"; $justify = "style=\"text-align:right; padding:0px; padding-right:7px;vertical-align:bottom; padding-bottom:2px; margin:0px\""; $width = 240; ?>
Overview
Download Predictions
Search Terminators
Find terminators that:
Are in organism
"; print"
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"; } if ($toggle == 'f'){ print "
Current Organism:
"; ?>
Change Organism
$spacer
"; } print ""; print "
Have confidence ≥
"; if ($conf){ print "
"; } else{ print "
"; } print " (between 0 and 100, inclusive)
$spacer
Are in
Tail-to-tail or Head-to-tail
Intergenic
Tail-to-tail
Head-to-tail
Forward head-to-tail
Reverse head-to-tail
Gene
Head-to-head
Show All
regions
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require terminator to be directed with region
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Have stem length ≥
"; if ($rangeStart){ print "
"; }else{ print "
"; } print "
but ≤
"; if ($rangeStop){ print "
"; } else{ print "
"; } print "
$spacer
Have hairpin score ≤
"; if ($hairpin){ print "
"; } else{ print "
"; } print "
and tail score ≤
"; if ($tail){ print "
(should be non-positive)"; } else{ print "
(should be non-positive)"; } print "
$spacer
Contain the DNA sequence
"; if ($subseq){ print "
"; }else{ print "
"; } print "
$spacer
"; if ($greyout == 'off'){ print "
Show all
Are 1kb downstream of genes
"; }else{ print "
Show all
Are 1kb downstream of genes "; } print "
$spacer
Genes named
"; if ($genes){ if ($greyout == 'off'){ print "
e.g. pheT (use ',' for multiple genes)"; }else{ print "
e.g. pheT (use ',' for multiple genes)"; } }else{ if ($greyout == 'off'){ print "
e.g. pheT (use ',' for multiple genes)"; }else{ print "
e.g. pheT (use ',' for multiple genes)"; } } print ""; print "
$spacer
Genes with description containing
"; if ($geneDes){ if ($greyout == 'off'){ print "
e.g. hypothetical protein."; } else { print "
e.g. hypothetical protein."; } }else{ if ($greyout == 'off'){ print "
e.g. hypothetical protein."; } else { print "
e.g. hypothetical protein."; } } print ""; print "
$spacer
$spacer
"; ?>
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