - 209140 - T 73 -9.1 -2.94354 | opp_overlap 209140 209138 TTAGATACTTATAGA TGCGCCA GAAC CGGCGCA TTCTTGTTTTTAACA VFMJ11_A0184 209553 - 209167 - | hypothetical protein TERM 236 210074 - 210084 + G 81 -5.4 -5.02476 | opp_overlap 210072 210074 AGCTAGAAGATGAGA CAGA ACG TCTG TTTTTTCAGCAATCT VFMJ11_A0185 209929 - 210135 + | hypothetical protein TERM 237 210856 - 210842 - g 75 -10 -3.09823 | overlap 210844 TTCCTCAAAACCACA CACCAG TAA CTGGTG AAGATGCTGAGAAAT VFMJ11_A0186 210226 - 210948 + | glucose-1-phosphate adenylyl transferase TERM 238 210971 - 211004 + F 100 -10.5 -4.77438 | gap 1, opp_overlap 210971 210973 210978, overlap 210978 TTTAATTTTCAAAAT GATAAAAGCCGAGC CTATGTT GCTCGGCTTTT-TC TTTTTAATAATGGCT TERM 239 211004 - 210971 - f 80 -10.5 -3.08314 | gap 1, opp_overlap 210971 210978, overlap 210973 210978 TTTAATTTTCAAAAT GATAAAAGCCGAGC CTATGTT GCTCGGCTTTT-TC TTTTTAATAATGGCT TERM 240 211003 - 210973 - f 77 -9.8 -3.09718 | opp_overlap 210971 210978, overlap 210971 210978 TAATTTTCAAAATGA TAAAAGCCGAGC CTATGTT GCTCGGCTTTTT CTTTTTAATAATGGC TERM 241 210978 - 210998 + F 100 -9.7 -5.65496 | opp_overlap 210973 210971 210978, overlap 210971 TTCAAAATGATAAAA GCCGAGC CTATGTT GCTCGGC TTTTTCTTTTTAATA TERM 242 210998 - 210978 - f 100 -9.7 -4.67635 | opp_overlap 210978 210971, overlap 210973 210971 TTCAAAATGATAAAA GCCGAGC CTATGTT GCTCGGC TTTTTCTTTTTAATA VFMJ11_A0187 211103 - 212593 + | putative ATP-dependent RNA helicase RhlE TERM 243 212651 - 212617 - f 100 -9.4 -5.08824 | opp_overlap 212626 212649, overlap 212618 212621 212626 TGCTTATGTAAAAAA GTAATAAAACCGGCAA TTT TCGCCGGTTTTTTTAT AAGCTATATATCTCC TERM 244 212650 - 212618 - f 95 -12.9 -3.64812 | opp_overlap 212626 212649, overlap 212617 212621 212626 GCTTATGTAAAAAAG TAATAAAACCGGCAA TTT TCGCCGGTTTTTTTA TAAGCTATATATCTC TERM 245 212647 - 212621 - f 93 -10.2 -3.94773 | opp_overlap 212626, overlap 212618 212617 212626 TATGTAAAAAAGTAA TAAAACCGGCAA TTT TCGCCGGTTTTT TTATAAGCTATATAT TERM 246 212642 - 212626 - f 100 -10.1 -4.95211 | opp_overlap 212626, overlap 212621 212618 212617 AAAAAAGTAATAAAA CCGGCAA TTT TCGCCGG TTTTTTTATAAGCTA TERM 247 212626 - 212642 + F 93 -7.9 -5.626 | opp_overlap 212626 212621 212618 212617 AAAAAAGTAATAAAA CCGGCAA TTT TCGCCGG TTTTTTTATAAGCTA VFMJ11_A0188 212830 - 214281 + | ggdef domain protein TERM 248 214324 - 214303 - f 77 -8.8 -3.53811 | opp_overlap 214303 CCTACCTTGTTCAAA TCCAGTGA GATGAT TCACTGGA TTTTTCATTAGAAAA TERM 249 214303 - 214324 + F 100 -9.5 -4.8622 | opp_overlap 214303 CCTACCTTGTTCAAA TCCAGTGAG ATGA TTCACTGGA TTTTTCATTAGAAAA VFMJ11_A0189 214531 - 215733 + | multidrug resistance protein D TERM 250 215795 - 215769 - T 100 -15.2 -4.77775 | opp_overlap 215769 215792 215794 ATTTGATAAAAGAAA GGCCGAGTAGGT AAT ATCTACTCGGCC TTTTTATTTATAATG TERM 251 215769 - 215795 + T 100 -17.4 -5.40464 | opp_overlap 215769, overlap 215792 215794 ATTTGATAAAAGAAA GGCCGAGTAGGT AAT ATCTACTCGGCC TTTTTATTTATAATG VFMJ11_A0190 217228 - 215840 - | dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein TERM 252 218596 - 218571 - g 70 -5.5 -4.34771 | opp_overlap 218571 TAAAACGTATCAAAA TGATAAACAAG TTTT CTCGTTGATCA TGTGTGATATTGATA VFMJ11_A0191 217531 - 218979 + | sensory box/ggdef family protein VFMJ11_A0192 219058 - 219789 + | hypothetical protein VFMJ11_A0193 221010 - 219805 - | permease VFMJ11_A0194 221274 - 221912 + | ferrichrome transport ATP-binding protein FhuC VFMJ11_A0195 221951 - 222844 + | ferrichrome-binding protein TERM 253 223269 - 223288 + G 78 -4.2 -5.20333 | CATTTTTAGGCGGAG CATTTGCC ACCG GGCTAGTG TTTTTATTGTCGGTA TERM 254 223345 - 223355 + G 87 -3.2 -5.85178 | GGTGCTAGCTGGAAT GGTT GTT AGCC TTTTTTTTGGGTCTT TERM 255 224704 - 224727 + G 71 -6 -4.1673 | opp_overlap 224703 224696, overlap 224705 TCATCAATATCAAGC TTCGCATCAA CTCA TTGCTGCGAG TTTGTTAGGCGGTTG VFMJ11_A0196 222857 - 224860 + | ferrichrome transport system permease protein FhuB VFMJ11_A0197 225009 - 226784 + | aerobactin siderophore biosynthesis protein IucA VFMJ11_A0198 226777 - 227688 + | N6-hydroxylysine acetyl transferase TERM 256 228604 - 228627 + G 72 -4.6 -4.66609 | overlap 228600 228620 TTCTTGCGGGGCCAA TAGCATCCGA TTGG TTGGATTCTA TTTTTAAATCGGATC VFMJ11_A0199 227688 - 229448 + | siderophore biosynthesis IucC protein TERM 257 229838 - 229819 - g 79 -9.4 -3.69434 | TTAAGTAACGTGAAA TTCTCAAC CCAT GTTGAGAA TGTAGAATTTAACGG VFMJ11_A0200 229477 - 230775 + | L-lysine 6-monooxygenase TERM 258 230806 - 230834 + F 78 -6.9 -4.36554 | TTTTATAAAAATAGT TGAATACGGAT TTTTATC ATTCGTATTCA TTTGTTGTGATAATA VFMJ11_A0201 230870 - 233044 + | ferric aerobactin receptor (Cloacin receptor) TERM 259 233070 - 233096 + F 100 -11 -5.14163 | opp_overlap 233066 233070 233073 TGTAAATAAAATCAA TAAGGCTATCTT TAT GAGGTAGCCTTA TTTTTATTAATAACT TERM 260 233096 - 233070 - f 75 -8.1 -3.88331 | opp_overlap 233070, overlap 233066 233073 TGTAAATAAAATCAA TAAGGCTATCT TTATG AGGTAGCCTTA TTTTTATTAATAACT VFMJ11_A0202 233226 - 234149 + | membrane protease domain protein TERM 261 234329 - 234339 + G 76 -3.2 -5.18561 | GCAAATGCAGTGGAT CAGT TTT GCTG TTTTTTCACTCTTTA VFMJ11_A0203 234159 - 234611 + | membrane protein TERM 262 234631 - 234670 + F 73 -3.7 -5.09173 | overlap 234659 ACATTTTCATTTAAA GTGGATAATTTGTTGTG TTTAAC CGCAATGAATCATTCAC TTTTTTCACATATTC VFMJ11_A0204 234848 - 236098 + | methyl-accepting chemotaxis protein TERM 263 236259 - 236296 + F 95 -8.8 -5.54192 | gap 1, opp_overlap 236259 CATATTATCAAAAAA TAAGTAATTT-ACAGCA ATAAA TGCTGTCGAATTACTTA TTTTTTTACATTCGT TERM 264 236296 - 236259 - f 84 -6.6 -5.20216 | gap 1, opp_overlap 236259 CATATTATCAAAAAA TAAGTAATT-TACAGCA ATAAA TGCTGTCGAATTACTTA TTTTTTTACATTCGT TERM 265 237038 - 237061 + G 70 -9 -3.18945 | opp_overlap 237052 GTTGATATTAACCTT GGTTTTGTTA GTAA TAACAGAACC TCTATTATGAGTAGC VFMJ11_A0205 236525 - 238156 + | methyl-accepting chemotaxis protein TERM 266 238182 - 238201 + F 95 -8.6 -5.64274 | opp_overlap 238182 AGTTTAAAGAGCAAA GTGATGGC AAAT GTCATCAC TTTTTTTATGAGTCC TERM 267 238269 - 238255 - f 82 -4.4 -5.5604 | GGAATGAATAAAAAA TTTTTT GCA AAAAAA ACATTAGCGTCTTGT VFMJ11_A0206 238618 - 240243 + | methyl-accepting chemotaxis protein TERM 268 240335 - 240318 - T 93 -9.9 -4.18303 | opp_overlap 240318, overlap 240311 ACTAGAAACTAGAAA GGAGATC ATAT GATCTCC TTTTTTTATGCCTTC TERM 269 240318 - 240335 + T 100 -9.9 -5.66684 | opp_overlap 240318 240311 ACTAGAAACTAGAAA GGAGATC ATAT GATCTCC TTTTTTTATGCCTTC VFMJ11_A0207 241253 - 240375 - | dehydrogenase VFMJ11_A0208 241928 - 241404 - | hypothetical protein TERM 270 242078 - 242109 + r 70 -3.8 -4.95758 | gap 1, opp_overlap 242081, overlap 242079 242081 TGTAATAAAAAGTAA AAAGCCATATCAAGA GGA TCT-GATATGGCTGA TTTTTATGATGTAAT TERM 271 242081 - 242106 + r 81 -9.9 -3.34705 | gap 1, opp_overlap 242081, overlap 242079 242078 AATAAAAAGTAAAAA GCCATATCAAGA GGA TCT-GATATGGC TGATTTTTATGATGT TERM 272 242106 - 242081 - R 100 -9.9 -5.24003 | gap 1, opp_overlap 242079 242078 242081 AATAAAAAGTAAAAA GCCATATCAAGA GGA TCT-GATATGGC TGATTTTTATGATGT VFMJ11_A0209 243066 - 242146 - | permease VFMJ11_A0210 243175 - 243486 + | transcriptional regulator, ArsR family VFMJ11_A0211 243509 - 243982 + | methylated-dna--protein-cysteine methyltransferase VFMJ11_A0212 245340 - 244000 - | sensor protein IrlS VFMJ11_A0213 246025 - 245345 - | transcriptional activator protein IrlR VFMJ11_A0214 246509 - 246129 - | hypothetical protein VFMJ11_A0215 246704 - 247369 + | transcriptional regulatory protein CpxR VFMJ11_A0216 247375 - 248763 + | two component system histidine kinase TERM 273 248820 - 248793 - f 93 -7.1 -5.52023 | opp_overlap 248793 AGCATTAATAAAAAA GGTCAATTTTG TAAAAT CAGAATTGACC TTTTTTTGTAATATC TERM 274 248793 - 248820 + F 100 -9.3 -5.69473 | opp_overlap 248793 AGCATTAATAAAAAA GGTCAATTTTG TAAAAT CAGAATTGACC TTTTTTTGTAATATC VFMJ11_A0217 249047 - 250030 + | hypothetical protein VFMJ11_A0218 250040 - 250582 + | tetratricopeptide repeat domain protein VFMJ11_A0219 250672 - 252306 + | hypothetical protein VFMJ11_A0220 252303 - 253085 + | chemotaxis MotA protein TERM 275 253704 - 253677 - g 72 -8.6 -3.51924 | gap 1, opp_overlap 253677 253680 253683, overlap 253680 GCGTTACCGATAGAA CAACAGCGTCAAT TAA ATCGACG-TGTTG TGATTTATATTAAAA VFMJ11_A0221 253086 - 253727 + | chemotaxis MotB protein TERM 276 253787 - 253758 - T 81 -7.9 -4.42806 | opp_overlap 253763, overlap 253763 CTAGCTGTAAATAAA GTAAAGCGCTCTA AATA TAGAGCGCTTTTT TTATAAGAAATGAAT TERM 277 253782 - 253763 - T 100 -12.2 -4.27211 | opp_overlap 253763, overlap 253758 TGTAAATAAAGTAAA GCGCTCTA AATA TAGAGCGC TTTTTTTATAAGAAA TERM 278 253763 - 253782 + T 100 -12.2 -5.60993 | opp_overlap 253763 253758 TGTAAATAAAGTAAA GCGCTCTA AATA TAGAGCGC TTTTTTTATAAGAAA VFMJ11_A0222 256285 - 253832 - | trimethylamiNe-n-oxide reductase 2 VFMJ11_A0223 257389 - 256298 - | cytoChrome c-type protein TorY VFMJ11_A0224 257749 - 259851 + | FhuE receptor TERM 279 259891 - 259868 - f 79 -5.2 -5.08601 | opp_overlap 259871, overlap 259871 TTATTGTAATAAAAA TAAGGGAGGC CTCG GTCTCCCTTT AGTGCGTTTATTTGA TERM 280 259888 - 259871 - f 80 -6.9 -4.63592 | opp_overlap 259871, overlap 259868 TTGTAATAAAAATAA GGGAGGC CTCG GTCTCCC TTTAGTGCGTTTATT TERM 281 259871 - 259888 + F 81 -9.1 -3.83771 | opp_overlap 259868 259871 TTGTAATAAAAATAA GGGAGGC CTCG GTCTCCC TTTAGTGCGTTTATT VFMJ11_A0225 259962 - 260729 + | chromosome segregation ATPase TERM 282 261706 - 261694 - g 70 -3.4 -4.88736 | TACGATGCAGAAAAA CAAC GTTCA GTTG AAGCATTAGAATTAC VFMJ11_A0226 260731 - 262086 + | TolQ protein VFMJ11_A0227 262086 - 262595 + | TolQ protein VFMJ11_A0228 262592 - 262996 + | biopolymer transport protein exbD2 VFMJ11_A0229 262996 - 263616 + | TonB protein VFMJ11_A0230 263616 - 264794 + | TPR domain protein TERM 283 264838 - 264800 - T 86 -10.5 -3.67498 | opp_overlap 264804 264811, overlap 264804 264811 TAAGGGTTAATATAA TTAATAAAAAAGCAGCG ATCAA CGCTGCTTTTTTATTGT TACCATTAATGAAGT TERM 284 264834 - 264804 - T 100 -15.7 -3.54382 | opp_overlap 264804 264811, overlap 264800 264811 GGTTAATATAATTAA TAAAAAAGCAGCG ATCAA CGCTGCTTTTTTA TTGTTACCATTAATG TERM 285 264804 - 264834 + T 100 -15.7 -3.68936 | opp_overlap 264800 264804 264811, overlap 264811 GGTTAATATAATTAA TAAAAAAGCAGCG ATCAA CGCTGCTTTTTTA TTGTTACCATTAATG TERM 286 264827 - 264811 - T 100 -9.4 -5.57396 | opp_overlap 264811 264804, overlap 264804 264800 ATAATTAATAAAAAA GCAGCG ATCAA CGCTGC TTTTTTATTGTTACC TERM 287 264811 - 264827 + T 100 -9.4 -5.64873 | opp_overlap 264804 264800 264811, overlap 264804 ATAATTAATAAAAAA GCAGCG ATCAA CGCTGC TTTTTTATTGTTACC VFMJ11_A0231 265323 - 264844 - | transcriptional repressor VFMJ11_A0232 266255 - 265323 - | glutathione import ATP-binding protein GsiA VFMJ11_A0233 267118 - 266252 - | oligopeptide transport ATP-binding protein OppD VFMJ11_A0234 267416 - 268552 + | hypothetical protein TERM 288 268571 - 268600 + T 93 -10.2 -4.04806 | opp_overlap 268571 CTTACTTTAATAAAA GTGACTTAAAGG CTTAAT TCTTTAAGTCAC TTATTTAATATCCAA TERM 289 268600 - 268571 - T 100 -9.5 -4.65916 | opp_overlap 268571 CTTACTTTAATAAAA GTGACTTAAAG GCTTAATT CTTTAAGTCAC TTATTTAATATCCAA VFMJ11_A0235 268976 - 268605 - | CBS domain protein TERM 290 268725 - 268708 - G 77 -7.7 -4.14739 | CGACTGATTTCAAAA CGCTCAA ATAG CTGAGCG CAATATTTTATGTTC VFMJ11_A0236 269306 - 269455 + | hypothetical protein TERM 291 269469 - 269497 + T 95 -3.3 -6.22691 | opp_overlap 269469, overlap 269460 AAATTTTAAGTAAAA GCTAATTGA ATCTCCCCCTA TCAATTAGC TTTTTTTTATTATTC VFMJ11_A0237 270109 - 269507 - | hypothetical protein VFMJ11_A0238 271202 - 270264 - | membrane protein VFMJ11_A0239 272448 - 271480 - | endonuclease/exonuclease/phosphatase family protein VFMJ11_A0240 273700 - 272531 - | chondroitin sulfate/heparin utilization regulation protein TERM 292 273205 - 273217 + g 71 -6.3 -4.31043 | opp_overlap 273204 TGAGTGTATTAAATT CAACA TTT TGTTG TTTTAAGTGTTGTAT VFMJ11_A0241 273864 - 275261 + | phosphatidylserine decarboxylase TERM 293 275280 - 275303 + F 86 -6 -5.49234 | opp_overlap 275264 275263, overlap 275266 275263 ACTCTTTAGATTTAA GAGTGCCTTG TGTT TAAGGTGCTC TTTTTTGTTAGCTAT VFMJ11_A0242 275330 - 276529 + | outer membrane protein P1 VFMJ11_A0243 276644 - 278272 + | integral membrane protein TERM 294 278294 - 278333 + F 87 -13.2 -2.6248 | opp_overlap 278300, overlap 278300 CCAGTTTACATCGAA TAGAAATAGGCTAATCAT GAGA ATGGTTAGCCTATTTTTG CTATTATCTGCTTAT TERM 295 278300 - 278327 + F 100 -12.2 -4.9181 | opp_overlap 278300, overlap 278294 TACATCGAATAGAAA TAGGCTAATCAT GAGA ATGGTTAGCCTA TTTTTGCTATTATCT TERM 296 278327 - 278300 - f 93 -10 -4.22678 | opp_overlap 278300 278294 TACATCGAATAGAAA TAGGCTAATCAT GAGA ATGGTTAGCCTA TTTTTGCTATTATCT VFMJ11_A0244 278371 - 279057 + | transcriptional regulator VFMJ11_A0245 279045 - 280469 + | two component sensor kinase TERM 297 280516 - 280482 - T 100 -14.5 -4.23528 | opp_overlap 280484 280489, overlap 280484 280489 TAAGTTAAAATGAAA TATAAAAGAGGAGCG ATGAA CGCTCCTCTTTTATT GATTGGCTAGAGTAT TERM 298 280484 - 280514 + T 100 -17.1 -3.37522 | opp_overlap 280482 280484 280489, overlap 280489 AGTTAAAATGAAATA TAAAAGAGGAGCG ATGAA CGCTCCTCTTTTA TTGATTGGCTAGAGT TERM 299 280514 - 280484 - T 100 -17.1 -3.70102 | opp_overlap 280484 280489, overlap 280482 280489 AGTTAAAATGAAATA TAAAAGAGGAGCG ATGAA CGCTCCTCTTTTA TTGATTGGCTAGAGT TERM 300 280509 - 280489 - T 100 -12.6 -4.85894 | opp_overlap 280484 280489, overlap 280484 280482 AAATGAAATATAAAA GAGGAGCG ATGAA CGCTCCTC TTTTATTGATTGGCT TERM 301 280489 - 280509 + T 100 -12.6 -4.79174 | opp_overlap 280489 280484 280482, overlap 280484 AAATGAAATATAAAA GAGGAGCG ATGAA CGCTCCTC TTTTATTGATTGGCT VFMJ11_A0246 282075 - 280537 - | sulfatase family protein VFMJ11_A0247 283559 - 282117 - | hypothetical protein TERM 302 283621 - 283647 + r 100 -11.1 -4.11346 | AAAATTATCTCTATA CTCTCTATTAA GAATA TTAATAGAGAG TTGTTATTTCGCTAT VFMJ11_A0248 284580 - 283672 - | probable transcriptional regulator SyrB TERM 303 284095 - 284105 + g 72 -3.2 -5.05113 | ACGACCAATCTCTTG CTCT AAT AGGG TTTTATTTGTCTCCA VFMJ11_A0249 285057 - 285947 + | hypothetical protein TERM 304 286482 - 286467 - gf 72 -4.7 -4.77757 | TTGGAAAAATCAAAA GGCAA GTGCTA TTGCC GAAAGTGTGTTTCTA VFMJ11_A0250 286120 - 287085 + | hypothetical protein VFMJ11_A0251 287054 - 287374 + | hypothetical protein TERM 305 287406 - 287377 - f 89 -9.5 -4.13945 | opp_overlap 287383, overlap 287383 ATTTTTAGCCTAAAA TAAAAAGCATAGT TTCG ACTATGCTTTTTT TTGTTTCTAAAGAAA TERM 306 287400 - 287383 - f 95 -8.5 -5.46706 | opp_overlap 287383, overlap 287377 AGCCTAAAATAAAAA GCATAGT TTCG ACTATGC TTTTTTTTGTTTCTA TERM 307 287383 - 287400 + F 100 -8.5 -6.28967 | opp_overlap 287383 287377 AGCCTAAAATAAAAA GCATAGT TTCG ACTATGC TTTTTTTTGTTTCTA VFMJ11_A0252 287726 - 287938 + | hypothetical protein TERM 308 287964 - 287995 + F 75 -8.8 -3.37441 | opp_overlap 287956 287969, overlap 287956 287962 287960 287965 TGAATAATCATTCAA TGATATGGTGGGCA CTCT TGTTCACCATGTCG TGTATTATTTGCTAT TERM 309 287965 - 287994 + F 75 -10.1 -2.6138 | opp_overlap 287956 287969, overlap 287956 287964 287962 287960 GAATAATCATTCAAT GATATGGTGGGCA CTCT TGTTCACCATGTC GTGTATTATTTGCTA TERM 310 288181 - 288195 + G 85 -2.8 -5.80364 | overlap 288176 AGCAGCAGGTGATGT GAAGCT TAT ATCTTC TTTTTTTATTGCAAT VFMJ11_A0253 288179 - 288382 + | hypothetical protein cpaB_2 288391 - 289176 + | Flp pilus assembly protein CpaB VFMJ11_A0255 289187 - 290509 + | general secretion pathway protein D VFMJ11_A0256 290506 - 291042 + | lipoprotein, putative VFMJ11_A0257 291044 - 292261 + | ATPase involved in chromosome partitioning VFMJ11_A0258 292264 - 293550 + | TadA VFMJ11_A0259 293547 - 294470 + | Flp pilus assembly protein TadB VFMJ11_A0260 294470 - 295351 + | bipartite nuclear localization signal containing protein VFMJ11_A0261 295341 - 296084 + | TPR-repeat secretory protein VFMJ11_A0262 296089 - 296577 + | hypothetical protein VFMJ11_A0263 296561 - 297100 + | ATP/GTP-binding site motif A TERM 311 297343 - 297331 - g 71 -6.3 -4.22927 | overlap 297327 CTAGGAACAGACAAA TAGTC GTG GACTA TGTGAATGCCTACAT VFMJ11_A0264 297102 - 298373 + | hypothetical protein VFMJ11_A0265 298413 - 299180 + | outer membrane protein TERM 312 299211 - 299265 + F 100 -11.2 -4.17186 | TTTTTTGGCTCAGAA TAGAGTAATAATGAAATTTTAGAATG TAA TATTCTATAGTTTTATTGTTGCTCTA TTCTGTTTTGTTTTA TERM 313 299357 - 299396 + GF 88 -7.4 -4.86861 | GCTGACAGATAACAT GAGTTTGAATGTGTATTT AACT AAATATGAATTCAAGCTC TTTATTTGTTTATTA VFMJ11_A0266 299355 - 299936 + | hypothetical protein TERM 314 299939 - 299965 + GT 100 -3.9 -6.13503 | opp_overlap 299939 TACAGAAAAGTGAAA TGGTTAATA ATTCTCTTA TATTAACCA TTTTTTTTATTGCTG VFMJ11_A0267 299890 - 300333 + | hypothetical protein TERM 315 300354 - 300337 - T 100 -9.9 -5.70761 | opp_overlap 300337 300330 AAAATAAAATAAAAA TAGGCTC AAGT GAGCCTA TTTAAAAATTTTTGT TERM 316 300337 - 300354 + T 82 -9.9 -3.69455 | opp_overlap 300337, overlap 300330 AAAATAAAATAAAAA TAGGCTC AAGT GAGCCTA TTTAAAAATTTTTGT VFMJ11_A0268 302562 - 300352 - | hypothetical protein TERM 317 300855 - 300869 + g 70 -2.9 -5.02323 | TTGAAATGTTGCCAT TCATA TCTTC TATGA TTTTCTTTGTGATAA TERM 318 302328 - 302344 + g 75 -5.9 -4.81551 | opp_overlap 302328 TTTTGATTAATTCAA CATATCT TTT GGATATG TTTTTAATCTCAATC TERM 319 302433 - 302447 + g 78 -2.8 -5.52807 | AGTATTTATTTTCCG CATTTG TAG CAATTG TTTTTATTTCTTCTT VFMJ11_A0269 302883 - 302581 - | hypothetical protein TERM 320 303112 - 303128 + H 80 -5.1 -5.31275 | opp_overlap 303112, overlap 303104 TTCTCCTTTCGATAA CGAATGT ATA ACTTTCG TTTTTTATGGTGAAA TERM 321 303393 - 303374 - g 71 -5.1 -4.59027 | AATCATGAGACAAAA CAAACAA CATACC TTGTTTG GTGAATGCCTTGCAG VFMJ11_A0270 303363 - 304217 + | glycerol uptake facilitator protein TERM 322 305084 - 305074 - g 76 -3.2 -5.27477 | overlap 305076 AGGCCAAGCAAAAAA TACC TAT GGCA CAGGCTGCTTCTTGT glpK 304283 - 305797 + | glycerol kinase TERM 323 305829 - 305849 + F 100 -8.3 -5.79595 | opp_overlap 305824 305829 AATAATCATACAAAA GGAGCAC ATATATA GTGCTCC TTTTTTCTTTTCCGA TERM 324 305849 - 305829 - f 84 -8.3 -4.6391 | opp_overlap 305829, overlap 305824 AATAATCATACAAAA GGAGCAC ATATATA GTGCTCC TTTTTTCTTTTCCGA VFMJ11_A0272 305986 - 306753 + | glycerol-3-phosphate regulon repressor TERM 325 306778 - 306803 + F 93 -8.3 -5.4251 | opp_overlap 306778 TTGACCGATAAACGA TCCCTGTTCTT GATT GAGATCAGGGA TTTTTTATATCTGCA TERM 326 307032 - 307049 + G 71 -6.9 -4.0371 | overlap 307025 TGCAGATGCTGCTGG CCGAGGG CTAA CCGTCGG TTTATATGAAGCATC TERM 327 307247 - 307273 + G 87 -8.6 -4.55798 | overlap 307249 ATCGTCCATTTTTAC GCCCTGCATGGA TGA TCCGTGCTGGCC TTTTCCTTTACGATA TERM 328 307249 - 307271 + G 70 -9.8 -2.5893 | overlap 307247 CGTCCATTTTTACGC CCTGCATGGA TGA TCCGTGCTGG CCTTTTCCTTTACGA TERM 329 308417 - 308407 - g 81 -5.4 -5.16071 | AATGATGAAGAAAAA GCTA CAA TAGC GTCGTATATCGAAAG VFMJ11_A0273 306931 - 308454 + | aerobic glycerol-3-phosphate dehydrogenase TERM 330 308479 - 308496 + T 100 -8.4 -5.77988 | opp_overlap 308479 GTGATATAAATGAAA GCAGCC TATAAT GGCTGC TTTTTTTATGTATGT TERM 331 308496 - 308479 - T 81 -8.4 -4.18042 | opp_overlap 308479 GTGATATAAATGAAA GCAGCC TATAAT GGCTGC TTTTTTTATGTATGT VFMJ11_A0274 309623 - 308502 - | SUA5 protein VFMJ11_A0275 309850 - 310047 + | hypothetical protein TERM 332 310429 - 310439 + G 71 -6.8 -4.05678 | TAATGAAGAAGGACT GACC GCA GGTC TCTTTTATTTCAAAA VFMJ11_A0276 310136 - 311224 + | choloylglycine hydrolase TERM 333 311240 - 311264 + TF 90 -8 -5.10208 | opp_overlap 311240 TTTATTAAATAAAAA TAAGCTTCAT GCCGG GTGAAGCTTA TTTTTCTTCGACTTC TERM 334 311264 - 311240 - Tf 89 -7.3 -5.33405 | opp_overlap 311240 TTTATTAAATAAAAA TAAGCTTCA TGCCGGG TGAAGCTTA TTTTTCTTCGACTTC VFMJ11_A0277 312952 - 311246 - | sensory transduction protein kinase TERM 335 312464 - 312452 - Gf 79 -3.4 -5.42198 | opp_overlap 312459, overlap 312455 312459 GCGTAAAAAACAAAA TGAC AAATA GTCA TCACTAATTGTACTA VFMJ11_A0278 312930 - 313130 + | hypothetical protein VFMJ11_A0279 313288 - 313467 + | hypothetical protein TERM 336 313704 - 313727 + G 75 -9.6 -3.29892 | overlap 313703 313701 313699 GAATTGCTGTAAGTC GCTCAATAGG TATC CCTAATGAGC TGTCTCTTTCTTATT TERM 337 313754 - 313773 + G 73 -7.2 -4.08958 | overlap 313752 TATTCTAAGTTTGAG GAAACCGA TAAA TTGGTTTC TGTTTTATTTAATGA VFMJ11_A0280 313586 - 315442 + | methyl-accepting chemotaxis protein TERM 338 315487 - 315451 - T 100 -13.9 -4.3255 | opp_overlap 315453 315456, overlap 315452 315453 315456 TGTGTAACGAATAAA CTCAATAGGCTGTATCA ATT TGATACAGCCTATTGTT ATTTATAGAAAAAAG TERM 339 315486 - 315452 - T 100 -17.4 -3.19048 | opp_overlap 315453 315456, overlap 315451 315453 315456 GTGTAACGAATAAAC TCAATAGGCTGTATCA ATT TGATACAGCCTATTGT TATTTATAGAAAAAA TERM 340 315485 - 315453 - T 100 -20.9 -2.50947 | opp_overlap 315453 315456, overlap 315452 315451 315456 TGTAACGAATAAACT CAATAGGCTGTATCA ATT TGATACAGCCTATTG TTATTTATAGAAAAA TERM 341 315453 - 315485 + T 100 -20.9 -4.06419 | opp_overlap 315453 315452 315451 315456, overlap 315456 TGTAACGAATAAACT CAATAGGCTGTATCA ATT TGATACAGCCTATTG TTATTTATAGAAAAA TERM 342 315482 - 315456 - T 100 -16.8 -3.39434 | opp_overlap 315453 315456, overlap 315453 315452 315451 AACGAATAAACTCAA TAGGCTGTATCA ATT TGATACAGCCTA TTGTTATTTATAGAA TERM 343 315456 - 315482 + T 100 -16.8 -4.15703 | opp_overlap 315456 315453 315452 315451, overlap 315453 AACGAATAAACTCAA TAGGCTGTATCA ATT TGATACAGCCTA TTGTTATTTATAGAA VFMJ11_A0281 316649 - 315486 - | SUA5 protein TERM 344 315581 - 315594 + g 72 -3.1 -5.03314 | opp_overlap 315581 TATGATTAAAGTAAG TGGAG TGAG TTCCA TTTTTTAAAAGTGGG TERM 345 315802 - 315815 + g 71 -6.7 -4.04811 | opp_overlap 315801 GATTCTTTTACATAG GCAGA TAAT TCTGC TTTGTAATGATTTGT TERM 346 316560 - 316570 + g 81 -2.6 -5.66926 | ACATTCTGTTTCGGT TAAT TTA ATTA TTTTATTTTTTTTGG glpC 318198 - 316927 - | glycerol-3-phosphate dehydrogenase, anaerobic, C subunit TERM 347 318038 - 318052 + g 81 -5.6 -5.13722 | CCGCATTGTTTTGGC CCCGGA TAA TCAGGG TTTTCTTTTGCTACA glpB 319562 - 318195 - | glycerol-3-phosphate dehydrogenase, anaerobic, B subunit TERM 348 318736 - 318748 + g 80 -7.7 -4.31433 | opp_overlap 318736 318735 CCTAATTCAATAAAT GCATG TTT CATGC TTTCTTCTAAGCGTA TERM 349 319400 - 319411 + g 73 -5.8 -4.60041 | opp_overlap 319394 GGTTAGAAACAGGTT CACC TGAA GGTG TTTTTGCAAGTACAT glpA 321211 - 319559 - | glycerol-3-phosphate dehydrogenase, anaerobic, A subunit TERM 350 320002 - 320016 + g 85 -2.8 -5.78622 | overlap 320003 320004 TTTGGTAAACGGGTT TTGCAA GAC TTGCGG TTTTTTTTGCGGTAA TERM 351 321455 - 321439 - H 73 -9.5 -2.80821 | TTTGTAAAGATACGA TCTGGTT CAA AACCAGA ATAAAAGTGGTGATA VFMJ11_A0285 321507 - 325670 + | putative formate dehydrogenase TERM 352 325728 - 325690 - T 100 -16.3 -4.36127 | opp_overlap 325695, overlap 325695 TGTAATAACGTAAAA TAAAATGCCCGATGATT TGAGT AATCATCGGGCATTTTT TATGTTTAGAAATAG TERM 353 325723 - 325695 - T 100 -16.2 -5.13343 | opp_overlap 325695, overlap 325690 TAACGTAAAATAAAA TGCCCGATGATT TGAGT AATCATCGGGCA TTTTTTATGTTTAGA TERM 354 325695 - 325723 + T 100 -16.2 -5.56264 | opp_overlap 325695 325690 TAACGTAAAATAAAA TGCCCGATGATT TGAGT AATCATCGGGCA TTTTTTATGTTTAGA pepT_2 326982 - 325753 - | peptidase T TERM 355 327109 - 327075 - R 70 -8 -3.21785 | opp_overlap 327075, overlap 327074 TCATAAAAAGCAAAG TGGTTAGCGCATAC TAAAAAC ATATGCGCTAACTA TAAATTATTACTTGT TERM 356 327075 - 327109 + r 72 -9.5 -2.69288 | opp_overlap 327074 327075 TCATAAAAAGCAAAG TGGTTAGCGCATA CTAAAAACA TATGCGCTAACTA TAAATTATTACTTGT VFMJ11_A0287 327497 - 327117 - | hypothetical protein TERM 357 327728 - 327761 + H 89 -10.7 -3.58208 | opp_overlap 327733, overlap 327731 CTAGATGTTGCGTGT TAAGATAAAAGTAAA TTAA TTTATTTTTATCTTA TTGATTATTATCCAA TERM 358 327731 - 327758 + H 79 -8 -3.91564 | opp_overlap 327733, overlap 327728 GATGTTGCGTGTTAA GATAAAAGTAAA TTAA TTTATTTTTATC TTATTGATTATTATC VFMJ11_A0288 328049 - 328837 + | transcriptional regulator, AraC family VFMJ11_A0289 329033 - 328842 - | hypothetical protein VFMJ11_A0290 329223 - 329474 + | hypothetical protein VFMJ11_A0291 329582 - 330937 + | ggdef family protein TERM 359 330966 - 330940 - T 73 -8.8 -3.16813 | opp_overlap 330942, overlap 330939 330942 TAATGATCAATAAAG CAGCCATTTCCA ATA TGAAAATGGCTT TTAATTAGAGACTAA TERM 360 330942 - 330964 + T 93 -9.2 -4.41047 | opp_overlap 330940 330939 330942 ATGATCAATAAAGCA GCCATTTCCA ATA TGAAAATGGC TTTTAATTAGAGACT TERM 361 330964 - 330942 - T 84 -11.4 -3.13344 | opp_overlap 330942, overlap 330940 330939 ATGATCAATAAAGCA GCCATTTCCA ATA TGAAAATGGC TTTTAATTAGAGACT VFMJ11_A0292 331531 - 330971 - | malate synthase TERM 362 332001 - 332014 + G 73 -2.4 -5.32882 | overlap 331991 AAGTGGTATGGTTCT GGAA CCAAGC TTCC TTTTTTCTAATGATA TERM 363 332524 - 332540 + G 82 -3.7 -5.52384 | overlap 332515 332526 ATACTGCATGCGTGG CGTGATT TTG AATCAAG TTTTTTTGCTGGAGC VFMJ11_A0293 331690 - 333192 + | transcriptional regulator, MerR family TERM 364 333220 - 333193 - T 77 -10 -3.01125 | opp_overlap 333193, overlap 333190 333195 ACGTGTTATAAATGA TAGCCGTTAATT ATTG ATTTAACGGCTA TTTTTTATTTTAGTT TERM 365 333193 - 333220 + T 100 -10 -5.85244 | opp_overlap 333193 333190 333195 ACGTGTTATAAATGA TAGCCGTTAATT ATTG ATTTAACGGCTA TTTTTTATTTTAGTT VFMJ11_A0294 334339 - 333230 - | hypothetical transcriptional regulatory protein TERM 366 333889 - 333912 + g 76 -2.4 -5.51612 | TTGGTACCGATTCTT CTAAAGTTAC TTCT GTTACTTTTG TTTTGTTTTTTGTAT TERM 367 334092 - 334102 + g 82 -4 -5.42259 | opp_overlap 334092 ATTAGGTAAATATCA TTAC TAT GTAA TTTTTTTCGCAGTAC TERM 368 334234 - 334252 + g 72 -4.6 -4.78237 | overlap 334235 GTAATTTTAAAATTT TTGATTCA CTA TGAGTCAG TTTTATTGTGCAATC TERM 369 334693 - 334740 + r 95 -12.4 -3.74526 | opp_overlap 334691 334695 TTAATTAAGTTAATG GAGTGGTACTTATACTTTTAAT CAAT ATAAAAAATATAAGTACTACTC TTATTCGATTACTGA TERM 370 334738 - 334695 - R 72 -9.2 -2.57757 | opp_overlap 334693, overlap 334691 AATTAAGTTAATGGA GTGGTACTTATACTTTTAAT CAAT ATAAAAAATATAAGTACTAC TCTTATTCGATTACT VFMJ11_A0295 336682 - 334766 - | glutathione-regulated potassium-efflux system protein KefC (K+/H+ antiporter) VFMJ11_A0296 337307 - 336690 - | general stress protein 14 VFMJ11_A0297 337752 - 337423 - | quaternary ammonium compound-resistance protein QacE TERM 371 337877 - 337907 + r 74 -6.2 -4.57341 | opp_overlap 337877, overlap 337878 337880 GGGGGAGGAAGAGGA GTCGGCTCAATATT AAT GATATTGAGCCTAA TTTTTAGAAGAAGTT TERM 372 337878 - 337906 + r 81 -9.7 -3.33922 | opp_overlap 337877, overlap 337877 337880 GGGGAGGAAGAGGAG TCGGCTCAATATT AAT GATATTGAGCCTA ATTTTTAGAAGAAGT TERM 373 337880 - 337904 + r 91 -12.3 -3.23708 | opp_overlap 337877, overlap 337878 337877 GGAGGAAGAGGAGTC GGCTCAATATT AAT GATATTGAGCC TAATTTTTAGAAGAA VFMJ11_A0298 338318 - 337911 - | hypothetical protein TERM 374 337943 - 337970 + g 100 -4.8 -5.84011 | overlap 337949 AGCGACGACCACTCT CTGGATCAACCG TAGT TGGTTGTTCTGG TTTTTGTTTTTTCTT TERM 375 338417 - 338438 + r 86 -8 -4.65747 | opp_overlap 338417 TTAGTAAAGTAAAAA CGGTGCTG TATTAT TAGCACCG TTTTATTAAGAGTTA TERM 376 338438 - 338417 - R 88 -7.3 -5.01811 | opp_overlap 338417 TTAGTAAAGTAAAAA CGGTGCT GTATTATT AGCACCG TTTTATTAAGAGTTA VFMJ11_A0299 339599 - 338451 - | oxidoreductase VFMJ11_A0300 340929 - 339673 - | sensory transduction protein kinase VFMJ11_A0301 341581 - 340904 - | ColR VFMJ11_A0302 341651 - 342532 + | lipoprotein, putative TERM 377 342579 - 342546 - f 83 -11.2 -2.78776 | opp_overlap 342551, overlap 342551 AATTTGTGAAAATAT TAAAACCACTGACT TTCATG AGTCAGTGGTTTTT TTGTTTTTGTAGGTA TERM 378 342574 - 342551 - f 100 -11.1 -4.55826 | opp_overlap 342551, overlap 342546 GTGAAAATATTAAAA CCACTGACT TTCATG AGTCAGTGG TTTTTTTGTTTTTGT TERM 379 342551 - 342574 + F 100 -11.8 -6.23317 | opp_overlap 342551 342546 GTGAAAATATTAAAA CCACTGACTT TCAT GAGTCAGTGG TTTTTTTGTTTTTGT VFMJ11_A0303 342676 - 343584 + | inner membrane protein YedI VFMJ11_A0304 343961 - 343587 - | lipoprotein, putative TERM 380 345119 - 345094 - g 70 -9.8 -2.71765 | gap 1, overlap 345093 ATAGTGCAAATCAAT GGCTGCGA-GA ATTGA TCATCGCAGCC GAAAGAGATTAAACC VFMJ11_A0305 344226 - 345131 + | transcriptional regulator VFMJ11_A0306 346152 - 345142 - | integral membrane protein TERM 381 346148 - 346138 - G 89 -5.4 -5.40004 | TAGTAAATCAAAAAA GAAG ACT CTTC CCATAATATTCCATC TERM 382 347246 - 347231 - g 73 -5.4 -4.59069 | ACGACAAGCACAAAA TGGAGA AATA CCTCCA ACGATTACAGCAAGC VFMJ11_A0307 346395 - 347354 + | elastase 2 TERM 383 347399 - 347369 - T 82 -9.9 -3.67877 | opp_overlap 347374, overlap 347374 ATGTTGGAATAAATA GAAAAGGCATAGT ATTCG ACTATGCCTTTTT AGTATTAAGAATGCT TERM 384 347374 - 347394 + T 100 -9.8 -4.87626 | opp_overlap 347374 347369 GGAATAAATAGAAAA GGCATAGT ATTCG ACTATGCC TTTTTAGTATTAAGA TERM 385 347394 - 347374 - T 100 -9.8 -4.89838 | opp_overlap 347374, overlap 347369 GGAATAAATAGAAAA GGCATAGT ATTCG ACTATGCC TTTTTAGTATTAAGA VFMJ11_A0308 348541 - 347414 - | acyl-CoA desaturase VFMJ11_A0309 348674 - 348910 + | hypothetical protein VFMJ11_A0310 350155 - 348920 - | sensory transduction/ ggdef family protein TERM 386 350384 - 350363 - R 77 -3 -5.4492 | opp_overlap 350378, overlap 350356 350354 GACAGATACAAAAAA GGCATCAT TTTTCG ACAATGCC TTCGTTGTATTGGCG TERM 387 350562 - 350597 + r 100 -17.8 -3.01712 | opp_overlap 350562 350565 350569, overlap 350565 350569 CATTTTCGACAGATA CAACAAAGGCATCGTC TTTC GACAATGCCTTTGTTG TGTTGGCGGAGCGGA TERM 388 350597 - 350562 - R 100 -20 -2.9914 | opp_overlap 350562 350565 350569, overlap 350565 350569 CATTTTCGACAGATA CAACAAAGGCATCGTC TTTC GACAATGCCTTTGTTG TGTTGGCGGAGCGGA TERM 389 350594 - 350565 - R 100 -15.9 -3.64198 | opp_overlap 350562 350565 350569, overlap 350562 350569 TTTCGACAGATACAA CAAAGGCATCGTC TTTC GACAATGCCTTTG TTGTGTTGGCGGAGC TERM 390 350565 - 350594 + r 100 -13.7 -3.65812 | opp_overlap 350565 350562 350569, overlap 350562 350569 TTTCGACAGATACAA CAAAGGCATCGTC TTTC GACAATGCCTTTG TTGTGTTGGCGGAGC TERM 391 350569 - 350590 + r 89 -8.7 -4.46073 | opp_overlap 350565 350562 350569, overlap 350565 350562 GACAGATACAACAAA GGCATCGTC TTTC GACAATGCC TTTGTTGTGTTGGCG TERM 392 350590 - 350569 - R 100 -10.9 -4.4458 | opp_overlap 350569 350565 350562, overlap 350565 350562 GACAGATACAACAAA GGCATCGTC TTTC GACAATGCC TTTGTTGTGTTGGCG TERM 393 350805 - 350766 - R 89 -13.8 -2.87931 | opp_overlap 350775, overlap 350768 350775 TTCATTTTCGACAGA TACAAAAAAGGCATCGTC TTTC GACAATGCCTTCGTTGTA GTGGCGGAGCGGACG TERM 394 350803 - 350768 - R 85 -12 -2.9914 | opp_overlap 350775, overlap 350766 350775 CATTTTCGACAGATA CAAAAAAGGCATCGTC TTTC GACAATGCCTTCGTTG TAGTGGCGGAGCGGA TERM 395 350775 - 350796 + r 75 -8.7 -3.47322 | opp_overlap 350775 350768 350766 GACAGATACAAAAAA GGCATCGTC TTTC GACAATGCC TTCGTTGTAGTGGCG TERM 396 350796 - 350775 - R 100 -10.9 -5.4492 | opp_overlap 350775, overlap 350768 350766 GACAGATACAAAAAA GGCATCGTC TTTC GACAATGCC TTCGTTGTAGTGGCG VFMJ11_A0313 351593 - 351096 - | hypothetical protein TERM 397 351726 - 351705 - R 100 -10.9 -5.5762 | AGCAAATATAAAAAA GGCGATAAC TATC GCTATCGCC TTAAGAGTTTTTTTA VFMJ11_A0314 352695 - 351739 - | tellurium resistance protein TerC TERM 398 352902 - 352923 + H 70 -7.3 -3.71527 | opp_overlap 352904 TGACTACTCCCCAAT GATCTGGAT AGTA ATCCCGATC TTTAAATAATTCAAA TERM 399 353213 - 353187 - g 90 -5.2 -5.65678 | opp_overlap 353192 AGAAAATAGAAAAAA GAAAAGAGCT TGAAGAG AGCTCTTATC GTCGTGCGCTTGCAG VFMJ11_A0315 353084 - 354253 + | FOG: TPR repeat protein, SEL1 subfamily TERM 400 354259 - 354299 + T 100 -19.3 -3.72576 | opp_overlap 354270, overlap 354270 GAAGTTTTAATTCTC CATATGTAAAAGGAGCGCA AGG TGCGCTCCTTTTTTATATG TTTAATAAAAGAGAG TERM 401 354288 - 354270 - T 100 -14.6 -4.2349 | opp_overlap 354259 354270 TCTCCATATGTAAAA GGAGCGCA AGG TGCGCTCC TTTTTTATATGTTTA TERM 402 354270 - 354288 + T 100 -14.6 -5.51046 | opp_overlap 354270, overlap 354259 TCTCCATATGTAAAA GGAGCGCA AGG TGCGCTCC TTTTTTATATGTTTA VFMJ11_A0316 355286 - 354315 - | metal-dependent hydrolase nrdD 355449 - 357569 + | anaerobic ribonucleoside-triphosphate reductase TERM 403 357607 - 357635 + G 70 -8.1 -3.69354 | opp_overlap 357607 357611, overlap 357608 357613 357628 AATTGATGTGATTAA TGGACCGGGTACG CGT TGTACCCTGTTCG TTTCAGGTTGTGAGC TERM 404 357608 - 357634 + G 71 -9.4 -2.81291 | opp_overlap 357607 357611, overlap 357607 357613 357628 ATTGATGTGATTAAT GGACCGGGTACG CGT TGTACCCTGTTC GTTTCAGGTTGTGAG TERM 405 357613 - 357629 + G 70 -8.7 -3.34267 | opp_overlap 357611 357607, overlap 357608 357607 357628 TGTGATTAATGGACC GGGTACG CGT TGTACCC TGTTCGTTTCAGGTT nrdG 357569 - 358039 + | anaerobic ribonucleoside-triphosphate reductase activating protein VFMJ11_A0319 358130 - 359317 + | aromatic-amino-acid aminotransferase TERM 406 359799 - 359778 - g 70 -3.1 -4.93365 | gap 1, overlap 359782 359783 GCTCATAATGAAAAA GAAAC-CAAA GAG TTTGAGTCTC CTGTATCTCGTATCG VFMJ11_A0320 359382 - 360032 + | ATP-dependent Zn protease TERM 407 360045 - 360021 - T 70 -7.3 -3.8698 | opp_overlap 360015 360011 CAACCTAAAGTGAAA GTAGAGAAATA ACG TATTTTTCTAC TGATACATTATTAAT TERM 408 360095 - 360056 - T 89 -13.8 -2.7035 | opp_overlap 360066, overlap 360066 TCTACTGATACATTA TTAATAAAAACGCCCACA ATTA TGTGGGCGTTTTTATTTT GCCATATCTAAAAGA TERM 409 360066 - 360085 + T 100 -13.6 -5.46706 | opp_overlap 360056 360066 CATTATTAATAAAAA CGCCCACA ATTA TGTGGGCG TTTTTATTTTGCCAT TERM 410 360085 - 360066 - T 100 -13.6 -5.15167 | opp_overlap 360066, overlap 360056 CATTATTAATAAAAA CGCCCACA ATTA TGTGGGCG TTTTTATTTTGCCAT VFMJ11_A0321 360249 - 360103 - | amino-acid abc transporter binding protein VFMJ11_A0322 361456 - 360251 - | amino-acid abc transporter binding protein VFMJ11_A0323 362980 - 361547 - | amino-acid abc transporter binding protein TERM 411 362228 - 362240 + g 78 -2.7 -5.5112 | ATTTACGACATTAGT TAGTT GAG GACTA TTTTTTCTTACTGCC TERM 412 363214 - 363188 - R 87 -12.4 -3.01712 | opp_overlap 363179 363191, overlap 363191 TTTGCTTGGTGAATA TAAGTCAGCGAG TTT CTTGCTGACTTA TATAGATGGTTATGT TERM 413 363191 - 363211 + r 91 -11.9 -3.5361 | opp_overlap 363188 363191, overlap 363179 GCTTGGTGAATATAA GTCAGCGAG TTT CTTGCTGAC TTATATAGATGGTTA TERM 414 363211 - 363191 - R 82 -9.7 -3.65812 | opp_overlap 363191 363179, overlap 363188 GCTTGGTGAATATAA GTCAGCGAG TTT CTTGCTGAC TTATATAGATGGTTA VFMJ11_A0324 363783 - 363244 - | hypothetical protein TERM 415 363841 - 363825 - R 100 -9.4 -5.28176 | opp_overlap 363823 TTTATCTATAAAAAA GCCTGC AAAAA GCAGGC CAGTTTATAAGGAGA VFMJ11_A0325 364244 - 363864 - | protein YgiW cobQ 364450 - 365937 + | cobyric acid synthase CobQ TERM 416 366339 - 366315 - g 70 -2.9 -5.06414 | TTTGTTCAACAAAAA GATCTGC GTCTTTCTATG GCAGATC CTAGGCATGTTCCAG modA 365949 - 366686 + | molybdate ABC transporter, periplasmic molybdate-binding protein modB 366683 - 367372 + | molybdate ABC transporter, permease protein TERM 417 367880 - 367867 - g 73 -6.7 -4.26202 | opp_overlap 367866 367867 AGATCTACCAAGAAA GCATG AAGT CATGC CTTATTTAGAGCGCC modC 367376 - 368470 + | molybdate ABC transporter, ATP-binding protein VFMJ11_A0330 368481 - 369167 + | HAD superfamily (subfamily IA) hydrolase TERM 418 369177 - 369202 + T 100 -10.5 -5.31091 | gap 1, opp_overlap 369177 TCGTGATATAAGAAA GCCCCTA-GAGT GTA GCTCCTAGGGGC TTTTATTTTATTATA TERM 419 369202 - 369177 - T 100 -9.8 -4.38927 | gap 1, opp_overlap 369177 TCGTGATATAAGAAA GCCCCTA-GAG TGTAG CTCCTAGGGGC TTTTATTTTATTATA VFMJ11_A0331 369409 - 369233 - | hypothetical protein VFMJ11_A0332 369932 - 369414 - | nucleoprotein/polynucleotide-associated enzyme TERM 420 369704 - 369734 + g 79 -4.8 -5.02231 | overlap 369707 CAATTTTGTTTACGC TAATTAGTTGCTTA ATT TGAGCGGCTAATTC TTTTTGCTCTTTTTC TERM 421 369707 - 369731 + g 77 -6.5 -4.54753 | overlap 369704 TTTTGTTTACGCTAA TTAGTTGCTTA ATT TGAGCGGCTAA TTCTTTTTGCTCTTT VFMJ11_A0333 370016 - 370324 + | hypothetical protein torE 370657 - 370833 + | trimethylamine N-oxide reductase system, TorE protein torC 370891 - 372069 + | trimethylamine-N-oxide reductase c-type cytochrome TorC TERM 422 372417 - 372393 - g 81 -5.8 -5.0133 | gap 1, opp_overlap 372416 GATTGGTTGAAAAAA CACAAGTACTC AGCT GAG-ACTCGTG GTAACAACCGTTTTA TERM 423 374126 - 374112 - g 71 -6.4 -4.15044 | CCTGGTTCTAAGAAA CACCCA TTC TGGATG CAATCTTGTCACCCT torA 372093 - 374555 + | trimethylamine-N-oxide reductase TorA TERM 424 374603 - 374575 - f 84 -11.9 -2.83692 | opp_overlap 374581, overlap 374581 AATAATAAATAATAT TAAAAAGCACCTA ATT TAGGTGCTTTTTT TATATATATAATTCA TERM 425 374597 - 374581 - f 100 -10.9 -4.94672 | opp_overlap 374581, overlap 374575 AAATAATATTAAAAA GCACCTA ATT TAGGTGC TTTTTTTATATATAT TERM 426 374581 - 374597 + F 100 -10.9 -5.77988 | opp_overlap 374581 374575 AAATAATATTAAAAA GCACCTA ATT TAGGTGC TTTTTTTATATATAT VFMJ11_A0337 374793 - 376778 + | methyl-accepting chemotaxis protein VFMJ11_A0338 376847 - 376963 + | hypothetical protein TERM 427 377966 - 377944 - g 73 -10 -2.85574 | overlap 377943 CTAATGGTATCAAAG CGCTTTTACA AGA TATAAAAGCG AAAGGAAAGAAACCG TERM 428 378106 - 378118 + G 72 -9.1 -3.35278 | TTACTTATGGCGGTT GGCGT TGT ACGCC TTGGTATATCCTTGA VFMJ11_A0339 377175 - 378914 + | alpha-galactosidase TERM 429 378940 - 378970 + F 85 -6.3 -5.28176 | opp_overlap 378940 378938 AGAAATCAGAAATTA GACAGGTGTAA TCTTTAAAT TTACACTTGTC TTTTTTATGCCTAAA TERM 430 381032 - 381017 - g 74 -4.7 -4.85545 | opp_overlap 381017 381031 ATGAAATGAATAAAA TCAGC TCTAAC GCTGA TAGGTTATCTGAGTT VFMJ11_A0340 379225 - 381111 + | methyl-accepting chemotaxis protein TERM 431 381149 - 381123 - g 91 -2.2 -6.10295 | opp_overlap 381125 381147, overlap 381125 381127 GTAATACAAAAAAAA CAGGCGATTCTC AGA AAGAAGCGTCTA TTTCTAATGGTTTAA VFMJ11_A0341 381101 - 381247 + | hypothetical protein TERM 432 381258 - 381289 + T 83 -11.7 -2.77781 | opp_overlap 381258 381259, overlap 381255 381254 381265 AATAAGTAAACTAAA TGCCATAGCAGCA AAGGTA TGCTGCTATGGTG TGCCTTTTAATAAAA TERM 433 381289 - 381258 - T 75 -7.3 -4.17109 | opp_overlap 381258 381255 381254 381265, overlap 381259 AATAAGTAAACTAAA TGCCATAGCAGCA AAGGTA TGCTGCTATGGTG TGCCTTTTAATAAAA TERM 434 381288 - 381259 - T 83 -10.8 -3.08638 | opp_overlap 381258 381255 381254 381265, overlap 381258 ATAAGTAAACTAAAT GCCATAGCAGCA AAGGTA TGCTGCTATGGT GTGCCTTTTAATAAA VFMJ11_A0342 382423 - 381296 - | transcriptional regulatory protein, C TERM 435 382345 - 382391 + g 100 -14.8 -4.43272 | opp_overlap 382363, overlap 382292 382350 TTTTTATTTCTTCTT TAGTACTATTGATTACAACAGT TAA ACTGCTGTAATCAATAGTGATA TTTTGGGTTTTAACT TERM 436 382350 - 382386 + g 100 -16.9 -2.96755 | opp_overlap 382363, overlap 382345 ATTTCTTCTTTAGTA CTATTGATTACAACAGT TAA ACTGCTGTAATCAATAG TGATATTTTGGGTTT TERM 437 382456 - 382471 + r 76 -6.8 -4.57755 | overlap 382454 CGATTTTTGGTGTCG CAGCGC TGAT GCGTTG TTTTCTATCGTGAGT VFMJ11_A0343 383257 - 382433 - | glutathione import ATP-binding protein GsiA VFMJ11_A0344 384254 - 383241 - | peptide transport system ATP-binding protein SapD VFMJ11_A0345 385141 - 384254 - | peptide transport system permease protein SapC VFMJ11_A0346 386090 - 385128 - | peptide transport system permease protein SapB VFMJ11_A0347 387715 - 386090 - | peptide transport periplasmic protein SapA pspF 388812 - 387793 - | psp operon transcriptional activator TERM 438 388526 - 388511 - G 82 -6 -4.89063 | overlap 388513 TCATCTAAAAATAAA GAGCCG CCAT CGGCAC GTTCAAATCGACCTT TERM 439 388524 - 388513 - G 73 -7.2 -4.05491 | overlap 388511 ATCTAAAAATAAAGA GCCG CCAT CGGC ACGTTCAAATCGACC TERM 440 389084 - 389070 - g 80 -4.3 -5.35222 | AAAATCCAGAAAAAA TGATC CGTTT GATCA TTCAAGAGATGGAAG TERM 441 389220 - 389210 - g 73 -6.8 -4.19624 | opp_overlap 389209 389210 GATTGGCAAGATAAA GCCA GTT TGGC ATTACTTAAACAAAG pspA 388988 - 389653 + | phage shock protein A pspB 389717 - 389941 + | phage shock protein B TERM 442 390197 - 390180 - g 70 -2.6 -5.08169 | ACATACCGTAAAAAA CAAGCC ATGGCA GGCTGG GCAATCTGCATCAGA pspC 389941 - 390327 + | phage shock protein C TERM 443 390358 - 390391 + F 79 -8.2 -4.06678 | overlap 390359 AGTAATACCTTGTTC ATGGAGTGTTCAGA TTAGGT TCTGTACACTCCAC TTTGTATGAATGAAT TERM 444 390359 - 390390 + F 84 -11.7 -3.03525 | overlap 390358 GTAATACCTTGTTCA TGGAGTGTTCAGA TTAGGT TCTGTACACTCCA CTTTGTATGAATGAA VFMJ11_A0352 390423 - 391820 + | amino acid regulated cytosolic protein VFMJ11_A0353 391817 - 392842 + | hypothetical protein TERM 445 393636 - 393618 - g 72 -3.1 -5.07107 | CAAAGTGCCAAAAAA TGAAGTC GAAAT GACTGCA ATGATCAATCAACTT thiD 393103 - 393981 + | phosphomethylpyrimidine kinase VFMJ11_A0355 393974 - 394720 + | hydroxymethylpyrimidine transport ATP-binding protein VFMJ11_A0356 394713 - 395531 + | hydroxymethylpyrimidine transport system permease protein VFMJ11_A0357 395559 - 396506 + | putative thiamine biosynthesis protein TERM 446 396608 - 396629 + G 71 -3.8 -4.8384 | TCAGCAATTAGCACT TGGTGAAT TAGCAC ATTCATCA TTTTTACATTATTTA VFMJ11_A0358 396525 - 397187 + | TENA/THI-4 family protein thiM 397229 - 398023 + | hydroxyethylthiazole kinase TERM 447 398231 - 398211 - g 71 -4.8 -4.56802 | gap 1, overlap 398213 AAAGAAATACTAAAA GA-TAGTGG TGTA CCACTAATC ATAAACGATCGTGTT TERM 448 398228 - 398213 - g 71 -7.6 -3.86037 | overlap 398211 AGAAATACTAAAAGA TAGTGG TGTA CCACTA ATCATAAACGATCGT thiE_1 398034 - 398672 + | thiamine-phosphate pyrophosphorylase TERM 449 398691 - 398710 + T 91 -5.7 -5.94597 | opp_overlap 398691 AATTATATAGAATCA GAGCACT TTTTTT GGTGCTC TTTTTTTTGCTCTTC VFMJ11_A0361 399484 - 398678 - | sensory box/ggdef family protein TERM 450 399622 - 399598 - R 79 -3.6 -5.48623 | gap 1, opp_overlap 399598 AAATATAAAGAAAAA GCTGC-GATTA GAAA TAAACAGCAGC TTTTTGAGTGGGTAT VFMJ11_A0362 400964 - 399678 - | thiol:disulfide interchange protein DsbD VFMJ11_A0363 401666 - 403327 + | methyl-accepting chemotaxis protein TERM 451 403382 - 403348 - T 73 -8.8 -3.23532 | opp_overlap 403353, overlap 403353 ACGTAAATTAATACA TAAAAGCACAAGAT TGATGAG ATCTTGTGCTTTTT TATTACCATAATTTA TERM 452 403377 - 403353 - T 93 -8.7 -4.70453 | opp_overlap 403353, overlap 403348 AATTAATACATAAAA GCACAAGAT TGATGAG ATCTTGTGC TTTTTTATTACCATA TERM 453 403353 - 403377 + T 100 -9.4 -5.46657 | opp_overlap 403353 403348 AATTAATACATAAAA GCACAAGATT GATGA GATCTTGTGC TTTTTTATTACCATA VFMJ11_A0364 404083 - 403385 - | hypothetical protein VFMJ11_A0365 404140 - 404310 + | hypothetical protein TERM 454 404371 - 404342 - T 80 -2.7 -5.62288 | opp_overlap 404343 404344, overlap 404343 404344 TGAATAAAATAAAAA TCCCCCCTTGATA GCAA TATCGTGGGGGAT TTTTGATTCTATACA TERM 455 404343 - 404370 + T 81 -6.2 -4.96646 | opp_overlap 404342 404343 404344, overlap 404344 GAATAAAATAAAAAT CCCCCCTTGATA GCAA TATCGTGGGGGA TTTTTGATTCTATAC TERM 456 404344 - 404369 + T 82 -9.7 -3.56903 | opp_overlap 404344 404343 404342, overlap 404343 AATAAAATAAAAATC CCCCCTTGATA GCAA TATCGTGGGGG ATTTTTGATTCTATA TERM 457 404410 - 404431 + T 73 -4.5 -4.93333 | opp_overlap 404410 ATGAAAACAAGAGAT TAACTGTTT TTAT ATACAGTTA TTTTCTGTTTTGGTT VFMJ11_A0366 405145 - 404477 - | inner membrane lipoprotein YiaD TERM 458 405258 - 405288 + r 87 -11.3 -3.29958 | opp_overlap 405249 405257 405256, overlap 405256 405250 AATAACGTGATAAGT GTCACCTTAAATC CAACA GAATTAAGGTGAC TGTTAGTATTATTGA VFMJ11_A0367 405857 - 405297 - | hypothetical protein VFMJ11_A0368 407362 - 405860 - | lipoprotein, putative TERM 459 406463 - 406441 - G 79 -9.8 -3.71848 | opp_overlap 406451 TTCGCTCATCAAGAA CGCAGCGCCA TCG TGACGCTGAG TCACCAAGTTTATTT VFMJ11_A0369 409670 - 407391 - | proprotein convertase P-domain TERM 460 409061 - 409087 + g 79 -9.6 -3.63782 | GGTTACTTGATGTTT TTGGTGTGATTA AAC TAATCGCATCAA TTTGACGTACTCTTG VFMJ11_A0370 411815 - 409680 - | hemin receptor TERM 461 410469 - 410481 + g 76 -3.4 -5.33985 | opp_overlap 410469 AGAAACACTAGGAGA TAGC TCACT GCTA TTTATTTTTTTTACA VFMJ11_A0371 413835 - 411832 - | protease II TERM 462 412647 - 412619 - G 71 -7 -4.03234 | gap 1, opp_overlap 412623 412625, overlap 412622 TCTGTTGCATACAAA GAAGCATCAATAT TTGG ATATTGAT-CTTC TAAGTACAACGCTCT TERM 463 414066 - 414039 - R 71 -8.6 -3.11634 | opp_overlap 414038 414039 CTTCAGAGGAGGGAA GCATACAGTT ATTACTTA AACTGTATGC ATTAATATTATTTTT VFMJ11_A0372 414541 - 414074 - | transcriptional regulator, MarR family TERM 464 414171 - 414160 - G 80 -4.4 -5.24129 | GGCTTTTACAAAAAA TACC ATTA GGTA CAGATAGAGCTTTAT TERM 465 414625 - 414649 + H 70 -2.1 -5.31456 | CTGAATGAAATTGAA TTGCGCGCAAT CTA ATTGTTGGCAA TTTTTTATAGATTAA VFMJ11_A0373 414693 - 415115 + | osmotically inducible protein C VFMJ11_A0374 415134 - 415529 + | hypothetical membrane spanning protein TERM 466 415549 - 415588 + T 81 -9.6 -3.38584 | opp_overlap 415557, overlap 415557 ACGTGAGTAGCACAA TGAAGAAAGGGATATG AAATTAAC CATATCCCTTTTTTTA TTAATTAGCTAATGT TERM 467 415580 - 415557 - T 81 -7.5 -4.37199 | opp_overlap 415549 415557 AGCACAATGAAGAAA GGGATATGA AATTAA CCATATCCC TTTTTTTATTAATTA TERM 468 415557 - 415580 + T 95 -6.8 -5.87996 | opp_overlap 415557, overlap 415549 AGCACAATGAAGAAA GGGATATG AAATTAAC CATATCCC TTTTTTTATTAATTA VFMJ11_A0375 417989 - 415611 - | lipoprotein, putative TERM 469 417079 - 417092 + g 70 -3.1 -4.89339 | GCTGGTGTTGCGTTA GGGTT TGTT AATCC TTTTTCTAGATAATT VFMJ11_A0376 419115 - 418120 - | probable transcriptional regulator SyrB TERM 470 419409 - 419440 + r 79 -10.3 -2.84325 | opp_overlap 419414, overlap 419414 TAGATTAATCGAATA AAAAAGGCACTGA ATATTA TCAGTGCCTTTTG TCATATTTAGGGGAA TERM 471 419414 - 419435 + r 100 -10.2 -4.58303 | opp_overlap 419414, overlap 419409 TAATCGAATAAAAAA GGCACTGA ATATTA TCAGTGCC TTTTGTCATATTTAG TERM 472 419435 - 419414 - R 100 -10.2 -5.5074 | opp_overlap 419414 419409 TAATCGAATAAAAAA GGCACTGA ATATTA TCAGTGCC TTTTGTCATATTTAG VFMJ11_A0377 420903 - 419479 - | amino acid permease TERM 473 420998 - 420952 - H 87 -12.8 -3.05596 | opp_overlap 420957 420958, overlap 420957 420982 TATTTTTGTATGTAA GGTAACTTTTAGTAAAATTA TAGTAAT TAATTTTACTAAAAGTTACT GTGAGATGTGTCATT TERM 474 420957 - 420993 + H 87 -11.3 -3.27498 | opp_overlap 420952 420957 420982, overlap 420958 TTGTATGTAAGGTAA CTTTTAGTAAAATTA TAGTAAT TAATTTTACTAAAAG TTACTGTGAGATGTG TERM 475 420993 - 420957 - H 87 -11.3 -3.19192 | opp_overlap 420957 420958, overlap 420952 420982 TTGTATGTAAGGTAA CTTTTAGTAAAATTA TAGTAAT TAATTTTACTAAAAG TTACTGTGAGATGTG TERM 476 422364 - 422376 + G 70 -5.5 -4.37863 | TTATTGTTTTCTTTG CCGCA TTA TGTGG TTATTATTTTTATGT TERM 477 422810 - 422796 - g 93 -10 -5.11063 | opp_overlap 422796 422798 ATGAGGTAATAAAAA GAGCTG ATG CAGCTC TCTATGATTCTAAGA TERM 478 422796 - 422810 + G 75 -10 -3.03474 | opp_overlap 422796, overlap 422798 ATGAGGTAATAAAAA GAGCTG ATG CAGCTC TCTATGATTCTAAGA VFMJ11_A0378 421544 - 422878 + | sensory transduction protein kinase TERM 479 423029 - 423009 - g 70 -5.5 -4.33755 | AGTAACATCAATAAA CTTTATGAT ACT ATCAGAAAG ATAACACCATATTAT VFMJ11_A0379 422982 - 424193 + | sensory transduction protein kinase VFMJ11_A0380 424199 - 425629 + | sensory transduction protein kinase TERM 480 425662 - 425638 - T 86 -5.8 -5.48213 | opp_overlap 425638 TAGTTAAAACAAAAA GGGGAATAAA TGATG TTTATTCTCC TTTTTCTTTATTCTT TERM 481 425638 - 425662 + T 95 -8.7 -5.52807 | opp_overlap 425638 TAGTTAAAACAAAAA GGGGAATAAAT GAT GTTTATTCTCC TTTTTCTTTATTCTT VFMJ11_A0381 428603 - 425703 - | metal dependent phosphohydrolase TERM 482 426825 - 426851 + g 70 -3 -5.1417 | overlap 426824 GATCGCACTGGCCAT GACTTGAATGAA TGA TTCAAGTAAGTC TTTTTGGTTTTGTAA TERM 483 428657 - 428681 + r 90 -11.5 -3.67296 | opp_overlap 428657 TGATAAATAGAAAAA GATCCGAGAAT ATT ATTCACGGATC TTTAGGTGGGTGCTA TERM 484 428681 - 428657 - R 100 -11.5 -5.24799 | opp_overlap 428657 TGATAAATAGAAAAA GATCCGAGAAT ATT ATTCACGGATC TTTAGGTGGGTGCTA VFMJ11_A0382 430137 - 428707 - | amino acid permease TERM 485 430205 - 430246 + H 73 -3.7 -5.1287 | overlap 430208 AAGTAATGGTATTGG TGTGGAGGGATTTGGTTAT GGTT ATAAACCAATCCCCCCTTA TTTTTTGGCTCTGAA TERM 486 430208 - 430243 + G 81 -7.6 -4.65666 | overlap 430205 TAATGGTATTGGTGT GGAGGGATTTGGTTAT GGTT ATAAACCAATCCCCCC TTATTTTTTGGCTCT VFMJ11_A0384 430206 - 430346 + | hypothetical protein VFMJ11_A0383 430764 - 430312 - | evolved beta-galactosidase beta-subunit VFMJ11_A0385 433823 - 430764 - | evolved beta-galactosidase subunit alpha (Lactase) TERM 487 434186 - 434168 - R 93 -7.4 -5.49569 | opp_overlap 434168 TATTAATATAAAAAA GCAACGCC ATA AACGTTGC TTAATGTTGGTAGTA VFMJ11_A0386 435213 - 434218 - | HTH-type transcriptional regulator EbgR TERM 488 435167 - 435192 + g 73 -8.3 -3.62756 | overlap 435165 ACACGAGAAACCGTT GCCAATGAAAC TTCA GCTTCGTTGGC TATTTCCTTTAACGT VFMJ11_A0387 436095 - 435316 - | DNA polymerase III, epsilon chain VFMJ11_A0388 437958 - 436099 - | cyclic nucleotide binding protein TERM 489 436329 - 436317 - G 70 -7.7 -3.65314 | TTGAATCGTTAAGAA CACCA ACT TGGTG TAAAAATTCCATGCG TERM 490 437553 - 437564 + g 83 -7.2 -4.66833 | GTTTACTATCCTGCG CGCG TAAA CGCG TTTTTAAACTTAAAG TERM 491 438076 - 438021 - R 72 -8.1 -3.45324 | opp_overlap 438009 438022, overlap 438019 438022 438068 TATGCCTAGTAAACA TTGCAGGCTATTCATATTAATTA-CAA CCAA CTGATAATTAATATGAATAGCCC-CAT CATTGGATGAGGCTA TERM 492 438075 - 438022 - R 83 -11.6 -2.66873 | opp_overlap 438009 438022, overlap 438021 438019 438068 ATGCCTAGTAAACAT TGCAGGCTATTCATATTAATTA-CAA CCAA CTGATAATTAATATGAATAGCCC-CA TCATTGGATGAGGCT TERM 493 438091 - 438068 - R 90 -11.8 -3.43218 | opp_overlap 438022, overlap 438022 438021 438019 GATAATTAATATGAA TAGCCCCATC ATTG GATGAGGCTA GAGAAGATTACCAGA VFMJ11_A0389 439730 - 438099 - | sodium/glucose cotransporter TERM 494 439928 - 439941 + H 73 -3.9 -5.10029 | GTTTTTTTGCTTTCG TGTAA ACGT TTACA TTTTTTGAAATTGAT galE_1 440017 - 441027 + | UDP-glucose 4-epimerase galT 441113 - 442162 + | galactose-1-phosphate uridylyltransferase galK 442308 - 443462 + | galactokinase TERM 495 443506 - 443540 + G 70 -7.9 -3.63515 | gap 1, overlap 443513 TGTTCGAAACCATGA CTCAG-GAGGCGGCCA GCGA TGGTCGCCTTGCTCAG TTATTCGAACTGAAA TERM 496 443513 - 443532 + G 82 -11.4 -3.25169 | overlap 443506 AACCATGACTCAGGA GGCGGCCA GCGA TGGTCGCC TTGCTCAGTTATTCG galM 443472 - 444533 + | galactose mutarotase TERM 497 444543 - 444570 + T 83 -11.4 -2.95111 | opp_overlap 444548, overlap 444548 GTTTAATTAGATAGA AAAAAGGAGCGA TTAT TCGCTCCTTTTG ATTTAGTACTTTTGA TERM 498 444565 - 444548 - T 100 -11.3 -5.43414 | opp_overlap 444548 444543 ATTAGATAGAAAAAA GGAGCGA TTAT TCGCTCC TTTTGATTTAGTACT TERM 499 444548 - 444565 + T 100 -11.3 -4.59376 | opp_overlap 444548, overlap 444543 ATTAGATAGAAAAAA GGAGCGA TTAT TCGCTCC TTTTGATTTAGTACT VFMJ11_A0394 447645 - 444595 - | transporter, AcrB/D/F family TERM 500 445142 - 445154 + g 72 -3.4 -5.01732 | TAACCTGATGGCAGC TCGA TCGCT TCGA TTTTTTGACGAACTT VFMJ11_A0395 448761 - 447649 - | acriflavin resistance periplasmic protein TERM 501 448208 - 448220 + g 87 -4.9 -5.43866 | GCTTGAATTTGAACG TGATT ATC AATCA TTTTTTTGCCGATTA TERM 502 448319 - 448340 + g 75 -5.9 -4.82154 | opp_overlap 448319 GCTAGTTGATAACGA GTGATTAAG GTAT CTAAATCAC TTTTTGCTATCGCTT TERM 503 448392 - 448402 + g 85 -6.8 -5.0916 | TGCCACGAGTGTATT CAGC TTT GCTG TTTTTGTATTCCACA TERM 504 448884 - 448828 - H 83 -6.1 -5.18371 | opp_overlap 448829 448867, overlap 448823 TTTTACAAAATAAAA GTAAACTCCGGAGTTTATTTTATACGT AAA AAGCATAAAGTAAACTCAAAAGTATAC ATTTGTTTTTGGAAT VFMJ11_A0396 448932 - 449543 + | transcriptional regulator, TetR family VFMJ11_A0397 449691 - 452285 + | sensory transduction protein kinase VFMJ11_A0398 453312 - 452314 - | HTH-type transcriptional regulator GalR TERM 505 453346 - 453367 + H 74 -3.1 -5.24647 | opp_overlap 453351, overlap 453351 ATTAATTTGATCTAG TTAAAGTTT TAGT AAACTTTTA TTTTGTTTTCTATCT TERM 506 453351 - 453362 + H 77 -3 -5.40279 | opp_overlap 453351, overlap 453346 TTTGATCTAGTTAAA GTTT TAGT AAAC TTTTATTTTGTTTTC VFMJ11_A0399 453443 - 453775 + | methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) VFMJ11_A0400 454037 - 455545 + | sodium/proton-dependent alanine carrier protein TERM 507 455592 - 455574 - f 100 -11.8 -5.4593 | opp_overlap 455574 CTAAAATAAGAAAAA TGCCGTTA ATG TAACGGCA TTTTTTATGTCAAAT TERM 508 455574 - 455592 + F 100 -11.8 -5.37043 | opp_overlap 455574 CTAAAATAAGAAAAA TGCCGTTA ATG TAACGGCA TTTTTTATGTCAAAT VFMJ11_A0401 455625 - 456017 + | transporter VFMJ11_A0402 456098 - 456445 + | translation initiation inhibitor TERM 509 456485 - 456449 - f 75 -8.2 -3.82604 | opp_overlap 456443 456478 GCAGTTAAGTAATAA TTATGTCGCTAAATAG GACGT CTATTTAGTGGCATAA ATACAGATTTATCCA TERM 510 456687 - 456717 + F 83 -4.7 -5.5112 | TATACACTTGTCTCT GTCGTCGTTGTCA TTCAC TGATACTGACGGC TTTTTTATTCGTCAG TERM 511 457025 - 457051 + G 85 -6.6 -5.0925 | TTAACAGCACTATTA CCTAAATGGATG GAC CGTTCATTTTGG TTTTTAGTTTTAACC TERM 512 457568 - 457554 - g 73 -8.6 -3.63068 | CTACATCATCTGAAA TTGCAC CAA GTGCAA CCAATGGTGGTGAGA brnQ_3 456809 - 458125 + | branched-chain amino acid transport system II carrier protein TERM 513 458168 - 458148 - f 87 -9.7 -3.91897 | opp_overlap 458148 TTGCGTATTGATAAA GAGCAGCCA TAA TGGTTGCTC TTTTTGTTTTTGGAA TERM 514 458148 - 458168 + F 100 -11.9 -5.61881 | opp_overlap 458148 TTGCGTATTGATAAA GAGCAGCCA TAA TGGTTGCTC TTTTTGTTTTTGGAA VFMJ11_A0404 458199 - 459095 + | deacetylase TERM 515 459198 - 459208 + F 80 -2.6 -5.61881 | TTTAACTTTATGATT TAAA AGA TTTA TTTTTCTTTTTAGGC VFMJ11_A0405 459312 - 460997 + | hypothetical membrane spanning protein TERM 516 461026 - 461047 + F 100 -10.9 -5.38047 | overlap 461023 ATTCCCAATGATTTA GCCGCTAAT TTGA GTTAGCGGC TTTTTTATATGCGTA TERM 517 461289 - 461279 - g 78 -4 -5.33405 | opp_overlap 461279 CGTAGGAAATAAAAA TGAT TAC ATCA TTAGTTAATACCGAC VFMJ11_A0406 461278 - 461709 + | PTS system, fructose-specific IIA component VFMJ11_A0407 461727 - 463121 + | pts system, fructose-specific iibc component TERM 518 463175 - 463197 + T 93 -7.7 -5.64873 | opp_overlap 463175 AACTCCTAACTAAAA GCCTCTTAG TCCCC CTTAGAGGC TTTTTTGTTATTAAC TERM 519 463197 - 463175 - T 81 -7.7 -4.41895 | opp_overlap 463175 AACTCCTAACTAAAA GCCTCTTAG TCCCC CTTAGAGGC TTTTTTGTTATTAAC TERM 520 463217 - 463252 + T 100 -9.1 -5.26875 | opp_overlap 463221, overlap 463219 463221 TTGTTATTAACAATA AAAAGCCCGCATTAT TTCCTT ATAATGCGGGCTATC TTTTTTAATTCGGAA TERM 521 463219 - 463250 + T 100 -11.7 -4.26777 | opp_overlap 463221, overlap 463217 463221 GTTATTAACAATAAA AAGCCCGCATTAT TTCCTT ATAATGCGGGCTA TCTTTTTTAATTCGG TERM 522 463221 - 463248 + T 100 -14.3 -3.71857 | opp_overlap 463221, overlap 463219 463217 TATTAACAATAAAAA GCCCGCATTAT TTCCTT ATAATGCGGGC TATCTTTTTTAATTC TERM 523 463248 - 463221 - T 100 -14.3 -5.31855 | opp_overlap 463221 463219 463217 TATTAACAATAAAAA GCCCGCATTAT TTCCTT ATAATGCGGGC TATCTTTTTTAATTC VFMJ11_A0408 463866 - 463306 - | hypothetical protein TERM 524 463837 - 463817 - G 79 -5.5 -5.00467 | overlap 463819 CCAACAATAATAAAA TATTTCCAA CCT TTGGAAATT AAAGCCTGACTTGGA TERM 525 463835 - 463819 - G 75 -8.1 -4.10348 | overlap 463817 AACAATAATAAAATA TTTCCAA CCT TTGGAAA TTAAAGCCTGACTTG VFMJ11_A0409 464135 - 465406 + | mechanosensitive ion channel TERM 526 465418 - 465436 + F 83 -7.5 -4.68545 | opp_overlap 465418 TTAATTATGAATAAA TGCTAGT GACTA ACTAGCA TTTTATCTATTAAGT TERM 527 465436 - 465418 - f 81 -7.5 -4.29227 | opp_overlap 465418 TTAATTATGAATAAA TGCTAGT GACTA ACTAGCA TTTTATCTATTAAGT VFMJ11_A0410 465787 - 466824 + | outer membrane protein TERM 528 466886 - 466860 - f 85 -10.2 -3.34013 | opp_overlap 466860 TACTTTCCTAATCAA TCCAGTGTGCCT GCA AAGTACACTGGA TTTTTTATGTTTAGA TERM 529 466860 - 466886 + F 100 -10.2 -5.56264 | opp_overlap 466860 TACTTTCCTAATCAA TCCAGTGTGCCT GCA AAGTACACTGGA TTTTTTATGTTTAGA TERM 530 468187 - 468153 - g 85 -9.2 -4.25848 | opp_overlap 468159 AATGCGCCATTAAAA GAAGATCGTCCAAGAC AGG GTCGCGGCCGTTCTTC AGATAAACGAAAAAT rhlE 466995 - 468251 + | ATP-dependent RNA helicase RhlE TERM 531 468266 - 468280 + F 83 -4.9 -5.50499 | opp_overlap 468266 AAGACAAATAATAAA GGTGC GTATA GCGCC TTTTTTTAAATGTGA VFMJ11_A0412 468527 - 469414 + | hypothetical protein VFMJ11_A0413 469418 - 470542 + | outer membrane protein/protective antigen OMA87 VFMJ11_A0414 470553 - 471605 + | hypothetical protein TERM 532 471656 - 471629 - T 100 -14.2 -5.31855 | opp_overlap 471629 TATTAATAATAAAAA GCCCTGATTCGA TTTC TCGCATCAGGGC TTTATTTTTAATCAT TERM 533 471629 - 471656 + T 100 -14.2 -4.92756 | opp_overlap 471629 TATTAATAATAAAAA GCCCTGATTCGA TTTC TCGCATCAGGGC TTTATTTTTAATCAT TERM 534 471706 - 471722 + T 77 -5.9 -4.68593 | TTTGCTTTACCCATA TTTGGTG TCG TACCAAA TTTTTCAGTGCTAAA VFMJ11_A0415 473285 - 471684 - | glycine betaine transporter OpuD TERM 535 473454 - 473430 - R 95 -8.7 -4.96646 | opp_overlap 473430 TGATATAAGTAAAAA CGCCTTAAA ACAGTAA TTTAAGGCG TTTTTTATACAGCAT TERM 536 473430 - 473454 + r 95 -8.7 -5.24531 | opp_overlap 473430 TGATATAAGTAAAAA CGCCTTAAA ACAGTAA TTTAAGGCG TTTTTTATACAGCAT VFMJ11_A0416 474611 - 473481 - | fusaric acid resistance protein FusE VFMJ11_A0417 474991 - 474611 - | GTPase TERM 537 475128 - 475105 - R 95 -4.6 -6.17268 | gap 1, opp_overlap 475105 475125 TTAGAATAAAAAAAA CCGACTGCAGT CAA AATG-AGTCGG TTTTTCGAGTGTTTT TERM 538 475105 - 475128 + r 70 -4.6 -4.69464 | gap 1, opp_overlap 475105, overlap 475125 TTAGAATAAAAAAAA CCGACTGCAGT CAA AATG-AGTCGG TTTTTCGAGTGTTTT VFMJ11_A0418 476196 - 475159 - | sensory transduction protein kinase VFMJ11_A0419 476536 - 476895 + | hypothetical protein TERM 539 476941 - 476912 - T 95 -8.7 -5.14163 | opp_overlap 476917, overlap 476917 ATTTAGTAATAAAAA GAAAACCCATACC GATA AGTATGGGTTTTT GTTTTGTACGAAAAT TERM 540 476936 - 476917 - T 95 -8.6 -5.42605 | opp_overlap 476917, overlap 476912 GTAATAAAAAGAAAA CCCATACC GATA AGTATGGG TTTTTGTTTTGTACG TERM 541 476917 - 476936 + T 93 -7.9 -5.54907 | opp_overlap 476912 476917 GTAATAAAAAGAAAA CCCATAC CGATAA GTATGGG TTTTTGTTTTGTACG rnb 478996 - 476966 - | exoribonuclease II TERM 542 480034 - 480016 - g 77 -5.2 -4.86033 | opp_overlap 480016 AAAGGCGTAGAAAAA GACGAAGC AAT GTCTCGTC TACTTGAAACTGAAG VFMJ11_A0421 479320 - 481242 + | cold-shock deAd box protein a TERM 543 481293 - 481263 - T 100 -11.3 -4.63107 | opp_overlap 481269, overlap 481269 AGCAAAGAATTAAAA TAAAAACCGAGCT CATGT AGCTCGGTTTTTT TGTGTTTGTAAAAAA TERM 544 481269 - 481287 + T 100 -10.3 -5.90231 | opp_overlap 481263 481269 GAATTAAAATAAAAA CCGAGCT CATGT AGCTCGG TTTTTTTGTGTTTGT TERM 545 481287 - 481269 - T 100 -10.3 -5.54338 | opp_overlap 481269, overlap 481263 GAATTAAAATAAAAA CCGAGCT CATGT AGCTCGG TTTTTTTGTGTTTGT VFMJ11_A0422 483372 - 481342 - | NADH oxidase TERM 546 482827 - 482843 + g 83 -9.5 -3.87075 | opp_overlap 482825 GTCAAGTAAATAGCC TTCATGC ACA GCATGAA TTTCTACACCATCAT TERM 547 483446 - 483400 - H 100 -12 -4.52349 | opp_overlap 483399 483400 ATAAATAAATAGAAA TTTGATTACTTAATCATTGG TCTTAAT CCAAAAATTAAGTAATCAAA CTTGGTATTATTTAA TERM 548 483400 - 483446 + H 75 -9.8 -2.6961 | opp_overlap 483400, overlap 483399 ATAAATAAATAGAAA TTTGATTACTTAATCATTGG TCTTAAT CCAAAAATTAAGTAATCAAA CTTGGTATTATTTAA VFMJ11_A0423 483617 - 484579 + | transcriptional regulator, AraC family TERM 549 484854 - 484828 - g 72 -9.6 -2.93901 | opp_overlap 484836 ACCGTATGAATCATA TTACGAACTAGA AGA TCTATTTCGTAA GCATATTCATGATAG VFMJ11_A0424 484712 - 485236 + | spermidine N(1)-acetyltransferase TERM 550 485270 - 485239 - T 93 -13.2 -3.34089 | opp_overlap 485244, overlap 485244 CCGTAATAATTAATA GAAAAGGGCTTCTA ATAT TAGAAGCCCTTTTT ATTTGCCAACCGTAC TERM 551 485265 - 485244 - T 100 -13.1 -4.74767 | opp_overlap 485244, overlap 485239 ATAATTAATAGAAAA GGGCTTCTA ATAT TAGAAGCCC TTTTTATTTGCCAAC TERM 552 485244 - 485265 + T 100 -13.1 -5.27335 | opp_overlap 485239 485244 ATAATTAATAGAAAA GGGCTTCTA ATAT TAGAAGCCC TTTTTATTTGCCAAC VFMJ11_A0425 486761 - 485298 - | formate/nitrite transporter family protein TERM 553 487349 - 487339 - g 72 -3.2 -5.03314 | opp_overlap 487328 TTTAGGTGTAAAAAA CACC TCT GGTA TTATTGAAGGGGTAT VFMJ11_A0426 486953 - 487858 + | transcriptional regulator, LysR family VFMJ11_A0427 487954 - 488634 + | hypothetical membrane spanning protein TERM 554 488689 - 488666 - f 93 -9.6 -4.14541 | opp_overlap 488666 TATGAATGATATAAA CGGTCAACTT TATA AGGTTGACCG TTTTTTTATGTCAAA TERM 555 488666 - 488689 + F 100 -11.8 -5.71712 | opp_overlap 488666 TATGAATGATATAAA CGGTCAACTT TATA AGGTTGACCG TTTTTTTATGTCAAA VFMJ11_A0428 488816 - 490681 + | methyl-accepting chemotaxis protein TERM 556 490735 - 490716 - T 90 -10.8 -3.87354 | opp_overlap 490716 TAAATTGATATTAAA GCTCAAGA GTAT TCTTGAGC TTTTTTAACTGCTTT TERM 557 490716 - 490735 + T 100 -10.8 -5.13521 | opp_overlap 490716 TAAATTGATATTAAA GCTCAAGA GTAT TCTTGAGC TTTTTTAACTGCTTT VFMJ11_A0429 491609 - 490749 - | amino acid ABC transporter permease protein VFMJ11_A0430 492422 - 491613 - | ABC transporter amino acid-binding protein VFMJ11_A0431 493231 - 492437 - | amino acid ABC transporter permease protein VFMJ11_A0432 493979 - 493233 - | general L-amino acid transport ATP-binding protein AapP VFMJ11_A0433 494228 - 495280 + | 3-deoxy-7-phosphoheptulonate synthase TERM 558 495329 - 495298 - T 70 -7.3 -3.79419 | opp_overlap 495302, overlap 495296 495302 GTTCTTTACAAAATA TCAACGCCAACAG TATATG CTGTTGGCGTTTT TTTATCCTTGTCCTT TERM 559 495302 - 495325 + T 100 -13.2 -5.73339 | opp_overlap 495298 495296 495302 TTTACAAAATATCAA CGCCAACAGT ATAT GCTGTTGGCG TTTTTTTATCCTTGT TERM 560 495325 - 495302 - T 95 -12.5 -3.57825 | opp_overlap 495302, overlap 495298 495296 TTTACAAAATATCAA CGCCAACAG TATATG CTGTTGGCG TTTTTTTATCCTTGT VFMJ11_A0434 496965 - 495331 - | putative RecF family protein VFMJ11_A0435 497193 - 498932 + | 5'-nucleotidase VFMJ11_A0436 498968 - 499081 + | hypothetical protein TERM 561 499091 - 499114 + F 100 -10.4 -5.4756 | opp_overlap 499091 GGGTGACATTTAAAA GGCTTTCTAA TTAA TTAGGAAGCC TTTTTTATTAGCGTT TERM 562 499114 - 499091 - f 81 -8.2 -4.2349 | opp_overlap 499091 GGGTGACATTTAAAA GGCTTTCTAA TTAA TTAGGAAGCC TTTTTTATTAGCGTT TERM 563 499197 - 499215 + F 79 -4 -5.5604 | overlap 499188 ATTAGCTTAAATTGT TTAAATTA TGT TAATTTGA TTTTTTATTCATTAG TERM 564 499336 - 499324 - f 71 -3.4 -5.12068 | TACATTGAAGAAAAA GTCA TTTTT TGAC CAGTAAATTAAGCTT TERM 565 499482 - 499494 + G 71 -4.1 -4.93877 | AAAGGATTGATTGCT CATCT TGT GGATG TTTTGTTTGGTAAAG VFMJ11_A0437 499395 - 499583 + | hypothetical protein TERM 566 499621 - 499604 - T 88 -7.7 -5.02715 | opp_overlap 499604, overlap 499598 AGATGAAAGGAAAAA GCTAGCA GATG CGCTAGC TTTTTTTATATCTGA TERM 567 499604 - 499621 + T 93 -7 -5.76633 | opp_overlap 499598 499604 AGATGAAAGGAAAAA GCTAGC AGATGC GCTAGC TTTTTTTATATCTGA VFMJ11_A0438 501234 - 499651 - | ggdef domain protein VFMJ11_A0439 502705 - 501236 - | ATP-dependent transcriptional regulator VFMJ11_A0440 503807 - 502827 - | pts system, mannitol-specific iibc component VFMJ11_A0441 505285 - 503816 - | transposase deoD_2 506053 - 505343 - | purine nucleoside phosphorylase VFMJ11_A0443 506387 - 507049 + | KtrA TERM 568 507797 - 507807 + G 70 -3.2 -4.89567 | CCTTGTTATTAGTTG GGAC ATT GTTC TTTTATATTTTAGAG VFMJ11_A0444 507046 - 508410 + | KtrB TERM 569 508508 - 508477 - T 89 -8.9 -4.4715 | opp_overlap 508482, overlap 508482 GTTCAATCCATAAAA GAAAAGGCATACA AAATAG TGTATGCCTTTTT TATGTTGCTCAGATC TERM 570 508503 - 508482 - T 95 -8.8 -5.19275 | opp_overlap 508482, overlap 508477 ATCCATAAAAGAAAA GGCATACA AAATAG TGTATGCC TTTTTTATGTTGCTC TERM 571 508482 - 508503 + T 95 -8.8 -5.49569 | opp_overlap 508482 508477 ATCCATAAAAGAAAA GGCATACA AAATAG TGTATGCC TTTTTTATGTTGCTC VFMJ11_A0445 509603 - 508530 - | mechanosensitive ion channel VFMJ11_A0446 510272 - 509622 - | possiBle hydrogenase cytochrome b-type TERM 572 510234 - 510211 - G 88 -11.1 -4.0162 | opp_overlap 510204 GCGGTATACCATAAA GAGCCAAGT ACAACG ACTTGGCTC CAGTGGTAAATTCGG VFMJ11_A0447 510743 - 510288 - | cytochrome c' VFMJ11_A0448 510939 - 511466 + | phosphohydrolase VFMJ11_A0449 511456 - 511677 + | hypothetical protein TERM 573 511679 - 511727 + T 80 -9.4 -3.70863 | gap 2 AATATCGTCGTTAAC TTTAGATGGTTCAATTAACATAAT GAT GTT-TGTTAATTGAACC-TCTAGA TTTCAATCATGTCTC VFMJ11_A0450 512074 - 511748 - | hypothetical protein VFMJ11_A0451 512325 - 513233 + | oxidoreductase YdhF TERM 574 513284 - 513263 - T 100 -10.2 -5.04222 | opp_overlap 513263 TAAGTAAACCAAAAA TGGGATGC AAATTG GCATCCCA TTTTTATTGTTAGCT TERM 575 513263 - 513284 + T 100 -10.2 -5.30348 | opp_overlap 513263 TAAGTAAACCAAAAA TGGGATGC AAATTG GCATCCCA TTTTTATTGTTAGCT pyrC 514343 - 513315 - | dihydroorotase, homodimeric type TERM 576 514467 - 514453 - H 73 -3.6 -5.05079 | AGAACGATAGAAAAA GTTATA ATT TACAAC AAAGAAGACGTAATA VFMJ11_A0453 514626 - 514823 + | hypothetical protein TERM 577 514847 - 514800 - T 82 -10 -3.70149 | opp_overlap 514802, overlap 514802 GGGAGAGGAGGTAAA GAGCCCTATTCAAAAGCAGCAT AAGA ATGTTGAGTTTGAATAGGGCTT TTTTTGTGATCAATA TERM 578 514802 - 514845 + T 100 -14.8 -5.67063 | opp_overlap 514800 514802 GAGAGGAGGTAAAGA GCCCTATTCAAAAGCAGCAT AAGA ATGTTGAGTTTGAATAGGGC TTTTTTTGTGATCAA TERM 579 514845 - 514802 - T 93 -12.6 -3.43109 | opp_overlap 514802, overlap 514800 GAGAGGAGGTAAAGA GCCCTATTCAAAAGCAGCAT AAGA ATGTTGAGTTTGAATAGGGC TTTTTTTGTGATCAA VFMJ11_A0454 514982 - 514857 - | hypothetical protein TERM 580 515095 - 515053 - g 76 -10.9 -2.73124 | gap 1, opp_overlap 515065, overlap 515065 CTGTACGCTCCAAAT TCTATAAAAAAAGCTCTCGC ATTA ACGAGAGCTTTTTTTAT-GC CTGTAATTTACACAA TERM 581 515084 - 515065 - g 100 -10 -5.63504 | opp_overlap 515065, overlap 515053 AATTCTATAAAAAAA GCTCTCGC ATTA ACGAGAGC TTTTTTTATGCCTGT TERM 582 515065 - 515084 + G 100 -9.3 -5.65177 | opp_overlap 515065 515053 AATTCTATAAAAAAA GCTCTCG CATTAA CGAGAGC TTTTTTTATGCCTGT VFMJ11_A0456 514989 - 515117 + | hypothetical protein VFMJ11_A0457 515214 - 517544 + | ATP-dependent protease La TERM 583 517600 - 517558 - f 76 -6.6 -4.60041 | opp_overlap 517558 517569, overlap 517569 AGTCATTGTTAAAAA TATTATAAAAATGTACAG GTGTGTT CTGTACATTTTTTTTATA TGTTATTTGTAAATT TERM 584 517569 - 517589 + F 95 -6.2 -6.08563 | opp_overlap 517558 517569, overlap 517558 AAAATATTATAAAAA TGTACAGG TGTGT TCTGTACA TTTTTTTTATATGTT TERM 585 517589 - 517569 - f 77 -5.5 -5.02201 | opp_overlap 517569 517558, overlap 517558 AAAATATTATAAAAA TGTACAG GTGTGTT CTGTACA TTTTTTTTATATGTT TERM 586 518528 - 518515 - g 71 -3.9 -4.86613 | GAAAACCAAAACAAA TTCAA ATGA TTGAA GCAGAAGATAAATCA VFMJ11_A0458 517740 - 518969 + | hypothetical protein TERM 587 519004 - 519034 + T 93 -3.4 -6.11019 | gap 1, opp_overlap 519004, overlap 518995 AATTAATAAATAGAA GCTCCT-TAGTTT TATTCT AAACGAGAGGAGC TTTTTTTTACTTTTT VFMJ11_A0459 519382 - 519041 - | dopa 4,5-dioxygenase TERM 588 519434 - 519415 - R 100 -8.6 -5.85244 | opp_overlap 519415 AATGAAAATAAAAAA GGCCAAAC CGAA GTTTAGCC TTATTATAGTTCATT tdh 520495 - 519464 - | L-threonine 3-dehydrogenase kbl 521691 - 520495 - | 2-amino-3-ketobutyrate coenzyme A ligase VFMJ11_A0462 521813 - 522745 + | transcriptional regulator, LysR family TERM 589 523024 - 523004 - g 84 -6.9 -4.9725 | ACGTTTATAGAAAAA TAGCACAAA AGT TTGGTGCTA AGATTAAGATAGATG VFMJ11_A0463 522742 - 523119 + | hypothetical protein TERM 590 523352 - 523380 + F 75 -9.7 -2.71022 | opp_overlap 523359 523360, overlap 523351 523359 523360 TTAAATGACACTTCA CGCAAAATTAAGC AAC GCTTAGTTTTGAG CTCTTTAATAATTTG TERM 591 525101 - 525082 - f 72 -9.2 -2.65808 | opp_overlap 525088, overlap 525079 AGTCGTAACAAGGTA GCCCTAGG GGAA CCTGGGGC TGGATCACCTCCTTA TERM 592 525355 - 525376 + F 70 -8.1 -3.15742 | overlap 525354 ATCCTGCACGACCCA CCATTCTTT CCAC AGAGAATGG GTTTATTCCTGATAG TERM 593 525737 - 525709 - f 87 -12.7 -3.06009 | TAAAAGTTCTTAATA TCCTTTGTTTTAC TTT GTAAAACAAAGAA CAACACATTCAAGTG TERM 594 525892 - 525902 + F 76 -4 -5.26119 | GATCTCAAGTTATTT TTAC GCA GTAA TTTTATTTTTAGACA TERM 595 526516 - 526504 - f 89 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 596 527309 - 527293 - f 85 -9.4 -4.08546 | overlap 527305 ATGAGTAACGATAAA GCGGGT GAAAA ACCCGC TCGCCGGAAGACCAA TERM 597 529044 - 529019 - f 72 -9.3 -2.62396 | opp_overlap 529016 529026, overlap 529026 CAGTTTTCCAGATTA TTATTAATCAT TACC ATGATTAATAA ACAAATTTTGCTTGG TERM 598 529243 - 529230 - f 84 -5.3 -5.41746 | AAGTCTTTAAAAAAA CTACA GGGG TGTAG CTCCAATTGGCAGAG TERM 599 529277 - 529261 - f 81 -10.9 -2.63631 | opp_overlap 529260 CCAATTGGCAGAGCA GCGGATT CCA AATCCGC GTGTTGGGAGTTCGA TERM 600 529322 - 529345 + F 90 -8.2 -4.84527 | opp_overlap 529322 GCCATATTTAGAAAA GGCTTATATC GAAA GGTATGAGCC TTTTTGCTATCTGAG TERM 601 529447 - 529470 + F 81 -6 -4.84527 | opp_overlap 529447 TGCCATATTAAAGAA GGCTCATGTT GAAA GGTATGAGCC TTTTTGCTATCTGAG TERM 602 529572 - 529595 + F 90 -8.2 -4.84527 | opp_overlap 529572 TGCCATATTAAAGAA GGCTCATGTT GAAA GATATGAGCC TTTTTACTATCTGCA TERM 603 529698 - 529721 + F 90 -8.2 -4.84527 | opp_overlap 529698 TGCCATATTAAAGAA GGCTCATGTT GAAA GATATGAGCC TTTTTGCTATCTGCA TERM 604 529824 - 529847 + F 90 -8.2 -4.84527 | opp_overlap 529824 TGCCATATTAAAGAA GGCTCATGTT GAAA GATATGAGCC TTTTTGCTATCTGCA TERM 605 529950 - 529973 + F 100 -11.8 -4.84527 | opp_overlap 529950 GCCATATTTAGAAAA GGCTTGTATC GAAA GGTACAAGCC TTTTTGCTATCTGCA TERM 606 529973 - 529950 - f 100 -9.6 -4.45083 | opp_overlap 529950 GCCATATTTAGAAAA GGCTTGTATC GAAA GGTACAAGCC TTTTTGCTATCTGCA TERM 607 530076 - 530099 + F 88 -6 -5.58522 | opp_overlap 530076 GCCATATTTAGAGAA GGCTTATATC GAAA GGTACAAGCC TTTTTGTTTTCTATC VFMJ11_A0469 530242 - 531162 + | manganese-dependent inorganic pyrophosphatase TERM 608 531216 - 531185 - T 73 -8.8 -3.20226 | opp_overlap 531190, overlap 531190 ATATTAAGTAATAGA TAAAAGCCCATGCA GTGA TGTATGGGCTTTTT TATTATCTTTAAACC TERM 609 531190 - 531211 + T 100 -10.9 -5.66338 | opp_overlap 531190 531185 AAGTAATAGATAAAA GCCCATGCA GTGA TGTATGGGC TTTTTTATTATCTTT TERM 610 531211 - 531190 - T 93 -8.7 -4.70453 | opp_overlap 531190, overlap 531185 AAGTAATAGATAAAA GCCCATGCA GTGA TGTATGGGC TTTTTTATTATCTTT VFMJ11_A0470 531377 - 531225 - | putative nonsense-mediated mRNA decay protein NMD3 family protein TERM 611 531263 - 531279 + g 73 -8.1 -3.85817 | GTTTTCGTTTATCTA GAAAGAT CCC ATCTTTC TTTATCACACCGCAT VFMJ11_A0471 532154 - 531630 - | flagellar biosynthesis protein FlhF TERM 612 532313 - 532325 + H 80 -6.3 -4.67904 | opp_overlap 532313 532312 TTCCCAATTAAAAGT GATAC AAG GTATC TTTTTGGGATTAATC TERM 613 532694 - 532683 - g 70 -5.8 -4.3129 | TATGCATTATCAAAA GGCA TACA TGCC TATGGGAAAATAAAG TERM 614 533058 - 533074 + G 86 -4.4 -5.38497 | TCATTACCTACTATT CGAGCA TTAAT TGCTTG TTTTTTAGTTTCAAT VFMJ11_A0472 532329 - 534464 + | DNA internalization-related competence protein ComEC/Rec2 msbA 534499 - 536247 + | lipid A export permease/ATP-binding protein MsbA TERM 615 536262 - 536275 + G 79 -5.3 -5.00884 | opp_overlap 536262 ATGATTGAAAAAATT TGGTT TGAT AACCA TTTTTTAGGAAAGCT TERM 616 536294 - 536313 + G 77 -10 -3.406 | opp_overlap 536289, overlap 536308 TTTAGGAAAGCTATT GTGGCCAT TATT GTGGCCAC TTAGTTGCCTATTCA lpxK 536247 - 537233 + | tetraacyldisaccharide 4'-kinase VFMJ11_A0475 537235 - 537432 + | tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) kdsB 537414 - 538163 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase TERM 617 538185 - 538211 + T 100 -12.4 -5.76237 | opp_overlap 538185 TTTTATATAAAAAAA GCACATACCGTT TTA AACAGTATGTGC TTTTTTATTTGTATA TERM 618 538211 - 538185 - T 100 -14.6 -5.71712 | opp_overlap 538185 TTTTATATAAAAAAA GCACATACCGTT TTA AACAGTATGTGC TTTTTTATTTGTATA VFMJ11_A0477 539095 - 538232 - | integral membrane protein TERM 619 539165 - 539153 - H 83 -4.8 -5.55769 | opp_overlap 539153 CTTGAGAACAAAAAA CAGC GTCAT GCTG TTACTTCCTTGAGCT VFMJ11_A0478 539333 - 540010 + | protein SmtA TERM 620 540121 - 540140 + G 72 -3.6 -5.08088 | ATTTCTCATTGAATT TGCCAA CTGAGCGT TTGGCA TTTTTGTTGGCCATT VFMJ11_A0479 540036 - 541373 + | chromosome partition protein MukF (Protein kicB) TERM 621 541555 - 541566 + G 70 -3.6 -4.88067 | opp_overlap 541555 GCTGAACTGGTAAAG GCTC CTGA GGGC TTTTTCTACCTGCGT VFMJ11_A0480 541354 - 542091 + | chromosome partition protein MukE (Protein kicA) TERM 622 542491 - 542511 + G 79 -9.1 -3.87815 | opp_overlap 542491 GTCATGTAAAACCAA CCGATTTAA TGA TTGAATCGG TTTCTGAAAATCAAG TERM 623 542991 - 542946 - g 83 -6.2 -5.0133 | opp_overlap 542958, overlap 542984 GATCGTCGTAAAAAA GTTGAGCAAACATTAACGCA TCGTGT TGAGTTAATGAATGCACAAC GCAGCTTAGTGGATC TERM 624 543307 - 543287 - g 70 -8.3 -3.40622 | overlap 543283 TAGTCTTAAAACACA GCTTGCTGA TTA CCAACAAGC GTTGGATATGCAGCA TERM 625 543699 - 543663 - g 80 -8.2 -4.31815 | overlap 543666 AAAGCACAATACAAA GATCTTGAGCG-TGCAGT TCG ACTGCAACG-TCAAGCTC AAGAACTGGCTGAAG VFMJ11_A0481 542088 - 546560 + | chromosome partition protein MukB TERM 626 546607 - 546586 - Tf 73 -8.7 -3.23452 | opp_overlap 546586 ACTTTGATAAGTGAA TGGCAGTCA GGAA TGGCTGCCA TTTTTTTTGGAAAGA TERM 627 546586 - 546607 + TF 100 -10.9 -5.75342 | opp_overlap 546586 ACTTTGATAAGTGAA TGGCAGTCA GGAA TGGCTGCCA TTTTTTTTGGAAAGA VFMJ11_A0482 546692 - 546564 - | hypothetical protein VFMJ11_A0483 546673 - 547290 + | molecular chaperone protein VFMJ11_A0484 548646 - 547297 - | two component system histidine kinase VFMJ11_A0485 549304 - 548627 - | probable transcriptional regulatory protein YedW VFMJ11_A0486 549552 - 549953 + | hypothetical protein TERM 628 549989 - 549962 - T 100 -10.7 -4.3902 | opp_overlap 549959 549962, overlap 549957 ATTATAAAAAGTAAA GAGCCTTAACG GGGGAA CATTAAGGCTC TGAGTTTACAACATA nagE_2 551486 - 550029 - | pts system, N-acetylglucosamine-specific iibc component TERM 629 551597 - 551558 - R 100 -9.4 -4.71426 | opp_overlap 551562, overlap 551560 551561 GGCGGATTAACAAAA GATTGTGCCAACATTAAC TATA GTTAATGTTGGCACTTTA AGAAGCAAATTGTGA TERM 630 551595 - 551560 - R 95 -12 -3.97413 | opp_overlap 551562, overlap 551558 551561 CGGATTAACAAAAGA TTGTGCCAACATTAAC TATA GTTAATGTTGGCACTT TAAGAAGCAAATTGT TERM 631 551594 - 551561 - R 100 -15.5 -2.97725 | opp_overlap 551562, overlap 551560 551558 GGATTAACAAAAGAT TGTGCCAACATTAAC TATA GTTAATGTTGGCACT TTAAGAAGCAAATTG TERM 632 551562 - 551593 + r 100 -19 -3.53343 | opp_overlap 551561 551560 551558 GATTAACAAAAGATT GTGCCAACATTAAC TATA GTTAATGTTGGCAC TTTAAGAAGCAAATT VFMJ11_A0488 552825 - 551641 - | asparagine synthetase (glutamine-hydrolyzing) TERM 633 553252 - 553266 + G 70 -7.8 -3.77087 | opp_overlap 553251, overlap 553254 TTAGTTTATATAAGC TGGGGC AAG GCCCTA TTTGGGTATTGGCTC VFMJ11_A0489 553026 - 553871 + | esterase/lipase TERM 634 553889 - 553920 + T 100 -11 -5.60689 | ATAAAGAGATGTGAA GCCGATGCATAG AATTAAAG TTATGCATCGGC TTTTTTATTATCTGA VFMJ11_A0490 554953 - 553928 - | fucose 4-O-acetylase VFMJ11_A0491 555176 - 555562 + | hypothetical protein VFMJ11_A0492 555738 - 557072 + | copper/silver resistance outer membrane protein VFMJ11_A0493 557083 - 558552 + | copper/silver resistance periplasmic protein TERM 635 558774 - 558760 - g 72 -10 -2.71731 | CTTATCCTTTAACGA CGGCTA TGT TAGCCG TACCCGGAGCAGAGA VFMJ11_A0494 558549 - 561668 + | heavy metal efflux pump, CzcA family VFMJ11_A0495 561766 - 562272 + | copper-binding protein TERM 636 562272 - 562262 - T 70 -4 -4.88918 | overlap 562263 GCATGGTAAAGAAAA TTAC ATT GTAA TACCAACGTAACTAA TERM 637 562305 - 562329 + T 100 -11.5 -4.56702 | opp_overlap 562305 AGATGATATGAAAAA GCGGTAAGG AGGGTGG CCTTACCGC TTTCTTTCATTAAGA TERM 638 562329 - 562305 - T 100 -11.5 -4.83269 | opp_overlap 562305 AGATGATATGAAAAA GCGGTAAGG AGGGTGG CCTTACCGC TTTCTTTCATTAAGA VFMJ11_A0496 563979 - 562351 - | methyl-accepting chemotaxis protein TERM 639 564357 - 564326 - R 100 -8.2 -5.95539 | gap 1, opp_overlap 564327 564329 564333, overlap 564327 564329 GTGGAAATAAAAAAA TGAGTAAGCGGTG AATCAAA CACCGCTTACT-A TTAGGTTAGGGGAGG TERM 640 564357 - 564327 - R 93 -9.8 -4.15696 | opp_overlap 564327 564329 564333, overlap 564326 564329 TGGAAATAAAAAAAT GAGTAAGCGGTG AATCAAA CACCGCTTACTA TTAGGTTAGGGGAGG TERM 641 564327 - 564357 + r 79 -9.8 -3.17075 | opp_overlap 564326 564327 564329, overlap 564329 564333 TGGAAATAAAAAAAT GAGTAAGCGGTG AATCAAA CACCGCTTACTA TTAGGTTAGGGGAGG TERM 642 564329 - 564355 + r 87 -12.4 -3.14878 | opp_overlap 564326 564327 564329, overlap 564327 564333 GAAATAAAAAAATGA GTAAGCGGTG AATCAAA CACCGCTTAC TATTAGGTTAGGGGA TERM 643 564355 - 564329 - R 95 -12.4 -3.64572 | opp_overlap 564329 564327 564333, overlap 564326 564327 GAAATAAAAAAATGA GTAAGCGGTG AATCAAA CACCGCTTAC TATTAGGTTAGGGGA VFMJ11_A0497 566001 - 564373 - | methyl-accepting chemotaxis protein TERM 644 566038 - 566027 - R 71 -3 -5.09426 | opp_overlap 566027 TGTAATTCGAAAAAA TATC GTTA GATA TGTCTCATTGTTAGA TERM 645 566172 - 566195 + r 79 -8.2 -4.02535 | opp_overlap 566172 TATAGATACAAAAAA GCAGCAAG AGATTAAC CTTGCTGC TTTAATTCATTATGG TERM 646 566195 - 566172 - R 95 -8.9 -5.4492 | opp_overlap 566172 TATAGATACAAAAAA GCAGCAAGA GATTAA CCTTGCTGC TTTAATTCATTATGG VFMJ11_A0498 567848 - 566220 - | methyl-accepting chemotaxis protein TERM 647 567352 - 567330 - G 71 -4.8 -4.55023 | TGCAATATCAGAAAA CTCATTCACA CGT TGAGAAAGAG CATTGATAGAAGAAA TERM 648 567421 - 567440 + g 81 -2.9 -5.65927 | gap 1, opp_overlap 567425 GCATCGTAACTTTGA GAAA-CGG CCTGA CCGCTTTC TTTTTTATTTAGATA TERM 649 567815 - 567828 + g 79 -5.3 -5.14965 | GTAGTAAAACTTGAA TACGT ATAG ACGTA TTTTTTAATGAAAAT VFMJ11_A0499 568276 - 568031 - | hypothetical protein TERM 650 568379 - 568348 - R 76 -7.4 -3.95071 | opp_overlap 568348, overlap 568350 CAAATTGGGAAAGAA CACCCTTAGAGA TGGAATTT TCTCCAAGGGTA TGAGTTTTTAGAGAC TERM 651 568377 - 568350 - R 71 -7.8 -3.55603 | opp_overlap 568348, overlap 568348 AATTGGGAAAGAACA CCCTTAGAGA TGGAATTT TCTCCAAGGG TATGAGTTTTTAGAG hutH 569919 - 568387 - | histidine ammonia-lyase hutU 571656 - 569962 - | urocanate hydratase hutG 572712 - 571675 - | formimidoylglutamase hutI 573928 - 572702 - | imidazolonepropionase hutC 574813 - 574112 - | histidine utilization repressor VFMJ11_A0505 574974 - 575594 + | Methyltransferase domain family protein TERM 652 575602 - 575634 + T 100 -11.5 -5.2015 | opp_overlap 575607, overlap 575607 GTAAATAACCAATAC AAAAATGGCTAATCG AAG TGATTAGCCATTTTA TTTTTATCTTATTGA TERM 653 575607 - 575629 + T 100 -11.4 -5.40873 | opp_overlap 575607, overlap 575602 TAACCAATACAAAAA TGGCTAATCG AAG TGATTAGCCA TTTTATTTTTATCTT TERM 654 575629 - 575607 - T 100 -10.7 -5.1485 | opp_overlap 575607 575602 TAACCAATACAAAAA TGGCTAATC GAAGT GATTAGCCA TTTTATTTTTATCTT VFMJ11_A0506 576135 - 575662 - | fkbp-type peptidyl-prolyl cis-trans isomerase fkpa VFMJ11_A0507 576783 - 576160 - | thiol-disulfide isomerase TERM 655 576874 - 576843 - R 78 -7.4 -4.20981 | opp_overlap 576848 576868, overlap 576848 TGAAGAAAGTAGAAA TGAAATAGGACAAC AAAT GTTGTCCTATTTTG GTAAATATGTGTAAA TERM 656 576848 - 576869 + r 100 -11.7 -4.3014 | opp_overlap 576843 576848, overlap 576868 AAAGTAGAAATGAAA TAGGACAAC AAAT GTTGTCCTA TTTTGGTAAATATGT TERM 657 576869 - 576848 - R 100 -11.7 -4.18693 | opp_overlap 576848 576868, overlap 576843 AAAGTAGAAATGAAA TAGGACAAC AAAT GTTGTCCTA TTTTGGTAAATATGT VFMJ11_A0508 577792 - 576902 - | hypothetical protein TERM 658 577108 - 577124 + g 74 -4.4 -4.84642 | CTGCTGCAGTAACTT CAACGG CTTCT TCGTTG TTTTCTTCATTTGCA mfd 581337 - 577882 - | transcription-repair coupling factor TERM 659 580557 - 580543 - G 70 -2.8 -5.14563 | overlap 580546 TGTCTCATCAAAAAA TAATGG TTG CCAATA TTCGACACCAGCAGG VFMJ11_A0510 581922 - 581353 - | hypothetical protein VFMJ11_A0511 582090 - 583298 + | lipoprotein releasing system transmembrane protein LolE lolD 583291 - 584007 + | lipoprotein releasing system, ATP-binding protein lolE 584007 - 585251 + | lipoprotein releasing system, transmembrane protein LolE TERM 660 585277 - 585299 + F 100 -9.9 -5.43487 | opp_overlap 585277 TTTAGTAAGACCAAA GCCCTTAGA TATAT TCTGAGGGC TTTTTTATGTGATTT TERM 661 585299 - 585277 - f 76 -7.7 -3.95022 | opp_overlap 585277 TTTAGTAAGACCAAA GCCCTTAGA TATAT TCTGAGGGC TTTTTTATGTGATTT VFMJ11_A0514 585416 - 586765 + | hypothetical protein VFMJ11_A0515 586765 - 588078 + | chitin synthase VFMJ11_A0516 588084 - 589130 + | hypothetical permease TERM 662 589789 - 589801 + G 76 -3.4 -5.3236 | AGGTGTTTGGCATCG CTCA GCTCA TGAG TTTTTTGTGAATTCT VFMJ11_A0517 589226 - 590989 + | twin-arginine translocation pathway signal zwf 591152 - 592654 + | glucose-6-phosphate dehydrogenase TERM 663 593322 - 593303 - g 74 -5 -4.7254 | opp_overlap 593312 ACCCGGCAGCAAAAA TTCACTCA GCAT TGGGTGAA ACTGAATGGTTTTTA pgl 592651 - 593373 + | 6-phosphogluconolactonase TERM 664 594341 - 594331 - g 82 -4 -5.4505 | TTTGGTAAGAAAAAA TCAA TTG TTGA AGGTGATAAACAAGT TERM 665 594670 - 594640 - g 70 -5.4 -4.33708 | opp_overlap 594664, overlap 594642 AAAGTAGCAGCAAAA TCGATGGAAGTAGG GAT CCCAATGCCATCAA TGACATCAGCATTGA gnd 593410 - 594858 + | 6-phosphogluconate dehydrogenase, decarboxylating TERM 666 594888 - 594913 + T 100 -14.1 -4.98522 | opp_overlap 594888 CAATAAAATAAAAAA GCCCCTAACTT GTAT GAGTTAGGGGC TTTTTATATCGAATT TERM 667 594913 - 594888 - T 100 -13.4 -5.92399 | opp_overlap 594888 CAATAAAATAAAAAA GCCCCTAACT TGTATG AGTTAGGGGC TTTTTATATCGAATT VFMJ11_A0521 595597 - 594932 - | DedA family protein TERM 668 595357 - 595338 - G 70 -5.8 -4.37886 | gap 1, opp_overlap 595343, overlap 595339 595340 595354 CGACCTTGTAGAAAA GCCAATTGG CTA CCAATT-GC TGCAGCCATGATAAG TERM 669 595356 - 595340 - G 70 -9.5 -2.53125 | opp_overlap 595343, overlap 595338 595339 595354 ACCTTGTAGAAAAGC CAATTGG CTA CCAATTG CTGCAGCCATGATAA TERM 670 595933 - 595920 - H 72 -2.5 -5.30189 | TATAATATCAAAAAA TATAT TTTT ATATA AACATTAAGCGTGGG VFMJ11_A0522 596222 - 596845 + | transporter VFMJ11_A0523 597157 - 597768 + | transcriptional regulatory protein TcpP VFMJ11_A0524 597765 - 598154 + | TcpH VFMJ11_A0525 598206 - 599897 + | sensory box/ggdef family protein VFMJ11_A0526 600032 - 601240 + | ggdef domain protein TERM 671 601276 - 601303 + F 89 -7.1 -5.24531 | opp_overlap 601276 TTTATCTTATATAGA TAGTCATTTCC CTTTTT GGGGATGACTA TTTTTTATCAAACGT VFMJ11_A0527 601361 - 602713 + | hypothetical protein TERM 672 603656 - 603666 + G 73 -5.4 -4.59089 | GCCCGAGTTTGTTAG GTTG GGG CAAC TTTGTTTATACGTTA VFMJ11_A0528 602713 - 604026 + | chitin synthase VFMJ11_A0529 604032 - 605075 + | hypothetical protein VFMJ11_A0530 605099 - 605338 + | hypothetical protein VFMJ11_A0531 605415 - 607043 + | methyl-accepting chemotaxis protein TERM 673 607057 - 607081 + T 100 -13.7 -5.63517 | opp_overlap 607057 AGTGATGAAGATAAA GCTATAAGGCG TGG TGCCTTATAGC TTTTTTATTTACCGA TERM 674 607081 - 607057 - T 100 -13 -4.24075 | opp_overlap 607057 AGTGATGAAGATAAA GCTATAAGGC GTGGT GCCTTATAGC TTTTTTATTTACCGA gltS_1 608325 - 607102 - | sodium/glutamate symporter TERM 675 608458 - 608429 - R 83 -6.6 -4.84359 | opp_overlap 608428 TCACTGTCATAAAAA GTTCATAATTCA AGTGGG TGAATAATGAAC GATTTATGACAAAGA mrdB_2 609580 - 608483 - | rod shape-determining protein RodA TERM 676 608834 - 608815 - G 86 -4.4 -5.39755 | gap 1, opp_overlap 608819, overlap 608819 CATAAGTAGAAAAAA TG-AAGTCA GTG TGACTTTCA GGAATAAACCCCAGA TERM 677 609695 - 609724 + r 83 -8 -4.42788 | opp_overlap 609695 609698 CAGTAATGAAAGGGA TAACCCAACATT TCTCTT AATGATGGGTTA TTTTATGCAGTTAGA VFMJ11_A0534 611473 - 609767 - | ribosomal large subunit pseudouridine synthase A VFMJ11_A0535 613178 - 611478 - | ribosomal large subunit pseudouridine synthase A TERM 678 611562 - 611545 - G 71 -6.3 -4.15832 | opp_overlap 611547 611558, overlap 611538 611536 ATTAATGACAAATAA CCTGCAT GCAG ATGCAAG CGATTTGCCTTTTTT TERM 679 613254 - 613223 - R 75 -9.6 -2.72639 | gap 1, overlap 613222 613220 AGGGGTAAAGAAGAG TGC-GTGGTTAGATA TCA TATCAAACCACAGCA ATACCAATGACCATT TERM 680 613301 - 613256 - R 75 -8.5 -3.35746 | opp_overlap 613262, overlap 613220 613262 ATCAAACCACAGCAA TACCAATGACCATTAATGGAT GAAT AGCGATTGATGGTCATTGATA AAAAGCAAATGATTA VFMJ11_A0536 613550 - 613314 - | RNP-1 like RNA-binding protein TERM 681 613652 - 613625 - R 95 -8.5 -4.90471 | opp_overlap 613625 ATGCAAAATAGAAAA TCCGAAACAGC GATTAA GCCATTTCGGA TTTGGTTTTAGCCCT VFMJ11_A0537 614619 - 613696 - | porin, Gram-negative type TERM 682 613759 - 613781 + g 70 -2.7 -5.06223 | gap 1 GATTTGTTCAAATTT GTATCCTGCA TATG TGC-GGAAAC TTTTGTTTAGTTTGT TERM 683 614661 - 614643 - R 73 -8.2 -3.52472 | overlap 614639 ATACCTTTAAATTAA CCAAAACA CCC CGTTTTGG CCTAGTTATTTGCTT VFMJ11_A0538 615659 - 614793 - | hypothetical protein anmK 616797 - 615694 - | anhydro-N-acetylmuramic acid kinase TERM 684 617032 - 617057 + G 70 -3.3 -4.93877 | gap 1, overlap 617036 AGAGCGTGAGTTACT TCAG-CACCCAA CTG TTGGGGGATTGA TTTTATTTGCTCGAA TERM 685 617108 - 617090 - g 71 -6 -4.21908 | TATCATGATCCAAAA CAGTTAGT GGC ACTGACTG CATCCATTCGTAAAG VFMJ11_A0540 616970 - 617965 + | beta-hexosaminidase TERM 686 617992 - 618028 + T 89 -8.7 -4.43221 | opp_overlap 617997, overlap 617997 TATTTGGATGAAATA AAAAAGCCCCGATGTTG ATT TAACTGCGGGGCTTTTA TTTTATGCGATGTTT TERM 687 617997 - 618023 + T 95 -8.6 -5.18371 | opp_overlap 617997, overlap 617992 GGATGAAATAAAAAA GCCCCGATGTTG ATT TAACTGCGGGGC TTTTATTTTATGCGA TERM 688 618023 - 617997 - T 93 -7.9 -5.68438 | opp_overlap 617997 617992 GGATGAAATAAAAAA GCCCCGATGTT GATTT AACTGCGGGGC TTTTATTTTATGCGA pyk_2 619491 - 618046 - | pyruvate kinase VFMJ11_A0542 620273 - 619593 - | queuosine biosynthesis protein QueE VFMJ11_A0543 620457 - 621671 + | protein mlc (Making large colonies protein) TERM 689 621698 - 621718 + T 100 -9.7 -6.35605 | opp_overlap 621698 TAAAGTATTAAAAAA GAGCAGCGA ATT TGGCTGCTC TTTTTTTTTATATTG TERM 690 621718 - 621698 - T 100 -9.7 -5.243 | opp_overlap 621698 TAAAGTATTAAAAAA GAGCAGCGA ATT TGGCTGCTC TTTTTTTTTATATTG VFMJ11_A0544 622752 - 621748 - | Low specificity L-threonine aldolase VFMJ11_A0545 623035 - 624684 + | ATPase RavA TERM 691 625067 - 625054 - g 76 -6.7 -4.3953 | opp_overlap 625050 GCTAATGATAACAAA GGGTT AATG AACCC AATGTTCCCTCGATT VFMJ11_A0546 624703 - 626151 + | hypothetical protein VFMJ11_A0547 626394 - 626152 - | hypothetical protein TERM 692 626429 - 626410 - R 93 -9.3 -4.57073 | opp_overlap 626409 626408, overlap 626390 TATTTCTCCGAAAAA GGATGGC ACTAAA GCCATCC AATATTAATTATTTT VFMJ11_A0548 626875 - 626438 - | hypothetical protein VFMJ11_A0549 627084 - 627710 + | outer membrane protein TERM 693 627751 - 627716 - T 100 -16.4 -2.74523 | opp_overlap 627723, overlap 627723 TCACTGGTAACAGTA TAAAAAATGGCCCTCA TTAT TGAGGGCCATTTTGTA GATATTTATAAATTA TERM 694 627723 - 627744 + T 100 -14.5 -4.48877 | opp_overlap 627716 627723 TAACAGTATAAAAAA TGGCCCTCA TTAT TGAGGGCCA TTTTGTAGATATTTA TERM 695 627744 - 627723 - T 100 -14.5 -5.36965 | opp_overlap 627723, overlap 627716 TAACAGTATAAAAAA TGGCCCTCA TTAT TGAGGGCCA TTTTGTAGATATTTA VFMJ11_A0550 628234 - 627764 - | CreA protein VFMJ11_A0551 628650 - 629072 + | hypothetical protein TERM 696 629098 - 629083 - f 89 -9 -4.50159 | opp_overlap 629083 TCTAATTTAAATAAA GGATGG GGTA CCATCC TTTTTTGTAGGTGAT TERM 697 629083 - 629098 + F 95 -9 -5.28778 | opp_overlap 629083 TCTAATTTAAATAAA GGATGG GGTA CCATCC TTTTTTGTAGGTGAT VFMJ11_A0552 629114 - 629599 + | hypothetical protein VFMJ11_A0553 629622 - 631367 + | two component response regulator TERM 698 631436 - 631412 - T 100 -10.7 -5.60993 | opp_overlap 631412 CTTGGTATAAAAAAA GCCCTAACTCC ATG AGAGGTAGGGC TTTTTTCTTGGTTTT TERM 699 631412 - 631436 + T 100 -10 -5.61689 | opp_overlap 631412 CTTGGTATAAAAAAA GCCCTAACTC CATGA GAGGTAGGGC TTTTTTCTTGGTTTT gltS_2 632678 - 631455 - | sodium/glutamate symporter TERM 700 631825 - 631843 + g 77 -6 -4.6468 | opp_overlap 631823 631825 ACGGTACCTAAAATA TCGACAGT TTC AGTGTCGA TTTTATGTACTTTAG TERM 701 632803 - 632813 + r 73 -4 -5.1356 | overlap 632795 TCTGATTTCAGGGAC TGAT AGT ATCA TTTTTATTAATAGAG VFMJ11_A0555 633894 - 632899 - | hypothetical protein TERM 702 633184 - 633164 - G 71 -7.5 -3.90291 | overlap 633165 ATGCTGTTAACGAAA CGCCAAACC TCT GGATTGGCA TCAGAACTGTAATCT TERM 703 634054 - 634017 - R 87 -10.9 -3.51137 | gap 1, opp_overlap 634019 634023, overlap 634019 634023 AATTATTCTAGATAA GATAAACACGCTACATAA ACG TTA-GTAGCGTGTTTATT TATCTTAGAGCTTAT TERM 704 634019 - 634052 + r 100 -13.5 -4.20025 | gap 1, opp_overlap 634017 634019 634023, overlap 634023 TTATTCTAGATAAGA TAAACACGCTACATAA ACG TTA-GTAGCGTGTTTA TTTATCTTAGAGCTT TERM 705 634052 - 634019 - R 93 -13.5 -3.32698 | gap 1, opp_overlap 634019 634023, overlap 634017 634023 TTATTCTAGATAAGA TAAACACGCTACATAA ACG TTA-GTAGCGTGTTTA TTTATCTTAGAGCTT TERM 706 634023 - 634048 + r 100 -9.9 -4.68511 | gap 1, opp_overlap 634019 634017 634023, overlap 634019 TCTAGATAAGATAAA CACGCTACATAA ACG TTA-GTAGCGTG TTTATTTATCTTAGA TERM 707 634048 - 634023 - R 100 -9.9 -4.31164 | gap 1, opp_overlap 634023 634019, overlap 634019 634017 TCTAGATAAGATAAA CACGCTACATAA ACG TTA-GTAGCGTG TTTATTTATCTTAGA VFMJ11_A0556 635897 - 634071 - | ABC-type multidrug efflux pump VFMJ11_A0557 636088 - 637056 + | low-affinity zinc transport protein TERM 708 637082 - 637102 + T 79 -8.2 -4.03085 | opp_overlap 637083, overlap 637083 TGTACAGATAAAAAA AGGGGAGC GTAAA GCTCCCCG TTTGCATTTTTGTAA TERM 709 637101 - 637083 - T 100 -11.7 -5.76633 | opp_overlap 637083 637082 GTACAGATAAAAAAA GGGGAGC GTAAA GCTCCCC GTTTGCATTTTTGTA TERM 710 637083 - 637101 + T 84 -11.7 -3.00767 | opp_overlap 637083, overlap 637082 GTACAGATAAAAAAA GGGGAGC GTAAA GCTCCCC GTTTGCATTTTTGTA ylqF 638060 - 637125 - | ribosome biogenesis GTP-binding protein YlqF TERM 711 638171 - 638156 - R 100 -10.4 -5.24531 | opp_overlap 638156 ATTTTGTATAAAAAA CGGCCT AAAT AGGCCG TTTAAATTAATGCAT TERM 712 638156 - 638171 + r 87 -10.4 -3.78597 | opp_overlap 638156 ATTTTGTATAAAAAA CGGCCT AAAT AGGCCG TTTAAATTAATGCAT VFMJ11_A0559 638650 - 638201 - | lipoprotein, putative VFMJ11_A0560 640773 - 638662 - | hypothetical cytosolic protein TERM 713 639696 - 639706 + g 73 -6.8 -4.23104 | overlap 639694 TTTGTACGCCACTCA CCAC GGG GTGG TTTGTTAAAATTTGC TERM 714 641044 - 641073 + r 86 -12.3 -2.71263 | opp_overlap 641048, overlap 641048 TACAGGTGATTTTGA GTAACAGATGGAT GTTT ATCCAGCTGTTAC TCATTAAGAAGAGTT VFMJ11_A0561 641887 - 641087 - | FOG: EAL domain protein TERM 715 649113 - 649090 - g 79 -5.2 -5.16071 | overlap 649092 AATCAGCAACAAAAA CACCAGCAAC CTAT GTTCCTGGAG AAGTAATTGGTTTTG TERM 716 649111 - 649092 - g 71 -6.4 -4.19587 | overlap 649090 TCAGCAACAAAAACA CCAGCAAC CTAT GTTCCTGG AGAAGTAATTGGTTT TERM 717 652230 - 652218 - g 79 -3.4 -5.39721 | opp_overlap 652218 GTATTAGATAAAAAA GGAA AACAA TTCC TTGTAAAAGTCGACA VFMJ11_A0562 642285 - 652370 + | conserved repeat domain protein TERM 718 653576 - 653564 - g 80 -6.3 -4.66537 | GTGGTGAACACAAAA GGTAA AGT TTACC TCGATGTTCAATACG VFMJ11_A0563 652391 - 655927 + | hypothetical protein TERM 719 656381 - 656411 + G 73 -5.5 -4.56597 | gap 1, opp_overlap 656386 656387, overlap 656382 GGGCGAACATTAGAA GCAAATGCG-GCGA ACCG TCGCGCGTATTTGG TTTTTGAACAAACAG TERM 720 656382 - 656410 + G 72 -9 -3.33744 | gap 1, opp_overlap 656386 656387, overlap 656381 GGCGAACATTAGAAG CAAATGCG-GCGA ACCG TCGCGCGTATTTG GTTTTTGAACAAACA VFMJ11_A0564 655937 - 656857 + | OmpA family protein TERM 721 656894 - 656861 - T 100 -9.7 -5.8096 | opp_overlap 656864, overlap 656863 656864 GATAAAAAATAAAAA TAGGGCGTTCATTTA GAGG TAAATGAACGCCTTT CTGTTACGCTGTCAC TERM 722 656892 - 656863 - T 100 -12.3 -4.48934 | opp_overlap 656864, overlap 656861 656864 TAAAAAATAAAAATA GGGCGTTCATTTA GAGG TAAATGAACGCCT TTCTGTTACGCTGTC TERM 723 656864 - 656891 + T 100 -15.8 -4.20769 | opp_overlap 656863 656861 656864 AAAAAATAAAAATAG GGCGTTCATTTA GAGG TAAATGAACGCC TTTCTGTTACGCTGT TERM 724 656891 - 656864 - T 100 -15.8 -3.257 | opp_overlap 656864, overlap 656863 656861 AAAAAATAAAAATAG GGCGTTCATTTA GAGG TAAATGAACGCC TTTCTGTTACGCTGT VFMJ11_A0565 657725 - 656898 - | hypothetical cytosolic protein VFMJ11_A0566 657871 - 659253 + | ATP-dependent RNA helicase TERM 725 659321 - 659296 - T 100 -10.5 -5.73978 | opp_overlap 659296 ATCAGAAATAAAAAA TGACAAGGGAG CGAA CTTCCTTGTCA TTTTTTTTAAACTAA TERM 726 659296 - 659321 + T 100 -12.7 -5.78622 | opp_overlap 659296 ATCAGAAATAAAAAA TGACAAGGGAG CGAA CTTCCTTGTCA TTTTTTTTAAACTAA VFMJ11_A0567 659679 - 659398 - | protein Mmc1_2532 VFMJ11_A0568 660553 - 659741 - | phosphate-binding protein VFMJ11_A0569 661416 - 660616 - | AraC-type DNA-binding domain-containing protein TERM 727 660760 - 660774 + g 73 -5.7 -4.56914 | overlap 660752 TCTTAGTTGTGTTGC CGCAT AATTA ATGCG TTTTACTTTAACTAG TERM 728 662216 - 662228 + G 74 -4.9 -4.68724 | TTTTAAGTCCAAATC TCAAT GTC ATTGA TTTTATCTTAAATAA VFMJ11_A0570 661543 - 663255 + | oligopeptide-binding protein OppA VFMJ11_A0571 664268 - 663303 - | coproporphyrinogen III oxidase TERM 729 664130 - 664142 + g 70 -7.7 -3.78409 | TTCCATTATCTCTTA GCCAT TCT ATGGC TTTAAATTCAGTTGA VFMJ11_A0572 664447 - 664304 - | hypothetical protein TERM 730 664612 - 664632 + H 72 -9.1 -2.7264 | opp_overlap 664612, overlap 664611 TAGGTGGTAAAGTCA TGGCAAAGT AAT ACTTTGTCA ATTTGAGCCCACTTT VFMJ11_A0573 664751 - 666196 + | sensory transduction protein kinase VFMJ11_A0574 666171 - 666827 + | transcriptional regulator VFMJ11_A0575 666834 - 667742 + | hypothetical protein VFMJ11_A0576 667742 - 667897 + | hypothetical protein TERM 731 667933 - 667915 - f 71 -7.4 -3.6284 | opp_overlap 667915 AACTACTATTTTAAA GCCGAG CTAACCC CTCGGC TTTTTTGTATGTATT TERM 732 667915 - 667933 + F 93 -7.4 -5.46276 | opp_overlap 667915 AACTACTATTTTAAA GCCGAG CTAACCC CTCGGC TTTTTTGTATGTATT VFMJ11_A0577 668068 - 669264 + | TraF protein VFMJ11_A0578 669343 - 669879 + | molybdenum cofactor biosynthesis protein TERM 733 669913 - 669884 - T 75 -8 -3.71308 | opp_overlap 669890, overlap 669890 AAGCAAAATAATCAA TACAAAGCCAAC GTAACT GTTGGCTTTTTA ACATCCTTTTTCTTT TERM 734 669890 - 669907 + T 83 -7.7 -4.652 | opp_overlap 669890 669884 AATAATCAATACAAA GCCAACG TAAC TGTTGGC TTTTTAACATCCTTT TERM 735 669907 - 669890 - T 78 -7 -4.30231 | opp_overlap 669890, overlap 669884 AATAATCAATACAAA GCCAAC GTAACT GTTGGC TTTTTAACATCCTTT VFMJ11_A0579 670135 - 669911 - | hypothetical protein TERM 736 670237 - 670221 - H 74 -5.2 -4.72007 | TCGGATGAAAATAAA CATTCA AGTTA TGAATG GTAACTAATAAATCT VFMJ11_A0580 670452 - 670826 + | sensory box/ggdef family protein VFMJ11_A0581 670844 - 672415 + | sensory box/ggdef family protein TERM 737 672666 - 672640 - T 75 -8.2 -3.84825 | opp_overlap 672640 TGTATCTATATTAAA CCAAGATAAA TCAAGTG TTTATCTTGG TTTTTTTATACTTGA TERM 738 672640 - 672666 + T 95 -8.9 -5.71983 | opp_overlap 672640 TGTATCTATATTAAA CCAAGATAAAT CAAGT GTTTATCTTGG TTTTTTTATACTTGA VFMJ11_A0582 675383 - 672705 - | acetyltransferase family protein TERM 739 674745 - 674761 + g 81 -6.6 -4.67353 | opp_overlap 674745 674747 AATTGAATCTATATA CAGAAG AATGG CTTCTG TTTTTGAATCGGTAC TERM 740 675502 - 675492 - H 84 -4 -5.73672 | AAATAACCAAAAAAA TCAA GTA TTGA GCACAAAGATATGAG TERM 741 675836 - 675810 - g 70 -8 -3.66908 | overlap 675795 675806 675812 675813 675821 CTGTTGTAAAATTAA CACCAGAAGAAG CGG CTTCTCCTGAAG CAACAGACGCTGCCG TERM 742 675834 - 675812 - g 72 -9.2 -3.41359 | overlap 675795 675810 675806 675813 675821 GTTGTAAAATTAACA CCAGAAGAAG CGG CTTCTCCTGA AGCAACAGACGCTGC TERM 743 675833 - 675813 - g 72 -10.5 -2.64333 | overlap 675795 675812 675810 675806 675821 TTGTAAAATTAACAC CAGAAGAAG CGG CTTCTCCTG AAGCAACAGACGCTG VFMJ11_A0583 675608 - 676174 + | lipoprotein, putative TERM 744 676177 - 676208 + F 90 -8.1 -4.91109 | opp_overlap 676181, overlap 676178 676181 TAAGTTAAATTAATC ATAATCGGTGCAT CTAAAT ATGCACCGATTGC TTTTTATAGTGAAAA TERM 745 676178 - 676207 + F 90 -11.6 -3.54183 | opp_overlap 676181, overlap 676177 676181 AAGTTAAATTAATCA TAATCGGTGCAT CTAAAT ATGCACCGATTG CTTTTTATAGTGAAA TERM 746 676181 - 676204 + F 90 -11.1 -3.89607 | opp_overlap 676181, overlap 676178 676177 TTAAATTAATCATAA TCGGTGCAT CTAAAT ATGCACCGA TTGCTTTTTATAGTG TERM 747 676204 - 676181 - f 89 -11.1 -3.58914 | opp_overlap 676178 676177 676181 TTAAATTAATCATAA TCGGTGCAT CTAAAT ATGCACCGA TTGCTTTTTATAGTG TERM 748 676898 - 676911 + G 86 -8.1 -4.89852 | opp_overlap 676897 CCAGGTGAAGTAACG GCACC TGAT GGTGC TTTTTATACATATGA VFMJ11_A0584 676226 - 677218 + | D-alanine--D-alanine ligase TERM 749 677264 - 677235 - T 90 -10.9 -3.76373 | opp_overlap 677242, overlap 677242 TTCGTAAGACTTAAA TAAAAAAGCCTGA TAAT TCAGGCTTTTTTT GTTTTAAATACAGAT TERM 750 677257 - 677242 - T 95 -9 -5.65927 | opp_overlap 677242, overlap 677235 GACTTAAATAAAAAA GCCTGA TAAT TCAGGC TTTTTTTGTTTTAAA TERM 751 677242 - 677257 + T 100 -9 -6.09196 | opp_overlap 677242 677235 GACTTAAATAAAAAA GCCTGA TAAT TCAGGC TTTTTTTGTTTTAAA VFMJ11_A0585 678166 - 677252 - | DNA integration/recombination/invertion protein TERM 752 678469 - 678449 - g 71 -7.5 -3.90291 | overlap 678450 ATTGGTGGAATGAAA CTGGCACGA TTA TCGAGCCAA AAGAATTTGGAGACA VFMJ11_A0586 678310 - 678660 + | minor tail protein yciH 678700 - 679011 + | putative translation initiation factor SUI1 TERM 753 679030 - 679081 + F 74 -6.2 -4.4767 | gap 1, opp_overlap 679032, overlap 679032 679078 AACGTTGTTAGAGTT AAGCTAATAATCAAACGATGAATAC GAA GTATT-ATTGAATGATTATTAGCTA TTTTATGGTAAATAG TERM 754 679032 - 679079 + F 79 -8.8 -3.84585 | gap 1, opp_overlap 679032, overlap 679030 679078 CGTTGTTAGAGTTAA GCTAATAATCAAACGATGAATAC GAA GTATT-ATTGAATGATTATTAGC TATTTTATGGTAAAT VFMJ11_A0588 679402 - 679680 + | hypothetical protein TERM 755 679690 - 679714 + T 93 -8.6 -4.67608 | opp_overlap 679692, overlap 679692 679713 TGTTAGCTAGTTACT AAGAGCCAGT TTTGT ACTGGCTCTA TTTTATATTGAAATA TERM 756 679712 - 679692 - T 87 -11.2 -3.18912 | opp_overlap 679692 679690 TTAGCTAGTTACTAA GAGCCAGT TTTGT ACTGGCTC TATTTTATATTGAAA TERM 757 679692 - 679712 + T 93 -11.2 -3.94773 | opp_overlap 679692, overlap 679690 TTAGCTAGTTACTAA GAGCCAGT TTTGT ACTGGCTC TATTTTATATTGAAA VFMJ11_A0589 680003 - 679815 - | hypothetical protein VFMJ11_A0590 680138 - 680016 - | hypothetical protein VFMJ11_A0591 680174 - 680740 + | PhnA protein TERM 758 680798 - 680758 - T 72 -9.3 -2.76737 | gap 1, opp_overlap 680759 680770, overlap 680761 680770 GATTAATTGCTAAAG TGACAT-AAAAAAGACGC GAATAT GCGTCTTTTTTCATGTCT GTATATTATTGAAAT TERM 759 680759 - 680797 + T 93 -13.5 -3.19509 | gap 1, opp_overlap 680758 680761 680770, overlap 680770 ATTAATTGCTAAAGT GACAT-AAAAAAGACGCG AATA TGCGTCTTTTTTCATGTC TGTATATTATTGAAA TERM 760 680795 - 680761 - T 75 -9.6 -2.65279 | gap 1, opp_overlap 680759 680770, overlap 680758 680770 TAATTGCTAAAGTGA CAT-AAAAAAGACGC GAATAT GCGTCTTTTTTCATG TCTGTATATTATTGA TERM 761 680785 - 680770 - T 84 -6.1 -5.38951 | opp_overlap 680759 680770, overlap 680761 680758 AAGTGACATAAAAAA GACGC GAATAT GCGTC TTTTTTCATGTCTGT TERM 762 680770 - 680785 + T 85 -6.8 -5.25893 | opp_overlap 680770 680761 680758, overlap 680759 AAGTGACATAAAAAA GACGCG AATA TGCGTC TTTTTTCATGTCTGT VFMJ11_A0592 681472 - 680816 - | hypothetical protein TERM 763 681560 - 681580 + r 72 -8.3 -3.35934 | opp_overlap 681560 TACAGATACAAAAAA GCCGAGA CATTACA TCTCGGC TTATCGACTCTATCA TERM 764 681580 - 681560 - R 100 -9.7 -5.4492 | opp_overlap 681560 TACAGATACAAAAAA GCCGAGACA TTA CATCTCGGC TTATCGACTCTATCA VFMJ11_A0593 682982 - 681606 - | NAD(P) transhydrogenase subunit beta pntA 684550 - 682994 - | NAD(P)(+) transhydrogenase (AB-specific), alpha subunit TERM 765 683495 - 683506 + g 80 -4.4 -5.30616 | TTCAAAATCGATGTT GATG TTGC CATC TTTTTCTTTACATAA TERM 766 684521 - 684505 - G 75 -10.1 -3.14344 | TAGGCGTTGCAGCAA CACGGGT TTC ACCCGCG AAGACTTCTCTAGGT TERM 767 684729 - 684717 - R 74 -3.3 -5.24129 | opp_overlap 684717 TTTGGTGACAAAAAA GAGGT CAA ACCAC TAATTGTTACTTATT TERM 768 684766 - 684784 + r 74 -3.2 -5.22312 | opp_overlap 684770, overlap 684770 CAAGAATAAGTCGAA AAAACAAT CAA ATTGTTTA TTTTTTAATATCAAT TERM 769 684770 - 684780 + r 73 -4 -5.10526 | opp_overlap 684770, overlap 684766 AATAAGTCGAAAAAA CAAT CAA ATTG TTTATTTTTTAATAT TERM 770 684780 - 684770 - R 73 -4 -5.11937 | opp_overlap 684766 684770 AATAAGTCGAAAAAA CAAT CAA ATTG TTTATTTTTTAATAT VFMJ11_A0595 685084 - 684809 - | transcriptional activator HlyU TERM 771 685109 - 685078 - G 72 -3.1 -5.08169 | ATAGACGTGAAAAAA GCCCCATTTCA TTTTCCTTTT TGAAATAAGGC TTATTATACATGAGA VFMJ11_A0596 685718 - 685164 - | OmpA family protein VFMJ11_A0597 686952 - 685828 - | integral membrane protein TERM 772 686615 - 686632 + g 70 -2.7 -5.02476 | overlap 686612 TAACCAACCGTTGGC GCTTC TCCTAATT GAAGC TTTTTTGAAAACTCT VFMJ11_A0598 688080 - 686956 - | daunorubicin resistance transmembrane protein VFMJ11_A0599 689083 - 688100 - | multidrug resistance protein A VFMJ11_A0600 690446 - 689088 - | type I secretion outer membrane protein TERM 773 690501 - 690521 + r 78 -6.9 -4.33165 | opp_overlap 690502, overlap 690502 TAGATGCAAAAAAAA AGCTTATCT ATA AGATAAGCC TTTTAATACATTTAA TERM 774 690502 - 690520 + r 83 -10.4 -3.19176 | opp_overlap 690502, overlap 690501 AGATGCAAAAAAAAA GCTTATCT ATA AGATAAGC CTTTTAATACATTTA TERM 775 690520 - 690502 - R 100 -10.4 -6.13 | opp_overlap 690501 690502 AGATGCAAAAAAAAA GCTTATCT ATA AGATAAGC CTTTTAATACATTTA VFMJ11_A0601 691004 - 690543 - | transcriptional regulator, TetR family TERM 776 691735 - 691720 - g 70 -3.4 -4.85599 | opp_overlap 691694 TGCAGTGCAGAAAAA TTAATT TATG AATTAA AAACACGTTCTCTAC VFMJ11_A0602 691462 - 691758 + | hypothetical protein TERM 777 691806 - 691781 - T 91 -4.8 -5.79588 | gap 2, opp_overlap 691781 TCAAAATGAAAAAAA GGCCCTAACTAG TCAC CTAG--AGGGCC TTTTTTATTAATTCT TERM 778 691781 - 691806 + T 83 -4.8 -5.57396 | gap 2, opp_overlap 691781 TCAAAATGAAAAAAA GGCCCTAACTAG TCAC CTAG--AGGGCC TTTTTTATTAATTCT VFMJ11_A0603 692034 - 691828 - | hypothetical protein TERM 779 692087 - 692105 + H 71 -7.5 -3.70902 | TGACACATTTGTCGC TTCGGTA TCCAT TACCGAA TTTCACTATAACAAA VFMJ11_A0604 692232 - 692846 + | leucine-rich repeat protein TERM 780 693015 - 693003 - g 73 -7.7 -3.89435 | TCCAAACAAGTTAAA GCGTT AGA AACGC GATTAGATTGCCAAC VFMJ11_A0605 692886 - 693809 + | transcriptional regulator, LysR family VFMJ11_A0606 694938 - 693811 - | glycerol-3-phosphate O-acyltransferase TERM 781 694439 - 694417 - G 71 -7 -3.98627 | opp_overlap 694423 GTATGAAGATAATAA GCCTAATGCT TGA AGCATTTGAC GTGGTGCTTTTGCTG VFMJ11_A0607 695119 - 695739 + | hypothetical protein VFMJ11_A0608 696285 - 695776 - | hypothetical protein VFMJ11_A0609 696804 - 696292 - | nicotinic acid mononucleotide adenylyltransferase TERM 782 696336 - 696324 - GH 72 -9.1 -2.68823 | opp_overlap 696324 696323, overlap 696323 GTTTCTTTATATAAC CCGCA ACA TGCGG TGTTGTTAAGTGGCT TERM 783 696324 - 696336 + gH 79 -9.1 -3.42256 | opp_overlap 696323 696324, overlap 696323 GTTTCTTTATATAAC CCGCA ACA TGCGG TGTTGTTAAGTGGCT TERM 784 696595 - 696610 + gH 83 -7.6 -4.81083 | AATCTCTTTTTCTAA TGTCGA GATT TCGACA TTTTTGATAATTAAA VFMJ11_A0610 696777 - 696932 + | hypothetical protein nadE 696959 - 697789 + | NAD+ synthetase VFMJ11_A0611 697971 - 697786 - | endo/excinuclease domain protein TERM 785 697819 - 697852 + g 100 -9.7 -5.26918 | opp_overlap 697821, overlap 697821 TAATGGTATTTGATT AATGACTAAGGCTTC TTTT GAGGCTTTAGTCATC TTTTTTATACGATAT TERM 786 697821 - 697850 + g 100 -12.3 -4.26475 | opp_overlap 697821, overlap 697819 ATGGTATTTGATTAA TGACTAAGGCTTC TTTT GAGGCTTTAGTCA TCTTTTTTATACGAT VFMJ11_A0613 698723 - 698070 - | protein VV2_0756 VFMJ11_A0614 698875 - 699294 + | hypothetical protein TERM 787 699508 - 699486 - g 72 -9.2 -3.33009 | opp_overlap 699492, overlap 699492 GAAAATTCGTGATAA CCAAAAGCGT GTA ACGCTTCTAG AAAACATGCTTGATT TERM 788 699502 - 699492 - g 79 -6.8 -4.48987 | opp_overlap 699492, overlap 699486 TCGTGATAACCAAAA GCGT GTA ACGC TTCTAGAAAACATGC VFMJ11_A0615 699394 - 699702 + | protein VV2_0759 TERM 789 699725 - 699743 + T 100 -13.2 -6.02919 | opp_overlap 699725 TTTATGATGAAAAAA GGAGGCTA AAT TAGCCTCC TTTTTTTGTTTATAC TERM 790 699743 - 699725 - T 100 -13.2 -5.1861 | opp_overlap 699725 TTTATGATGAAAAAA GGAGGCTA AAT TAGCCTCC TTTTTTTGTTTATAC VFMJ11_A0616 700209 - 699766 - | response regulator receiver domain protein VFMJ11_A0617 701213 - 700209 - | two component response regulator TERM 791 701327 - 701299 - R 80 -11.1 -2.55779 | opp_overlap 701298 701305, overlap 701305 GAATATATAAGACAT GAAAAAGGAGCCT TAA AAGCTCCTTTGTC GTCAGTTACTTGATG TERM 792 701321 - 701305 - R 95 -8.7 -4.88711 | opp_overlap 701298 701305, overlap 701299 ATAAGACATGAAAAA GGAGCCT TAA AAGCTCC TTTGTCGTCAGTTAC VFMJ11_A0618 701714 - 701349 - | NADH:ubiquinone oxidoreductase subunit 2 TERM 793 702013 - 701994 - R 95 -8.6 -5.75599 | opp_overlap 701994 TAAAGCACAAAAAAA GCACCCTA TTAC TAGAGTGC TTTTAAAATTAGTTA TERM 794 701994 - 702013 + r 71 -6.4 -4.21768 | opp_overlap 701994 TAAAGCACAAAAAAA GCACCCTA TTAC TAGAGTGC TTTTAAAATTAGTTA VFMJ11_A0619 702589 - 702038 - | ABC-type multidrug transport system, ATPase and permease component VFMJ11_A0620 702906 - 704144 + | oxalate/formate antiporter TERM 795 704193 - 704160 - f 80 -6.7 -4.69053 | opp_overlap 704165, overlap 704165 TATTATTCAATAAAA TCAAAGCCCGTTTGC AATT GTAAACGGGCTTTTT TTGTTTTTTTTCTCT TERM 796 704165 - 704188 + F 100 -13.2 -6.32976 | opp_overlap 704160 704165 TTCAATAAAATCAAA GCCCGTTTGC AATT GTAAACGGGC TTTTTTTGTTTTTTT TERM 797 704188 - 704165 - f 100 -11 -4.3295 | opp_overlap 704165, overlap 704160 TTCAATAAAATCAAA GCCCGTTTGC AATT GTAAACGGGC TTTTTTTGTTTTTTT TERM 798 704500 - 704483 - g 71 -4.1 -4.8622 | CCTGCCAATTAAAAA TGTCTTC AGCG GAAGGCA TCGATCGTGGTGCGC TERM 799 704995 - 704980 - g 73 -6.8 -4.30978 | GGTAATTCATTAAAA GAGCAG CTTA CCGCTC GTTACCTATATGAAC VFMJ11_A0621 704254 - 706608 + | Cti TERM 800 706656 - 706632 - f 72 -5.8 -4.28254 | opp_overlap 706632 706645 706654, overlap 706645 TTTGAATATTGAAAA GTGAGTGT ACACAGGAG ACACTCAC CTTTTTAGGGGTATT VFMJ11_A0623 706679 - 707314 + | hypothetical protein VFMJ11_A0622 707596 - 707306 - | hypothetical protein VFMJ11_A0624 709276 - 707873 - | oxidoreductase TERM 801 709445 - 709417 - R 95 -12.6 -3.66095 | opp_overlap 709413 709419, overlap 709405 709419 709444 AAACTGTTATTCAAA CAGTTACCCACA GAAAT TGTGGATAACTG TGGGTAACTTTAACC TERM 802 709419 - 709453 + r 89 -10.8 -3.53012 | opp_overlap 709417 709419 709444, overlap 709413 ACTGTTATTCAAACA GTTACCCACAGAAATT GTG GATAACTGTGGGTAAC TTTAACCCCACAAGG TERM 803 709453 - 709419 - R 81 -10.1 -3.40775 | opp_overlap 709413 709419, overlap 709417 709444 ACTGTTATTCAAACA GTTACCCACAGAAAT TGTGG ATAACTGTGGGTAAC TTTAACCCCACAAGG VFMJ11_A0625 709688 - 709455 - | hypothetical protein VFMJ11_A0626 709852 - 711498 + | hypothetical protein TERM 804 711519 - 711537 + F 93 -8.1 -5.4251 | opp_overlap 711519 CACAACTTTTATCAA GCCTCCT TCTAT AGGGGGC TTTTTTGTATATAAC VFMJ11_A0627 711824 - 713140 + | nucleoside recognition domain protein TERM 805 713167 - 713186 + T 100 -10 -5.86332 | opp_overlap 713167 TCTCACCTATTTAAA GCGATCTC TTAT GAGGTCGC TTTTTTTTGACTTAA TERM 806 713186 - 713167 - T 71 -7.8 -3.6682 | opp_overlap 713167 TCTCACCTATTTAAA GCGATCTC TTAT GAGGTCGC TTTTTTTTGACTTAA VFMJ11_A0628 713345 - 713175 - | hypothetical protein TERM 807 713512 - 713491 - R 95 -5.9 -6.0427 | opp_overlap 713491 ATTAGATAAAAAAAA GGCTTAG TAATAAAC CTAAGCC TTTCAACACTTATAA VFMJ11_A0629 713787 - 713539 - | glutathione peroxidase VFMJ11_A0630 713984 - 714217 + | hypothetical protein TERM 808 714258 - 714233 - T 78 -10.6 -2.7535 | opp_overlap 714232 714233 TGCTGTAATATATGA TTCTAGCCTT TTAATT AAGGCTAGAA ATTCGTTTATAAATA TERM 809 714233 - 714258 + T 78 -10.6 -2.76711 | opp_overlap 714233, overlap 714232 TGCTGTAATATATGA TTCTAGCCTT TTAATT AAGGCTAGAA ATTCGTTTATAAATA VFMJ11_A0631 714819 - 714289 - | hypothetical protein TERM 810 714888 - 714870 - R 82 -5.2 -5.243 | overlap 714871 TAAAGCACCAAAAAA GCCACCAA AAA CTGGTGGG AAGATTATTGTAACG TERM 811 714887 - 714871 - R 79 -8.7 -3.72953 | overlap 714870 AAAGCACCAAAAAAG CCACCAA AAA CTGGTGG GAAGATTATTGTAAC VFMJ11_A0632 715589 - 715014 - | lipoprotein, putative TERM 812 715938 - 715969 + r 100 -11.8 -4.39166 | opp_overlap 715939, overlap 715939 GATTTACTTGATACC ACCTTTGTATTATC TATA GATAATACAAAGGC TTTTAATCTGTGAGG TERM 813 715939 - 715968 + r 100 -15.3 -3.23018 | opp_overlap 715939, overlap 715938 ATTTACTTGATACCA CCTTTGTATTATC TATA GATAATACAAAGG CTTTTAATCTGTGAG TERM 814 715968 - 715939 - R 100 -15.3 -2.63715 | opp_overlap 715938 715939 ATTTACTTGATACCA CCTTTGTATTATC TATA GATAATACAAAGG CTTTTAATCTGTGAG VFMJ11_A0633 716387 - 715989 - | hypothetical protein VFMJ11_A0634 716990 - 716577 - | hypothetical protein VFMJ11_A0635 717474 - 717154 - | sequestrin, putative TERM 815 717695 - 717669 - R 100 -15.2 -4.208 | opp_overlap 717671 CCCTAAAATGAGAAA CACTCGGCAAAC TAA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 816 717671 - 717693 + r 84 -12 -2.81642 | opp_overlap 717669 CTAAAATGAGAAACA CTCGGCAAAC TAA GATTGCCGAG TGTAGTAAATCGTGT VFMJ11_A0636 718286 - 717729 - | hypothetical protein VFMJ11_A0637 718868 - 718731 - | hypothetical protein VFMJ11_A0638 719527 - 718925 - | cell filamentation protein fic VFMJ11_A0639 719975 - 719520 - | hypothetical protein VFMJ11_A0640 720405 - 720226 - | RNA methyltransferase fusion protein VFMJ11_A0641 720990 - 720739 - | hypothetical protein VFMJ11_A0642 721170 - 721286 + | hypothetical protein TERM 817 721445 - 721410 - T 73 -8.4 -3.66401 | overlap 721408 CTGATAAACCAAATA TCCTCGCAACAACT GGGATTGA AAATGTTGCGAGGA AAACACAGATGCAGG TERM 818 721761 - 721736 - T 78 -7.5 -4.208 | CCTTAAAATGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0643 722585 - 721794 - | hypothetical protein VFMJ11_A0644 723539 - 723697 + | hypothetical protein TERM 819 723919 - 723930 + T 73 -4.4 -4.87318 | TATGCCGATTCTTTC TGGA GCAT TCCA TTTTTCACTTTTCGA VFMJ11_A0645 724457 - 723903 - | hypothetical protein VFMJ11_A0646 724698 - 724988 + | hypothetical protein TERM 820 725681 - 725655 - T 100 -13 -4.208 | opp_overlap 725657, overlap 725648 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0647 726548 - 725706 - | hypothetical protein VFMJ11_A0648 727285 - 726695 - | acetyltransferase, gnat family VFMJ11_A0649 727755 - 727874 + | hypothetical protein TERM 821 727964 - 727938 - f 100 -15.2 -4.208 | opp_overlap 727940, overlap 727931 TCCTAAAACGAGAAA CACTCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 822 727940 - 727962 + F 84 -12 -2.81642 | opp_overlap 727931 727938 CTAAAACGAGAAACA CTCGGCAAAC TGA GATTGCCGAG TGTAGTAAATCGTGT TERM 823 728251 - 728267 + G 76 -2.1 -5.38249 | opp_overlap 728253, overlap 728253 TGCTTGCAACGAACT AACCGAG AAA CACGGTC TTTTTTCTGATTCAT VFMJ11_A0650 728051 - 728296 + | CcdB antidote CcdA VFMJ11_A0651 728297 - 728614 + | CcdB VFMJ11_A0652 730113 - 729307 - | restriction endonuclease TERM 824 729500 - 729520 + g 70 -8.9 -3.1462 | opp_overlap 729504, overlap 729498 729497 TGCTGAAAATTACTA GCAACGGGG TTA CCCTGCTGC TCCTTTTGATGACTT TERM 825 729689 - 729711 + g 75 -2.8 -5.30686 | gap 1, opp_overlap 729689, overlap 729693 GAGTGCGACCAATAA CGATCTTCA AGTAGG TGAAG-TCG TTTTTTATACATCTT VFMJ11_A0653 730309 - 730184 - | hypothetical protein VFMJ11_A0654 730529 - 730374 - | hypothetical protein VFMJ11_A0655 731660 - 730845 - | hypothetical protein TERM 826 731784 - 731759 - R 78 -7.5 -4.208 | overlap 731752 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG higA 732112 - 731819 - | addiction module antidote protein, HigA family VFMJ11_A0657 732390 - 732112 - | plasmid maintenance system killer protein VFMJ11_A0658 733096 - 732566 - | hypothetical protein VFMJ11_A0659 733681 - 733373 - | hypothetical protein VFMJ11_A0660 734704 - 734492 - | hypothetical protein TERM 827 734944 - 734918 - R 100 -13 -4.208 | opp_overlap 734920, overlap 734911 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0661 735200 - 734991 - | hypothetical protein VFMJ11_A0662 736150 - 735479 - | topoisomerase-associated Zn-finger domain protein VFMJ11_A0663 736979 - 736344 - | beta-phosphoglucomutase TERM 828 736378 - 736398 + g 81 -2.6 -5.64006 | overlap 736381 AAATCAGATATAGCT TGCTTTGA TAAGC TCAAATCA TTTTTTTGATTAAAT VFMJ11_A0664 737552 - 737136 - | GCN5-related N-acetyltransferase TERM 829 737215 - 737199 - G 71 -3.7 -4.88405 | overlap 737201 AATGTCCAAAGAAAA TTGGTAA CAG TTACCTA CAACATTTTTTGTTG VFMJ11_A0665 738735 - 738367 - | hypothetical protein VFMJ11_A0666 739333 - 739166 - | hypothetical protein VFMJ11_A0667 740903 - 739317 - | hypothetical protein TERM 830 741015 - 740990 - R 78 -7.5 -4.208 | overlap 740983 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0668 741839 - 741048 - | hypothetical protein VFMJ11_A0669 742500 - 742036 - | asch domain superfamily protein TERM 831 742620 - 742594 - R 89 -9.4 -4.208 | CCTTAAAACGAGAAA CACCCAGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0670 743758 - 742655 - | putative prophage protein TERM 832 743587 - 743597 + g 85 -6.8 -5.10461 | TTAACTCATCTCCTT GCAC TTT GTGC TTTTTCTTCAATACA VFMJ11_A0671 744711 - 743902 - | hypothetical protein TERM 833 744244 - 744254 + g 71 -4 -4.95896 | ATGATCTAATTTCAA TGAA GCA TTCA TTTTTATAGATTTAT TERM 834 744339 - 744329 - G 71 -4 -4.95155 | CTTACATTAGAAAAA TCAT CTA ATGA AGAAATCGAGGCACG VFMJ11_A0672 745427 - 744837 - | hypothetical protein VFMJ11_A0673 746059 - 745526 - | hypothetical protein TERM 835 746170 - 746144 - R 100 -15.2 -4.208 | opp_overlap 746146, overlap 746137 CCTTAAAACGAGAAA CACTCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 836 746146 - 746168 + r 84 -12 -2.81642 | opp_overlap 746137 746144 TTAAAACGAGAAACA CTCGGCAAAC TGA GATTGCCGAG TGTAGTAAATCGTGT VFMJ11_A0674 746887 - 746195 - | hypothetical protein VFMJ11_A0675 747198 - 747025 - | membrane-fusion protein TERM 837 747666 - 747680 + r 72 -5.8 -4.32177 | overlap 747652 CTGGTAACTCATTAT CATTAT TTA ATAATG TTTATTCTGCAATAA VFMJ11_A0676 748008 - 747682 - | membrane-fusion protein VFMJ11_A0677 749511 - 748747 - | hypothetical protein TERM 838 749279 - 749295 + g 88 -10.9 -4.08064 | AACGAGATATTTATT CCAGTGA TAG TCACTGG TTTTCCGCCAGAATT VFMJ11_A0678 750108 - 749644 - | asch domain superfamily protein VFMJ11_A0679 750684 - 750271 - | hypothetical protein VFMJ11_A0680 751255 - 751374 + | hypothetical protein VFMJ11_A0681 751895 - 751380 - | hypothetical protein VFMJ11_A0682 751930 - 752067 + | hypothetical protein TERM 839 753127 - 753102 - T 78 -7.5 -4.208 | overlap 753095 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGCAAATCGTGTTG VFMJ11_A0683 753712 - 753152 - | hypothetical protein TERM 840 753825 - 753800 - R 78 -7.5 -4.208 | overlap 753793 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0684 754242 - 753850 - | hypothetical protein VFMJ11_A0685 754260 - 754379 + | hypothetical protein TERM 841 754499 - 754474 - T 100 -12.7 -4.208 | gap 1, opp_overlap 754476, overlap 754467 CCTTAAAACGAGAAA CACTCGGCAATC TGA GAT-GCCGAGTG TAGTAAATCGTGTTG TERM 842 754476 - 754497 + T 73 -9.5 -2.81642 | gap 1, opp_overlap 754467 754474 TTAAAACGAGAAACA CTCGGCAATC TGA GAT-GCCGAG TGTAGTAAATCGTGT VFMJ11_A0686 755015 - 754644 - | lipoprotein, putative VFMJ11_A0687 755271 - 755519 + | stability protein StbD, putative VFMJ11_A0688 755509 - 755793 + | toxin RelE TERM 843 755950 - 755976 + T 72 -5.9 -4.37886 | overlap 755951 CTTTCGACTTGGCCA ACTTGGTAAAG AACTG CTTTGCCAAGA TTTTCTAAGCCCTGA TERM 844 755951 - 755975 + T 77 -9.4 -3.2241 | overlap 755950 TTTCGACTTGGCCAA CTTGGTAAAG AACTG CTTTGCCAAG ATTTTCTAAGCCCTG VFMJ11_A0689 757257 - 756505 - | NAD dependent epimerase/dehydratase family protein VFMJ11_A0690 757835 - 757425 - | lactoylglutathione lyase VFMJ11_A0691 757876 - 758028 + | hypothetical protein TERM 845 759366 - 759388 + G 77 -10.6 -2.83073 | opp_overlap 759363 759364 759372, overlap 759365 TGTTGTAATAAACCG CCAAAAGGTG GCG CACCTCTTGG ATTATTACTAAAAGT TERM 846 759382 - 759372 - g 73 -6.8 -4.18763 | opp_overlap 759366 759365, overlap 759363 759364 AATAAACCGCCAAAA GGTG GCG CACC TCTTGGATTATTACT VFMJ11_A0692 759318 - 759452 + | hypothetical protein TERM 847 759526 - 759514 - T 82 -4.1 -5.52909 | TAAGACGTAAAAAAA CTGAT ATA ACCAG ACCACTTATCTATTA TERM 848 759932 - 759907 - T 83 -7.5 -4.73448 | overlap 759908 ACATACATTTAAAAA GTGGCCCAGCT TCCA ATCTGGGCCAA AAAACCACTATTTCA TERM 849 759931 - 759908 - T 87 -11 -3.42985 | overlap 759907 CATACATTTAAAAAG TGGCCCAGCT TCCA ATCTGGGCCA AAAAACCACTATTTC TERM 850 760022 - 759995 - T 81 -7.9 -4.41494 | CAGCTCCAATCAAAA TTATTACGGTT GGAGTG AACCGTAACAA AAATAGGTTATAAGA VFMJ11_A0693 761122 - 760280 - | hypothetical protein TERM 851 761165 - 761181 + r 73 -3.7 -5.06016 | opp_overlap 761165, overlap 761156 AATGACCTATATTAA TAGTCTC ATG GAAACTA TTTTATTTCTCTGAT VFMJ11_A0694 762008 - 761376 - | translocator protein, LysE family TERM 852 761619 - 761608 - G 76 -3.6 -5.2189 | overlap 761600 CTAACGACGAAAAAA CCCG TTTT CGGA TTTAAAATACTGGTG VFMJ11_A0695 763054 - 762167 - | hypothetical protein TERM 853 762722 - 762742 + g 79 -5.5 -4.95211 | overlap 762724 762730 ATGTGACTTATCTGG GTTATTTCT AAA AGAAATACC TTTTATTGATTTTTT VFMJ11_A0696 763616 - 763209 - | hypothetical protein TERM 854 763470 - 763459 - G 79 -5.8 -4.8543 | GAACCTTCACAAAAA TCCG CCCG CGGA TCATACTGAATGCAA TERM 855 763527 - 763509 - G 73 -6.8 -4.30177 | overlap 763510 TATTACAGGAATAAA CTCAGATT CAA AATCTGAA ATACAACGCTCAATT VFMJ11_A0697 764558 - 763770 - | phosphotransferase family protein VFMJ11_A0698 765252 - 764707 - | hypothetical protein TERM 856 765466 - 765456 - R 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA AAT TAGC GAACAAAAGAAACGT VFMJ11_A0699 765845 - 765729 - | hypothetical protein TERM 857 765787 - 765756 - G 71 -5.2 -4.63179 | AAAGAAGAAGGAAAA CCGCCCAACTTTCA CATT TAAAAATCGAACGG TTCTATCGCCGAACT VFMJ11_A0700 767008 - 766553 - | spermine/spermidine acetyltransferase VFMJ11_A0701 767610 - 767191 - | hypothetical protein VFMJ11_A0702 768445 - 768747 + | hypothetical protein TERM 858 769396 - 769384 - g 87 -4.8 -5.4477 | AAACCGGTAAAAAAA GGGA ATACG TCCC ATACTGAGTCCTTTA TERM 859 770151 - 770130 - g 93 -13.1 -3.30443 | TCATTATGACAGTAA TCCAACAGC GTTA GCTGTTGGA GATAAACTTGTCGTT VFMJ11_A0703 769012 - 771408 + | LysM domain protein TERM 860 772085 - 772057 - g 71 -6.2 -4.29348 | opp_overlap 772054 772065 GACACAAAAGAAGAA TGTAAAGATGAA TATTG TTCATATTTACA GACTTTAGTAGATGA VFMJ11_A0704 771436 - 772128 + | hypothetical protein TERM 861 772136 - 772167 + T 73 -8.9 -3.21593 | opp_overlap 772137, overlap 772134 772137 772139 ATAATTAATATCATA ATAGCTCTCAAAT ACAAAC ATTTGAGAGCTAA TCTTATGAGAAGATA TERM 862 772137 - 772166 + T 86 -12.4 -2.52742 | opp_overlap 772137, overlap 772136 772134 772139 TAATTAATATCATAA TAGCTCTCAAAT ACAAAC ATTTGAGAGCTA ATCTTATGAGAAGAT TERM 863 772166 - 772137 - T 95 -13.1 -3.54602 | opp_overlap 772137 772136 772134 772139 TAATTAATATCATAA TAGCTCTCAAATA CAAA CATTTGAGAGCTA ATCTTATGAGAAGAT TERM 864 772139 - 772164 + T 79 -10.6 -2.80074 | opp_overlap 772137, overlap 772137 772136 772134 ATTAATATCATAATA GCTCTCAAAT ACAAAC ATTTGAGAGC TAATCTTATGAGAAG VFMJ11_A0705 772814 - 772305 - | hypothetical protein TERM 865 772672 - 772682 + g 73 -5.4 -4.56791 | opp_overlap 772654 TCCAACTTAGCAGCT CGAA GAT TTCG TTTATCTTTTTGAGT VFMJ11_A0706 773385 - 772975 - | lactoylglutathione lyase VFMJ11_A0707 773995 - 773612 - | hypothetical protein VFMJ11_A0708 774516 - 774052 - | asch domain superfamily protein VFMJ11_A0709 775586 - 775230 - | hypothetical protein TERM 866 775770 - 775745 - R 83 -7.5 -4.67697 | GCTTAAAACAAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0710 776659 - 775808 - | hypothetical protein TERM 867 776349 - 776371 + g 85 -9.2 -4.25256 | TGCAGTTTTTCATCT CGCGGTTTTA ATA TAAAACAGCG TTCTTTTCCTAAAGC VFMJ11_A0711 777616 - 776864 - | hypothetical protein TERM 868 776921 - 776931 + g 79 -5.4 -4.90266 | opp_overlap 776921 AGTATGATTTACAAG GTCT CTA AGAC TTTTTAATTCCTGAG TERM 869 777270 - 777283 + g 87 -3.1 -5.86332 | TCTGATTCAATTTCT GCAAT AACC GTTGC TTTTTTTTGAATTGC VFMJ11_A0712 778744 - 778319 - | hypothetical protein TERM 870 778956 - 778946 - R 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA AAT TAGC GAACAAAAGAACCGT VFMJ11_A0713 779970 - 779338 - | translocator protein, LysE family VFMJ11_A0714 780821 - 780129 - | hypothetical protein VFMJ11_A0715 781516 - 780956 - | hypothetical protein TERM 871 781651 - 781626 - R 83 -7.5 -4.67697 | CCTTAAAACAAGAAA CACCCGACAAC CTAA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0716 782074 - 781676 - | enolase VFMJ11_A0717 783046 - 782075 - | hypothetical protein TERM 872 783263 - 783253 - R 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA AAT TAGC GAACAAAAGAAACGT VFMJ11_A0718 783379 - 783254 - | hypothetical protein TERM 873 783304 - 783292 - G 70 -3.3 -4.98255 | GTTCAACTACAAAAA CTGCG AAA CGAAG CAATCCTTTTTCTAA VFMJ11_A0719 783448 - 783570 + | hypothetical protein VFMJ11_A0720 784376 - 783753 - | hypothetical protein VFMJ11_A0721 784985 - 784512 - | hypothetical protein TERM 874 784694 - 784708 + g 78 -7.2 -4.43911 | opp_overlap 784684 CTAAAGACTCCACGA CTAAAG TCT CTTTAG TTTTAATTAGCCTTT VFMJ11_A0722 785138 - 784986 - | hypothetical protein VFMJ11_A0723 785737 - 785135 - | hypothetical protein TERM 875 785563 - 785553 - G 71 -4 -4.99035 | TTATCTATATAAAAA TCAT CAT ATGA AATTCCATCTGTTCT TERM 876 785956 - 785938 - R 77 -6 -4.67353 | TTACCGATGTAAAAA CAAACGGC CTT ACCATTTG CTATCACTACGTTTT VFMJ11_A0724 786534 - 786172 - | hypothetical protein TERM 877 786642 - 786617 - R 78 -7.5 -4.208 | overlap 786610 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0725 787110 - 786667 - | acetyltransferase TERM 878 787245 - 787220 - R 78 -7.5 -4.208 | overlap 787213 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0726 788535 - 787270 - | hypothetical protein TERM 879 788641 - 788615 - H 100 -13 -4.208 | opp_overlap 788617, overlap 788608 CCTTAAAACGAGAAA CACCCGGCAAAC TGG GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0727 788876 - 789094 + | hypothetical protein VFMJ11_A0728 789700 - 789257 - | hypothetical protein VFMJ11_A0729 790378 - 789848 - | isochorismatase hydrolase TERM 880 790488 - 790463 - R 78 -7.5 -4.208 | overlap 790456 CCTTAAAACGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0730 790968 - 790522 - | transcription activator effector binding VFMJ11_A0731 791665 - 791144 - | hypothetical protein TERM 881 791784 - 791758 - R 75 -7.2 -4.208 | opp_overlap 791760 CCTTAAAACGAGAAA CACCTGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0732 793904 - 791817 - | Nuclease-related domain family protein TERM 882 793472 - 793491 + g 89 -6.6 -5.33866 | opp_overlap 793476 TATTTTCTAGCATTA TAAATTGT GATA ACAATTTA TTTTTTATGACTTTA TERM 883 794027 - 794002 - R 78 -7.5 -4.208 | CCTTAAAATGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0733 794215 - 794060 - | hypothetical protein VFMJ11_A0734 794619 - 794428 - | hypothetical protein VFMJ11_A0735 795560 - 795072 - | lipoprotein, putative VFMJ11_A0736 795783 - 795547 - | hypothetical protein VFMJ11_A0737 796725 - 796838 + | hypothetical protein TERM 884 797310 - 797285 - T 78 -7.5 -4.208 | CCTTAAAATGAGAAA CACCCGACAAC CTGA GATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0738 798171 - 797356 - | hypothetical protein VFMJ11_A0739 798350 - 798192 - | hypothetical protein VFMJ11_A0740 798733 - 798320 - | hypothetical protein TERM 885 798848 - 798822 - R 100 -15.2 -4.208 | opp_overlap 798824 CCCTAAAATGAGAAA CACTCGGCAAAC TAA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 886 798824 - 798846 + r 84 -12 -2.81642 | opp_overlap 798822 CTAAAATGAGAAACA CTCGGCAAAC TAA GATTGCCGAG TGTAGTAAATCGTGT VFMJ11_A0741 799412 - 798882 - | hypothetical protein TERM 887 800100 - 800074 - R 100 -13 -4.208 | opp_overlap 800076, overlap 800067 CCTTAAAACGAGAAA CACCCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0742 800991 - 800125 - | hypothetical protein VFMJ11_A0743 802551 - 801736 - | hypothetical protein TERM 888 802675 - 802650 - R 75 -6.9 -4.208 | gap 1, overlap 802643 CCTTAAAACGAGAAA CACCCGACAATC TGA GAT-GCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0744 803302 - 802700 - | hypothetical protein TERM 889 803263 - 803275 + g 76 -6.9 -4.39407 | ACACTTCTAGAACTC GCGCG AAT TGCGC TTTTACATTATTTAC VFMJ11_A0745 803850 - 803620 - | hypothetical protein VFMJ11_A0746 803974 - 804093 + | hypothetical protein VFMJ11_A0747 804772 - 804308 - | acetyltransferase VFMJ11_A0748 805465 - 804929 - | hypothetical protein VFMJ11_A0749 806803 - 806168 - | hypothetical protein TERM 890 806673 - 806685 + g 95 -2.7 -6.12328 | opp_overlap 806674, overlap 806674 TGTTCTTTTAGATAA TGATT TTT AATCG TTTTTTTTATATTAT VFMJ11_A0750 808208 - 806793 - | hypothetical protein VFMJ11_A0751 810650 - 810045 - | hypothetical protein VFMJ11_A0752 810917 - 811123 + | hypothetical protein TERM 891 811132 - 811158 + F 100 -12.4 -4.2704 | opp_overlap 811135, overlap 811135 GTCATAAACAATATA AAAGGAGAGCTA CTT TAGCTCTCCTTA TTTATTAATAGTAGA TERM 892 811155 - 811135 - f 100 -14.1 -4.86029 | opp_overlap 811135 811132 ATAAACAATATAAAA GGAGAGCTA CTT TAGCTCTCC TTATTTATTAATAGT TERM 893 811135 - 811155 + F 100 -14.1 -4.25016 | opp_overlap 811135, overlap 811132 ATAAACAATATAAAA GGAGAGCTA CTT TAGCTCTCC TTATTTATTAATAGT TERM 894 811652 - 811626 - f 100 -15.2 -4.208 | opp_overlap 811628 CCTTAAAACGATAAA CACTCGGCAAAC TGA GATTGCCGAGTG TAGTAAATCGTGTTG TERM 895 811628 - 811650 + F 84 -12 -2.81642 | opp_overlap 811626 TTAAAACGATAAACA CTCGGCAAAC TGA GATTGCCGAG TGTAGTAAATCGTGT VFMJ11_A0753 811786 - 812076 + | hypothetical protein VFMJ11_A0754 812693 - 812229 - | acetyltransferase VFMJ11_A0755 813863 - 812847 - | restriction endonuclease family TERM 896 813481 - 813501 + g 78 -3.9 -5.1861 | overlap 813482 GCAAGCATTGGCATA GGGTCAACG GAG CTTTGACCA TTTTTTACTGCTAGA TERM 897 813983 - 813957 - R 85 -8.6 -4.208 | opp_overlap 813959 CCTTAAAACGAGAAA CACCTGGCAACC TGA GGATGCCGAGTG TAGTAAATCGTGTTG VFMJ11_A0756 814796 - 814008 - | phosphotransferase family protein VFMJ11_A0757 815712 - 814960 - | hypothetical protein TERM 898 815017 - 815027 + g 79 -5.4 -4.90266 | opp_overlap 815017 AGTATGATTTACAAG GTCT CTA AGAC TTTTTAATTCCTGAG TERM 899 815366 - 815379 + g 87 -3.1 -5.86332 | TCTGATTCAATTTCT GCAAT AACC GTTGC TTTTTTTTGAATTGC TERM 900 815953 - 815943 - R 71 -5.4 -4.61566 | TTCTAAATTACAAAA GCTA ATT TAGC GAACAAAAGAACCGT VFMJ11_A0758 816914 - 816450 - | acetyltransferase TERM 901 817907 - 817893 - g 78 -2.8 -5.44119 | overlap 817895 GCTATTGCAAAAAAA TACCCT CAC AGAGCA AAAAGTTATGGTTGG TERM 902 818165 - 818136 - g 84 -12.3 -3.04032 | opp_overlap 818135 818136, overlap 818133 ACAATACAAGAATTA TTGGGTCATTCTG ATAT CAAAACGACCCAA ATTTATACTCACGTA VFMJ11_A0759 817245 - 818228 + | site-specific recombinase IntIA VFMJ11_A0760 818408 - 818235 - | hypothetical protein VFMJ11_A0761 819235 - 818411 - | hypothetical cytosolic protein VFMJ11_A0762 819683 - 819258 - | esterase YdiI VFMJ11_A0763 819828 - 820532 + | hypothetical protein TERM 903 820611 - 820590 - T 90 -8 -5.03994 | opp_overlap 820582 820590 TCTTAGATACAAAAA TGCCAGCA TTTATT CGCTGGCA TTTTTTATGGATTCA TERM 904 820590 - 820611 + T 89 -7.3 -5.31456 | opp_overlap 820590, overlap 820582 TCTTAGATACAAAAA TGCCAGC ATTTATTC GCTGGCA TTTTTTATGGATTCA VFMJ11_A0764 820835 - 820635 - | hypothetical protein TERM 905 820896 - 820860 - R 73 -4.4 -4.91712 | overlap 820863 820866 CTCAATTCATAAAAA CAATTAGAGGGATTCT ACAAG AGAACCCCTCAAAAGG TAAACCTAAAGCCGT TERM 906 820893 - 820863 - R 93 -9.1 -4.55383 | overlap 820860 820866 AATTCATAAAAACAA TTAGAGGGATTCT ACAAG AGAACCCCTCAAA AGGTAAACCTAAAGC TERM 907 820890 - 820866 - R 86 -10.8 -3.21005 | overlap 820863 820860 TCATAAAAACAATTA GAGGGATTCT ACAAG AGAACCCCTC AAAAGGTAAACCTAA VFMJ11_A0765 822828 - 820915 - | methyl-accepting chemotaxis protein VFMJ11_A0766 823021 - 823977 + | MoxR protein TERM 908 824478 - 824514 + G 71 -6 -4.1552 | gap 1 TAAATCGACGCTCGA TTGTAAGCCCTC-TTCT CGCC AGAAAGTGGTCTTACAA TTTCTTCAAAAGATC VFMJ11_A0767 824026 - 824985 + | hypothetical cytosolic protein TERM 909 825186 - 825168 - g 85 -3 -5.71712 | opp_overlap 825168 GCTTACAGAAAAAAA CGACGCCT TCA ACGGGTCG CTTTATCTGAATTAG TERM 910 825399 - 825409 + G 71 -6.8 -4.03234 | opp_overlap 825391 GAGAAAGCCTTGTAC GGCA AAG TGCC TTTATCTGAAACCAA VFMJ11_A0768 824985 - 825518 + | hypothetical protein TERM 911 826240 - 826229 - g 73 -5.8 -4.64861 | opp_overlap 826225, overlap 826225 TCTTTGGAAAACAAA CGGT AAAT ACCG CTCGTGATCTGGATG VFMJ11_A0769 825511 - 826476 + | von Willebrand factor, type A VFMJ11_A0770 826469 - 828340 + | transporter TERM 912 829996 - 829979 - g 78 -4.1 -5.25735 | GTAAAAAATCAAAAA CAAGCCC AACT GAACTTG AAGCATTATAGGCTT VFMJ11_A0771 828346 - 830007 + | hypothetical protein TERM 913 830033 - 830051 + F 93 -8.1 -5.4251 | opp_overlap 830033 CATAAATGAATTTAA GGCTGGC TATGT GTCAGCC TTTTTTATGTCTCAC TERM 914 831313 - 831291 - g 70 -7.8 -3.78329 | GTTGACCAAGGTAAA TTAGAAGCAA TGA TTGCTGCTAA GCTATAAAACTAGGA tal 830370 - 831320 + | transaldolase TERM 915 831333 - 831323 - f 71 -5.4 -4.4715 | overlap 831330 TGCTAAGCTATAAAA CTAG GAA CTAG GAGCTAGAACGCTTC TERM 916 831452 - 831471 + F 77 -8.6 -3.68767 | opp_overlap 831451 CACCATATTCAAATC GGGTTGAA CTTC TTCAGCCC TTCATTTTCAAATAT TERM 917 831803 - 831787 - g 89 -10.1 -4.14511 | opp_overlap 831787 AACTTCACTCTAAAA CTCCGGG TCA CCCAGAG TATGGTTACGCACCT tkt_2 831501 - 833492 + | transketolase TERM 918 833568 - 833520 - T 93 -14.1 -2.71244 | opp_overlap 833534, overlap 833529 833534 TTATAAACAGAACAC CTTAATAAACAAAAGCCTCGCTA ATT CAGCGAGGCTTTTTTATATTGAG AAATAGTTTTGAATT TERM 919 833559 - 833529 - T 100 -13.4 -4.20749 | opp_overlap 833534, overlap 833520 833534 GAACACCTTAATAAA CAAAAGCCTCGCTA ATT CAGCGAGGCTTTTT TATATTGAGAAATAG TERM 920 833534 - 833554 + T 100 -12.6 -5.47159 | opp_overlap 833529 833520 833534 CCTTAATAAACAAAA GCCTCGCT AATTC AGCGAGGC TTTTTTATATTGAGA TERM 921 833554 - 833534 - T 100 -13.3 -5.09762 | opp_overlap 833534, overlap 833529 833520 CCTTAATAAACAAAA GCCTCGCTA ATT CAGCGAGGC TTTTTTATATTGAGA VFMJ11_A0774 834542 - 833595 - | lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) TERM 922 834565 - 834548 - R 74 -6.3 -4.2828 | overlap 834556 TTTCACCCATCAAAA CTAAGAC ACCT GTCTCAG AAATATAATTAAAGT VFMJ11_A0775 835533 - 834751 - | hypothetical protein VFMJ11_A0776 835783 - 836643 + | outer membrane receptor protein VFMJ11_A0777 836676 - 840767 + | lipoprotein, putative TERM 923 840780 - 840807 + T 75 -8.5 -3.38339 | opp_overlap 840785, overlap 840785 TAACCTCCCCCAATA AAAAAGCCAGC ATAACC GCTGGCTTTTC TTCATATTAAATACT TERM 924 840802 - 840785 - T 100 -9.1 -5.4505 | opp_overlap 840785 840780 TCCCCCAATAAAAAA GCCAGCA TAAC CGCTGGC TTTTCTTCATATTAA TERM 925 840785 - 840802 + T 86 -8.4 -4.78753 | opp_overlap 840785, overlap 840780 TCCCCCAATAAAAAA GCCAGC ATAACC GCTGGC TTTTCTTCATATTAA VFMJ11_A0778 841485 - 840829 - | major NAD(p)h-flavin oxidoreductase VFMJ11_A0779 843007 - 841574 - | ggdef domain protein VFMJ11_A0780 843209 - 843406 + | hypothetical protein TERM 926 843424 - 843456 + F 73 -3.6 -5.1287 | gap 1, opp_overlap 843429, overlap 843427 843429 AACTTTCACCCCTAA TAGAATGAGCCTATT GTCT GATAGGTTCAT-CTG TTTTTTAAATCTCAC VFMJ11_A0781 843697 - 844308 + | sialate-O-acetyltranferase TERM 927 844332 - 844350 + T 78 -10.2 -2.69288 | opp_overlap 844332, overlap 844329 TACGTACACAAAAAA GGGCCGCA AAC TGCGACCC TAACTTATTCGTTAT TERM 928 844350 - 844332 - T 100 -12.4 -5.38047 | opp_overlap 844329 844332 TACGTACACAAAAAA GGGCCGCA AAC TGCGACCC TAACTTATTCGTTAT TERM 929 844387 - 844376 - T 73 -4.4 -4.85599 | opp_overlap 844376 844378, overlap 844378 GTTATTTCAGAAAAA GTGA GTTA TCAC TCTTTACCGAAAACA guaC 845427 - 844384 - | guanosine monophosphate reductase TERM 930 845521 - 845544 + H 100 -13.8 -4.30441 | opp_overlap 845521 GCAGGCACAAAAAAA CCGGGGCGCT GGCA GGCGCTCCGG TTTTCAGTATTATAG TERM 931 845544 - 845521 - H 100 -10.9 -5.64274 | opp_overlap 845521 GCAGGCACAAAAAAA CCGGGGCGC TGGCAG GCGCTCCGG TTTTCAGTATTATAG TERM 932 846953 - 846975 + G 85 -9.2 -4.22375 | AAAAATACGAATGGT GCTGGTGATG CTG CATTATCAGC TTTATTGCATGATAT VFMJ11_A0783 845888 - 847192 + | inosine-guanosine kinase TERM 933 847213 - 847250 + T 100 -15.2 -2.88861 | opp_overlap 847222, overlap 847222 TTAGTATGGTTTATT TATAAAAAATCCGACG GTTAAA CGTCGGATTTTTTGTA TATATAGCCCTAATA TERM 934 847241 - 847222 - T 100 -9.3 -5.28176 | opp_overlap 847213 847222 TTTATTTATAAAAAA TCCGACG GTTAAA CGTCGGA TTTTTTGTATATATA TERM 935 847222 - 847241 + T 100 -9.3 -5.4492 | opp_overlap 847222, overlap 847213 TTTATTTATAAAAAA TCCGACG GTTAAA CGTCGGA TTTTTTGTATATATA VFMJ11_A0784 847548 - 847270 - | peptidyl-prolyl cis-trans isomerase C VFMJ11_A0785 847688 - 848584 + | chemotaxis protein CheV TERM 936 848659 - 848610 - T 86 -12.5 -2.70023 | opp_overlap 848623, overlap 848623 TACAAACATAACTTA CACATACAAAAAACCGCATTACC TTAG GATAATGCGGTTTTTTATATTTT TGTTTATTACTTAAA TERM 937 848646 - 848623 - T 100 -11.8 -5.4492 | opp_overlap 848623, overlap 848610 TACACATACAAAAAA CCGCATTACC TTAG GATAATGCGG TTTTTTATATTTTTG TERM 938 848623 - 848646 + T 100 -10.4 -5.69068 | gap 1, opp_overlap 848623 848610 TACACATACAAAAAA CCGCATTA-CC TTA GGATAATGCGG TTTTTTATATTTTTG VFMJ11_A0786 849367 - 848684 - | nodulation protein N TERM 939 849422 - 849443 + r 74 -2.3 -5.42862 | gap 1 TTAATAGCCAGATTG CGTAATTGTG TTA CACA-TCACG TTTTTTTGCAAATCT TERM 940 849755 - 849720 - R 88 -7.9 -4.93177 | gap 1, opp_overlap 849727 849751, overlap 849727 CAAAAATCAATAAAA TA-AAAAACCTCTGCA GTAAA TACAGAGGTTTTTCTA GTAACTCGAACTTAT TERM 941 849727 - 849747 + r 77 -5.4 -4.9218 | opp_overlap 849720 849727 CAATAAAATAAAAAA CCTCTGCA GTAAA TACAGAGG TTTTTCTAGTAACTC TERM 942 849747 - 849727 - R 100 -7.6 -5.92399 | opp_overlap 849727, overlap 849720 CAATAAAATAAAAAA CCTCTGCA GTAAA TACAGAGG TTTTTCTAGTAACTC gcvT 850929 - 849811 - | glycine cleavage system T protein TERM 943 850797 - 850812 + g 82 -4 -5.40072 | AACCAGCAGCATTAC GAGTAT GAAG ATGCTC TTTTTTTACACCAAG VFMJ11_A0788 851654 - 850998 - | transcriptional regulator TERM 944 851179 - 851160 - G 75 -2.8 -5.23396 | overlap 851161 AAGAACTAATAAAAA CTCTTCAC CATC GTGACGAA CCCATTCTGCATATG TERM 945 851775 - 851752 - H 72 -6.1 -4.45175 | opp_overlap 851748 851752 851756, overlap 851748 851747 851756 TAGCAAAAAAGGAAA CAAAGTTTC TTATTG GAAACTTCG TCGTTGAATGTTGCA gcvH 851922 - 852302 + | glycine cleavage system H protein gcvP 852326 - 855193 + | glycine dehydrogenase TERM 946 855233 - 855251 + T 85 -8.9 -4.208 | opp_overlap 855233 AGATTCTATGAAAAA GCGAACT TATTT AGTTCGC TTTCTACTTTTCAGA TERM 947 855251 - 855233 - T 93 -8.9 -4.74132 | opp_overlap 855233 AGATTCTATGAAAAA GCGAACT TATTT AGTTCGC TTTCTACTTTTCAGA VFMJ11_A0791 856213 - 855302 - | hypothetical protein TERM 948 855493 - 855512 + g 71 -9.4 -2.76098 | opp_overlap 855497, overlap 855492 855497 TATCGCTAGCCATCC CAAAGTCA GTTA TGACTTTG CTCTTGTTCTTCTCT TERM 949 860476 - 860488 + G 70 -7.7 -3.74526 | opp_overlap 860472 TTTACTCAAATGGTA CCTCA CCC TGAGG TTATTCCATTGCTCA VFMJ11_A0792 856390 - 861015 + | hypothetical protein TERM 950 862817 - 862799 - g 78 -7.5 -4.32436 | opp_overlap 862790, overlap 862790 ATATGATCATCAAAA TGATGTG CTACT CACATCA TACACAAGCGGTAGA VFMJ11_A0793 861087 - 863306 + | hypothetical protein TERM 951 863415 - 863436 + F 93 -8.1 -5.71712 | opp_overlap 863404 863415 CCCATCTATATAAAA TAGACAAGC GTAT GTTTGTCTA TTTTTTTATCTAAAA TERM 952 863436 - 863415 - f 74 -5.9 -4.55287 | opp_overlap 863415, overlap 863404 CCCATCTATATAAAA TAGACAAGC GTAT GTTTGTCTA TTTTTTTATCTAAAA VFMJ11_A0794 863739 - 865829 + | diguanylate cyclase/phosphodiesterase domain 2 TERM 953 865914 - 865896 - T 82 -7.5 -4.51743 | opp_overlap 865896 CGATTATTAAATAAA GGACTAT TCCAC ATAGTCC TTTTTACTACCACAT TERM 954 865896 - 865914 + T 83 -7.5 -4.7254 | opp_overlap 865896 CGATTATTAAATAAA GGACTAT TCCAC ATAGTCC TTTTTACTACCACAT VFMJ11_A0795 866793 - 865921 - | transporter, drug/metabolite exporter family TERM 955 866605 - 866591 - G 76 -2.1 -5.37865 | CCAATAATGAAAAAA TACGA ATAAG CCGTA AAGCTTGGTAAATTA TERM 956 866708 - 866683 - G 88 -8.3 -4.82901 | gap 1, opp_overlap 866684, overlap 866684 TCCCGCCCATAAAAA TCGTGACA-GCG TCA CGCCTGTCACGT TCAATTCTTTACTTA TERM 957 866707 - 866684 - G 89 -11.8 -3.49419 | gap 1, opp_overlap 866684, overlap 866683 CCCGCCCATAAAAAT CGTGACA-GCG TCA CGCCTGTCACG TTCAATTCTTTACTT TERM 958 866684 - 866707 + g 86 -11.8 -3.35183 | gap 1, opp_overlap 866684 866683 CCCGCCCATAAAAAT CGTGACA-GCG TCA CGCCTGTCACG TTCAATTCTTTACTT TERM 959 866764 - 866737 - G 72 -8.4 -3.58269 | TAATCGACTTTGAAA CGCATTCCGCCA TGAT TGGCTAAACGCG GCAAGTAGCGTAAAT VFMJ11_A0796 867732 - 866875 - | transcriptional regulator, AraC family TERM 960 867128 - 867116 - G 74 -6.3 -4.39166 | opp_overlap 867116 GGTGAGATATTAAAA CGATT CGC AATCG TGGTTCTATCTATGC VFMJ11_A0797 867875 - 867723 - | hypothetical protein TERM 961 867845 - 867857 + g 87 -3.5 -5.75822 | AATCATGTAACTCTT TATTT ATT AAATA TTTTTTTGATTTGTA VFMJ11_A0798 868033 - 869934 + | pts system, mannose-specific iiab component TERM 962 869942 - 869980 + F 100 -13.4 -4.2408 | CTGCTTAATTGCTCT GACACTATTGACGACA ATCCCCC TGTCGTTGATAGTGTC TTTCTAGTTTTATGA manA 870006 - 871202 + | mannose-6-phosphate isomerase, class I TERM 963 871281 - 871309 + T 100 -13.9 -5.24129 | opp_overlap 871280 871281 AGGGTCTAGCAGAAT GCTGGCTTGGCGG TTG TCGTTAAGCCAGC TTTTTTATGCCCGCA VFMJ11_A0800 872126 - 871341 - | PTS system, IIA component VFMJ11_A0801 872425 - 872126 - | pts system, fructose specific iibc component VFMJ11_A0802 872630 - 874525 + | pts system, fructose-specific iiabc component TERM 964 874534 - 874561 + T 77 -9.3 -3.17194 | opp_overlap 874530 GGCGTAAACTAGTCA GGGTTGATTGT AATATC ATAATCAACCC TTACCTTAAAACCGT VFMJ11_A0803 876883 - 874592 - | serine protease TERM 965 877171 - 877161 - g 73 -6.8 -4.28111 | TAGAGGATTAACAAA TGGC TAA GCCA ATCCAACTGGGTTTT VFMJ11_A0804 877160 - 877762 + | lipoprotein, putative VFMJ11_A0805 877772 - 879226 + | type VI secretion system FHA domain protein VFMJ11_A0806 879228 - 879728 + | type VI secretion lipoprotein, family VFMJ11_A0807 879740 - 881065 + | type VI secretion protein, family VFMJ11_A0808 881062 - 881853 + | type IV / VI secretion system protein, DotU family VFMJ11_A0809 881894 - 883405 + | hypothetical protein TERM 966 883884 - 883902 + G 80 -4.6 -5.27399 | AACTTCTGGTTATCA TAAAGTAG TAG CTTCTTTA TTTTTTACTGTATTG VFMJ11_A0810 883408 - 884181 + | hypothetical protein VFMJ11_A0811 884191 - 884826 + | hypothetical protein VFMJ11_A0812 884836 - 885327 + | hypothetical protein TERM 967 885383 - 885365 - g 86 -10.3 -4.06384 | opp_overlap 885365 TTTGAACACTATAAA CACCAGC TCTCT GCTGGTG TTTTTTCATCAGCCC TERM 968 885365 - 885383 + G 93 -10.3 -5.14563 | opp_overlap 885365 TTTGAACACTATAAA CACCAGC TCTCT GCTGGTG TTTTTTCATCAGCCC VFMJ11_A0813 885351 - 885962 + | hypothetical protein TERM 969 886002 - 886028 + T 100 -9.5 -5.12068 | opp_overlap 886002 CATGTATAAAAAAAA CGCCAGTAAAT TATTT ATTCACTGGCG TTTTTATTACGTCTA TERM 970 886028 - 886002 - T 100 -11.7 -5.96219 | opp_overlap 886002 CATGTATAAAAAAAA CGCCAGTAAAT TATTT ATTCACTGGCG TTTTTATTACGTCTA VFMJ11_A0814 896644 - 886052 - | lipoprotein, putative TERM 971 893970 - 893986 + g 78 -3 -5.37171 | ATCTTATTTACTTTA GCTAGA ATTTC TTTAGC TTTTTCTTTGCTCTT TERM 972 896769 - 896734 - H 85 -8.6 -4.19123 | opp_overlap 896736 896746, overlap 896743 CATAAACCATATAAA TAGTAAAAATAACTAT AAAG ATAGTCATTTTAACTA TTGCACGTTCATTAA VFMJ11_A0815 896890 - 897819 + | M23 peptidase domain protein TERM 973 898542 - 898505 - g 76 -9.3 -3.79021 | gap 1, opp_overlap 898502 898508, overlap 898508 ACATTAAAGATAGAA GAAGAGCTT-CGTTCTCA CTA TGGGAACAAAAGCCCTTC TCTCGGAGCTATTCG TERM 974 899011 - 898997 - g 87 -8.6 -4.65916 | GTTACCTCAACAAAA GTCGAT AAA ATCGAC GAACTAGAAACATTG TERM 975 899092 - 899106 + G 79 -8.6 -4.11692 | opp_overlap 899087 899092 AGAATATGAATTCAA TCAGCA ACG TGCTGA TTTTGAAAATGAATA VFMJ11_A0816 898055 - 899359 + | ImpA-related N-terminal family protein icmF_2 899394 - 902792 + | type VI secretion protein IcmF VFMJ11_A0818 902828 - 903277 + | transcriptional regulator TERM 976 903347 - 903298 - T 87 -13.1 -2.76263 | opp_overlap 903298 903309, overlap 903295 903308 TTCACTATTTAACCA GGTGTAGGAAGCGATGAATAAGC GCCA ACTTATTAATCGTTTTCTACACC TTTAGTTACTGCCTA TERM 977 903298 - 903347 + T 100 -16.8 -3.96298 | opp_overlap 903295 903298 903308, overlap 903309 TTCACTATTTAACCA GGTGTAGGAAGCGATGAATAAG CGCCAA CTTATTAATCGTTTTCTACACC TTTAGTTACTGCCTA VFMJ11_A0819 904347 - 903349 - | type VI secretion protein, family vasA_2 906092 - 904344 - | type VI secretion protein, family TERM 978 904900 - 904922 + g 74 -9.2 -3.58208 | opp_overlap 904898 904896 904900, overlap 904896 904903 AACTTCATCAATACA GTTTCTGAAC CAA GTTCAGATAC TTGATTGTTATGCGA TERM 979 904922 - 904900 - G 70 -9.2 -3.13639 | opp_overlap 904900 904896 904903, overlap 904898 904896 AACTTCATCAATACA GTTTCTGAAC CAA GTTCAGATAC TTGATTGTTATGCGA TERM 980 904903 - 904919 + g 71 -9.5 -2.91042 | opp_overlap 904900 904898 904896, overlap 904900 904896 TTCATCAATACAGTT TCTGAAC CAA GTTCAGA TACTTGATTGTTATG VFMJ11_A0821 906515 - 906105 - | type VI secretion system lysozyme-related protein TERM 981 906559 - 906534 - R 100 -14.9 -5.40072 | opp_overlap 906537 TTCTTCTTAAAAAAA TAAGCGATCAG AAAT CTGATCGCTTA TAAATGCACAGCAAA TERM 982 906537 - 906556 + r 90 -12.2 -3.35679 | opp_overlap 906534 TTCTTAAAAAAATAA GCGATCAG AAAT CTGATCGC TTATAAATGCACAGC VFMJ11_A0822 908053 - 906575 - | type VI secretion protein, EvpB/family TERM 983 907057 - 907092 + g 79 -9.2 -3.9279 | opp_overlap 907063 907064 907067, overlap 907058 CGTATTCACGACGGT CTGAAATTAAGATCTC TGTT GGGATCTTAGTTTCAA TTTGTCCCATTGACT TERM 984 907058 - 907091 + g 84 -12.7 -2.95192 | opp_overlap 907063 907064 907067, overlap 907057 GTATTCACGACGGTC TGAAATTAAGATCTC TGTT GGGATCTTAGTTTCA ATTTGTCCCATTGAC VFMJ11_A0823 908571 - 908062 - | type VI secretion protein, family VFMJ11_A0824 910189 - 908630 - | type VI secretion-associated protein, family TERM 985 908901 - 908933 + g 74 -6.3 -4.44461 | opp_overlap 908900, overlap 908905 GGATCACTAGCCAAG TTTTGGGCAATACGT GAT ACGTACTCCCCTAAA TTTTCTAACGTTATT VFMJ11_A0825 912176 - 910191 - | serine-threonine protein kinase VFMJ11_A0826 913271 - 912330 - | hypothetical protein TERM 986 912410 - 912388 - G 83 -3.4 -5.68438 | opp_overlap 912389, overlap 912389 TGATCAAATAAAAAA GCAGTAGATA ATA CACCTACTGT GCTTAAATGATTCAT TERM 987 912409 - 912389 - G 71 -6.9 -3.99436 | opp_overlap 912389, overlap 912388 GATCAAATAAAAAAG CAGTAGATA ATA CACCTACTG TGCTTAAATGATTCA VFMJ11_A0827 914248 - 913271 - | hypothetical protein VFMJ11_A0828 915554 - 914229 - | hypothetical protein TERM 988 915479 - 915494 + g 73 -7.6 -4.0827 | opp_overlap 915481, overlap 915453 GCGCTAATGCGATAT CAGCAA TTGC TTGCTG TTTATCTGCATCTGT VFMJ11_A0829 916057 - 915563 - | hypothetical protein TERM 989 916008 - 915985 - G 86 -11.8 -3.37533 | opp_overlap 915984 915983 915985 TCCCAAAACGAGGAA CGCAAGCTAA TGAT TCAGCTTGCG AATTTTCGTCTATGG TERM 990 915985 - 916008 + g 70 -9.6 -2.53329 | opp_overlap 915985, overlap 915984 915983 TCCCAAAACGAGGAA CGCAAGCTAA TGAT TCAGCTTGCG AATTTTCGTCTATGG VFMJ11_A0830 918122 - 916044 - | Rhs element Vgr family protein TERM 991 917837 - 917826 - G 73 -5.8 -4.56775 | ACGTTGCGTTAAAAA CCAC AACT GTGG TACTAACGTAATTTG TERM 992 918170 - 918153 - R 75 -8.4 -3.741 | opp_overlap 918152 918153, overlap 918151 CTAATATGCAAAATA GGGCCA ACAATG TGGCCC CTTGTATTAATTACG VFMJ11_A0831 918710 - 918192 - | BfdA TERM 993 918856 - 918843 - H 76 -3.9 -5.2166 | overlap 918849 CAACAACTTAAAAAA GTAAA GGTA TTTAC ATACAATTTATTGAA TERM 994 918982 - 918972 - H 86 -5.4 -5.72254 | opp_overlap 918972, overlap 918979 TCAAATAAGAAAAAA GTCA TAA TGAC ATGTATTTTAGTTAT TERM 995 920013 - 919992 - g 72 -4.5 -4.66833 | gap 1 GGTGAATTTGAAAAA CGCCTAA-AC GCT GTGTTAGACG AAGTTAAGAATTCTC clpV_2 919176 - 921842 + | type VI secretion ATPase, ClpV1 family TERM 996 921905 - 921925 + G 86 -10.5 -4.07885 | opp_overlap 921861 921862 921904 921907 CTGATCGCAGCCAAT TAGCGTTGA CAC TCGACGCTA TTTTGGCCGCAGCTC VFMJ11_A0833 921829 - 923439 + | nitric oxide reductase regulator VFMJ11_A0834 923440 - 923940 + | lipoprotein, putative TERM 997 923968 - 924002 + T 86 -10.3 -3.54408 | gap 1, opp_overlap 923971 923978, overlap 923971 923978 GCTTGCTTTTTTAGG TAATAAAAAA-CCGCC CGAT GGCGGTTTTTTTATTG TTAATTTAAATACAA TERM 998 923971 - 923999 + T 87 -9.8 -3.90425 | gap 1, opp_overlap 923971 923978, overlap 923968 923978 TGCTTTTTTAGGTAA TAAAAAA-CCGCC CGAT GGCGGTTTTTTTA TTGTTAATTTAAATA TERM 999 923998 - 923971 - T 84 -11.4 -3.05384 | opp_overlap 923971 923968 923978, overlap 923978 TGCTTTTTTAGGTAA TAAAAAACCGCC CGAT GGCGGTTTTTTT ATTGTTAATTTAAAT TERM 1000 923978 - 923991 + T 100 -9.5 -5.95946 | opp_overlap 923978 923971, overlap 923971 923968 TTAGGTAATAAAAAA CCGCC CGAT GGCGG TTTTTTTATTGTTAA TERM 1001 923991 - 923978 - T 100 -9.5 -5.4833 | opp_overlap 923971 923968 923978, overlap 923971 TTAGGTAATAAAAAA CCGCC CGAT GGCGG TTTTTTTATTGTTAA VFMJ11_A0835 928830 - 924028 - | OmpA family protein VFMJ11_A0836 930034 - 928820 - | lipoprotein, putative VFMJ11_A0837 931826 - 930138 - | hypothetical protein TERM 1002 932201 - 932187 - H 76 -2.8 -5.44638 | ATAACAAAAACAAAA CAAATG ATT CATATG AAAAATTGATGGAAG TERM 1003 932621 - 932594 - H 77 -10 -3.02043 | opp_overlap 932597, overlap 932597 AACCTTTTCGTAACA GAATGAACCCTT GTTA AACGGTTCATTC AATCATAGGCAAGGA TERM 1004 932757 - 932743 - g 72 -3.6 -5.08483 | opp_overlap 932746 932750, overlap 932746 932748 TAAAATTAAATAAAA TAACAG CCG CTATTA CTAGCGTCATGTTTA VFMJ11_A0838 932724 - 936083 + | chitodextrinase TERM 1005 936135 - 936160 + F 100 -10.5 -5.67063 | opp_overlap 936135 CAGTTAAATGAATAA GAACCCTGCTT TTCG AAGTGGGGTTC TTTTTTTGTAATAAA VFMJ11_A0840 936221 - 936367 + | hypothetical protein VFMJ11_A0841 941363 - 936591 - | OmpA family protein TERM 1006 936655 - 936665 + g 79 -6.8 -4.50988 | ATCCATTTTTTTATT CGCA GTA TGCG TTGTTTTTCATCTAA TERM 1007 940672 - 940658 - G 77 -5 -5.00616 | opp_overlap 940658 TTTTGTGTGAAAAAA CAACAC TAC ATGTTG CTTGTGATGGTAACA VFMJ11_A0842 942577 - 941363 - | hypothetical protein VFMJ11_A0843 944309 - 942585 - | hypothetical protein TERM 1008 944531 - 944514 - R 88 -6.2 -5.64421 | opp_overlap 944514 ATGCGAAACAAAAAA CGGCCC AATTAA GGACCG TTTCATTGCTGTCAT VFMJ11_A0844 946102 - 944561 - | C4-dicarboxylate anaerobic carrier superfamily protein VFMJ11_A0845 946435 - 946905 + | hypothetical protein VFMJ11_A0846 947814 - 946906 - | transcriptional regulator, LysR family VFMJ11_A0847 947928 - 948968 + | choloylglycine hydrolase family TERM 1009 949009 - 949031 + T 100 -9.2 -5.60556 | opp_overlap 949009 AATACTAAGACCAAA GCCGAATG TATTTAC CATTCGGC TTTTTATTTTATCTT TERM 1010 949031 - 949009 - T 85 -9.2 -3.96696 | opp_overlap 949009 AATACTAAGACCAAA GCCGAATG TATTTAC CATTCGGC TTTTTATTTTATCTT VFMJ11_A0848 950022 - 949045 - | putative oxidoreductase YgjR VFMJ11_A0849 950400 - 950053 - | HopJ type III effector protein TERM 1011 950470 - 950448 - R 100 -11.4 -5.80817 | opp_overlap 950448 TCCAATACAAAAAAA CCTAGATAGA CGT TCTACCTAGG TTTCAATTATTTCGC TERM 1012 950448 - 950470 + r 81 -9.2 -3.89435 | opp_overlap 950448 TCCAATACAAAAAAA CCTAGATAGA CGT TCTACCTAGG TTTCAATTATTTCGC VFMJ11_A0850 950755 - 950477 - | acetyltransferase VFMJ11_A0851 951974 - 950796 - | transporter, MFS superfamily VFMJ11_A0852 952931 - 952059 - | transcriptional regulator, LysR family TERM 1013 953603 - 953590 - g 70 -8.1 -3.74158 | opp_overlap 953589 CCAACCAGATTTAAA CTGGG AGAA CCCAG CTGTTCACCAAAAAG VFMJ11_A0853 953075 - 954706 + | oligo-1,6-glucosidase TERM 1014 954729 - 954763 + T 87 -6.6 -5.42514 | gap 1 TTTTGAACTGCCTAC TAGCGCCCTATTACT TTCATT GGTA-TAGGGCGTTA TTTTTTGCTTTATCA VFMJ11_A0854 955579 - 954776 - | transcriptional regulator TERM 1015 955381 - 955398 + g 70 -2.7 -5.03994 | TTGCTGCCAATGCCA TGCCA TCTAATTC TGGCA TTTTTATATCTAAAA VFMJ11_A0855 956628 - 955576 - | two component sensor histidine kinase VFMJ11_A0856 957884 - 956628 - | hypothetical protein VFMJ11_A0857 958684 - 957887 - | hypothetical protein TERM 1016 958464 - 958487 + g 82 -6 -5.00642 | GTGTATACCGTGTAT TGGCGAGTTT TATC GAGCTCGTCA TTTTTGTATAGCTTA VFMJ11_A0858 959945 - 958677 - | ABC transporter permease protein VFMJ11_A0859 960619 - 959933 - | lipoprotein-releasing system ATP-binding protein LolD VFMJ11_A0860 961267 - 960626 - | hypothetical protein TERM 1017 961347 - 961334 - H 91 -2.3 -6.23317 | ACAAAAACAAAAAAA CGTTG AATG CGACG AACGGTAAATAGAGA VFMJ11_A0861 961453 - 961947 + | acetyltransferase, gnat family TERM 1018 961985 - 962020 + T 78 -10.6 -2.74488 | gap 1, opp_overlap 962016, overlap 962016 AAACTTAATTAAACG TGGCGGTCTGTTTCTGA ATA TTAGGAGCA-ACCGCCA TACTTAGCGTAATTG VFMJ11_A0862 962293 - 962024 - | zinc finger protein TERM 1019 962444 - 962424 - R 71 -3.2 -5.14563 | opp_overlap 962424 GGGGGTATTAAAAAA GCCGAAAA ATTAA CTTACGGC TTTCATTCATAGCTA VFMJ11_A0863 963481 - 962477 - | glycosyl transferase family, helical bundle domain protein TERM 1020 963580 - 963545 - R 100 -7 -6.04953 | ACATAAACAAAAAAA GCCAAGAAATTCATAA TAAT CTACAAACCTCTTGGC TATTTTCTTAATCAT VFMJ11_A0864 964629 - 963604 - | permease, major facilitator superfamily VFMJ11_A0865 965709 - 964642 - | multidrug resistance protein A TERM 1021 965135 - 965147 + g 73 -7.7 -3.95883 | overlap 965134 TCTAAATCTAACTCT GCTTG TTT CAAGC TATTTTTCGCTGATA TERM 1022 965857 - 965869 + G 70 -2.7 -5.01535 | overlap 965851 TCTTTGCCTTCATTT GATGA TAT TTATC TTTTTGTCCTTGTAG VFMJ11_A0866 965824 - 966711 + | transcriptional regulator, LysR family TERM 1023 966976 - 967014 + T 100 -12 -4.8622 | opp_overlap 966977 966979 966983, overlap 966979 966983 CCAAGTGAGCCCTAA ATATAAAGCCAATATCAT CAA ATGATATTGGCTTTATTC TTTTTACTTAAACAG TERM 1024 967013 - 966977 - T 100 -15.5 -3.58269 | opp_overlap 966976 966979 966983, overlap 966979 966983 CAAGTGAGCCCTAAA TATAAAGCCAATATCAT CAA ATGATATTGGCTTTATT CTTTTTACTTAAACA TERM 1025 966979 - 967011 + T 100 -18.1 -4.53777 | opp_overlap 966979 966977 966983, overlap 966976 966983 AGTGAGCCCTAAATA TAAAGCCAATATCAT CAA ATGATATTGGCTTTA TTCTTTTTACTTAAA TERM 1026 967011 - 966979 - T 100 -18.1 -3.36694 | opp_overlap 966976 966979 966983, overlap 966977 966983 AGTGAGCCCTAAATA TAAAGCCAATATCAT CAA ATGATATTGGCTTTA TTCTTTTTACTTAAA TERM 1027 966983 - 967007 + T 100 -14.5 -4.78157 | opp_overlap 966979 966977 966983, overlap 966979 966976 AGCCCTAAATATAAA GCCAATATCAT CAA ATGATATTGGC TTTATTCTTTTTACT TERM 1028 967007 - 966983 - T 100 -14.5 -4.33258 | opp_overlap 966983 966979 966976, overlap 966979 966977 AGCCCTAAATATAAA GCCAATATCAT CAA ATGATATTGGC TTTATTCTTTTTACT bioD 967722 - 967042 - | dethiobiotin synthase bioC 968536 - 967715 - | biotin biosynthesis protein BioC TERM 1029 967958 - 967971 + g 79 -6.7 -4.62783 | GTTGTTGCATTCAGA TTGCG CTAA CGCAA TTTTTACCATAGATG TERM 1030 968298 - 968308 + g 71 -6.8 -4.08692 | opp_overlap 968289 TCAAACGCTACGACG CGTG CTC CACG TTTTAACAAGGCTTC bioF 969694 - 968543 - | 8-amino-7-oxononanoate synthase bioB 970730 - 969678 - | biotin synthase TERM 1031 970568 - 970582 + g 70 -5.7 -4.41494 | AATACTTACAGTCTT CAGGA CAGGC TCCTG TTTTAATTGAAAGTA bioA 970859 - 972139 + | adenosylmethionine-8-amino-7-oxononanoate transaminase TERM 1032 972177 - 972151 - T 100 -12.4 -5.95946 | opp_overlap 972151 CTAATAATAAAAAAA CCGATGCCTTTA CAA TAAAGGTATCGG TTTTTAAACGCTCAA TERM 1033 972151 - 972177 + T 100 -14.6 -4.58395 | opp_overlap 972151 CTAATAATAAAAAAA CCGATGCCTTTA CAA TAAAGGTATCGG TTTTTAAACGCTCAA VFMJ11_A0872 972423 - 972214 - | hypothetical protein VFMJ11_A0873 973124 - 972567 - | ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N- of ribosomal protein S5) VFMJ11_A0874 974683 - 973136 - | transcriptional regulatory protein TyrR TERM 1034 973978 - 974020 + g 90 -8.7 -5.15969 | gap 1 TCTCTTTACCCGTTC CTGTCTCACCTTGGATCAAT AATG ATTGATC-AATGTCAGACAG TTTTTTAGCTTGAGA TERM 1035 974306 - 974331 + g 76 -6.9 -4.44974 | opp_overlap 974306 GTCTGGTAATAAAAC CGTTGCTGATT GACC AATAAGCGACG TTTTATCCAATTTAA TERM 1036 975017 - 975004 - g 71 -6.7 -4.09215 | opp_overlap 975003 CAGATTAATGACAAA CGATG AACG CATCG CCTTAGTTGATTCTA VFMJ11_A0875 974822 - 975766 + | hypothetical protein TERM 1037 975830 - 975853 + G 79 -11 -3.17875 | opp_overlap 975830, overlap 975828 975827 TAACCCAGCATTACA GGCTGCTGTT GAGA ATCAGCAGCC TACTTTTGCTCTATT TERM 1038 975853 - 975830 - g 77 -11 -2.83641 | opp_overlap 975830 975828 975827 TAACCCAGCATTACA GGCTGCTGTT GAGA ATCAGCAGCC TACTTTTGCTCTATT TERM 1039 975972 - 975956 - g 73 -2.3 -5.27477 | AGTGGAATTAAAAAA TGAATTA GAG CAACTCA ATATTCCATTAATCG VFMJ11_A0876 975801 - 977195 + | deoxyribodipyrimidine photo-lyase TERM 1040 977206 - 977249 + F 77 -10 -2.98907 | gap 1, opp_overlap 977216, overlap 977205 GTTAACCACGCTTGA GTAT-GATTAATACATCTATT ACT AAGAGATGTATTAATCGATGC CTTTACCTTTTGTTC TERM 1041 978683 - 978667 - g 79 -8.7 -4.11692 | TATTGATGCTGAAAA CTGGATG GCA CACCCAG GCTCTGCAAATACCT VFMJ11_A0877 977246 - 979099 + | peptide methionine sulfoxide reductase VFMJ11_A0878 979262 - 979125 - | hypothetical protein VFMJ11_A0879 979455 - 980402 + | hypothetical protein TERM 1042 980471 - 980439 - T 100 -12.2 -4.43272 | gap 1, opp_overlap 980438 980437, overlap 980458 AGCTAAAATGCAAAA CCCAACGATGGA-AT AAAA ATGCCCATCGTTGGG AATTCCTCTAAACTG TERM 1043 980473 - 980458 - T 71 -3.2 -5.11063 | opp_overlap 980438 980437, overlap 980439 ACGATGGAATAAAAA TGCCCA TCGT TGGGAA TTCCTCTAAACTGCT VFMJ11_A0880 980818 - 980504 - | toxin of toxin-antitoxin stability system VFMJ11_A0881 981063 - 980809 - | antitoxin of toxin-antitoxin stability system TERM 1044 981275 - 981239 - R 91 -5.3 -5.7946 | gap 1, opp_overlap 981239 981234 CGCTCAATAAAAAAA CCACCTACC-TTTGAC GGGGGA GTAAAAAGGTAAGTGG TTTTGGTATTTTTTG VFMJ11_A0882 981815 - 981297 - | lipoprotein VFMJ11_A0883 982300 - 981815 - | hypothetical membrane protein VFMJ11_A0884 982835 - 982266 - | hypothetical membrane protein TERM 1045 982791 - 982750 - GR 89 -4.4 -5.59655 | overlap 982754 GAAAGTAATAAAAAA GGAATGGCTTGCTGCT TGTAAATGAT AGCAGCAAGCCAGGCA AGCTGAAACCACACG TERM 1046 982787 - 982754 - GR 100 -12.6 -4.04157 | overlap 982750 GTAATAAAAAAGGAA TGGCTTGCTGCT TGTAAATGAT AGCAGCAAGCCA GGCAAGCTGAAACCA VFMJ11_A0885 984177 - 982921 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1047 983689 - 983708 + g 73 -5.8 -4.51799 | GGCACTTGAATACAG CATTTCTT TATC AAGGAATG TTTTATACATTTCAT TERM 1048 983733 - 983749 + g 78 -3.7 -5.27335 | opp_overlap 983733 TTTCATTCCCTAAAT CATAATG AGC CAGTATG TTTTTCTTTGAGCCA VFMJ11_A0886 984938 - 984186 - | plasmid partition ParA protein TERM 1049 984894 - 984874 - G 91 -11.9 -4.08216 | TCACGTGTTTGAAAA CGGCGATGT CTA ACATCACCG TGATAAATACAGGAA VFMJ11_A0887 986194 - 984935 - | amine oxidase VFMJ11_A0888 986931 - 986191 - | short chain dehydrogenase VFMJ11_A0889 987368 - 986928 - | transcriptional regulator TERM 1050 987419 - 987449 + r 100 -15.8 -3.33483 | opp_overlap 987419 987426, overlap 987426 ATACGCTTAACGAAA TATAAAAGATCACA TCC TGTGATCTTTTATA TTCATAATTTAAGTA TERM 1051 987449 - 987419 - R 100 -15.8 -3.91352 | opp_overlap 987419 987426, overlap 987426 ATACGCTTAACGAAA TATAAAAGATCACA TCC TGTGATCTTTTATA TTCATAATTTAAGTA TERM 1052 987442 - 987426 - R 100 -9.5 -4.84539 | opp_overlap 987419 987426, overlap 987419 TAACGAAATATAAAA GATCACA TCC TGTGATC TTTTATATTCATAAT TERM 1053 987426 - 987442 + r 100 -9.5 -4.71186 | opp_overlap 987426 987419, overlap 987419 TAACGAAATATAAAA GATCACA TCC TGTGATC TTTTATATTCATAAT VFMJ11_A0890 988154 - 987471 - | transcriptional activator ChrR VFMJ11_A0891 988758 - 988147 - | RNA polymerase sigma-70 factor VFMJ11_A0893 988980 - 989306 + | cytochrome c-554 VFMJ11_A0892 990505 - 989273 - | cysteine desulfurase family protein TERM 1054 989985 - 990010 + g 79 -3.3 -5.51612 | ATTGATCCTGTGGTG TTAGACGCA TAAGTGGT TGCGACTAA TTTTGTTTTTTCTGT TERM 1055 990443 - 990433 - G 88 -4 -5.86061 | opp_overlap 990433 GCCCATCAAAAAAAA TAAC GGG GTTA TTGTCTACCTCTTGC VFMJ11_A0894 991145 - 990489 - | agglutination protein VFMJ11_A0895 992576 - 991374 - | bicyclomycin resistance protein TERM 1056 992341 - 992327 - G 76 -4.3 -5.10767 | GACCTAATATAAAAA TAGGA CGTCT TCCTA ACGCATCAGATAATG VFMJ11_A0896 992655 - 993527 + | transcriptional regulator, LysR family VFMJ11_A0897 993622 - 994242 + | homogentisate export protein VFMJ11_A0898 994455 - 994276 - | hypothetical protein VFMJ11_A0899 994599 - 995345 + | putative hydrolase TERM 1057 995387 - 995351 - T 100 -10.5 -4.42464 | gap 1, opp_overlap 995350 995349 995347 995358 995363, overlap 995355 AATGGTTTAAATAAA TTAA-TCAGGAAAGTG TATTAG CACTTTCCTGACTTAA ACTTAATTTAGCATA TERM 1058 995382 - 995355 - T 95 -12.9 -3.75884 | opp_overlap 995350 995349 995347 995358 995363, overlap 995351 GTTTAAATAAATTAA TCAGGAAAGTG TATTAG CACTTTCCTGA CTTAAACTTAATTTA TERM 1059 995358 - 995379 + T 72 -9.5 -2.55253 | opp_overlap 995355 995351, overlap 995350 995349 995347 995363 TAAATAAATTAATCA GGAAAGTGT ATTA GCACTTTCC TGACTTAAACTTAAT VFMJ11_A0900 996554 - 995403 - | short chain dehydrogenase VFMJ11_A0901 997177 - 996572 - | TonB protein VFMJ11_A0902 997596 - 997192 - | biopolymer transport protein exbD2 VFMJ11_A0903 998126 - 997593 - | TolQ protein TERM 1060 997827 - 997815 - G 70 -7.7 -3.61715 | TACTGTGCCTAATAA CCCAA GCA TTGGG CAAATTGACACTAAC TERM 1061 998006 - 997992 - G 100 -5 -5.72207 | TGGAAAGTAAAAAAA CAAGTA AAT TACTCG CTCAACGACAAACAA VFMJ11_A0904 999478 - 998126 - | TolQ protein TERM 1062 999108 - 999120 + g 77 -7.7 -4.24432 | TGCGTGCTATCAGCT CCAGT AAC ACTGG TTTGGTTTTCACTTT VFMJ11_A0905 1000241 - 999480 - | chromosome segregation ATPase VFMJ11_A0906 1002329 - 1000314 - | ferrichrome transport system permease protein FhuB TERM 1063 1000750 - 1000728 - G 74 -6.3 -4.41158 | overlap 1000725 GATACAAACAAACAA TATCAACGC TGATT GCGCCGATA CTCGATAAGTAGAAC VFMJ11_A0907 1003276 - 1002332 - | ferrichrome-binding protein VFMJ11_A0908 1004037 - 1003270 - | ferrichrome transport ATP-binding protein FhuC TERM 1064 1003794 - 1003809 + g 76 -4.6 -5.0133 | overlap 1003796 CTTCAGGTAACTTTT GAGGCA GAAA TGCCAC TTTTTTAGCAAACTC TERM 1065 1004126 - 1004102 - R 82 -7.9 -4.5538 | opp_overlap 1004100 1004102 ATAAAATGCAGAAAA GAAGTACGCAA GAT CCACGTACTTC TCTCTATTTTTAAAT VFMJ11_A0909 1006301 - 1004151 - | ferrichrome-iron receptor VFMJ11_A0910 1007345 - 1006446 - | transcriptional regulator, AraC family TERM 1066 1007435 - 1007460 + r 71 -7.5 -3.57792 | opp_overlap 1007436, overlap 1007436 ATCGTAAAATAAAAA ACGGAAGACCC TATT GGATCTTCCGC TTTAAAAGTGAATCA TERM 1067 1007436 - 1007459 + r 81 -11 -2.74461 | opp_overlap 1007436, overlap 1007435 TCGTAAAATAAAAAA CGGAAGACCC TATT GGATCTTCCG CTTTAAAAGTGAATC TERM 1068 1007459 - 1007436 - R 100 -13.2 -5.79595 | opp_overlap 1007436 1007435 TCGTAAAATAAAAAA CGGAAGACCC TATT GGATCTTCCG CTTTAAAAGTGAATC VFMJ11_A0911 1009096 - 1007486 - | pts system glucose-specific eiicba component TERM 1069 1008803 - 1008822 + g 70 -3.6 -4.96845 | gap 1, opp_overlap 1008805, overlap 1008805 TAATAGAAAACCAAT CA-CTGCAG AAA TTGCAGCTG TTTCTTTGTTTTTGT TERM 1070 1009360 - 1009339 - R 100 -13.1 -6.09196 | opp_overlap 1009339 TTTAAAACAAAAAAA TGGAAGCGA TGAG TCGCTTCCA TTTAATTTGATTAAA TERM 1071 1009339 - 1009360 + r 100 -13.1 -4.14598 | opp_overlap 1009339 TTTAAAACAAAAAAA TGGAAGCGA TGAG TCGCTTCCA TTTAATTTGATTAAA VFMJ11_A0912 1010984 - 1009389 - | ABC transporter ATP-binding protein TERM 1072 1011039 - 1011022 - R 83 -4.8 -5.43414 | opp_overlap 1011022 ATGAGACAGAAAAAA GCTGGC ACAAAA ACCAGC TTTTCAAATTTAGGG TERM 1073 1011072 - 1011085 + r 82 -5.3 -5.33331 | AGTATAGCAGCATTT GTGAT TTCC ATCAC TTTTTATTCTGTTTC VFMJ11_A0913 1011864 - 1011082 - | transcriptional regulator, AraC/XylS family TERM 1074 1011189 - 1011158 - G 74 -3.8 -5.03713 | gap 1 AAGAAGGAAATAAAA GCACTGTCAGATGAA AAA TCCAACTGA-AATGC AACATCACTTACTTG VFMJ11_A0914 1012005 - 1013081 + | multidrug resistance protein D TERM 1075 1013121 - 1013082 - T 71 -5.2 -4.61482 | gap 1, opp_overlap 1013087, overlap 1013085 1013087 GCTTTTAAAAAATAA TA-ACATGCTCGCTCTT ACATTAA ATGAGCGAGCATATCTA ATTTAGTGAATAGAT TERM 1076 1013117 - 1013085 - T 89 -8.5 -4.40692 | opp_overlap 1013087, overlap 1013082 1013087 TTTAAAAAATAATAA CATGCTCGCTCTT ACATTAA ATGAGCGAGCATA TCTAATTTAGTGAAT TERM 1077 1013115 - 1013087 - T 79 -8.9 -3.78069 | opp_overlap 1013087, overlap 1013085 1013082 TAAAAAATAATAACA TGCTCGCTCTT ACATTAA ATGAGCGAGCA TATCTAATTTAGTGA TERM 1078 1013087 - 1013115 + T 71 -8.9 -3.07227 | opp_overlap 1013087 1013085 1013082 TAAAAAATAATAACA TGCTCGCTCTT ACATTAA ATGAGCGAGCA TATCTAATTTAGTGA VFMJ11_A0915 1013552 - 1013148 - | hypothetical protein TERM 1079 1013766 - 1013745 - R 93 -7.3 -5.40625 | opp_overlap 1013745 ACAGTACATAAAAAA GGCCTAAAC CGAA GTCTAAGCC TTAATCATCTTAATT VFMJ11_A0916 1014267 - 1013782 - | lactoylglutathione lyase VFMJ11_A0917 1015090 - 1014434 - | chloramphenicol acetyltransferase TERM 1080 1015961 - 1015950 - g 70 -3 -5.06961 | ACCAACAAAAAGAAA TGAA ATCG TTCA ATTAATCCCAAGTTG TERM 1081 1016034 - 1016057 + G 76 -6.8 -4.43877 | AAGGAAACATTTACC TCAACGAACA AAGC TATTCGTTGA TTTCTTTCGGGATTA VFMJ11_A0918 1015180 - 1016088 + | transcriptional regulator, LysR family VFMJ11_A0919 1016221 - 1017036 + | acetyltransferase, gnat family TERM 1082 1017054 - 1017084 + F 93 -10.7 -3.94188 | opp_overlap 1017058, overlap 1017058 CAAACTCTTCTTTTA TAAAGCCTATATA ATGTC TATATGGGCTTTA TTATTTCGAGTACAT TERM 1083 1017058 - 1017080 + F 80 -7.1 -4.57581 | opp_overlap 1017058, overlap 1017054 CTCTTCTTTTATAAA GCCTATATA ATGTC TATATGGGC TTTATTATTTCGAGT VFMJ11_A0920 1017157 - 1017990 + | transcriptional regulator, AraC family TERM 1084 1018038 - 1018020 - T 100 -11 -6.07374 | opp_overlap 1018020 ACAAAAAACAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT TERM 1085 1018020 - 1018038 + T 89 -8.8 -4.31043 | opp_overlap 1018020 ACAAAAAACAAAAAA GCGAGCCA TCA TAGCTCGC TTTTCAATATTCTGT ackA_2 1019423 - 1018230 - | acetate kinase TERM 1086 1018402 - 1018385 - G 73 -7.1 -4.0219 | CAACAAAACCAAGAA TCTTAAG GTTG CTTAAGA TCTCACGACGGATTG VFMJ11_A0922 1019733 - 1020728 + | two component response regulator VFMJ11_A0923 1020728 - 1021690 + | sensor protein TERM 1087 1021745 - 1021726 - T 93 -7.9 -5.76633 | opp_overlap 1021726 CTAGACAGAAAAAAA CCGAAGT GATAAT ACTTCGG TTCTGATTACAACAA TERM 1088 1021726 - 1021745 + T 75 -8.6 -3.50853 | opp_overlap 1021726 CTAGACAGAAAAAAA CCGAAGTG ATAA TACTTCGG TTCTGATTACAACAA VFMJ11_A0924 1022795 - 1021905 - | maltose transport system permease protein MalG VFMJ11_A0925 1024408 - 1022864 - | maltose transport system permease protein MalF VFMJ11_A0926 1025737 - 1024553 - | periplasmic maltose-binding protein VFMJ11_A0927 1026146 - 1027255 + | lactose transport ATP-binding protein LacK TERM 1089 1027298 - 1027276 - f 100 -7 -6.07374 | opp_overlap 1027278, overlap 1027278 ACAAAAAATAAAAAA GAGCCCAACA ATG TATTGGGCTT TTGTTGTTTTATGCC TERM 1090 1027278 - 1027296 + F 88 -7.4 -5.12916 | opp_overlap 1027276 1027278 AAAAAATAAAAAAGA GCCCAACA ATG TATTGGGC TTTTGTTGTTTTATG TERM 1091 1027296 - 1027278 - f 100 -9.6 -4.6155 | opp_overlap 1027278, overlap 1027276 AAAAAATAAAAAAGA GCCCAACA ATG TATTGGGC TTTTGTTGTTTTATG glgX 1027368 - 1029323 + | glycogen debranching enzyme GlgX TERM 1092 1029383 - 1029365 - T 100 -13.2 -5.60689 | opp_overlap 1029365 GTATATAATAAAAAA GGAGGCTA AAA TAGCCTCC TTTTTGGTAACTAAG TERM 1093 1029365 - 1029383 + T 100 -13.2 -4.7497 | opp_overlap 1029365 GTATATAATAAAAAA GGAGGCTA AAA TAGCCTCC TTTTTGGTAACTAAG VFMJ11_A0929 1030623 - 1029682 - | chemotaxis protein CheV VFMJ11_A0930 1030816 - 1032057 + | serine/threonine transporter SstT (Na(+)/serine-threonine symporter) TERM 1094 1032114 - 1032078 - T 100 -16.2 -2.80077 | gap 1, opp_overlap 1032085, overlap 1032085 GGTTTATAAAACGCA TA-AAAAATGGCCGCTC GTTT GAGCGGCCATTTTTATA TTAAAATACCAACCT TERM 1095 1032106 - 1032085 - T 100 -15.9 -5.35222 | opp_overlap 1032085, overlap 1032078 AAAACGCATAAAAAA TGGCCGCTC GTTT GAGCGGCCA TTTTTATATTAAAAT TERM 1096 1032085 - 1032106 + T 100 -15.9 -5.09762 | opp_overlap 1032085 1032078 AAAACGCATAAAAAA TGGCCGCTC GTTT GAGCGGCCA TTTTTATATTAAAAT VFMJ11_A0931 1032790 - 1032128 - | permease TERM 1097 1032887 - 1032869 - R 93 -7.4 -5.46706 | opp_overlap 1032869 ACCGCAAAATAAAAA GGAAGACA TTA CGCCTTCC TTTAAAAGTTAACTC VFMJ11_A0932 1034381 - 1032918 - | glycogen synthase TERM 1098 1034288 - 1034320 + g 83 -6.2 -5.06816 | opp_overlap 1034283, overlap 1034290 CTTTTAATGACTTAG GCAGAGCCTTGGCA ACATC TGCCAAGCCTCCAC TTTTTATTAACCCGT glgC 1035588 - 1034371 - | glucose-1-phosphate adenylyltransferase VFMJ11_A0934 1035882 - 1036535 + | hypothetical protein TERM 1099 1036607 - 1036581 - T 100 -16 -5.06414 | opp_overlap 1036581 TTCTTTTAATAAAAA GCCCTAAATCAG AAA CTGACTTAGGGC TTTTTTCATTCATAC TERM 1100 1036581 - 1036607 + T 100 -13.8 -5.30155 | opp_overlap 1036581 TTCTTTTAATAAAAA GCCCTAAATCAG AAA CTGACTTAGGGC TTTTTTCATTCATAC glgB 1038780 - 1036633 - | 1,4-alpha-glucan branching enzyme TERM 1101 1037754 - 1037744 - G 73 -5.4 -4.51743 | GGATCATTAAACAAA GATG TTC CATC AAAATTCGCCAAACC TERM 1102 1038630 - 1038612 - G 86 -7.4 -5.10767 | overlap 1038614 CATTTAATACAAAAA CACCCGAA TGT TTCGGGTC TGAAAGCAATTGATA TERM 1103 1038628 - 1038614 - G 89 -10 -4.17211 | overlap 1038612 TTTAATACAAAAACA CCCGAA TGT TTCGGG TCTGAAAGCAATTGA TERM 1104 1038778 - 1038761 - G 90 -9.1 -4.92783 | AATGGATCAGAAAAA GCAGCCC TTTC GAGCTGC ATGTAGATGTCCTTT malQ 1041015 - 1038835 - | 4-alpha-glucanotransferase TERM 1105 1041029 - 1041047 + r 87 -13.2 -2.85004 | overlap 1041026 1041024 ATCGCTTTTCTCCAA GGGCAGTA CGA TACTGCCC TCATATTATAATTTT VFMJ11_A0937 1043521 - 1041068 - | maltodextrin phosphorylase TERM 1106 1041889 - 1041914 + g 71 -4.8 -4.63218 | GAACATCAAAGATGG CATCGGTATT TAATTC AATACCCATG TTTTCTTGAACCCAA TERM 1107 1041935 - 1041947 + g 87 -4.9 -5.42198 | TTGAACCCAATTAGC TAAAC GCT GTTTA TTTTGTTTTTTCACA TERM 1108 1043416 - 1043427 + g 73 -2.2 -5.21709 | CTAAATACCATACTT TAGC GCTC GCTG TTTTTTCATCTGCGG TERM 1109 1046355 - 1046340 - g 73 -7.6 -4.0031 | AGCGCTATCAAATAA TGAACG CTCT CGTTCA GCTCACTTCGATGAA VFMJ11_A0938 1043917 - 1046622 + | HTH-type transcriptional regulator MalT TERM 1110 1046651 - 1046690 + F 86 -5.3 -5.76237 | gap 1, overlap 1046676 ATTTTTTACACAGAA CTTATGTATAAT-CATGG CATCT TCATGCATTGTGCATAAG TTTTTTATTTGTATC VFMJ11_A0939 1046714 - 1047640 + | integral membrane protein TERM 1111 1047712 - 1047667 - T 80 -9.4 -3.5332 | gap 1, opp_overlap 1047671 1047680 1047707, overlap 1047669 1047680 AAACTGGTAAATCAA TAGATACAAAAAA-GGAGCAT TCAAT ATGCTCCTTTTTTTATATCTG TAATACTACTGATAT TERM 1112 1047710 - 1047669 - T 89 -12 -3.33419 | gap 1, opp_overlap 1047671 1047680 1047707, overlap 1047667 1047680 ACTGGTAAATCAATA GATACAAAAAA-GGAGCAT TCAAT ATGCTCCTTTTTTTATATC TGTAATACTACTGAT TERM 1113 1047671 - 1047706 + T 77 -10.1 -3.03443 | gap 1, opp_overlap 1047669 1047667 1047680, overlap 1047680 TGGTAAATCAATAGA TACAAAAAAGGAGCAT TCAAT ATGCTCCTTTTTT-TA TATCTGTAATACTAC TERM 1114 1047698 - 1047680 - T 95 -8.9 -5.46276 | opp_overlap 1047671 1047680, overlap 1047669 1047667 AATAGATACAAAAAA GGAGCAT TCAAT ATGCTCC TTTTTTTATATCTGT TERM 1115 1047680 - 1047698 + T 100 -8.9 -5.77988 | opp_overlap 1047680 1047669 1047667, overlap 1047671 AATAGATACAAAAAA GGAGCAT TCAAT ATGCTCC TTTTTTTATATCTGT VFMJ11_A0940 1048579 - 1047731 - | formate transporter TERM 1116 1048399 - 1048386 - G 72 -4.5 -4.6635 | AAACCGCCAACAAAA TGGGA CATA CCCCA TGGCATTGATTCAGC TERM 1117 1048606 - 1048629 + r 82 -7.5 -4.64676 | opp_overlap 1048606 TTTGATACAAGTGAA TAGGAGGGT CGGATA ATCCTCCTA TTTTGTTCGGAATAC TERM 1118 1048723 - 1048702 - R 82 -3.2 -5.75599 | TAAAGTATAAAAAAA TATTTATT GAAACT AATAAATA AGCATTGATTAAGTA VFMJ11_A0941 1048934 - 1048749 - | hypothetical protein VFMJ11_A0942 1049549 - 1048980 - | dna-3-methyladenine glycosylase 1 VFMJ11_A0943 1049666 - 1050106 + | hypothetical protein VFMJ11_A0944 1050103 - 1050663 + | SCO2 protein VFMJ11_A0945 1050689 - 1051135 + | periplasmiC protein conserved in bacteria with histidine TERM 1119 1051231 - 1051201 - f 80 -9.1 -3.55563 | opp_overlap 1051190 ATTGTACCTGTCAAA CTGCATCCCATTA TCCTC TGATGAGATGCAG TTCACATGTATTATC TERM 1120 1051775 - 1051757 - g 77 -8.2 -4.14013 | opp_overlap 1051756 TAAAACGCTGGAAAA TGCCAATT ACT AACTGGCA ACTTATTTACATGCA VFMJ11_A0946 1051237 - 1052133 + | transporter, drug/metabolite exporter family TERM 1121 1052190 - 1052155 - T 73 -9.1 -2.9348 | opp_overlap 1052164, overlap 1052164 TTTAAAGCTTACATA TACAAAGAAGCCGAC CATAAT GTCGGCTTTTTAGTA CAAAGAATAAGTCAG TERM 1122 1052164 - 1052181 + T 86 -8.4 -4.72272 | opp_overlap 1052164 1052155 TACATATACAAAGAA GCCGAC CATAAT GTCGGC TTTTTAGTACAAAGA TERM 1123 1052181 - 1052164 - T 81 -8.4 -4.2028 | opp_overlap 1052164, overlap 1052155 TACATATACAAAGAA GCCGAC CATAAT GTCGGC TTTTTAGTACAAAGA sigZ_2 1052751 - 1052206 - | RNA polymerase sigma factor, SigZ family TERM 1124 1052830 - 1052800 - R 81 -8.4 -4.15029 | opp_overlap 1052805, overlap 1052805 AGGCGATACAAACAA CTTAAGGTAACCAA TAA TTGGTTACCTTGAT TAAAGTCTACTATTT TERM 1125 1052805 - 1052825 + r 93 -12.7 -3.36785 | opp_overlap 1052805 1052800 ATACAAACAACTTAA GGTAACCAA TAA TTGGTTACC TTGATTAAAGTCTAC TERM 1126 1052825 - 1052805 - R 93 -12.7 -3.36299 | opp_overlap 1052805, overlap 1052800 ATACAAACAACTTAA GGTAACCAA TAA TTGGTTACC TTGATTAAAGTCTAC VFMJ11_A0948 1053572 - 1052862 - | glutathione S-transferase TERM 1127 1053680 - 1053659 - R 100 -9.5 -6.09888 | opp_overlap 1053659 TTTTAATAAAAAAAA TCCCCATCA AAGA TGATGAGGA TTAGATATGGTTAAA VFMJ11_A0949 1053966 - 1053709 - | hypothetical protein VFMJ11_A0950 1054864 - 1054070 - | vulnibactin utilization protein ViuB VFMJ11_A0951 1055637 - 1054876 - | ferrichrome transport ATP-binding protein FhuC VFMJ11_A0952 1056596 - 1055646 - | ferric anguibactin transport system permease protein FatC VFMJ11_A0953 1057524 - 1056589 - | hypothetical protein TERM 1128 1057136 - 1057122 - G 73 -5.7 -4.49314 | CATTACCAAAAATAA TACCG ATGAG CGGTA CATAAATGGCATTTT TERM 1129 1057573 - 1057547 - R 95 -12.4 -3.86897 | opp_overlap 1057540 1057547 CTCAGCCTGCACAAA GCGTGCTATCTC AAT GAAATAACACGC TTTACAGTGGAATTA TERM 1130 1057547 - 1057573 + r 73 -8 -3.61103 | opp_overlap 1057547, overlap 1057540 CTCAGCCTGCACAAA GCGTGCTATCTC AAT GAAATAACACGC TTTACAGTGGAATTA VFMJ11_A0954 1058482 - 1057598 - | ferric anguibactin-binding protein TERM 1131 1058572 - 1058557 - R 74 -6.2 -4.51174 | TCACTATAATGAAAA TGGTTA TTAT TAACCA GAATAAAAAAGTAAA TERM 1132 1058690 - 1058663 - R 84 -5.7 -5.49234 | ATAGGCAATAAAAAA GGCCATTAT AGGGGGAATG ATAATGGCC TTAAAAATACATAGC TERM 1133 1058935 - 1058947 + r 84 -6.3 -5.1101 | overlap 1058933 TTAATTGACCATTTA TGAGT CAT ACTCA TTTTTTCCATAATAA TERM 1134 1059175 - 1059153 - R 76 -2.7 -5.47431 | gap 1 TTAACACATAAAAAA GGCG-CTGCA TTAA TACAAACGCC TTCGAGATACCACTT VFMJ11_A0955 1059578 - 1059216 - | glutaredoxin 2 TERM 1135 1059732 - 1059706 - R 100 -9.5 -6.02914 | opp_overlap 1059706 TTTATATAAAAAAAA GCCTCAAAAGA AATCA TCTTATGAGGC TTTAAATTTATCGTT TERM 1136 1059706 - 1059732 + r 85 -9.5 -3.90889 | opp_overlap 1059706 TTTATATAAAAAAAA GCCTCAAAAGA AATCA TCTTATGAGGC TTTAAATTTATCGTT putP 1061260 - 1059764 - | sodium/proline symporter TERM 1137 1060699 - 1060684 - G 78 -7.6 -4.40237 | CAGCAGACATTAAAA GACCTT GAAC AAGGTC GGTCCATGCAACGGC VFMJ11_A0957 1062077 - 1061370 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 1138 1061782 - 1061795 + g 73 -2.3 -5.26918 | opp_overlap 1061782 ATTTGACCAATTAAT GCAAC AACC GATGC TTTTTTATCCGATGT VFMJ11_A0958 1065241 - 1062092 - | bifunctional protein PutA TERM 1139 1063800 - 1063788 - G 84 -7.7 -4.76123 | opp_overlap 1063787 AAACGATGAACAAAA GAGCT ATT AGCTC CATTCTCTAATAAAC TERM 1140 1064176 - 1064194 + g 71 -6 -4.25283 | TTACTAACCTAAGTG GAATGAGG TCT CCTTGTTC TTTTGATAACGCCGT VFMJ11_A0959 1066207 - 1065428 - | transcriptional regulator, AraC family TERM 1141 1066040 - 1066022 - G 77 -5.3 -4.84529 | gap 1 GTACAAACTCAAAAA GGCATGCT CTTG AGC-TGCC GGAATTATGGCGACT TERM 1142 1066065 - 1066077 + g 72 -3.5 -5.10765 | GCGACTTTCCCTGTA TAAAT AAC ATTTA TTTTATTATTTATTT TERM 1143 1066886 - 1066862 - g 70 -5.8 -4.40993 | overlap 1066864 GAGAAATGACCAAAA TCGACTACGT GATTT ACGTAATCAA AGTGATTCTTTAGAC VFMJ11_A0960 1066671 - 1068518 + | NirV TERM 1144 1068569 - 1068544 - T 100 -11.9 -4.36596 | opp_overlap 1068544 TCCATAAGCAACAAA GCCGCTGAATA GTCA TGTTCAGCGGC TTTTTTATTAACAGA TERM 1145 1068544 - 1068569 + T 100 -14.1 -5.4505 | opp_overlap 1068544 TCCATAAGCAACAAA GCCGCTGAATA GTCA TGTTCAGCGGC TTTTTTATTAACAGA VFMJ11_A0961 1069550 - 1068648 - | hypothetical protein VFMJ11_A0962 1071957 - 1069540 - | P pilus assembly protein, porin PapC VFMJ11_A0963 1072648 - 1071992 - | P pilus assembly protein, chaperone PapD VFMJ11_A0964 1073206 - 1072700 - | hypothetical protein VFMJ11_A0965 1074015 - 1073350 - | response regulator VFMJ11_A0966 1074417 - 1075205 + | YbbM family integral membrane protei TERM 1146 1076012 - 1076001 - g 75 -5.8 -4.71061 | ATTTAGATGGAAAAA TGCC AGAA GGCA GCAGATGGACCTTCT TERM 1147 1076225 - 1076211 - g 72 -4.3 -4.74676 | AATTAAAAAAAAATA TTGAG GCGTT CTCAA AACCATTAAGTGACG VFMJ11_A0967 1075241 - 1076293 + | protein tas TERM 1148 1076328 - 1076362 + T 100 -11.6 -4.30909 | opp_overlap 1076333, overlap 1076333 ATGCTCACTACATAG AAAAATGGCGCATC TTATCTT GATGCGCCATTTTA TTCTTTTAATCTCTG TERM 1149 1076333 - 1076357 + T 100 -11.5 -5.10656 | opp_overlap 1076333, overlap 1076328 CACTACATAGAAAAA TGGCGCATC TTATCTT GATGCGCCA TTTTATTCTTTTAAT TERM 1150 1076357 - 1076333 - T 100 -11.5 -5.05601 | opp_overlap 1076328 1076333 CACTACATAGAAAAA TGGCGCATC TTATCTT GATGCGCCA TTTTATTCTTTTAAT VFMJ11_A0968 1079440 - 1076387 - | putative ATPase involved in pili biogenesis TERM 1151 1078159 - 1078171 + g 79 -4.8 -5.14563 | overlap 1078156 TAATAGGAGAAATCT GCCA CAGGT TGGC TTTTTTAGTAACAAC TERM 1152 1078407 - 1078424 + g 73 -5.5 -4.48823 | opp_overlap 1078407 TGTGAAGTAACAGAT GCAATCG TAAC CGTTTGC TTTTCTACATTCGTT VFMJ11_A0969 1079763 - 1080668 + | hypothetical protein TERM 1153 1080690 - 1080721 + T 100 -14.7 -4.74801 | opp_overlap 1080690 1080694, overlap 1080694 TGAACCTGAAAAGCA TAAACCCGTTGAA CTCTCA TTCAACGGGTTTA TTTTTACTCAGCTTA TERM 1154 1080721 - 1080690 - T 100 -15.4 -3.11289 | opp_overlap 1080690 1080694, overlap 1080694 TGAACCTGAAAAGCA TAAACCCGTTGAAC TCTC ATTCAACGGGTTTA TTTTTACTCAGCTTA TERM 1155 1080694 - 1080717 + T 100 -11.1 -4.91852 | opp_overlap 1080690 1080694, overlap 1080690 CCTGAAAAGCATAAA CCCGTTGAA CTCTCA TTCAACGGG TTTATTTTTACTCAG TERM 1156 1080717 - 1080694 - T 100 -11.8 -4.208 | opp_overlap 1080694 1080690, overlap 1080690 CCTGAAAAGCATAAA CCCGTTGAAC TCTC ATTCAACGGG TTTATTTTTACTCAG speB 1081669 - 1080743 - | agmatinase speA 1083579 - 1081669 - | arginine decarboxylase VFMJ11_A0972 1083862 - 1085121 + | hydroxymethylglutaryl-coenzyme A reductase TERM 1157 1085149 - 1085177 + T 100 -11.9 -5.16038 | opp_overlap 1085153, overlap 1085153 CAGGTTTCCATATAA AAAATGGCACTTA ATA TAAGTGCCATTTC TTTTATTTGTTATAT TERM 1158 1085173 - 1085153 - T 100 -12.7 -5.36441 | opp_overlap 1085149 1085153 TTTCCATATAAAAAA TGGCACTTA ATA TAAGTGCCA TTTCTTTTATTTGTT TERM 1159 1085153 - 1085173 + T 100 -12.7 -5.02645 | opp_overlap 1085153, overlap 1085149 TTTCCATATAAAAAA TGGCACTTA ATA TAAGTGCCA TTTCTTTTATTTGTT VFMJ11_A0973 1085732 - 1085202 - | outer membrane lipoprotein blc TERM 1160 1085246 - 1085279 + g 79 -9 -3.84278 | opp_overlap 1085246 TTGTTTTAAAACCAA GTGATTGAGCGGTT GATACA AAACGTTCAATCAC TTCTTGGTTCACTTT VFMJ11_A0974 1085936 - 1085817 - | hypothetical protein TERM 1161 1085850 - 1085862 + g 79 -3.5 -5.40464 | AATATTCATTATTCC TAAAT GGT ATTTA TTTTTATTTATCATA TERM 1162 1085894 - 1085907 + g 76 -3.1 -5.18726 | AACCAAAAATAAATT TGTGA CTAA TCGCA TTTTTATTATACGCA VFMJ11_A0975 1085968 - 1087119 + | outer membrane protein P1 TERM 1163 1087133 - 1087155 + F 84 -5.6 -5.45802 | opp_overlap 1087133 AAATAATTAATTCAA GCAGTATG TTCCATT CATGCTGC TTTTTGTTTTAACCA VFMJ11_A0976 1087249 - 1088178 + | putative transcriptional regulator, LysR family TERM 1164 1088187 - 1088212 + T 72 -4.8 -4.68593 | opp_overlap 1088182 1088187 TAAATAAATATAAAA TCCAATAAAC CATTCA GTATATTGGA TTTTTAAATAATGAA TERM 1165 1088212 - 1088187 - T 77 -5.5 -4.93454 | opp_overlap 1088187, overlap 1088182 TAAATAAATATAAAA TCCAATAAACC ATTC AGTATATTGGA TTTTTAAATAATGAA VFMJ11_A0977 1089042 - 1088236 - | hypothetical protein VFMJ11_A0978 1089263 - 1090453 + | serine/threonine protein kinase TERM 1166 1090479 - 1090467 - T 72 -4.9 -4.68919 | overlap 1090462 AAACAGAAACTAAAA TTTAC AAT GTAAA CTTCAAAAATTAAAA TERM 1167 1090496 - 1090521 + T 100 -10.6 -5.39681 | opp_overlap 1090496 TTCAAAAATTAAAAA GCCTTAAATG ATCCTA CATTTAAGGC TTTTTGTTTAATTAT TERM 1168 1090521 - 1090496 - T 100 -10.6 -5.18355 | opp_overlap 1090496 TTCAAAAATTAAAAA GCCTTAAATG ATCCTA CATTTAAGGC TTTTTGTTTAATTAT astB 1091910 - 1090576 - | succinylarginine dihydrolase TERM 1169 1093357 - 1093341 - g 73 -7.3 -4.12188 | opp_overlap 1093341 GCACTAGCTCCAAAA GCTGCAA TGG TTGCAAC CTTCTACTCAGCAGT VFMJ11_A0980 1092234 - 1093421 + | hypothetical protein TERM 1170 1093477 - 1093499 + T 100 -14.2 -4.66537 | opp_overlap 1093477 AGATGAAACAACAAA GGCGACAGTA TTA TGCTGTCGCC TTTTGTATTAAAACG TERM 1171 1093499 - 1093477 - T 100 -12 -4.61162 | opp_overlap 1093477 AGATGAAACAACAAA GGCGACAGTA TTA TGCTGTCGCC TTTTGTATTAAAACG VFMJ11_A0981 1094390 - 1093530 - | glutathione S-transferase rarD_1 1094545 - 1095396 + | RarD protein VFMJ11_A0982 1096252 - 1095383 - | transcriptional regulatory protein TERM 1172 1095432 - 1095446 + g 70 -3.6 -4.91109 | overlap 1095433 TCAAACTCTTCGTTT TCATTT AAA AAATGG TTTTTGTGATAACGA VFMJ11_A0984 1096365 - 1097519 + | transcriptional regulatory protein VFMJ11_A0985 1097556 - 1098680 + | zinc-carboxypeptidase TERM 1173 1098688 - 1098722 + T 100 -17.5 -3.65084 | opp_overlap 1098688 1098691 1098696, overlap 1098691 1098696 AACTGTAATTCACAA TAATAAAAGCCGATC TAAAT GATCGGCTTTTATTA TTTAACAATTTGCTT TERM 1174 1098722 - 1098688 - T 100 -17.5 -3.42621 | opp_overlap 1098688 1098691 1098696, overlap 1098691 1098696 AACTGTAATTCACAA TAATAAAAGCCGATC TAAAT GATCGGCTTTTATTA TTTAACAATTTGCTT TERM 1175 1098691 - 1098719 + T 100 -14.8 -3.95071 | opp_overlap 1098688 1098691 1098696, overlap 1098688 1098696 TGTAATTCACAATAA TAAAAGCCGATC TAAAT GATCGGCTTTTA TTATTTAACAATTTG TERM 1176 1098719 - 1098691 - T 100 -14.8 -3.84808 | opp_overlap 1098691 1098688 1098696, overlap 1098688 1098696 TGTAATTCACAATAA TAAAAGCCGATC TAAAT GATCGGCTTTTA TTATTTAACAATTTG TERM 1177 1098696 - 1098714 + T 100 -10.3 -5.00196 | opp_overlap 1098691 1098688 1098696, overlap 1098691 1098688 TTCACAATAATAAAA GCCGATC TAAAT GATCGGC TTTTATTATTTAACA TERM 1178 1098714 - 1098696 - T 100 -10.3 -4.95547 | opp_overlap 1098696 1098691 1098688, overlap 1098691 1098688 TTCACAATAATAAAA GCCGATC TAAAT GATCGGC TTTTATTATTTAACA VFMJ11_A0986 1099363 - 1098737 - | lipoprotein, putative VFMJ11_A0987 1100376 - 1099375 - | acid phosphatase TERM 1179 1100518 - 1100537 + r 100 -12.2 -4.74801 | opp_overlap 1100518 TATAGAAATAAAAAA GCCGATCT TAGT AGATCGGC TTTTTGGTAAAGTTC TERM 1180 1100537 - 1100518 - R 100 -12.2 -5.76237 | opp_overlap 1100518 TATAGAAATAAAAAA GCCGATCT TAGT AGATCGGC TTTTTGGTAAAGTTC VFMJ11_A0988 1101588 - 1100929 - | hypothetical protein VFMJ11_A0989 1102019 - 1101660 - | hypothetical protein TERM 1181 1102282 - 1102256 - g 74 -3.8 -5.01553 | AAGCGACAAATAAAA GTTCTTTTTC AACATCA GAACAAGAAC TACAGTTAGAAACAC VFMJ11_A0990 1102225 - 1102566 + | transcriptional repressor SmtB TERM 1182 1102574 - 1102596 + F 79 -4.1 -5.34055 | opp_overlap 1102576, overlap 1102576 TGATGTAATACGAAT AACGCCGTT TAGAT AATGGCGTA TTTTTTGATATTTAT TERM 1183 1102576 - 1102594 + F 74 -6.7 -4.27753 | opp_overlap 1102576, overlap 1102574 ATGTAATACGAATAA CGCCGTT TAGAT AATGGCG TATTTTTTGATATTT arsB 1102657 - 1103697 + | arsenical-resistance protein TERM 1184 1103746 - 1103721 - T 100 -11.3 -4.8622 | opp_overlap 1103721 TTCTTTAATCAAAAA TAGCCTTTAGC TTCC ACTAAAGGCTA TTTTTTATCGCGTCA TERM 1185 1103721 - 1103746 + T 100 -10.6 -5.26316 | opp_overlap 1103721 TTCTTTAATCAAAAA TAGCCTTTAG CTTCCA CTAAAGGCTA TTTTTTATCGCGTCA VFMJ11_A0992 1105645 - 1103771 - | toxin corregulated pilus biosynthesis protein I VFMJ11_A0993 1105888 - 1105727 - | hypothetical protein TERM 1186 1106233 - 1106221 - g 79 -4.9 -5.05116 | TCATAAATAATAAAA GTTAT GTG ATAAC CATTCCCGAAAGTAA VFMJ11_A0994 1106151 - 1106633 + | transcriptional regulatory protein, C TERM 1187 1106652 - 1106666 + F 76 -4.4 -5.07486 | opp_overlap 1106650, overlap 1106651 TGAACAAACTAAGCT TATTTA AAA TAAATA TTTTTATTACCAGTA VFMJ11_A0995 1106826 - 1106945 + | hypothetical protein VFMJ11_A0996 1106915 - 1107094 + | hypothetical protein VFMJ11_A0997 1107180 - 1108715 + | anaerobic nitric oxide reductase transcription regulator NorR TERM 1188 1108838 - 1108822 - f 72 -5.1 -4.8143 | overlap 1108824 TCAATAACTTAAAAA TGGCACA GAC TGTGCAA TAGATGGTTTATCAA TERM 1189 1109838 - 1109820 - g 85 -3.8 -5.63103 | CCTGAACTAAAAAAA TACCCTCA TCT TGTAGGTA ACTACGGCAGCGCAT TERM 1190 1110109 - 1110123 + G 80 -10 -3.62046 | opp_overlap 1110107 GTAACGCACTAATGG CTGCAG CTC CTGCAG TTGTTGAGCAAGTAA hcp 1108956 - 1110617 + | hydroxylamine reductase TERM 1191 1110644 - 1110663 + F 100 -10 -4.66609 | opp_overlap 1110644 AAATCCATCAAGTTA TGCCTCAG TTAT CTGGGGCA TTTTTCGCTAGCGTG VFMJ11_A0999 1110712 - 1111743 + | iron-sulfur cluster-binding protein TERM 1192 1111730 - 1111748 + T 70 -4.6 -4.78572 | overlap 1111725 AAAGTGATGTTGAAG TGAGTTTA GTT TAATCTCA TTTTATTCATTCCAA TERM 1193 1111814 - 1111769 - T 83 -5 -5.44119 | opp_overlap 1111769 1111806 TTCATTCCAAAAAAA CCGATGA-CTCTTTTTATACTA ATCA TAGTA-AATAAGTGATCATCGG TCTTTTTATATCGTA VFMJ11_A1000 1115594 - 1111851 - | cellulose synthase operon C protein TERM 1194 1115338 - 1115326 - G 75 -7.7 -4.07885 | opp_overlap 1115325 TATTGTGCCTGAAAA CTGAG TCC CTCAG CGTTTTCAGGATCAA VFMJ11_A1001 1116763 - 1115585 - | endoglucanase VFMJ11_A1002 1119009 - 1116763 - | cellulose synthase regulatory subunit TERM 1195 1117255 - 1117268 + g 71 -3.9 -4.89838 | opp_overlap 1117255, overlap 1117257 ATTTGATGCAACCAA TTGAA TATT TTCAA TTTTCTCTTTATTAA TERM 1196 1117575 - 1117565 - G 75 -5.4 -4.72486 | GAGAAACCTGAAAAA TCGA TGG TCGA ATCAGAGTTGATTAC TERM 1197 1118058 - 1118083 + g 73 -7.7 -3.80855 | gap 1, opp_overlap 1118057 GCGCATCATAAGGAG TTC-GCGGAACA AGT TGTTCTGCAGAA TTAATTTTTGCCGAC celA 1121674 - 1119047 - | cellulose synthase catalytic subunit (UDP-forming) TERM 1198 1119099 - 1119114 + g 71 -7.6 -3.92963 | opp_overlap 1119099 1119098 TTTTTTGGTTTAAAT GTGAGT AAAA ACTCAC TTGTTATAGTTATTA TERM 1199 1119539 - 1119556 + g 75 -5.5 -4.81082 | overlap 1119542 AGACATTGGAATATT GACCACC ACGC GGTGATC TTTTCTTACTTGCTT TERM 1200 1120480 - 1120502 + g 70 -2.6 -5.04325 | GAGAAAAGAAATGGT GCGGAGTTTG AAT TAAACCCAGC TTTTTATCCTTTAAA yhjQ 1122448 - 1121678 - | cellulose synthase operon protein YhjQ TERM 1201 1122877 - 1122853 - H 72 -5.9 -4.32482 | opp_overlap 1122848 1122853, overlap 1122859 ATCTAGAATCTAAAA TAAAAACAATA TCA CATTGTTCTTA TTTTGTTATTAAAAT TERM 1202 1122871 - 1122859 - H 76 -2.7 -5.49568 | opp_overlap 1122853 1122848, overlap 1122853 AATCTAAAATAAAAA CAATA TCA CATTG TTCTTATTTTGTTAT TERM 1203 1123131 - 1123159 + G 70 -8.5 -3.30007 | opp_overlap 1123133, overlap 1123121 GAAGATGAGTTCATA TATTTATTTAAAT CTA ATTTAAGTAAATA TTGTGAAAACATATT TERM 1204 1124424 - 1124412 - g 87 -3.4 -5.83211 | TATGAAAACAAAAAA GTAG AAACA CTAC CAACAATTCCGCAAT VFMJ11_A1005 1122939 - 1124477 + | zinc metalloprotease VFMJ11_A1006 1124482 - 1124688 + | hypothetical protein TERM 1205 1125998 - 1125988 - g 73 -5.4 -4.52589 | TGCGTGGAGATAAAA TGCA AAT TGCA GGTATGCGTGAAATT yhjU 1124688 - 1126316 + | cellulose synthase operon protein YhjU TERM 1206 1126329 - 1126356 + T 93 -9.3 -4.36127 | gap 1, opp_overlap 1126329 TAAACTAACAAAAAA GCCCAAAGTAGT TATTC AC-ACTTTGGGC TTTTACATTCTTACC TERM 1207 1126356 - 1126329 - T 100 -9.3 -5.59655 | gap 1, opp_overlap 1126329 TAAACTAACAAAAAA GCCCAAAGTAGT TATTC AC-ACTTTGGGC TTTTACATTCTTACC VFMJ11_A1008 1126853 - 1126386 - | hypothetical protein VFMJ11_A1009 1126967 - 1127977 + | transcriptional regulator, AraC family VFMJ11_A1010 1128104 - 1128466 + | hypothetical protein VFMJ11_A1011 1128459 - 1129682 + | multidrug resistance protein A TERM 1208 1129696 - 1129728 + T 100 -15.6 -5.24129 | AAATACTTTCGTTTT GCCCTTCCGCTCAA CTCTC TCGAGCGGAGGGGC TTTTTTATAACCCCA VFMJ11_A1012 1130596 - 1129733 - | transcriptional regulator, LysR family VFMJ11_A1013 1130857 - 1130690 - | hypothetical protein VFMJ11_A1014 1130856 - 1131542 + | hypothetical protein VFMJ11_A1015 1131593 - 1133113 + | arylsulfatase TERM 1209 1133135 - 1133158 + F 100 -11.1 -4.11692 | opp_overlap 1133131 CTAATTAACGATTTA TAGTGGCTC CGAATA GAGCCACTA TTTTAAAGATAAGTG TERM 1210 1133260 - 1133248 - g 73 -5.5 -4.57057 | opp_overlap 1133248 ACAGCAGAAAAACAA GTCGG TTC CCAAC GTCGTTTTCATGTTA TERM 1211 1133427 - 1133405 - g 86 -7.8 -4.84017 | overlap 1133392 1133426 AAGCCTTCATAAAAA GCTATATTGA GAG TCAAGATAGC CATGAAATTGTCTTT VFMJ11_A1016 1133179 - 1134474 + | chondroitin sulfate/heparin utilization regulation protein moxR 1134503 - 1135486 + | ATPase, MoxR family TERM 1212 1135601 - 1135576 - g 73 -5.5 -4.56597 | opp_overlap 1135576 CTCGTCTTGTAAAAA TGAAAACCAAT ATCA ATGGGTTCTCA CTTTCCCCATACTTA TERM 1213 1136017 - 1136004 - g 79 -3.1 -5.49729 | AAGTATCTAAAAAAA TTGGC TGCG ACCAA TCAATCACTACAAGT TERM 1214 1136070 - 1136049 - g 80 -2.3 -5.60556 | AATACAAAAGAAAAA CATTCGA TTTCATTT TCGAACG CACTTCATTCTCTTA VFMJ11_A1018 1135494 - 1136456 + | MoxR protein VFMJ11_A1019 1136459 - 1136989 + | hypothetical protein VFMJ11_A1020 1136982 - 1138034 + | von Willebrand factor, type A TERM 1215 1139374 - 1139392 + G 72 -3.2 -5.02606 | overlap 1139369 CCAAATGAATTAGAG CATCAA ACAAATA TTGATG TTTTATTATTTAATA VFMJ11_A1021 1138027 - 1139802 + | transporter VFMJ11_A1022 1139802 - 1141043 + | hypothetical protein TERM 1216 1142388 - 1142378 - g 89 -6.8 -5.25803 | AAGGCTTACAAAAAA TCCG TCC CGGA ATACAAGTTGAAGAA VFMJ11_A1023 1141267 - 1142421 + | acriflavin resistance periplasmic protein TERM 1217 1142959 - 1142947 - g 70 -5.5 -4.3534 | overlap 1142948 GTCGAACGATTAAAA CGCCT CGA AGGCA TGAGTGACATCACCT TERM 1218 1144865 - 1144855 - g 75 -5.4 -4.82128 | TTAGTAAAGATAAAA CCAA TAT TTGG TCCTGATTCACTCAT TERM 1219 1145129 - 1145114 - g 71 -7.6 -3.92324 | TTGCTCAATATGAAA GTTGGA GTAT TCCAAC AGCAGTTATGATGGC VFMJ11_A1024 1142443 - 1145556 + | OqxB VFMJ11_A1025 1145655 - 1146410 + | hypothetical protein VFMJ11_A1026 1147264 - 1146467 - | regulatory protein RecX VFMJ11_A1027 1147971 - 1147414 - | hypothetical protein TERM 1220 1148020 - 1148010 - H 70 -4 -4.84914 | opp_overlap 1148010, overlap 1148005 ATGCACAGAATAAAA TGAA TAT TTCA TTTTGATAATATGGT TERM 1221 1148971 - 1148953 - g 77 -8.1 -4.1421 | opp_overlap 1148953 TACATTAAAGAACAA CGCTCCC ATATA GAGAGCG TCATTAATCCGATTA VFMJ11_A1028 1148083 - 1148991 + | transcriptional